Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 193 of 438
Found at i:59953332 original size:124 final size:124
Alignment explanation
Indices: 59953154--59953456 Score: 340
Period size: 124 Copynumber: 2.5 Consensus size: 124
59953144 TGTTTGCAAG
** * * * * *
59953154 AAAACACCACTAAAAACTGAGCAATAGCGGCGTTTCTGGTTCAAAGGCCGCTAAAAACTGAGCAA
1 AAAACACCACTAAAAACTGAGCAATAGCAACGTTTCTAGTCCAAACGCCACTAAAAACTGAACAA
* ** * *
59953219 TAGCGGCATTTTTGGTCCAAATGCCATTAAAAACTGAGCAAATAGTGG-TGTTTTTGATC
66 TAACGGCATTTTTGGTCCAAACACCACTAAAAACTAAGC-AATAGTGGCTGTTTTTGATC
* * * * *
59953278 CAAACGCCACTAAAAACTGAGCAATAGCAATGTTTCTAGTCCAAACGCTACTAAAAATTGAACAA
1 AAAACACCACTAAAAACTGAGCAATAGCAACGTTTCTAGTCCAAACGCCACTAAAAACTGAACAA
* * *
59953343 TAACGGCGTTTTTGGTCCAAACACCACTAAAAACTAAGCAATAGTGGCTTTTTTTGGTC
66 TAACGGCATTTTTGGTCCAAACACCACTAAAAACTAAGCAATAGTGGCTGTTTTTGATC
* * * ** * *
59953402 AAAACTCCGCTAAAAACTGAGCAATAACGGCGTTTTTGGTCCAAACGCCAC-AAAA
1 AAAACACCACTAAAAACTGAGCAATAGCAACGTTTCTAGTCCAAACGCCACTAAAA
59953457 CGTTGAGCAG
Statistics
Matches: 148, Mismatches: 30, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
123 12 0.08
124 136 0.92
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (124 bp):
AAAACACCACTAAAAACTGAGCAATAGCAACGTTTCTAGTCCAAACGCCACTAAAAACTGAACAA
TAACGGCATTTTTGGTCCAAACACCACTAAAAACTAAGCAATAGTGGCTGTTTTTGATC
Found at i:59953758 original size:14 final size:14
Alignment explanation
Indices: 59953731--59953828 Score: 52
Period size: 14 Copynumber: 6.8 Consensus size: 14
59953721 TGACTTTCTC
*
59953731 TAAACCCCTAAACCC
1 TAAA-CCCTAAACCT
*
59953746 TAAACCTTAAACCT
1 TAAACCCTAAACCT
* **
59953760 TAAATCCTAAATTT
1 TAAACCCTAAACCT
* * *
59953774 TAAAAACATAAACCA
1 T-AAACCCTAAACCT
** * *
59953789 TAAACATTAATCCA
1 TAAACCCTAAACCT
*
59953803 TAAACCCTAAAACT
1 TAAACCCTAAACCT
59953817 CTAAACCCTAAA
1 -TAAACCCTAAA
59953829 AATATTTAAT
Statistics
Matches: 61, Mismatches: 20, Indels: 4
0.72 0.24 0.05
Matches are distributed among these distances:
14 37 0.61
15 24 0.39
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:59953992 original size:15 final size:15
Alignment explanation
Indices: 59953936--59954005 Score: 56
Period size: 14 Copynumber: 4.8 Consensus size: 15
59953926 ATTTATTTTT
*
59953936 GGTTTTAGGGTTTAA
1 GGTTTTATGGTTTAA
*
59953951 --TATTTAAGGTTTAA
1 GGT-TTTATGGTTTAA
* *
59953965 GG-TCTATGGTTTAG
1 GGTTTTATGGTTTAA
*
59953979 GGTTTTATGTTTTAA
1 GGTTTTATGGTTTAA
*
59953994 GGTTTAATGGTT
1 GGTTTTATGGTT
59954006 AGTATGTTAA
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
13 1 0.02
14 22 0.52
15 19 0.45
ACGTcount: A:0.21, C:0.01, G:0.27, T:0.50
Consensus pattern (15 bp):
GGTTTTATGGTTTAA
Found at i:59954054 original size:35 final size:36
Alignment explanation
Indices: 59954015--59954141 Score: 116
Period size: 35 Copynumber: 3.5 Consensus size: 36
59954005 TAGTATGTTA
* *
59954015 AGTTTAGGGTTTAGGGTTTGTTAGTTT-GGGTTTGG
1 AGTTTAGGGTTTAAGGTTTGTTAGTTTAGGGTTTAG
* *
59954050 AGTTTAGTGTTTAAAGTTTGTT-GTTTAGGGTTTAG
1 AGTTTAGGGTTTAAGGTTTGTTAGTTTAGGGTTTAG
* * * *
59954085 TGTTTAGGATTTAAGGTTT-TTATGTTTATGGTTTTAA
1 AGTTTAGGGTTTAAGGTTTGTTA-GTTTA-GGGTTTAG
* *
59954122 AGGTTAGGGTATTAGGGTTT
1 AGTTTAGGGT-TTAAGGTTT
59954142 AATGGTTAGG
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
34 6 0.08
35 41 0.56
36 5 0.07
37 13 0.18
38 8 0.11
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.50
Consensus pattern (36 bp):
AGTTTAGGGTTTAAGGTTTGTTAGTTTAGGGTTTAG
Found at i:59954068 original size:21 final size:21
Alignment explanation
Indices: 59954044--59954083 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
59954034 GTTAGTTTGG
*
59954044 GTTTGGAGTTTAGTGTTTAAA
1 GTTTGGAGTTTAGGGTTTAAA
**
59954065 GTTTGTTGTTTAGGGTTTA
1 GTTTGGAGTTTAGGGTTTA
59954084 GTGTTTAGGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (21 bp):
GTTTGGAGTTTAGGGTTTAAA
Found at i:59954268 original size:15 final size:15
Alignment explanation
Indices: 59954248--59954279 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
59954238 ACTGTATATA
*
59954248 TTTAGGGTTTATGGT
1 TTTAGGGTTTAGGGT
59954263 TTTAGGGTTTAGGGT
1 TTTAGGGTTTAGGGT
59954278 TT
1 TT
59954280 GGTTTCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.34, T:0.53
Consensus pattern (15 bp):
TTTAGGGTTTAGGGT
Found at i:59954584 original size:41 final size:41
Alignment explanation
Indices: 59954519--59954728 Score: 217
Period size: 41 Copynumber: 5.1 Consensus size: 41
59954509 GCGCTTTCTA
* * * ***
59954519 AAAAATGCTGCTAGAGATTGAGAATTAGTGGCGCTTTTACA
1 AAAAATGCCGCTAAAGATCGAGAATTAGTGGCGCTTTTTTG
* * * **
59954560 AAAAACGCTGCTAAAGATCAAGAATTAGCAGCGCTTTTTTG
1 AAAAATGCCGCTAAAGATCGAGAATTAGTGGCGCTTTTTTG
* * * *
59954601 AAAAACGCAGCTAAAGGTCGAGAATTAGCT-GTGCTTTTTTG
1 AAAAATGCCGCTAAAGATCGAGAATTAG-TGGCGCTTTTTTG
*
59954642 AAAAATGCCGTTAAAGATCGAGAATTAGTGGCG-TTGTTTTG
1 AAAAATGCCGCTAAAGATCGAGAATTAGTGGCGCTT-TTTTG
* * *
59954683 AAAAATGCCGCTAAAGATCGAGAATTAGCGACACTTTTTTG
1 AAAAATGCCGCTAAAGATCGAGAATTAGTGGCGCTTTTTTG
59954724 AAAAA
1 AAAAA
59954729 CACCGCAAAA
Statistics
Matches: 142, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
40 3 0.02
41 137 0.96
42 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (41 bp):
AAAAATGCCGCTAAAGATCGAGAATTAGTGGCGCTTTTTTG
Found at i:59955434 original size:8 final size:8
Alignment explanation
Indices: 59955421--59955465 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
59955411 TCTCGTGATT
59955421 ATATATAC
1 ATATATAC
59955429 ATATAT-C
1 ATATATAC
59955436 A-ATA-AGC
1 ATATATA-C
*
59955443 ATATATAT
1 ATATATAC
59955451 ATATATAC
1 ATATATAC
59955459 ATATATA
1 ATATATA
59955466 TGATGAGTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
6 3 0.10
7 4 0.13
8 23 0.74
9 1 0.03
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (8 bp):
ATATATAC
Found at i:59957594 original size:9 final size:9
Alignment explanation
Indices: 59957582--59957669 Score: 92
Period size: 9 Copynumber: 10.0 Consensus size: 9
59957572 CATATCATAT
59957582 CATAACTTA
1 CATAACTTA
59957591 CATAACTTA
1 CATAACTTA
59957600 CATAACTTA
1 CATAACTTA
*
59957609 CGTAACTTA
1 CATAACTTA
59957618 CATAACTTA
1 CATAACTTA
59957627 CATAA--TA
1 CATAACTTA
*
59957634 CATAA-ATA
1 CATAACTTA
* * *
59957642 TATATCATA
1 CATAACTTA
59957651 TCATAACTTA
1 -CATAACTTA
*
59957661 AATAACTTA
1 CATAACTTA
59957670 ATTATACTTA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
7 7 0.10
8 5 0.07
9 50 0.74
10 6 0.09
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:59962755 original size:14 final size:13
Alignment explanation
Indices: 59962713--59962755 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
59962703 TTTTAAATAT
59962713 TTATAATGTTTAA
1 TTATAATGTTTAA
* *
59962726 TCATAGTCGTTTAA
1 TTATAAT-GTTTAA
59962740 TTATAATGGTTTAA
1 TTATAAT-GTTTAA
59962754 TT
1 TT
59962756 CATCGTTAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 5 0.21
14 19 0.79
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.51
Consensus pattern (13 bp):
TTATAATGTTTAA
Found at i:59966880 original size:29 final size:29
Alignment explanation
Indices: 59966869--59966941 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
59966859 TTTCTAGCTT
*
59966869 GCACACTTAGTGCCAAATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
59966898 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
59966927 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
59966942 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAC
Found at i:59968797 original size:40 final size:40
Alignment explanation
Indices: 59968689--59968798 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
59968679 ATTGAATGAT
* * * * *
59968689 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
59968729 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
59968769 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
59968799 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:59968813 original size:40 final size:39
Alignment explanation
Indices: 59968689--59968838 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
59968679 ATTGAATGAT
* * * * * * *
59968689 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
59968729 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
59968769 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
59968809 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
59968839 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:59976307 original size:40 final size:40
Alignment explanation
Indices: 59976199--59976308 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
59976189 ATTGAATGAT
* * * * *
59976199 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
59976239 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
59976279 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
59976309 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:59976323 original size:40 final size:39
Alignment explanation
Indices: 59976199--59976348 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
59976189 ATTGAATGAT
* * * * * * *
59976199 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
59976239 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
59976279 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
59976319 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
59976349 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:59980185 original size:16 final size:15
Alignment explanation
Indices: 59980138--59980186 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
59980128 TTTAAAAATA
*
59980138 TTTATATTGTTTTAT
1 TTTATATTTTTTTAT
* *
59980153 TTTAATATTTATATAT
1 TTT-ATATTTTTTTAT
59980169 TTTATATGTTTTTTAT
1 TTTATAT-TTTTTTAT
59980185 TT
1 TT
59980187 ATTGAAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (15 bp):
TTTATATTTTTTTAT
Found at i:59989368 original size:14 final size:14
Alignment explanation
Indices: 59989349--59989383 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
59989339 ACTTTTTTAT
* *
59989349 TTCTAATGATATTA
1 TTCTAACGATACTA
59989363 TTCTAACGATACTA
1 TTCTAACGATACTA
59989377 TTCTAAC
1 TTCTAAC
59989384 ATGTAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:59990058 original size:6 final size:6
Alignment explanation
Indices: 59990049--59990110 Score: 52
Period size: 6 Copynumber: 10.3 Consensus size: 6
59990039 CTAGATCACA
* * * ** * *
59990049 AGCCTG AGCCCG AGCCCA AACCCG AGAGCG AGCCTG AGCCTG AGCCCG
1 AGCCCG AGCCCG AGCCCG AGCCCG AGCCCG AGCCCG AGCCCG AGCCCG
*
59990097 AGCCCT AGCCCG AG
1 AGCCCG AGCCCG AG
59990111 ACACATCACG
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.23, C:0.40, G:0.31, T:0.06
Consensus pattern (6 bp):
AGCCCG
Found at i:59990281 original size:33 final size:33
Alignment explanation
Indices: 59990239--59990387 Score: 138
Period size: 33 Copynumber: 4.5 Consensus size: 33
59990229 ATCTTTGGGT
* * *
59990239 TGTATCCACCGCAGTACAGCGTTGCTCGGGGCC
1 TGTATCCACCGCAGTACAGCATTCCTTGGGGCC
* *
59990272 TGTATCCACCGTAGTACAGCATTCCTTTGGGCC
1 TGTATCCACCGCAGTACAGCATTCCTTGGGGCC
* * *
59990305 TGTATCCACCGTAGTGCAGCATTCCTTTGGGTCC
1 TGTATCCACCGCAGTACAGCATTCC-TTGGGGCC
* * * ****
59990339 -GTATCCACCGCAATACAACAGTCCTCCCAGCC
1 TGTATCCACCGCAGTACAGCATTCCTTGGGGCC
*
59990371 CGTATCCACCGCAGTAC
1 TGTATCCACCGCAGTAC
59990388 TCCACTCCTC
Statistics
Matches: 95, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
32 3 0.03
33 86 0.91
34 6 0.06
ACGTcount: A:0.19, C:0.35, G:0.21, T:0.24
Consensus pattern (33 bp):
TGTATCCACCGCAGTACAGCATTCCTTGGGGCC
Found at i:59991300 original size:64 final size:62
Alignment explanation
Indices: 59991206--59991366 Score: 272
Period size: 64 Copynumber: 2.6 Consensus size: 62
59991196 GGGATGTTAC
59991206 ACAAACTTTGTAATAT-AATTTTTTTATATAAATTAAATACATTACAACATTAAAAATTGG-
1 ACAAACTTTGTAATATAAATTTTTTTATATAAATTAAATACATTACAACATTAAAAATTGGA
*
59991266 ACAAACTTTGTAATATAAATTTATTTTTTATATAAATTAAATACATTACAACATTGAAAATTGGA
1 ACAAACTTTGTAATATAAA--T-TTTTTTATATAAATTAAATACATTACAACATTAAAAATTGGA
59991331 ACAAACTTTGTAATATAAATTTTTTTATATAAATTA
1 ACAAACTTTGTAATATAAATTTTTTTATATAAATTA
59991367 CATAAGCTTA
Statistics
Matches: 95, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
60 16 0.17
61 2 0.02
62 16 0.17
63 2 0.02
64 40 0.42
65 19 0.20
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.42
Consensus pattern (62 bp):
ACAAACTTTGTAATATAAATTTTTTTATATAAATTAAATACATTACAACATTAAAAATTGGA
Found at i:59996028 original size:44 final size:42
Alignment explanation
Indices: 59995978--59996137 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 42
59995968 TATGTGTTAT
*
59995978 CGTGTAAGACCACGTTTGGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TT-TGATTTA
* *
59996022 CGTGTAAGACCATGTCTGGGACGTTGGGCATCGTATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACATT-GGCATCG-ATTTGATTTA
* ** * *
59996065 TGAATAAGACC-CTGTCTGGGATAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCG--ATTTGATTTA
*
59996108 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
59996138 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 9 0.10
43 46 0.49
44 29 0.31
45 9 0.10
46 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGATTTA
Found at i:59997971 original size:40 final size:40
Alignment explanation
Indices: 59997892--59998134 Score: 330
Period size: 40 Copynumber: 6.1 Consensus size: 40
59997882 TGGGATTTAA
* *
59997892 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
59997931 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
59997971 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
59998011 CCGAATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
59998051 CCAGATGTAATAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59998091 CCGGA-ACTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
59998131 CCGG
1 CCGG
59998135 TTATCATCCG
Statistics
Matches: 185, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 17 0.09
40 167 0.90
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60001194 original size:40 final size:40
Alignment explanation
Indices: 60001139--60001287 Score: 226
Period size: 40 Copynumber: 3.7 Consensus size: 40
60001129 TATTCGAATG
* * *
60001139 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
*
60001179 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
60001219 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
60001259 ATATCCGGGCTAAGACCCAAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
60001288 CGCGAGTTGC
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
Found at i:60001301 original size:40 final size:40
Alignment explanation
Indices: 60001139--60001320 Score: 224
Period size: 40 Copynumber: 4.6 Consensus size: 40
60001129 TATTCGAATG
* * * *
60001139 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
60001179 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
60001219 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * * *
60001259 ATATCCGGGCTAAGACCCAAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
60001299 ATATAC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
60001321 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 13 0.10
40 109 0.87
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:60003193 original size:23 final size:23
Alignment explanation
Indices: 60003141--60003193 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
60003131 TTTAGCCATG
*
60003141 TGATATGGCTTGGTTTTGGTTGA
1 TGATATGGCTTGATTTTGGTTGA
** *
60003164 TCTTATGGTTTGATTTTGGTAT-A
1 TGATATGGCTTGATTTTGGT-TGA
60003187 TGATATG
1 TGATATG
60003194 TAACGCAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.51
Consensus pattern (23 bp):
TGATATGGCTTGATTTTGGTTGA
Found at i:60005854 original size:40 final size:40
Alignment explanation
Indices: 60005780--60005988 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
60005770 TCTTTGGGAT
** * *
60005780 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
60005818 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
60005858 TTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
60005898 TTAGCCC-GATATAG-CAAC-CGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
60005936 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
60005976 TTAGCTCGGATAT
1 TTAGCCCGGATAT
60005989 CATTCGAATA
Statistics
Matches: 141, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
38 29 0.21
39 31 0.22
40 81 0.57
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:60005939 original size:78 final size:80
Alignment explanation
Indices: 60005775--60005988 Score: 244
Period size: 78 Copynumber: 2.7 Consensus size: 80
60005765 AAGTATCTTT
* * * *
60005775 GGGAT-TTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTCACT
1 GGGATCTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTCACT
*
60005838 AGCATAAATGCCTTC
66 AGCACAAATGCCTTC
* *
60005853 GGGA-CTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCC-GATATAG-CAA
1 GGGATCTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTC-A
*
60005915 C-CGCACAAATGCCTTC
64 CTAGCACAAATGCCTTC
* * * *
60005931 -GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCTCGGATAT
1 GGGATCTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
60005989 CATTCGAATA
Statistics
Matches: 116, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
77 3 0.03
78 63 0.54
79 30 0.26
80 20 0.17
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (80 bp):
GGGATCTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTCACT
AGCACAAATGCCTTC
Found at i:60010620 original size:40 final size:40
Alignment explanation
Indices: 60010561--60010743 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
60010551 CTACTCGTTC
* *
60010561 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
60010601 ATTGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
60010641 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
60010681 AATGCCTTCGGTACTTAGCCCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
*
60010721 AATGCCTTCGGGACTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGG
60010744 TTACCATCCA
Statistics
Matches: 128, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 128 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:60019938 original size:40 final size:40
Alignment explanation
Indices: 60019891--60020032 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
60019881 AAATTGAATA
* * *
60019891 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTTGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
60019931 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
60019971 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
60020011 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
60020033 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:60020033 original size:40 final size:39
Alignment explanation
Indices: 60019930--60020058 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
60019920 TGCTTGAAAT
* * *
60019930 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
60019970 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
60020010 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
60020050 TATATCCGG
1 TATATCCGG
60020059 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:60023567 original size:43 final size:43
Alignment explanation
Indices: 60023412--60023568 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
60023402 TGTGTTATCG
* * *
60023412 TGTAAGACCACGTCTGGGATGTTGGCAT-TA-ACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATA-TT-TGA-TTACA
* *
60023456 TGTAAGACCACGTCCT-GGACATTGGCATCG-TATTTGATTTCA
1 TGTAAGACCACGT-CTGGGACGTTGGCATCGATATTTGATTACA
*
60023498 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTTGATTACA
*
60023541 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
60023569 TGTATGAGCT
Statistics
Matches: 94, Mismatches: 10, Indels: 19
0.76 0.08 0.15
Matches are distributed among these distances:
41 3 0.03
42 26 0.28
43 36 0.38
44 26 0.28
45 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:60024149 original size:23 final size:23
Alignment explanation
Indices: 60024097--60024149 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
60024087 TTTAGCCATG
*
60024097 TGATATGGCTTGGTTTTGGTTGA
1 TGATATGGCTTGATTTTGGTTGA
** *
60024120 TCTTATGGTTTGATTTTGGTAT-A
1 TGATATGGCTTGATTTTGGT-TGA
60024143 TGATATG
1 TGATATG
60024150 TGATGCAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.51
Consensus pattern (23 bp):
TGATATGGCTTGATTTTGGTTGA
Found at i:60025720 original size:16 final size:16
Alignment explanation
Indices: 60025682--60025721 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
60025672 TCAACCCCTT
60025682 TTTTTATTATTTTTTAA
1 TTTTT-TTATTTTTTAA
**
60025699 AATTTTTATTTTTTAA
1 TTTTTTTATTTTTTAA
60025715 TTTTTTT
1 TTTTTTT
60025722 TCTACTGTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTTTATTTTTTAA
Found at i:60034517 original size:24 final size:23
Alignment explanation
Indices: 60034490--60034547 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
60034480 TCGTTCTAGT
* * *
60034490 CAAGCCACTCATTAGTGTTGTGGA
1 CAAGCCACTCA-CAGCGTTATGGA
*
60034514 CAAGCCATTCACAGCGTTATGGA
1 CAAGCCACTCACAGCGTTATGGA
*
60034537 CATGCCACTCA
1 CAAGCCACTCA
60034548 ATATCATTGT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 18 0.64
24 10 0.36
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (23 bp):
CAAGCCACTCACAGCGTTATGGA
Found at i:60036169 original size:42 final size:42
Alignment explanation
Indices: 60036005--60036158 Score: 173
Period size: 42 Copynumber: 3.6 Consensus size: 42
60035995 TACCATACCA
* * * *
60036005 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * * *
60036047 ATGCTAATAGCCTAGCTATGGTCTTACACGAAGTCTCATATTG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
60036090 ATGCCATATCCCAGATATGGTCCTACACAAAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
60036132 ATGCCATATGCCAGATATGGTTTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
60036159 TGTAGTCTCA
Statistics
Matches: 90, Mismatches: 21, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 58 0.64
43 32 0.36
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:60037427 original size:42 final size:41
Alignment explanation
Indices: 60037320--60037427 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 41
60037310 TATCAGTAGG
***
60037320 CATGCTTAACATGCGAATCAAATCTAAGATCAACATAGTTGG
1 CATGCTTAACATGC-AATCAAATCTAAGATCAACATAGTCAA
* * * *
60037362 CATGCTTAACATGGCAATAAAATCTAAGTTTATCATAGTCAA
1 CATGCTTAACAT-GCAATCAAATCTAAGATCAACATAGTCAA
60037404 CATGCTTAACATGCAAATCAAATC
1 CATGCTTAACATGC-AATCAAATC
60037428 CTAGTTAATA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.04
42 52 0.93
43 2 0.04
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (41 bp):
CATGCTTAACATGCAATCAAATCTAAGATCAACATAGTCAA
Found at i:60037942 original size:19 final size:19
Alignment explanation
Indices: 60037918--60037958 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
60037908 TTATCTATCG
60037918 TCCAAGTGAGAGTACTTTT
1 TCCAAGTGAGAGTACTTTT
60037937 TCCAAGTGAGAGTACTTTT
1 TCCAAGTGAGAGTACTTTT
60037956 TCC
1 TCC
60037959 TAAGGCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (19 bp):
TCCAAGTGAGAGTACTTTT
Found at i:60039680 original size:19 final size:19
Alignment explanation
Indices: 60039656--60039692 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60039646 AAAATGGGTA
60039656 AGTTATGCCTATAAATTTT
1 AGTTATGCCTATAAATTTT
*
60039675 AGTTATGCCTATGAATTT
1 AGTTATGCCTATAAATTT
60039693 ATGATGACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (19 bp):
AGTTATGCCTATAAATTTT
Found at i:60044595 original size:21 final size:21
Alignment explanation
Indices: 60044569--60044618 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
60044559 GGTTGTTTAG
*
60044569 ATGTTTTATGATAGATTATTA
1 ATGTTTTATGATAGATTAATA
* * *
60044590 ATGTTTGAAGCTAGATTAATA
1 ATGTTTTATGATAGATTAATA
60044611 A-GTTTTAT
1 ATGTTTTAT
60044619 AAAGTGATTT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (21 bp):
ATGTTTTATGATAGATTAATA
Found at i:60045261 original size:23 final size:24
Alignment explanation
Indices: 60045201--60045263 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 24
60045191 GACTCACCAC
60045201 AGCTCATAT-GAGCTTACTAATTT
1 AGCTCATATGGAGCTTACTAATTT
* * *
60045224 AGCTCGTAAGG-GCTTACTATTTT
1 AGCTCATATGGAGCTTACTAATTT
60045247 AGCTCAT-TGGAGCTTAC
1 AGCTCATATGGAGCTTAC
60045264 CGATTCAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 2 0.06
23 30 0.91
24 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (24 bp):
AGCTCATATGGAGCTTACTAATTT
Found at i:60045303 original size:22 final size:23
Alignment explanation
Indices: 60045278--60045336 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
60045268 TCAGTTGGAA
60045278 AGAGCTTACTGTT-CAACTCAAT
1 AGAGCTTACTGTTGCAACTCAAT
* * * *
60045300 AGAGATTACCGTTTGTAGCTCAAT
1 AGAGCTTACTG-TTGCAACTCAAT
60045324 AGAGCTTACTGTT
1 AGAGCTTACTGTT
60045337 TATCAGCACA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
22 9 0.31
23 4 0.14
24 16 0.55
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (23 bp):
AGAGCTTACTGTTGCAACTCAAT
Found at i:60047923 original size:131 final size:131
Alignment explanation
Indices: 60047686--60047949 Score: 492
Period size: 131 Copynumber: 2.0 Consensus size: 131
60047676 TGCTCAGAAG
*
60047686 ATCATTTAGATTACGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
1 ATCATTCAGATTACGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
*
60047751 GTATGATAATTAAAGAATGTATTACAAGAATTTCTTTTGAATTGATTTTCATTAATGGATGAGAT
66 GTATGATAATTAAAGAATGTATTACAAGAATTTCTTCTGAATTGATTTTCATTAATGGATGAGAT
60047816 A
131 A
*
60047817 ATCATTCAGATTATGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
1 ATCATTCAGATTACGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
*
60047882 GTATGATAATTAAAGAATGTATTACCAGAATTTCTTCTGAATTGATTTTCATTAATGGATGAGAT
66 GTATGATAATTAAAGAATGTATTACAAGAATTTCTTCTGAATTGATTTTCATTAATGGATGAGAT
60047947 A
131 A
60047948 AT
1 AT
60047950 GTGGGATTAG
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
131 129 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (131 bp):
ATCATTCAGATTACGCAGTGTTACTGTTAAGGAAGAAATTTACTTTAGTTAACTAAATTATTCAG
GTATGATAATTAAAGAATGTATTACAAGAATTTCTTCTGAATTGATTTTCATTAATGGATGAGAT
A
Found at i:60051830 original size:23 final size:23
Alignment explanation
Indices: 60051780--60051872 Score: 73
Period size: 23 Copynumber: 4.1 Consensus size: 23
60051770 GGACTCACCA
* *
60051780 CAGCTCGTATGAGCTTATTGATT
1 CAGCTCGTAAGAGCTTACTGATT
* *
60051803 CAGCTCGTAAGAGCTTCCTGTTT
1 CAGCTCGTAAGAGCTTACTGATT
* * ** *
60051826 TAGCTCATTGGAGATTATCT-ATT
1 CAGCTCGTAAGAGCTTA-CTGATT
*
60051849 CAGCTCGAAAGAGCTTACTG-TT
1 CAGCTCGTAAGAGCTTACTGATT
60051871 CA
1 CA
60051873 ACTCAATAAA
Statistics
Matches: 51, Mismatches: 17, Indels: 5
0.70 0.23 0.07
Matches are distributed among these distances:
22 6 0.12
23 43 0.84
24 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (23 bp):
CAGCTCGTAAGAGCTTACTGATT
Found at i:60057530 original size:29 final size:28
Alignment explanation
Indices: 60057438--60057540 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
60057428 TACTCAATCA
** *
60057438 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-ACATTCAAGCT
* * * *
60057467 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
60057496 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
* *
60057525 CACACACTCAGTGCCA
1 CGCACACTTAGTGCCA
60057541 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:60059948 original size:52 final size:52
Alignment explanation
Indices: 60059885--60060000 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
60059875 GATATGACAT
*
60059885 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
60059937 TGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
60059989 TGTGCTAAGTGA
1 TGTGCTAAGTGA
60060001 GAAATTTCCC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:60059953 original size:28 final size:27
Alignment explanation
Indices: 60059885--60060000 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
60059875 GATATGACAT
*
60059885 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
60059912 --T-CTAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
60059937 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
60059964 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
60059988 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
60060001 GAAATTTCCC
Statistics
Matches: 78, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
24 43 0.55
25 3 0.04
27 3 0.04
28 29 0.37
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:60060079 original size:51 final size:51
Alignment explanation
Indices: 60060024--60060170 Score: 242
Period size: 51 Copynumber: 2.9 Consensus size: 51
60060014 TGAACCTTAG
60060024 GAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
60060075 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
60060126 GAATAAAATAGCTTTTG-CTACAAGGGTGGTACTATGTGAAGGCCA
1 GAATAAAATAGCTTTAGAC-ACAAGTGTGGTACTATGTGAAGGCCA
60060171 TCGTGTATCC
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
50 1 0.01
51 89 0.99
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:60061804 original size:40 final size:40
Alignment explanation
Indices: 60061759--60061925 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60061749 CGGAATATAA
60061759 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60061799 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
60061839 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60061879 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60061918 CCGGATAT
1 CCGGATAT
60061926 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60066197 original size:30 final size:30
Alignment explanation
Indices: 60066142--60066272 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
60066132 ATAGTGAATC
*
60066142 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
60066171 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
60066201 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
60066229 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
60066259 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60066273 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:60066252 original size:58 final size:58
Alignment explanation
Indices: 60066141--60066272 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
60066131 TATAGTGAAT
* * * * *
60066141 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
60066200 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
60066258 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
60066273 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:60074148 original size:30 final size:30
Alignment explanation
Indices: 60074093--60074223 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
60074083 ATAGTGAATC
*
60074093 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
60074122 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
60074152 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
60074180 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
60074210 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60074224 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:60074203 original size:58 final size:58
Alignment explanation
Indices: 60074092--60074223 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
60074082 TATAGTGAAT
* * * * *
60074092 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
60074151 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
60074209 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
60074224 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:60080066 original size:19 final size:19
Alignment explanation
Indices: 60080042--60080081 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
60080032 TGAAAATGTG
60080042 TAAGTTATGCCCATATATT
1 TAAGTTATGCCCATATATT
* *
60080061 TAAGTTATGCCTATGTATT
1 TAAGTTATGCCCATATATT
60080080 TA
1 TA
60080082 TGATGACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (19 bp):
TAAGTTATGCCCATATATT
Found at i:60087514 original size:41 final size:41
Alignment explanation
Indices: 60087437--60087514 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
60087427 TCTGATATTT
*
60087437 ATTCACTGGCAATAAGCCTGCCAGGCACGAAGCCCGATCAA
1 ATTCACTGGCAATAAGCCTGCCAGGCACGAAACCCGATCAA
* *
60087478 ATTCTCTGGCACAT-AGCCTGCTAGGCTA-GAAACCCGA
1 ATTCACTGGCA-ATAAGCCTGCCAGGC-ACGAAACCCGA
60087515 ATATCATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 29 0.91
42 3 0.09
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (41 bp):
ATTCACTGGCAATAAGCCTGCCAGGCACGAAACCCGATCAA
Found at i:60093852 original size:25 final size:24
Alignment explanation
Indices: 60093819--60093870 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 24
60093809 TCTCCGACAC
60093819 ATAGCTGCTAGGCTAAAAACCTGA
1 ATAGCTGCTAGGCTAAAAACCTGA
*
60093843 ATAGCCTGCTAGGCTAGAAACCTGA
1 ATAG-CTGCTAGGCTAAAAACCTGA
60093868 ATA
1 ATA
60093871 TCATTTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 4 0.15
25 22 0.85
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (24 bp):
ATAGCTGCTAGGCTAAAAACCTGA
Found at i:60107758 original size:30 final size:30
Alignment explanation
Indices: 60107722--60107822 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
60107712 GACAAGATTG
* * *
60107722 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
60107752 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
60107780 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
60107809 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
60107823 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:60107834 original size:29 final size:28
Alignment explanation
Indices: 60107751--60107826 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
60107741 AAAATTGTAC
* *
60107751 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
60107779 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
60107808 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
60107827 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:60114754 original size:30 final size:30
Alignment explanation
Indices: 60114718--60114818 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
60114708 GACAAGATTG
* * *
60114718 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
60114748 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
60114776 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
60114805 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
60114819 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:60114830 original size:29 final size:28
Alignment explanation
Indices: 60114747--60114822 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
60114737 AAAATTGTAC
* *
60114747 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
60114775 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
60114804 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
60114823 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:60122421 original size:29 final size:29
Alignment explanation
Indices: 60122353--60122452 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
60122343 GTGACGAGAT
*
60122353 TGGCACTGAGTGTGCGAGCTTG--T-A-A
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
* * *
60122378 TGTACACTAAGTGTGCGAGTTTGGA-CTATA
1 TG-GCACTAAGTGTGCGAGCTTGAATC-ATA
* *
60122408 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
60122437 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60122453 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
25 2 0.03
26 17 0.29
29 36 0.61
30 4 0.07
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:60130417 original size:29 final size:29
Alignment explanation
Indices: 60130355--60130457 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
60130345 GTGACGAGAT
* * *
60130355 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
60130384 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
60130413 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
60130442 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60130458 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:60132517 original size:43 final size:43
Alignment explanation
Indices: 60132465--60132601 Score: 220
Period size: 43 Copynumber: 3.2 Consensus size: 43
60132455 CAAATAGTAT
* *
60132465 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCTCAAAGG
1 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG
60132508 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG
1 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG
* * * *
60132551 CCCGAATACACATCACCGGCACAAAGCATGCGAGGCACGAAGT
1 CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG
60132594 CCCGAATA
1 CCCGAATA
60132602 TAATACCAGC
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.32, C:0.34, G:0.23, T:0.10
Consensus pattern (43 bp):
CCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG
Found at i:60133881 original size:2 final size:2
Alignment explanation
Indices: 60133869--60133899 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
60133859 TCACTTTCAA
60133869 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60133900 TCGACTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60147758 original size:93 final size:93
Alignment explanation
Indices: 60147645--60147814 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
60147635 GCCCATAAGT
* *
60147645 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60147710 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* * *
60147738 GAACTTGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60147803 CGAGTTCGGATG
66 CGAGTTCGGATG
60147815 TCCAAATATC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:60147812 original size:46 final size:46
Alignment explanation
Indices: 60147637--60147812 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
60147627 TGTAACCCGC
* * **
60147637 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
60147683 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACG-CTCGCAT
* *** *
60147729 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
60147776 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60147813 TGTCCAAATA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
46 71 0.68
47 34 0.32
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:60150227 original size:15 final size:15
Alignment explanation
Indices: 60150207--60150282 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
60150197 AAACCGAATA
60150207 AAAGAAATCCAAGAT
1 AAAGAAATCCAAGAT
* *
60150222 AGAGAAA-CCCAGAAT
1 AAAGAAATCCAAG-AT
60150237 AAAGAAATCC-AGAAT
1 AAAGAAATCCAAG-AT
* *
60150252 AAAGAGATCCAGGAT
1 AAAGAAATCCAAGAT
*
60150267 AAAGAAACCCAAGAT
1 AAAGAAATCCAAGAT
60150282 A
1 A
60150283 CGATACTATG
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 43 0.86
16 3 0.06
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
AAAGAAATCCAAGAT
Found at i:60150241 original size:30 final size:30
Alignment explanation
Indices: 60150193--60150282 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
60150183 CAAAGATAAC
60150193 AAGAAAACC-GAATAAAAGAAATCCAAGATA
1 AAGAAAACCAGAAT-AAAGAAATCCAAGATA
* *
60150223 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
60150253 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
60150283 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.58, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:60156750 original size:40 final size:40
Alignment explanation
Indices: 60156695--60156820 Score: 234
Period size: 40 Copynumber: 3.1 Consensus size: 40
60156685 TATTCGAATG
60156695 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
60156735 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
60156775 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
60156815 ATATCC
1 ATATCC
60156821 CCGAAGGCAT
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:60156824 original size:30 final size:30
Alignment explanation
Indices: 60156790--60156850 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
60156780 CGGGCTAAGT
* *
60156790 CCCGAAGGCTTTTGTGCTA-TTGACTATATC
1 CCCGAAGGCATTTGTGCGAGTTG-CTATATC
60156820 CCCGAAGGCATTTGTGCGAGTTGCTATATC
1 CCCGAAGGCATTTGTGCGAGTTGCTATATC
60156850 C
1 C
60156851 GGCTAAATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 25 0.89
31 3 0.11
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (30 bp):
CCCGAAGGCATTTGTGCGAGTTGCTATATC
Found at i:60164828 original size:40 final size:40
Alignment explanation
Indices: 60164773--60164996 Score: 353
Period size: 40 Copynumber: 5.6 Consensus size: 40
60164763 TATTCGAATG
60164773 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
60164813 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
60164853 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
60164893 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
60164933 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
60164973 ATATCC-GGCTAAATCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
60164997 CTTGGGTTTG
Statistics
Matches: 169, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 15 0.09
40 151 0.89
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:60168230 original size:40 final size:40
Alignment explanation
Indices: 60168185--60168391 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
60168175 CGGAATACAA
*
60168185 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
60168225 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
60168265 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
60168305 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTCAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * *
60168345 CCGGATATAATTACTAGCATAAATGTCTTC-GGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
60168384 CCGGATAT
1 CCGGATAT
60168392 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 16 0.11
40 122 0.87
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:60171340 original size:45 final size:45
Alignment explanation
Indices: 60171284--60171416 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
60171274 TGATATCATT
* *
60171284 TCACCAGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
60171329 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
60171374 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCTCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
60171417 CCGTACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:60179499 original size:45 final size:45
Alignment explanation
Indices: 60179442--60179546 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
60179432 ACTAGGCTCG
* * *
60179442 AAGGCCCGAATAGTATCTCACTAGCATTATAGACTGCTAAACTCA
1 AAGGCCCAAATAGTATCTCACCAGCATCATAGACTGCTAAACTCA
* * * * **
60179487 AAGGTCCAAATAGTATCTTACCGGCATCATAGCCTGCTAGGCTCA
1 AAGGCCCAAATAGTATCTCACCAGCATCATAGACTGCTAAACTCA
*
60179532 AAGGCCCGAATAGTA
1 AAGGCCCAAATAGTA
60179547 CCGTACAATA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (45 bp):
AAGGCCCAAATAGTATCTCACCAGCATCATAGACTGCTAAACTCA
Found at i:60181265 original size:55 final size:53
Alignment explanation
Indices: 60181167--60181295 Score: 134
Period size: 55 Copynumber: 2.4 Consensus size: 53
60181157 CAAAGGTTTC
* * * * *
60181167 TAAGGCAAGGAAATCATGTAAGACCATGTCAATACATGACATTGATAAGTTACTA
1 TAAGGCAAGGATACCATGTAAAACAATGCCAATACATGACATTGATAAGTT-C-A
* * * * *
60181222 TAAGGCAAAGG-TCCCATGTAAAACAATGCCAATGCATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGATACCATGTAAAACAATGCCAATACATGACATTGATAAGTTCA
60181275 TAAGGCAAGGATACCATGTAA
1 TAAGGCAAGGATACCATGTAA
60181296 GACCATGTCA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.07
53 16 0.26
54 1 0.02
55 36 0.59
56 4 0.07
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (53 bp):
TAAGGCAAGGATACCATGTAAAACAATGCCAATACATGACATTGATAAGTTCA
Found at i:60181313 original size:53 final size:53
Alignment explanation
Indices: 60181167--60181372 Score: 174
Period size: 49 Copynumber: 3.9 Consensus size: 53
60181157 CAAAGGTTTC
* * * * *
60181167 TAAGGCAAGGAAATCATGTAAGACCATGTCAATACATGACATTGATAAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-A
* * * * *
60181222 TAAGGCAAAGG-TCCCATGTAAAACAATGCCAATG-CATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGATACCATGTAAGACCATGTCAA-GACATGGCATTGGTAAGTTCA
*
60181275 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCA
* * * * *
60181326 TCAA---AAGGATACCACGTAAGACCATGACAAGTCATGGTAATGGTAAG
1 T-AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
60181373 GTACCCACGT
Statistics
Matches: 126, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
49 39 0.31
51 1 0.01
52 7 0.06
53 39 0.31
54 1 0.01
55 35 0.28
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (53 bp):
TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCA
Found at i:60181585 original size:16 final size:16
Alignment explanation
Indices: 60181564--60181595 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60181554 ATAAATTTGA
60181564 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
60181580 TTAAGTAAGTGAGTAT
1 TTAAGTAAGTAAGTAT
60181596 GTGAAGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:60188565 original size:55 final size:54
Alignment explanation
Indices: 60188478--60188732 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
60188468 ATTAGGGTTT
*
60188478 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGCC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGCC
* * * * * *
60188533 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAA-GCC
* * * * *
60188589 AAGG-TCCCATGTAAGACCATGCCAAGGCATGG-TATTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGCC
*
60188641 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGCC
* * *
60188690 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
60188733 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
49 40 0.24
52 8 0.05
53 37 0.22
54 12 0.07
55 64 0.38
56 6 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGCC
Found at i:60188684 original size:108 final size:110
Alignment explanation
Indices: 60188485--60188685 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
60188475 TTTAAGGATA
*
60188485 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGCCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGCCAAGGAAACCATGTAAGA
*
60188550 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
60188595 CCATGTAAGACCATGCCAAGGCATGG-TATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGCCAAGGAAACCATGTAAG
*
60188657 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
60188686 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGCCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:60188729 original size:108 final size:102
Alignment explanation
Indices: 60188478--60188734 Score: 268
Period size: 108 Copynumber: 2.4 Consensus size: 102
60188468 ATTAGGGTTT
*
60188478 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGCCAAGGAAATCA
1 AAGGATACCATGTAAGACCATG-CAA-GCATGGCAA-TGGTAAGGTTTCTAAGCCAAGGAAACCA
* *
60188543 TGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTAT
63 TGTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAA
* * * * *
60188583 AAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGGTATTGGTGA-G-TTCATAAGGCAAGGA
1 AAGG---A--TACCATGTAAGACCATG-CAA-GCATGGCAATGGTAAGGTTTC-TAAGCCAAGGA
* * *
60188646 TACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA
58 AACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAA
*
60188690 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGT
1 AAGGATACCATGTAAGACCATG-CAAG-CATGGCAATGGTAAGGT
60188735 ACCCGTGTAT
Statistics
Matches: 126, Mismatches: 17, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
101 1 0.01
102 29 0.23
103 1 0.01
104 1 0.01
105 4 0.03
107 8 0.06
108 49 0.39
109 5 0.04
110 28 0.22
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (102 bp):
AAGGATACCATGTAAGACCATGCAAGCATGGCAATGGTAAGGTTTCTAAGCCAAGGAAACCATGT
AAGACCATGTCAAGACATGGCAATGATAAGTTACTAA
Found at i:60188827 original size:23 final size:24
Alignment explanation
Indices: 60188801--60188848 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
60188791 AAGGTAAAGT
*
60188801 AAGGTAACACGAGTT-ATACTAAA
1 AAGGTAACACAAGTTCATACTAAA
* *
60188824 AAGGTAAGACAAGTTCATGCTAAA
1 AAGGTAACACAAGTTCATACTAAA
60188848 A
1 A
60188849 GAGAAAAGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (24 bp):
AAGGTAACACAAGTTCATACTAAA
Found at i:60198226 original size:35 final size:35
Alignment explanation
Indices: 60198187--60198275 Score: 108
Period size: 35 Copynumber: 2.5 Consensus size: 35
60198177 AATCGACTCA
* * *
60198187 AAAAATGTTGGGATAGACC-ATTCTATGCCAACCAT
1 AAAAAGGTTGGGATAGACCGATT-TAAGACAACCAT
* * *
60198222 AAAAAGGTTGAGATAGACCGGTTTAAGACAACCTT
1 AAAAAGGTTGGGATAGACCGATTTAAGACAACCAT
60198257 AAAAAGGTTGGGATAGACC
1 AAAAAGGTTGGGATAGACC
60198276 TTGTCTACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
35 44 0.96
36 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (35 bp):
AAAAAGGTTGGGATAGACCGATTTAAGACAACCAT
Found at i:60198647 original size:50 final size:50
Alignment explanation
Indices: 60198592--60198692 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
60198582 GCACTTTATC
*
60198592 CCCAAAGATTACAAAACAAAATTAAAATCTTAGTATCAAAATTCAATCCT
1 CCCAAAGATTACAAAACAAAATTAAAAGCTTAGTATCAAAATTCAATCCT
60198642 CCCAAAGATTACAAAACAAAATTAAAAGCTTAGTATCAAAATTCAATCCT
1 CCCAAAGATTACAAAACAAAATTAAAAGCTTAGTATCAAAATTCAATCCT
60198692 C
1 C
60198693 ACTTTTGTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.50, C:0.21, G:0.05, T:0.25
Consensus pattern (50 bp):
CCCAAAGATTACAAAACAAAATTAAAAGCTTAGTATCAAAATTCAATCCT
Found at i:60199872 original size:26 final size:26
Alignment explanation
Indices: 60199843--60199902 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
60199833 GGGTGTAATG
*
60199843 GTAATTTTGC-ACCTAGGGGTATATC-A
1 GTAATTTT-CAACATAGGGGTAT-TCAA
60199869 GTAATTTTCATACATAGGGGTATTCAA
1 GTAATTTTCA-ACATAGGGGTATTCAA
60199896 GTAATTT
1 GTAATTT
60199903 AACTATTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.03
26 10 0.33
27 19 0.63
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (26 bp):
GTAATTTTCAACATAGGGGTATTCAA
Found at i:60200167 original size:8 final size:8
Alignment explanation
Indices: 60200141--60200170 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
60200131 CAAAATACTA
60200141 GCTTTTCG
1 GCTTTTCG
*
60200149 GCATTTCG
1 GCTTTTCG
60200157 GCTTTTCG
1 GCTTTTCG
60200165 GCTTTT
1 GCTTTT
60200171 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:60201210 original size:24 final size:25
Alignment explanation
Indices: 60201159--60201211 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
60201149 ATACTCAGAT
* * *
60201159 TCCTTAATTTTCTCCCCTTATCAGC
1 TCCTAAATCTTCTCCCCTTATCACC
*
60201184 TCCTAAATCTTCT-CCCTTATCCCC
1 TCCTAAATCTTCTCCCCTTATCACC
60201208 TCCT
1 TCCT
60201212 TACTCAATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.15, C:0.42, G:0.02, T:0.42
Consensus pattern (25 bp):
TCCTAAATCTTCTCCCCTTATCACC
Found at i:60207090 original size:17 final size:17
Alignment explanation
Indices: 60207070--60207108 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
60207060 ATTTTATTAA
60207070 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
*
60207087 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTC
60207104 GTTTT
1 GTTTT
60207109 CCTTTTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.59
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:60212318 original size:16 final size:16
Alignment explanation
Indices: 60212297--60212336 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
60212287 AAGGAAAAAG
60212297 TAAATTAATAAATAAT
1 TAAATTAATAAATAAT
60212313 TAAATTAATAAATAAT
1 TAAATTAATAAATAAT
60212329 TAAATTAA
1 TAAATTAA
60212337 ATTAAATTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAATTAATAAATAAT
Found at i:60216331 original size:11 final size:11
Alignment explanation
Indices: 60216315--60216346 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
60216305 GGAGCGAAAG
60216315 AAGCCAAAAAC
1 AAGCCAAAAAC
60216326 AAGCCAAAAAC
1 AAGCCAAAAAC
60216337 AAGCCAAAAA
1 AAGCCAAAAA
60216347 GGGACAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.66, C:0.25, G:0.09, T:0.00
Consensus pattern (11 bp):
AAGCCAAAAAC
Found at i:60217846 original size:140 final size:139
Alignment explanation
Indices: 60217593--60217960 Score: 447
Period size: 140 Copynumber: 2.6 Consensus size: 139
60217583 TCAACATGTG
* * *
60217593 TATCCCAACCCTTATACAAATAGTTGGCCAAA-CTGTATATCCGCAAGTCTATCCCAAAACTTAG
1 TATCCCTACCCTTATACAAATAGTTGGCCAAAGC-GTATGTCCGCAAGTCTATCCCAACACTTA-
* * ***
60217657 GAAAACGTTAG-CCCAAAAGTGTCGGCATAGTGTTGGACAAAGCCAACTCTTATTTACGTGTTGC
64 GAAAA-GTTCGACCCAAAAGTGTCGACATAGTGTTGGACAAAGCCAACTCTTATTTAAACGTTGC
*
60217721 CTTAGGCATGCA
128 CTTAGACATGCA
* * * **
60217733 TATCCCTACCCTTATAAAAATAGTTGGACAAAGCATATGTAGGCAAGTCTATCCCAACACTTACG
1 TATCCCTACCCTTATACAAATAGTTGGCCAAAGCGTATGTCCGCAAGTCTATCCCAACACTTA-G
* *
60217798 -AAAGTATCGACCCAAAAGTGTCGACATAGTGTTGGACAAAGTCGACTCTTATTTAAACGTTGCC
65 AAAAGT-TCGACCCAAAAGTGTCGACATAGTGTTGGACAAAGCCAACTCTTATTTAAACGTTGCC
60217862 TTAGACATGCA
129 TTAGACATGCA
* * * *
60217873 TAT-CCTGACCCTTGTACAAAGAGTTAGCCAAAGCGTATGTCTGCAAGTCTATCCCAACACTTAG
1 TATCCCT-ACCCTTATACAAATAGTTGGCCAAAGCGTATGTCCGCAAGTCTATCCCAACACTTAG
**
60217937 AAAAGTGTCGACAGAAAAGTGTCG
65 AAAAGT-TCGACCCAAAAGTGTCG
60217961 TCTTAGGACT
Statistics
Matches: 195, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
138 2 0.01
139 9 0.05
140 183 0.94
141 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (139 bp):
TATCCCTACCCTTATACAAATAGTTGGCCAAAGCGTATGTCCGCAAGTCTATCCCAACACTTAGA
AAAGTTCGACCCAAAAGTGTCGACATAGTGTTGGACAAAGCCAACTCTTATTTAAACGTTGCCTT
AGACATGCA
Found at i:60220363 original size:46 final size:46
Alignment explanation
Indices: 60220294--60220426 Score: 151
Period size: 46 Copynumber: 2.9 Consensus size: 46
60220284 ATAATTTCAC
* * *
60220294 CCATAATGAACTCGGAATGCAACTCAACGAGCTCAGGTG-TTCACAT
1 CCATAATGAACTCGAAACGCAACTCAACGAGCTCAGATGCTT-ACAT
* * * * *
60220340 CCATAATGAACTCGAAACACAACTCAACAAGTTCCGATGCTTGCAT
1 CCATAATGAACTCGAAACGCAACTCAACGAGCTCAGATGCTTACAT
* *
60220386 CCATAAGTGAACTCGAAACGCAACTCAACGAGTTCGGATGC
1 CCATAA-TGAACTCGAAACGCAACTCAACGAGCTCAGATGC
60220427 CTCATAATTC
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
46 41 0.55
47 33 0.45
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (46 bp):
CCATAATGAACTCGAAACGCAACTCAACGAGCTCAGATGCTTACAT
Found at i:60220411 original size:47 final size:47
Alignment explanation
Indices: 60220294--60220467 Score: 165
Period size: 47 Copynumber: 3.7 Consensus size: 47
60220284 ATAATTTCAC
* * * *
60220294 CCATAATGAACTCGGAATGCAACTCAACGAGCTCAGGTG-TTCACAT
1 CCATAATGAACTCGAAACGCAACTCAACGAGTTCAGATGCTTCACAT
* * * *
60220340 CCATAATGAACTCGAAACACAACTCAACAAGTTCCGATGCTT-GCAT
1 CCATAATGAACTCGAAACGCAACTCAACGAGTTCAGATGCTTCACAT
* * *
60220386 CCATAAGTGAACTCGAAACGCAACTCAACGAGTTCGGATGCCTCATAAT
1 CCATAA-TGAACTCGAAACGCAACTCAACGAGTTCAGATGCTTCA-CAT
* * * **
60220435 TC-TCACGAACTCGAAACATAACTCAACGAGTTC
1 CCATAATGAACTCGAAACGCAACTCAACGAGTTC
60220468 GGATCTCAAT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
46 41 0.39
47 59 0.56
48 2 0.02
49 3 0.03
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (47 bp):
CCATAATGAACTCGAAACGCAACTCAACGAGTTCAGATGCTTCACAT
Found at i:60221366 original size:29 final size:29
Alignment explanation
Indices: 60221333--60221390 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
60221323 ACCCTAGCTA
60221333 TGGTAGCAAGTAAAATTTGGCAACAACAT
1 TGGTAGCAAGTAAAATTTGGCAACAACAT
60221362 TGGTAGCAAGTAAAATTTGGCAACAACAT
1 TGGTAGCAAGTAAAATTTGGCAACAACAT
60221391 GAAGAAGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (29 bp):
TGGTAGCAAGTAAAATTTGGCAACAACAT
Found at i:60226175 original size:14 final size:14
Alignment explanation
Indices: 60226152--60226181 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
60226142 ATCATCAACA
60226152 TTTACCCTGAATTC
1 TTTACCCTGAATTC
*
60226166 TTTACTCTGAATTC
1 TTTACCCTGAATTC
60226180 TT
1 TT
60226182 CAGCCCCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.23, G:0.07, T:0.50
Consensus pattern (14 bp):
TTTACCCTGAATTC
Found at i:60236504 original size:19 final size:19
Alignment explanation
Indices: 60236482--60236520 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
60236472 TTCAAACATC
60236482 TCACAAAAGATCATAAGCA
1 TCACAAAAGATCATAAGCA
60236501 TCACAAAAGATCATAAGCA
1 TCACAAAAGATCATAAGCA
60236520 T
1 T
60236521 ATAGATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.21, G:0.10, T:0.18
Consensus pattern (19 bp):
TCACAAAAGATCATAAGCA
Found at i:60238723 original size:26 final size:28
Alignment explanation
Indices: 60238666--60238731 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
60238656 CTGCCGTCCA
*
60238666 TTTTTCCTTTTCTTCTCATGTCTGTTTTT
1 TTTTTCCTTTTCTTCT-ATGTCTGTTTAT
60238695 TTTTTCCTTTTCTTCT-TG-CT-TTCTAT
1 TTTTTCCTTTTCTTCTATGTCTGTT-TAT
60238721 TTTTT-CTTTTC
1 TTTTTCCTTTTC
60238732 ATTTTTGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 8 0.23
26 9 0.26
27 2 0.06
29 16 0.46
ACGTcount: A:0.03, C:0.21, G:0.05, T:0.71
Consensus pattern (28 bp):
TTTTTCCTTTTCTTCTATGTCTGTTTAT
Found at i:60240563 original size:10 final size:10
Alignment explanation
Indices: 60240550--60240581 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
60240540 TTTTTAGAAT
60240550 AATAACATAA
1 AATAACATAA
60240560 AATAACATAA
1 AATAACATAA
60240570 AATAA-ATAA
1 AATAACATAA
60240579 AAT
1 AAT
60240582 TCAGGAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 7 0.32
10 15 0.68
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (10 bp):
AATAACATAA
Found at i:60243896 original size:47 final size:47
Alignment explanation
Indices: 60243842--60244118 Score: 383
Period size: 47 Copynumber: 5.8 Consensus size: 47
60243832 TTTAAGATTT
60243842 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
60243889 GATGTGATGAATGTGAAAGTGTATATATATATGTGATAAAGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCC
60243940 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* * *
60243989 GATGTGATGAATGTGAAGGTGTATATATGTGACAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * * *
60244036 AATGTGATGAATGTGAAAGTGTATATATATGATAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
60244083 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
60244119 TCCCGAAGGG
Statistics
Matches: 210, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 117 0.56
49 47 0.22
51 46 0.22
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:60243993 original size:147 final size:141
Alignment explanation
Indices: 60243842--60244118 Score: 401
Period size: 147 Copynumber: 1.9 Consensus size: 141
60243832 TTTAAGATTT
* * *
60243842 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
60243907 GTGTATATATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
66 GTG--TATATATA--TGATAAAGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGT
60243972 GATAAGGCCTAATGGCC
125 GATAAGGCCTAATGGCC
*
60243989 GATGTGATGAATGTGAAGGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAA
** * *
60244054 GTGTATATATATGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGTATATATATGATAAAGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
60244119 TCCCGAAGGG
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
141 10 0.08
142 1 0.01
143 36 0.30
145 8 0.07
147 64 0.54
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAA
GTGTATATATATGATAAAGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
GCCTAATGGCC
Found at i:60246119 original size:20 final size:21
Alignment explanation
Indices: 60246094--60246136 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
60246084 CACATTAGTG
60246094 AACAAATATAAATAT-AAATA
1 AACAAATATAAATATAAAATA
**
60246114 AACAAATATTTATATAAAATA
1 AACAAATATAAATATAAAATA
60246135 AA
1 AA
60246137 ATAAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (21 bp):
AACAAATATAAATATAAAATA
Found at i:60246149 original size:22 final size:20
Alignment explanation
Indices: 60246105--60246150 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
60246095 ACAAATATAA
*
60246105 ATATAAATAAACAAATATTT
1 ATATAAATAAACAAAAATTT
*
60246125 ATATAAAATAAAATAAAAATTT
1 ATAT-AAAT-AAACAAAAATTT
60246147 ATAT
1 ATAT
60246151 TTAAAATATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 4 0.18
22 14 0.64
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATAAATAAACAAAAATTT
Found at i:60249673 original size:161 final size:157
Alignment explanation
Indices: 60249352--60249835 Score: 614
Period size: 161 Copynumber: 3.1 Consensus size: 157
60249342 TTAAATCCTA
* * *
60249352 AAACATAATTATTTAATTAAATCTTATTTGGAAACAAAATCAAAATAAAATTTGTTAAATGGCAG
1 AAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAATCAAAATAAAATTTGTT-AA--GCAG
* * *
60249417 -GAATAAATCCCGAAACAAAATTATTTGATTAAA---TCTTATTTGGAAACAAAGTCAAAAT---
63 CGAATAAATCCC-AAA-AAAATTATTTAATTAAATCTTCTTGTTTGGAAA-AAAATCAAAATCGA
* *
60249475 A-AAAA-TTGTTAAACGGCGGGAATAAATCTCA
125 ATAAAATTTGTTAAACGGCAGGAATAAATCTCG
* * *
60249506 AAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAAACGAAATAAAATATGTTAAGCAGCTG
1 AAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAATCAAAATAAAATTTGTTAAGCAGC-G
*
60249571 AATAAATCCCAAAATAGAATTATTCAATTAAATCTTCTTGTTTGGAAATAAAATCAAAATCGAAT
65 AATAAATCCCAAAA-A-AATTATTTAATTAAATCTTCTTGTTTGGAAA-AAAATCAAAATCGAAT
60249636 AAAATTTGTTAAACGGCAGGAATAAATCTCG
127 AAAATTTGTTAAACGGCAGGAATAAATCTCG
* *
60249667 AAACAGAATTATTTGATTCAATCTTGTTTGGAAACAAAATCAAAATAAAATTTGTTAAGCATCGG
1 AAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAATCAAAATAAAATTTGTTAAGCAGC-G
*
60249732 AATAAATCCCGAAAAAAATTATTTAATTAAATCTTCTCGTTTGG-AAAAAATCAAAATCGAATAA
65 AATAAATCCC-AAAAAAATTATTTAATTAAATCTTCTTGTTTGGAAAAAAATCAAAATCGAATAA
* *
60249796 AATCTT-CTAAATGGCAGGAATAAATCTCG
129 AAT-TTGTTAAACGGCAGGAATAAATCTCG
60249825 AAACA-AATTAT
1 AAACAGAATTAT
60249836 ATTCAATTTT
Statistics
Matches: 293, Mismatches: 23, Indels: 25
0.86 0.07 0.07
Matches are distributed among these distances:
151 5 0.02
152 4 0.01
153 26 0.09
154 50 0.17
156 22 0.08
157 6 0.02
158 47 0.16
159 5 0.02
160 30 0.10
161 94 0.32
162 4 0.01
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (157 bp):
AAACAGAATTATTTGATTAAATCTTGTTTGGAAACAAAATCAAAATAAAATTTGTTAAGCAGCGA
ATAAATCCCAAAAAAATTATTTAATTAAATCTTCTTGTTTGGAAAAAAATCAAAATCGAATAAAA
TTTGTTAAACGGCAGGAATAAATCTCG
Found at i:60249782 original size:76 final size:77
Alignment explanation
Indices: 60249306--60249869 Score: 467
Period size: 77 Copynumber: 7.1 Consensus size: 77
60249296 TAAATTTCTA
* * * * * * ** *
60249306 AAACAAAATTAAAAT-TAATTCTGTTGAATAGTAGGATTAAATCCTAAAACATAATTATTTAATT
1 AAACAAAATCAAAATAAAATT-TGTTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTAATT
*
60249370 AAATCTTATTTGG
65 AAATCTTGTTTGG
** *
60249383 AAACAAAATCAAAATAAAATTTGTTAAATGGCAGGAATAAATCCCGAAACAAAATTATTTGATTA
1 AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTAATTA
*
60249448 AATCTTATTTGG
66 AATCTTGTTTGG
* * * * * * * *
60249460 AAACAAAGTCAAAATAAAAATTGTTAAACGGCGGGAATAAATCTCAAAACAGAATTATTTGATTA
1 AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTAATTA
60249525 AATCTTGTTTGG
66 AATCTTGTTTGG
* * * * * * * * *
60249537 AAACAAAAACGAAATAAAATATGTTAAGCAGC-TGAATAAATCCCAAAATAGAATTATTCAATTA
1 AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTAATTA
60249601 AATCTTCTTGTTTGG
66 AA---TCTTGTTTGG
* * * *
60249616 AAATAAAATCAAAATCGAATAAAATTTGTTAAACGGCAGGAATAAATCTCGAAACAGAATTATTT
1 AAACAAAATC--AA---AATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAACAAAATTATTT
* *
60249681 GATTCAATCTTGTTTGG
61 AATTAAATCTTGTTTGG
* *
60249698 AAACAAAATCAAAATAAAATTTGTTAAGCATC-GGAATAAATCCCGAAA-AAAATTATTTAATTA
1 AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTAATTA
60249761 AATCTTCTCGTTTGG
66 AATC-T-T-GTTTGG
* * ** *
60249776 AAAAAATCAAAATC-GAATAAAATCTT-CTAAATGGCAGGAATAAATCTCGAAAC-AAATTATAT
1 ---AAA-CAAAATCAAAATAAAAT-TTGTTAAACAGCAGGAATAAATCCCGAAACAAAATTAT-T
* **
60249838 TCAATTTTAATCCTCATTTGG
60 T-AA-TTAAAT-CTTGTTTGG
60249859 AAACAAAATCA
1 AAACAAAATCA
60249870 TAATGGAATA
Statistics
Matches: 401, Mismatches: 61, Indels: 47
0.79 0.12 0.09
Matches are distributed among these distances:
75 16 0.04
76 45 0.11
77 174 0.43
78 10 0.02
79 25 0.06
80 5 0.01
81 16 0.04
82 50 0.12
83 7 0.02
84 19 0.05
85 33 0.08
86 1 0.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (77 bp):
AAACAAAATCAAAATAAAATTTGTTAAACAGCAGGAATAAATCCCGAAACAAAATTATTTAATTA
AATCTTGTTTGG
Found at i:60250799 original size:26 final size:26
Alignment explanation
Indices: 60250770--60250877 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
60250760 TGGTACAAAT
60250770 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
60250796 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
60250822 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
60250848 GGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
60250874 TGAT
1 TGAT
60250878 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:60257099 original size:37 final size:37
Alignment explanation
Indices: 60257046--60257136 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
60257036 TTATTACGAA
60257046 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
60257083 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
60257120 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
60257137 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:60257285 original size:49 final size:49
Alignment explanation
Indices: 60257232--60257589 Score: 555
Period size: 49 Copynumber: 7.4 Consensus size: 49
60257222 TTTTACATTA
*
60257232 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
60257281 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
60257330 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACACCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
60257379 GCCATTAGGCCTTATCCCATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
60257428 GCCATTAGGCCTTATCGCATATACATACACTTCCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
60257477 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
60257524 GCCA-TACGGCCTTATCACACAT--ATGCACTTTCACATTCATCACATTG
1 GCCATTA-GGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
60257571 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
60257590 CATATATGTA
Statistics
Matches: 294, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 2 0.01
47 81 0.28
48 1 0.00
49 210 0.71
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:60262192 original size:26 final size:26
Alignment explanation
Indices: 60262163--60262270 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
60262153 TGGTACAAAT
60262163 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
60262189 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
60262215 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
60262241 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
60262267 TGAT
1 TGAT
60262271 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:60264248 original size:27 final size:27
Alignment explanation
Indices: 60264230--60264298 Score: 129
Period size: 27 Copynumber: 2.6 Consensus size: 27
60264220 ATAGTGAGTC
60264230 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
60264257 CGCACACTTAGTGTTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
60264284 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60264299 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:60270142 original size:46 final size:46
Alignment explanation
Indices: 60270092--60270267 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
60270082 TGGTTGAGCA
60270092 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60270138 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
60270183 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60270231 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60270268 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60270248 original size:93 final size:93
Alignment explanation
Indices: 60270089--60270260 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
60270079 GGATGGTTGA
* * *
60270089 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60270154 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60270182 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60270247 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60270261 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60272408 original size:70 final size:70
Alignment explanation
Indices: 60272293--60272436 Score: 270
Period size: 70 Copynumber: 2.1 Consensus size: 70
60272283 TTTAATTAAA
*
60272293 AATACATGGGAGGAAAGTGGTTAACTATGTGTTAATTAACGAGATAATTTCTATATAAATCAATG
1 AATACATGGGAGGAAAGTGGTTAACTATGTGTTAATTAACCAGATAATTTCTATATAAATCAATG
60272358 GTTCT
66 GTTCT
*
60272363 AATACATGGGAGGAAAGTGGTTAATTATGTGTTAATTAACCAGATAATTTCTATATAAATCAATG
1 AATACATGGGAGGAAAGTGGTTAACTATGTGTTAATTAACCAGATAATTTCTATATAAATCAATG
60272428 GTTCT
66 GTTCT
60272433 AATA
1 AATA
60272437 ACCCTTTTCA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (70 bp):
AATACATGGGAGGAAAGTGGTTAACTATGTGTTAATTAACCAGATAATTTCTATATAAATCAATG
GTTCT
Found at i:60273099 original size:29 final size:29
Alignment explanation
Indices: 60273057--60273115 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
60273047 TTTTTTTAAA
60273057 CTCAAATGAAACTACAGATCTAAATATAC
1 CTCAAATGAAACTACAGATCTAAATATAC
60273086 CTCAAATGAAACTACAGATCTAAATATAC
1 CTCAAATGAAACTACAGATCTAAATATAC
60273115 C
1 C
60273116 AAATTCGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.22, G:0.07, T:0.24
Consensus pattern (29 bp):
CTCAAATGAAACTACAGATCTAAATATAC
Found at i:60273455 original size:43 final size:43
Alignment explanation
Indices: 60273407--60273503 Score: 158
Period size: 43 Copynumber: 2.3 Consensus size: 43
60273397 TTAAAAAAAT
* *
60273407 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAACGGCGCTTTTCTCACAAAC
*
60273450 GCCGCTAAAAACCATGACCTTTAACGGCGCTTTTCTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAACGGCGCTTTTCTCACAAAC
*
60273493 GCCTCTAAAGA
1 GCCGCTAAAGA
60273504 ATATAACCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAACGGCGCTTTTCTCACAAAC
Found at i:60273513 original size:43 final size:43
Alignment explanation
Indices: 60273407--60273516 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 43
60273397 TTAAAAAAAT
* * * *
60273407 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
1 GCCGCTAAAAACCATAACCTTTAACGGCGCTTTTCTCACAAAC
*
60273450 GCCGCTAAAAACCATGACCTTTAACGGCGCTTTTCTCACAAAC
1 GCCGCTAAAAACCATAACCTTTAACGGCGCTTTTCTCACAAAC
* *
60273493 GCCTCTAAAGAA-TATAACCTTTAA
1 GCCGCTAAA-AACCATAACCTTTAA
60273517 AAAAATATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 58 0.97
44 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAAACCATAACCTTTAACGGCGCTTTTCTCACAAAC
Found at i:60274155 original size:24 final size:24
Alignment explanation
Indices: 60274127--60274173 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
60274117 CTTCAACACC
60274127 TGCCTCTTCCTATGTTTCCCTTAT
1 TGCCTCTTCCTATGTTTCCCTTAT
*
60274151 TGCCTCTTCCTATGTTTCTCTTA
1 TGCCTCTTCCTATGTTTCCCTTA
60274174 CTAAGTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.09, C:0.32, G:0.09, T:0.51
Consensus pattern (24 bp):
TGCCTCTTCCTATGTTTCCCTTAT
Found at i:60277510 original size:20 final size:19
Alignment explanation
Indices: 60277472--60277512 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
60277462 TTTCCAACAG
* *
60277472 TAAACCCTAAACCTAAACC
1 TAAACCCCAAACATAAACC
60277491 TAAACCCCAAACTATAAACC
1 TAAACCCCAAAC-ATAAACC
60277511 TA
1 TA
60277513 TATCCTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (19 bp):
TAAACCCCAAACATAAACC
Found at i:60277720 original size:14 final size:14
Alignment explanation
Indices: 60277703--60277734 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
60277693 AAAAAAACAC
*
60277703 AAACTCTAAACCAT
1 AAACTCTAAACCAA
60277717 AAACTCTAAACCAA
1 AAACTCTAAACCAA
60277731 AAAC
1 AAAC
60277735 AATAAACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (14 bp):
AAACTCTAAACCAA
Found at i:60278498 original size:41 final size:41
Alignment explanation
Indices: 60278448--60278594 Score: 195
Period size: 41 Copynumber: 3.6 Consensus size: 41
60278438 TTTTTCCAAA
* * *
60278448 AGCGATTTTCTAAAAGCGCCGCTAAAACCTCGATCTATAGC
1 AGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGC
*
60278489 AGCGTTTTTCCAAAAACGCCGCTAAAACCTCGACCTATAGC
1 AGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGC
* * * * *
60278530 GGCGCTTTTCCAAAAGCGTCTCTAAAACCTTGACCTATAGC
1 AGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGC
* *
60278571 GGCGTTTTTCCAAAAGCGTCGCTA
1 AGCGTTTTTCCAAAAGCGCCGCTA
60278595 TTGTTCAGTT
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (41 bp):
AGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATAGC
Found at i:60278625 original size:41 final size:41
Alignment explanation
Indices: 60278567--60278699 Score: 160
Period size: 41 Copynumber: 3.3 Consensus size: 41
60278557 CCTTGACCTA
** * * *
60278567 TAGCGGCGTTT-TTCCAAAAGCGTCGCTATTGTTCAGTTTT
1 TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTT
60278607 TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTT
1 TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTT
* ** *
60278648 TAGTGGCGTTTGGATAAAAAATGCCGCTATTGCTCAGTTTT
1 TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTT
* *
60278689 TTGTGGCGTTT
1 TAGCGGCGTTT
60278700 TATTGCAAAC
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 11 0.13
41 71 0.87
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.37
Consensus pattern (41 bp):
TAGCGGCGTTTGGACCAAAAACGCCGCTATTGCTCAGTTTT
Found at i:60280524 original size:40 final size:40
Alignment explanation
Indices: 60280447--60280705 Score: 273
Period size: 40 Copynumber: 6.5 Consensus size: 40
60280437 GAATCACGTA
* **
60280447 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGG-ATCTTAACCCGGATTTAG-TAACTCGCACAAATG
* * *
60280486 CCTTCGGGA-CATAGCCCGG-TTATAATAACTCGCACAAATG
1 CCTTC-GGATCTTAACCCGGATT-TAGTAACTCGCACAAATG
60280526 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTC-GGATCTTAACCCGGATTTAGTAACTCGCACAAATG
**
60280566 CCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATG
*
60280606 CCTTCGGATCTTAATCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATG
* * * *
60280646 CCTTCGGATCTTAATCCGGATATAGTCACTTAGCACAAA-G
1 CCTTCGGATCTTAACCCGGATTTAGTAAC-TCGCACAAATG
*
60280686 CCTTCGGGA-CTTAGCCCGGA
1 CCTTC-GGATCTTAACCCGGA
60280706 CATCATTCGA
Statistics
Matches: 194, Mismatches: 17, Indels: 17
0.85 0.07 0.07
Matches are distributed among these distances:
39 13 0.07
40 168 0.87
41 13 0.07
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:60280595 original size:80 final size:80
Alignment explanation
Indices: 60280480--60280705 Score: 307
Period size: 80 Copynumber: 2.8 Consensus size: 80
60280470 GCTACTCGTT
* * *
60280480 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAATAACTCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
60280543 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
*
60280560 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAATCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
60280624 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* * * * *
60280640 CAAATGCCTTCGGATCTTAATCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
60280704 GA
65 GA
60280706 CATCATTCGA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
79 6 0.05
80 112 0.85
81 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Done.