Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 195 of 438
Found at i:60559742 original size:20 final size:20
Alignment explanation
Indices: 60559705--60559750 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
60559695 TAGGGACAAA
* *
60559705 AATGAAAAGTTGTAAAATTT
1 AATGAAAACTTCTAAAATTT
*
60559725 AATGAAAACTTCTGAAATTT
1 AATGAAAACTTCTAAAATTT
*
60559745 TATGAA
1 AATGAA
60559751 TACATGTGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.04, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGAAAACTTCTAAAATTT
Found at i:60563212 original size:12 final size:13
Alignment explanation
Indices: 60563176--60563213 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
60563166 AAATATTTGA
60563176 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
60563189 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
60563203 CTTG-TCTTAAT
1 CTTGTTCTTAAT
60563214 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:60568986 original size:7 final size:8
Alignment explanation
Indices: 60568969--60568993 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
60568959 GTTTAAAGAC
60568969 TTTTTATT
1 TTTTTATT
60568977 TTTTTATT
1 TTTTTATT
60568985 TTTTTATT
1 TTTTTATT
60568993 T
1 T
60568994 CCACTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTATT
Found at i:60572589 original size:28 final size:28
Alignment explanation
Indices: 60572557--60572625 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
60572547 GCGTAGATCA
60572557 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60572585 CGAAATTACCCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60572613 CGATA-TACCCCTA
1 CGAAATTACCCCTA
60572626 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.42, C:0.28, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:60572975 original size:141 final size:141
Alignment explanation
Indices: 60572802--60573083 Score: 564
Period size: 141 Copynumber: 2.0 Consensus size: 141
60572792 TTGCTGCAAC
60572802 TGTGGTGTGTAGGGCTGGGTGGGTTGAGATATTCCCCACATGGTGTGTAGGGTTGGTACGGGGCA
1 TGTGGTGTGTAGGGCTGGGTGGGTTGAGATATTCCCCACATGGTGTGTAGGGTTGGTACGGGGCA
60572867 GTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAGATGGGCTTGCATTCATTATTACTGTTGATAC
66 GTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAGATGGGCTTGCATTCATTATTACTGTTGATAC
60572932 TCATGTTACTG
131 TCATGTTACTG
60572943 TGTGGTGTGTAGGGCTGGGTGGGTTGAGATATTCCCCACATGGTGTGTAGGGTTGGTACGGGGCA
1 TGTGGTGTGTAGGGCTGGGTGGGTTGAGATATTCCCCACATGGTGTGTAGGGTTGGTACGGGGCA
60573008 GTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAGATGGGCTTGCATTCATTATTACTGTTGATAC
66 GTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAGATGGGCTTGCATTCATTATTACTGTTGATAC
60573073 TCATGTTACTG
131 TCATGTTACTG
60573084 AACTGGGCCT
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.16, C:0.15, G:0.36, T:0.33
Consensus pattern (141 bp):
TGTGGTGTGTAGGGCTGGGTGGGTTGAGATATTCCCCACATGGTGTGTAGGGTTGGTACGGGGCA
GTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAGATGGGCTTGCATTCATTATTACTGTTGATAC
TCATGTTACTG
Found at i:60576485 original size:19 final size:18
Alignment explanation
Indices: 60576449--60576495 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
60576439 TAGGCTATTC
60576449 TGGGCCTCGT-TGGGCTAAA
1 TGGG-CTCGTGTGGGCT-AA
60576468 TGGG-TCGTGTGGGTCTAA
1 TGGGCTCGTGTGGG-CTAA
60576486 TGGGCTCGTG
1 TGGGCTCGTG
60576496 GGCCCCACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.16
18 10 0.40
19 11 0.44
ACGTcount: A:0.11, C:0.17, G:0.43, T:0.30
Consensus pattern (18 bp):
TGGGCTCGTGTGGGCTAA
Found at i:60576749 original size:27 final size:27
Alignment explanation
Indices: 60576713--60576764 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
60576703 TTAAGACCCT
*
60576713 GATTTTTAAAATTACCAAAATACCCAC
1 GATTTGTAAAATTACCAAAATACCCAC
60576740 GATTTGTAAAATTACCAAAATACCC
1 GATTTGTAAAATTACCAAAATACCC
60576765 TTGTTGTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (27 bp):
GATTTGTAAAATTACCAAAATACCCAC
Found at i:60578194 original size:93 final size:93
Alignment explanation
Indices: 60578082--60578253 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60578072 GCCCATAAGT
* *
60578082 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60578147 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
60578175 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60578240 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
60578254 CAAATCCAGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60578249 original size:46 final size:46
Alignment explanation
Indices: 60578074--60578249 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
60578064 TGTAACCCGC
* * *
60578074 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
60578120 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
60578170 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
60578213 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60578250 TGCCCAAATC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:60580675 original size:30 final size:30
Alignment explanation
Indices: 60580631--60580719 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
60580621 CAAAGATAAC
60580631 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
60580660 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
60580690 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
60580720 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:60580679 original size:15 final size:15
Alignment explanation
Indices: 60580631--60580710 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
60580621 CAAAGATAAC
*
60580631 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
60580645 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
60580660 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
60580675 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
60580690 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
60580705 AAGAAA
1 AAGAAA
60580711 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:60580719 original size:15 final size:15
Alignment explanation
Indices: 60580642--60580719 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
60580632 AGAAAACCGA
60580642 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
60580657 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
60580671 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
60580686 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
60580702 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
60580717 ATA
1 ATA
60580720 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:60583775 original size:93 final size:93
Alignment explanation
Indices: 60583663--60583834 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60583653 GCCCATAAGT
* *
60583663 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60583728 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
60583756 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60583821 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
60583835 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60583830 original size:46 final size:46
Alignment explanation
Indices: 60583655--60583830 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
60583645 TGTAACCCGC
* * *
60583655 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
60583701 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
60583751 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
60583794 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60583831 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:60586557 original size:16 final size:17
Alignment explanation
Indices: 60586525--60586557 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
60586515 AAATAAGAAG
60586525 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
60586543 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
60586558 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:60590566 original size:46 final size:44
Alignment explanation
Indices: 60590515--60590631 Score: 146
Period size: 44 Copynumber: 2.6 Consensus size: 44
60590505 AGGGCTAGTC
*
60590515 TAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCGTCAGCCACGAG-AT--GAGCCAGTG
* * * *
60590561 TAAGACATGTCTGGGACATGCGTCGGCTACGAGATGTGCTAGTG
1 TAAGACATGTCTGGGACATGCGTCAGCCACGAGATGAGCCAGTG
*
60590605 TAAGACATGTATGGGACATGCGTCAGC
1 TAAGACATGTCTGGGACATGCGTCAGC
60590632 ACGGTTACAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
44 32 0.51
46 29 0.46
47 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCGTCAGCCACGAGATGAGCCAGTG
Found at i:60590620 original size:44 final size:45
Alignment explanation
Indices: 60590508--60590631 Score: 153
Period size: 46 Copynumber: 2.8 Consensus size: 45
60590498 TGAGACGAGG
* *
60590508 GCTAGTCTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCACAGTAT-AGA
* * * *
60590554 GCCAGTGTAAGACATGTCTGGGACATGCGTCGGCTACGAG-AT-GT
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCAC-AGTATAGA
*
60590598 GCTAGTGTAAGACATGTATGGGACATGCGTCAGC
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGC
60590632 ACGGTTACAT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 32 0.47
46 34 0.50
47 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCACAGTATAGA
Found at i:60590666 original size:46 final size:43
Alignment explanation
Indices: 60590556--60590668 Score: 129
Period size: 44 Copynumber: 2.5 Consensus size: 43
60590546 GTATGAGAGC
* * *
60590556 CAGTGTAAGACATGTCTGGGACATGCGTCGGCTACGAGATGTG
1 CAGTGTAAGACATGTATGGGACATGCGTCAGCTACGACATGTG
60590599 CTAGTGTAAGACATGTATGGGACATGCGTCAGC-ACGGTTACATGTG
1 C-AGTGTAAGACATGTATGGGACATGCGTCAGCTAC-G--ACATGTG
* *
60590645 TCAGTGTAAGACCTGTTTGGGACA
1 -CAGTGTAAGACATGTATGGGACA
60590669 CGGCATCGAC
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
43 3 0.05
44 30 0.50
46 26 0.43
47 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.26
Consensus pattern (43 bp):
CAGTGTAAGACATGTATGGGACATGCGTCAGCTACGACATGTG
Found at i:60592919 original size:39 final size:40
Alignment explanation
Indices: 60592861--60592961 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
60592851 AAATTGAATG
* *
60592861 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
60592900 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
60592940 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
60592962 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:60592954 original size:40 final size:40
Alignment explanation
Indices: 60592861--60593043 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
60592851 AAATTGAATG
* * * * *
60592861 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
60592900 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
60592940 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * * *
60592980 AAATCTGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
60593020 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
60593044 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 32 0.27
40 85 0.71
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:60598822 original size:29 final size:27
Alignment explanation
Indices: 60598788--60598890 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
60598778 TACTCAATCA
*
60598788 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
60598817 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
60598846 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
60598875 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
60598891 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:60606612 original size:29 final size:27
Alignment explanation
Indices: 60606580--60606682 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
60606570 TACTCAATCA
*
60606580 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
60606609 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
60606638 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
60606667 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
60606683 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:60612023 original size:31 final size:31
Alignment explanation
Indices: 60611988--60612051 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
60611978 CCTTTTCATG
60611988 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
60612019 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
60612050 TT
1 TT
60612052 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:60612294 original size:24 final size:24
Alignment explanation
Indices: 60612243--60612409 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
60612233 GCTTTATCAT
* *
60612243 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
60612268 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
60612292 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
60612315 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60612339 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60612363 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60612387 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60612410 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:60612346 original size:71 final size:71
Alignment explanation
Indices: 60612242--60612409 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
60612232 TGCTTTATCA
*
60612242 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
60612306 AGCCCTTT
64 AGCCCTTT
* * **
60612314 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
60612379 CCCTTT
66 CCCTTT
60612385 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
60612410 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:60612488 original size:20 final size:20
Alignment explanation
Indices: 60612459--60612519 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
60612449 TTATGATTAC
*
60612459 ATCATTTGCATATCATACAT
1 ATCATGTGCATATCATACAT
60612479 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
60612499 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
60612519 A
1 A
60612520 CCATATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:60617059 original size:2 final size:2
Alignment explanation
Indices: 60617052--60617077 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60617042 CGGCTCTAGC
60617052 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60617078 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60617866 original size:40 final size:40
Alignment explanation
Indices: 60617783--60617935 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
60617773 TCGAATGATG
* *
60617783 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
60617823 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
60617863 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
60617904 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
60617936 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:60624708 original size:40 final size:40
Alignment explanation
Indices: 60624580--60624731 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
60624570 ATAACCACGT
* * *
60624580 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
60624620 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
60624660 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * * *
60624700 GCATAATTGTCTTTGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
60624732 CATTCAATTT
Statistics
Matches: 90, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 86 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:60624722 original size:80 final size:80
Alignment explanation
Indices: 60624580--60624729 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
60624570 ATAACCACGT
* *
60624580 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
60624645 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * * *
60624660 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTTGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
60624723 CCCGGAT
64 CCCGGAT
60624730 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:60629087 original size:40 final size:40
Alignment explanation
Indices: 60629004--60629156 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
60628994 TCAAATGATG
* *
60629004 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
60629044 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* * **
60629084 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGCT-ATTACAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
60629125 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
60629157 CGCTATATCC
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
39 2 0.02
40 79 0.86
41 11 0.12
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:60636793 original size:49 final size:49
Alignment explanation
Indices: 60636733--60636855 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
60636723 GTCAATGATG
* *
60636733 TGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAG-G-CTGATACCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGTC-GATACCA
* ** * *
60636782 TGTCCCAGACAGGTCTTACATTGGGTCTCATCTATCGGTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTCGATACCA
*
60636831 TGTCCCAAACAGGTCTTACACTGAC
1 TGTCCCAGACAGGTCTTACACTGAC
60636856 ACACAACAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
48 1 0.02
49 59 0.97
50 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTCGATACCA
Found at i:60647029 original size:49 final size:49
Alignment explanation
Indices: 60646969--60647353 Score: 702
Period size: 49 Copynumber: 7.9 Consensus size: 49
60646959 GTATGAGATA
*
60646969 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60647018 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60647067 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60647116 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60647165 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60647214 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60647263 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60647310 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
60647354 TATATGTGTG
Statistics
Matches: 327, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
47 45 0.14
49 282 0.86
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:60647494 original size:37 final size:37
Alignment explanation
Indices: 60647448--60647530 Score: 157
Period size: 37 Copynumber: 2.2 Consensus size: 37
60647438 AATATGTTCT
*
60647448 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
60647485 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
60647522 GGGTAAGAC
1 GGGTAAGAC
60647531 TTCGTAATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:60649410 original size:40 final size:40
Alignment explanation
Indices: 60649353--60649504 Score: 259
Period size: 40 Copynumber: 3.8 Consensus size: 40
60649343 GAGAATTGAG
* *
60649353 AGTGATATATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
60649393 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
60649433 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
60649473 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
60649505 ATCATGCTGG
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:60653377 original size:35 final size:36
Alignment explanation
Indices: 60653325--60653438 Score: 176
Period size: 35 Copynumber: 3.1 Consensus size: 36
60653315 AATGTGAAAG
60653325 TGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGTGTATATA-GTGATAAGGCCTAATGGCCGATGTGA
60653362 TGTGTATATA-TGATAAGGCCTAATGGCCGATGTGA
1 TGTGTATATAGTGATAAGGCCTAATGGCCGATGTGA
60653397 TGTGAAATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGTG---TATATA-GTGATAAGGCCTAATGGCCGATGTGA
60653437 TG
1 TG
60653439 AATGAGAAAG
Statistics
Matches: 72, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
35 29 0.40
37 10 0.14
38 6 0.08
40 27 0.38
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.32
Consensus pattern (36 bp):
TGTGTATATAGTGATAAGGCCTAATGGCCGATGTGA
Found at i:60653459 original size:49 final size:49
Alignment explanation
Indices: 60653403--60653641 Score: 437
Period size: 49 Copynumber: 4.9 Consensus size: 49
60653393 GTGATGTGAA
*
60653403 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
60653452 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
60653501 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
60653550 ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
60653598 -TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
60653642 TATATGTGTG
Statistics
Matches: 185, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 43 0.23
49 142 0.77
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:60653656 original size:98 final size:97
Alignment explanation
Indices: 60653356--60653657 Score: 426
Period size: 98 Copynumber: 3.2 Consensus size: 97
60653346 CTAATGGCCG
* *
60653356 ATGTGATGTGTATATATGATAAGGCCTAATGGCCGA--TG-TG-ATGTGAAA---TATATATGTG
1 ATGT-ATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
60653414 ATAAGGCCTAATGGCCGATGTGATGAATGAGAA
65 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
60653447 A-GTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 ATGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
60653511 GATAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 GATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
60653545 AGTGTA--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTG
1 A-TGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
60653608 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
60653641 ATATATGTGTGATATGT
1 ATGTATGTAT-ATATGT
60653658 ATATGTGGTA
Statistics
Matches: 189, Mismatches: 8, Indels: 21
0.87 0.04 0.10
Matches are distributed among these distances:
89 28 0.15
90 2 0.01
91 3 0.02
92 2 0.01
93 8 0.04
95 3 0.02
96 44 0.23
97 2 0.01
98 95 0.50
100 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.31
Consensus pattern (97 bp):
ATGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:60653782 original size:37 final size:37
Alignment explanation
Indices: 60653736--60653818 Score: 157
Period size: 37 Copynumber: 2.2 Consensus size: 37
60653726 AATATGTTCT
*
60653736 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
60653773 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
60653810 GGGTAAGAC
1 GGGTAAGAC
60653819 TTCGTAATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:60655700 original size:40 final size:40
Alignment explanation
Indices: 60655643--60655794 Score: 259
Period size: 40 Copynumber: 3.8 Consensus size: 40
60655633 GAGAATTGAG
* *
60655643 AGTGATATATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
60655683 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
60655723 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
60655763 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
60655795 ATCATGCTGG
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:60659630 original size:49 final size:49
Alignment explanation
Indices: 60659570--60659906 Score: 631
Period size: 49 Copynumber: 6.9 Consensus size: 49
60659560 GTATGAGATA
*
60659570 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60659619 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA-GTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60659667 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60659716 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60659765 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60659814 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60659863 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
60659907 TATATGTGTG
Statistics
Matches: 283, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
48 48 0.17
49 235 0.83
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:60660047 original size:37 final size:37
Alignment explanation
Indices: 60660001--60660083 Score: 157
Period size: 37 Copynumber: 2.2 Consensus size: 37
60659991 AATATGTTCT
*
60660001 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
60660038 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
60660075 GGGTAAGAC
1 GGGTAAGAC
60660084 TTCGTAATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:60667360 original size:48 final size:46
Alignment explanation
Indices: 60667294--60667416 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 46
60667284 AAGCTGACGA
* *
60667294 CATGTCCCAGATAGGTCTTACACTAGCT-T-GTATATCCAGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCG--TAT-CA-AGGCCGATG
* * * *
60667342 CATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAAGGCCGATG
*
60667388 CATGTCCCAGACATGTCTTACACTGGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
60667417 ACATACCACC
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 34 0.52
47 2 0.03
48 27 0.42
49 1 0.02
50 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAAGGCCGATG
Found at i:60670000 original size:27 final size:26
Alignment explanation
Indices: 60669970--60670031 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
60669960 ATTTACTAGA
* *
60669970 ATACCCCTAAGTATAAAAATTACCATT
1 ATACCCCTAAGT-GAAAAATGACCATT
* * *
60669997 ATACCCCTAGGTGCAAAGTGACCATT
1 ATACCCCTAAGTGAAAAATGACCATT
60670023 ATACCCCTA
1 ATACCCCTA
60670032 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.26
Consensus pattern (26 bp):
ATACCCCTAAGTGAAAAATGACCATT
Found at i:60670173 original size:27 final size:26
Alignment explanation
Indices: 60670135--60670221 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
60670125 TGGACGAAGC
60670135 GTTCTGGTGGCTATGCCACAAATATCA
1 GTTCTGGTGGCTATGCCAC-AATATCA
* *
60670162 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCA
* * ** *
60670188 GTATCTGGTGACTCTTTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCA
60670215 GTTCTGG
1 GTTCTGG
60670222 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.24
27 41 0.76
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCA
Found at i:60677787 original size:27 final size:27
Alignment explanation
Indices: 60677757--60677818 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
60677747 ATTTACTAGA
*
60677757 ATACCCCTAAGTATGAAAA-TTACCATT
1 ATACCCCTAAG-ATGAAAAGTGACCATT
* *
60677784 ATACCCCT-AGGTGAAAAGTGACCGTT
1 ATACCCCTAAGATGAAAAGTGACCATT
60677810 ATACCCCTA
1 ATACCCCTA
60677819 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 6 0.20
26 16 0.53
27 8 0.27
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGAAAAGTGACCATT
Found at i:60677960 original size:27 final size:26
Alignment explanation
Indices: 60677922--60678008 Score: 111
Period size: 27 Copynumber: 3.3 Consensus size: 26
60677912 TGGCGGAAGC
*
60677922 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
60677949 GTTCTGGTGGCTCTGCCACAATATTT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
60677975 GTATCTAGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
60678002 GTTCTGG
1 GTTCTGG
60678009 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.23
27 40 0.77
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:60679894 original size:42 final size:42
Alignment explanation
Indices: 60679843--60679924 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
60679833 TAAAAAGAAA
* *
60679843 AAAATGAAAAATGAAA-GAAG-AAATAAGAAGAAAAGGAAAAGG
1 AAAAGGAAAAAT-AAAGGAAGAAAAAAAGAAG-AAAGGAAAAGG
60679885 AAAAGGAAAAATAAAGGAAGAAAAAAAGAAGAAAGGAAAA
1 AAAAGGAAAAATAAAGGAAGAAAAAAAGAAGAAAGGAAAA
60679925 AACATTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
41 3 0.08
42 24 0.67
43 9 0.25
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (42 bp):
AAAAGGAAAAATAAAGGAAGAAAAAAAGAAGAAAGGAAAAGG
Found at i:60679911 original size:23 final size:23
Alignment explanation
Indices: 60679837--60679912 Score: 56
Period size: 23 Copynumber: 3.5 Consensus size: 23
60679827 AGCACATAAA
*
60679837 AAGAAAAAAATGAAAAATGAAA-G
1 AAGAAAAAAAGGAAAAAT-AAAGG
* *
60679860 AAG-AAATAA-G-AAGA-AAAGG
1 AAGAAAAAAAGGAAAAATAAAGG
*
60679879 AA-AAGGAAAAGGAAAAATAAAGG
1 AAGAA-AAAAAGGAAAAATAAAGG
60679902 AAGAAAAAAAG
1 AAGAAAAAAAG
60679913 AAGAAAGGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
18 3 0.08
19 4 0.10
20 6 0.15
21 2 0.05
22 8 0.20
23 15 0.38
24 2 0.05
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.05
Consensus pattern (23 bp):
AAGAAAAAAAGGAAAAATAAAGG
Found at i:60682215 original size:80 final size:79
Alignment explanation
Indices: 60682077--60682224 Score: 217
Period size: 80 Copynumber: 1.8 Consensus size: 79
60682067 CAATTGAATG
* * *
60682077 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
60682142 TTCATGCAAGTTGTT
65 TTCATGCAAGTTGTT
* *
60682157 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
60682221 ATTC
64 ATTC
60682225 GTGCGTGTGG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
79 2 0.03
80 58 0.95
81 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCATGCAAGTTGTT
Found at i:60682222 original size:40 final size:39
Alignment explanation
Indices: 60682077--60682244 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 39
60682067 CAATTGAATG
* *
60682077 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTG--TT
* * *
60682118 -TATCCGGGCTAATACCCGAAGGCATTCATGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGTT
* *
60682157 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-GTT
*
60682197 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-GTT
*
60682237 ATACCCGG
1 ATATCCGG
60682245 TTGTATTCCG
Statistics
Matches: 111, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 6 0.05
40 103 0.93
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGTT
Found at i:60682238 original size:80 final size:79
Alignment explanation
Indices: 60682077--60682244 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
60682067 CAATTGAATG
* * *
60682077 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
60682142 TTCATGCAAGTTGTT
65 TTCATGCAAGTGGTT
* *
60682157 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
* **
60682221 ATTCGTGCGTGTGGTT
64 ATTCATGCAAGTGGTT
*
60682237 ATACCCGG
1 ATATCCGG
60682245 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
79 2 0.03
80 73 0.96
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCATGCAAGTGGTT
Found at i:60688007 original size:47 final size:47
Alignment explanation
Indices: 60687947--60688103 Score: 215
Period size: 47 Copynumber: 3.3 Consensus size: 47
60687937 ACAGTAATGC
***
60687947 AGATAAACTGCCACTTAATAATATTGAAAACAAGCCACCACTTTTGT
1 AGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTTTGT
* * * *
60687994 AAATAAACCGCCACTTAATAAAATTGTGGACAAGCCACCACTTTTGC
1 AGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTTTGT
* * *
60688041 AGATAAACTGCCACTTTATAATATTGTGGGCAAGCCACCATTTTTGT
1 AGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTTTGT
*
60688088 AGATAAACTACCACTT
1 AGATAAACTGCCACTT
60688104 CTTCCTCCTT
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 95 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (47 bp):
AGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTTTGT
Found at i:60688173 original size:20 final size:20
Alignment explanation
Indices: 60688148--60688187 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
60688138 GATTGGCTAC
* *
60688148 AAAAATCACTTTTTCACTTT
1 AAAAATCAATATTTCACTTT
60688168 AAAAATCAATATTTCACTTT
1 AAAAATCAATATTTCACTTT
60688188 GGCATGTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAAATCAATATTTCACTTT
Found at i:60689959 original size:48 final size:48
Alignment explanation
Indices: 60689888--60690101 Score: 202
Period size: 48 Copynumber: 4.7 Consensus size: 48
60689878 CATTAGGGTT
60689888 TATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
1 TATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
* * *
60689936 TATGAGATCCCATGGAAGACCATGT-T------TGG----GACAT-AA
1 TATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
* * *
60689972 TATGAGATCCCACGTAAGACCATGTCTGGGACATGGAATTGGCATCGA
1 TATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
* * *
60690020 TATGAGATCCCATATAAGACCATATCTAGGATATGGCATTGGCATCGA
1 TATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
* **** *
60690068 TAT-TGATTTTGTGTAAGACCATGTCTGGGACATG
1 TATGAGATCCCATGTAAGACCATGTCTAGGACATG
60690102 ACATCGATGT
Statistics
Matches: 132, Mismatches: 22, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
36 24 0.18
37 5 0.04
41 3 0.02
43 3 0.02
47 27 0.20
48 70 0.53
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (48 bp):
TATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGA
Found at i:60689975 original size:36 final size:36
Alignment explanation
Indices: 60689935--60690005 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
60689925 ATTGGCATCG
* *
60689935 ATATGAGATCCCATGGAAGACCATGTTTGGGACATA
1 ATATGAGATCCCACGGAAGACCATGTCTGGGACATA
*
60689971 ATATGAGATCCCACGTAAGACCATGTCTGGGACAT
1 ATATGAGATCCCACGGAAGACCATGTCTGGGACAT
60690006 GGAATTGGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (36 bp):
ATATGAGATCCCACGGAAGACCATGTCTGGGACATA
Found at i:60690029 original size:84 final size:84
Alignment explanation
Indices: 60689888--60690042 Score: 265
Period size: 84 Copynumber: 1.8 Consensus size: 84
60689878 CATTAGGGTT
* * *
60689888 TATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATGAGATCCCATGGAA
1 TATGAGATCCCACGTAAGACCATGTCTAGGACATGGAATTGGCATCGATATGAGATCCCATAGAA
60689953 GACCATGTTTGGGACATAA
66 GACCATGTTTGGGACATAA
* *
60689972 TATGAGATCCCACGTAAGACCATGTCTGGGACATGGAATTGGCATCGATATGAGATCCCATATAA
1 TATGAGATCCCACGTAAGACCATGTCTAGGACATGGAATTGGCATCGATATGAGATCCCATAGAA
60690037 GACCAT
66 GACCAT
60690043 ATCTAGGATA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 66 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (84 bp):
TATGAGATCCCACGTAAGACCATGTCTAGGACATGGAATTGGCATCGATATGAGATCCCATAGAA
GACCATGTTTGGGACATAA
Found at i:60697333 original size:28 final size:28
Alignment explanation
Indices: 60697301--60697365 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
60697291 ATTTACTAGA
*
60697301 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
60697329 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
60697357 ATACCCCTA
1 ATACCCCTA
60697366 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:60697529 original size:27 final size:27
Alignment explanation
Indices: 60697471--60697560 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 27
60697461 AGGAAGCGTC
60697471 CTGGTGG-CTATGCCACAAATTATCTGTT
1 CTGGTGGCCT-TGCCACAAA-TATCTGTT
*
60697499 CTGGTGGCCTTGCCACATATATCTGTT
1 CTGGTGGCCTTGCCACAAATATCTGTT
60697526 CTGGTGGCAC-TGCCACAACATATCTGTAT
1 CTGGTGGC-CTTGCCACAA-ATATCTGT-T
60697555 CTGGTG
1 CTGGTG
60697561 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
27 23 0.41
28 24 0.43
29 9 0.16
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCTTGCCACAAATATCTGTT
Found at i:60697571 original size:29 final size:28
Alignment explanation
Indices: 60697481--60697571 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 28
60697471 CTGGTGGCTA
*
60697481 TGCCACAA-ATTATCTGTTCTGGTGGC-C
1 TGCCACAACA-TATCTGTTCTGGTGACAC
* *
60697508 TTGCCAC-ATATATCTGTTCTGGTGGCAC
1 -TGCCACAACATATCTGTTCTGGTGACAC
*
60697536 TGCCACAACATATCTGTATCTGGTGACTC
1 TGCCACAACATATCTGT-TCTGGTGACAC
*
60697565 TGTCACA
1 TGCCACA
60697572 TTTTCTGTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
27 23 0.42
28 17 0.31
29 15 0.27
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (28 bp):
TGCCACAACATATCTGTTCTGGTGACAC
Found at i:60697579 original size:55 final size:56
Alignment explanation
Indices: 60697471--60697585 Score: 132
Period size: 55 Copynumber: 2.1 Consensus size: 56
60697461 AGGAAGCGTC
*
60697471 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCTTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
* *
60697526 CTGGTGGC-ACTGCCACAACA-TATCTGTATCTGGTGA-CTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAA-ATTATCTGT-TCTGGTGACCT-TGCCACATATATCTGTAT
60697582 CTGG
1 CTGG
60697586 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
54 1 0.02
55 31 0.60
56 20 0.38
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
Found at i:60698676 original size:11 final size:10
Alignment explanation
Indices: 60698648--60698681 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
60698638 AGCCTGTAAG
60698648 TATTCTGAAT
1 TATTCTGAAT
*
60698658 TTTTCTGAAT
1 TATTCTGAAT
60698668 ATATTCTGAAT
1 -TATTCTGAAT
60698679 TAT
1 TAT
60698682 CTGTCTATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:60715419 original size:28 final size:28
Alignment explanation
Indices: 60715387--60715451 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
60715377 ATTTACTAGA
* *
60715387 ATACCCCTATGTATGTAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
60715415 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
60715443 ATACCCCTA
1 ATACCCCTA
60715452 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:60715615 original size:27 final size:28
Alignment explanation
Indices: 60715577--60715671 Score: 97
Period size: 27 Copynumber: 3.5 Consensus size: 28
60715567 TGCCACAAAT
*
60715577 TATCTGT-TCTGGTGGCCCTGTCACATA
1 TATCTGTATCTGGTGGCACTGTCACATA
* *
60715604 TATCTGT-TCTGGTGGCACTGCCACAACA
1 TATCTGTATCTGGTGGCACTGTCAC-ATA
* * *
60715632 TATCTATATCTGGTGACTCTGTCACAT-
1 TATCTGTATCTGGTGGCACTGTCACATA
*
60715659 TTTCTGTATCTGG
1 TATCTGTATCTGG
60715672 CAGCCATGCT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 33 0.59
28 9 0.16
29 14 0.25
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (28 bp):
TATCTGTATCTGGTGGCACTGTCACATA
Found at i:60715665 original size:55 final size:56
Alignment explanation
Indices: 60715557--60715671 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
60715547 AGGAAGCGTC
* *
60715557 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGTCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGACCCTGTCACATATATCTGTAT
* *
60715612 CTGGTGGC-ACTGCCACAACA-TATCTATATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAA-ATTATCTAT-TCTGGTGACCCTGTCACATATATCTGTAT
60715668 CTGG
1 CTGG
60715672 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 28 0.54
56 23 0.44
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAATTATCTATTCTGGTGACCCTGTCACATATATCTGTAT
Found at i:60718899 original size:50 final size:49
Alignment explanation
Indices: 60718788--60719019 Score: 243
Period size: 49 Copynumber: 4.7 Consensus size: 49
60718778 CTAGTACGCA
* * * *
60718788 TAGTAGCCTGCACTTAGTACCACACATGAGACCAATTATC-CAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGA-TACACG
* **
60718837 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACACG
* * * * * *
60718887 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGATACACG
* * * *
60718938 TAG-AACCTTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCC-TGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
*
60718987 TAGTAACCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
60719020 TCACAATAGA
Statistics
Matches: 151, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
49 65 0.43
50 53 0.35
51 33 0.22
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
Found at i:60720484 original size:17 final size:17
Alignment explanation
Indices: 60720462--60720497 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
60720452 AATGGTCAAG
60720462 TTTGTTTATGGTTTGTA
1 TTTGTTTATGGTTTGTA
60720479 TTTGTTTATGGTTTGTA
1 TTTGTTTATGGTTTGTA
60720496 TT
1 TT
60720498 ATGGTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.22, T:0.67
Consensus pattern (17 bp):
TTTGTTTATGGTTTGTA
Found at i:60723391 original size:2 final size:2
Alignment explanation
Indices: 60723384--60723409 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60723374 ATGTAGTAAA
60723384 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60723410 CAAACAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60725408 original size:44 final size:43
Alignment explanation
Indices: 60725358--60725440 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
60725348 CATGTTGATA
*
60725358 TCTTCGATCTGCTCTCCGCCGAACACAGAGACGCCAAATCTGCT
1 TCTTCGATCTGCTCTCCGAC-AACACAGAGACGCCAAATCTGCT
* * * * *
60725402 TCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCCGACAACACAGAGACGCCAAATC
60725441 ATCTTAGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (43 bp):
TCTTCGATCTGCTCTCCGACAACACAGAGACGCCAAATCTGCT
Found at i:60730729 original size:40 final size:39
Alignment explanation
Indices: 60730665--60730832 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 39
60730655 TCTTTGGAAT
* **
60730665 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
60730704 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
60730744 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * * *
60730784 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
60730824 TTAGCCCGG
1 TTAGCCCGG
60730833 GTATCATTCA
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:60730813 original size:80 final size:80
Alignment explanation
Indices: 60730665--60730832 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
60730655 TCTTTGGAAT
* * **
60730665 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTTGCAC
*
60730729 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGAC
** * *
60730744 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCA-TTAGC
1 TTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTT-GC
*
60730807 ATAAATGCCTTCGGGAC
64 ACAAATGCCTTCGGGAC
60730824 TTAGCCCGG
1 TTAGCCCGG
60730833 GTATCATTCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 6 0.08
80 68 0.89
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTTGCAC
AAATGCCTTCGGGAC
Found at i:60733440 original size:47 final size:47
Alignment explanation
Indices: 60733371--60733667 Score: 477
Period size: 47 Copynumber: 6.3 Consensus size: 47
60733361 CCCTTCGGGA
* *
60733371 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
60733418 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
60733465 CTTATCACACATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
60733512 CTTATCACACATATACACTTTCATATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
60733559 CTTATCACATATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
60733606 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
60733653 CTTATCACACATATA
1 CTTATCACACATATA
60733668 TGTATATGAT
Statistics
Matches: 235, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 235 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:60735030 original size:24 final size:24
Alignment explanation
Indices: 60734989--60735034 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
60734979 TCCATAGCCA
60734989 CAATGGCCGAAAGATCTAGACATCT
1 CAATGGCCGAAAGATCTA-ACATCT
**
60735014 CAAT-GCCGAAATTTCTAACAT
1 CAATGGCCGAAAGATCTAACAT
60735035 GGGTTGCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 11 0.58
25 4 0.21
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (24 bp):
CAATGGCCGAAAGATCTAACATCT
Found at i:60738347 original size:26 final size:26
Alignment explanation
Indices: 60738311--60738362 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
60738301 TCAATGATGG
60738311 TTTGGCCTTTAATTCGGCTACTAACA
1 TTTGGCCTTTAATTCGGCTACTAACA
60738337 TTTGGCCTTTAATTCGGCTACTAACA
1 TTTGGCCTTTAATTCGGCTACTAACA
60738363 CATTGTCGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (26 bp):
TTTGGCCTTTAATTCGGCTACTAACA
Found at i:60741149 original size:46 final size:46
Alignment explanation
Indices: 60741096--60741271 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
60741086 TATTTGGGCA
60741096 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
60741142 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
60741189 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
60741235 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60741272 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:60741251 original size:93 final size:93
Alignment explanation
Indices: 60741092--60741263 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60741082 GGGATATTTG
* *
60741092 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60741157 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
60741185 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60741250 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
60741264 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:60745874 original size:40 final size:40
Alignment explanation
Indices: 60745825--60745992 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
60745815 TCTTCGGAAT
* * *
60745825 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
60745864 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
60745904 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
60745944 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
60745984 TTAGCCCGG
1 TTAGCCCGG
60745993 GTATCATTCA
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.03
40 102 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:60745952 original size:80 final size:80
Alignment explanation
Indices: 60745816--60745992 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
60745806 AACCGAGTTT
* * * * **
60745816 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
60745880 AACTT-GCACAAATGC
66 AA-TTAGCACAAATGC
* ** *
60745895 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
* *
60745959 TCATTAGCATAAATGC
65 TAATTAGCACAAATGC
60745975 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
60745993 GTATCATTCA
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 12 0.15
80 68 0.83
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AATTAGCACAAATGC
Found at i:60755741 original size:2 final size:2
Alignment explanation
Indices: 60755734--60755759 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60755724 TAATGTAGTA
60755734 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60755760 TAACAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60759293 original size:15 final size:15
Alignment explanation
Indices: 60759273--60759324 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
60759263 ATTCATTTTT
60759273 TTTTATTTGTAGACA
1 TTTTATTTGTAGACA
* * *
60759288 TTTTATTGGCAGAAA
1 TTTTATTTGTAGACA
* *
60759303 TCTTAATTGTAGACA
1 TTTTATTTGTAGACA
60759318 TTTTATT
1 TTTTATT
60759325 GGCAGAAATC
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (15 bp):
TTTTATTTGTAGACA
Found at i:60759315 original size:30 final size:30
Alignment explanation
Indices: 60759279--60759340 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
60759269 TTTTTTTTAT
60759279 TTGTAGACATTTTATTGGCAGAAATCTTAA
1 TTGTAGACATTTTATTGGCAGAAATCTTAA
60759309 TTGTAGACATTTTATTGGCAGAAATCTTAA
1 TTGTAGACATTTTATTGGCAGAAATCTTAA
60759339 TT
1 TT
60759341 AACTCTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (30 bp):
TTGTAGACATTTTATTGGCAGAAATCTTAA
Found at i:60766033 original size:16 final size:15
Alignment explanation
Indices: 60766012--60766043 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
60766002 TTTAGGATAA
60766012 TAATTTAGAGTTAATT
1 TAATTTAGA-TTAATT
60766028 TAATTTAGATTAATT
1 TAATTTAGATTAATT
60766043 T
1 T
60766044 TTACTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (15 bp):
TAATTTAGATTAATT
Found at i:60769235 original size:22 final size:22
Alignment explanation
Indices: 60769188--60769236 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
60769178 TTATATTATA
* *
60769188 TAAATTTATTATAATTTAATTG
1 TAAATTTACTATAATTTAATTC
*
60769210 TAAATTTACTCTAATTTACA-TC
1 TAAATTTACTATAATTTA-ATTC
60769232 TAAAT
1 TAAAT
60769237 ATATTTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (22 bp):
TAAATTTACTATAATTTAATTC
Found at i:60781686 original size:43 final size:41
Alignment explanation
Indices: 60781639--60781730 Score: 94
Period size: 43 Copynumber: 2.1 Consensus size: 41
60781629 TATTTTATAT
* * *
60781639 TTTTACCCCAAATCCCCCAAACCTTTTTTCTTTCCCCCCAAAA
1 TTTTACCCCAAA-CCCCCAAAAC-TTTTTATTCCCCCCCAAAA
* * *
60781682 TTTTACTCCCCCAACCCTCAAAACTTTTTATTCCCCCCCAAAC
1 TTTTA--CCCCAAACCCCCAAAACTTTTTATTCCCCCCCAAAA
60781725 TTTTAC
1 TTTTAC
60781731 TTTTCACCCT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
41 1 0.02
43 26 0.63
44 8 0.20
45 6 0.15
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (41 bp):
TTTTACCCCAAACCCCCAAAACTTTTTATTCCCCCCCAAAA
Found at i:60782919 original size:13 final size:13
Alignment explanation
Indices: 60782901--60782925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60782891 TTCTCACCAC
60782901 AAAAAATAAAAAT
1 AAAAAATAAAAAT
60782914 AAAAAATAAAAA
1 AAAAAATAAAAA
60782926 ATCCCTAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:60783743 original size:119 final size:118
Alignment explanation
Indices: 60783522--60783753 Score: 297
Period size: 119 Copynumber: 2.0 Consensus size: 118
60783512 TATATTATAT
*** *
60783522 CTACCATAAAGTTAATTACATGTTTAGGGTTTAAGGTTATTATCATTAATATAAAAATGCACATT
1 CTACCATAAAGTTAATTACATGTTTACCATTTAAGCTTATTATCATTAATATAAAAATGCACATT
* *
60783587 ATAATATCACAATTGTATATAAGGTTATATACAATTAATAATATACTTATAAA
66 ATAATAACACAATTGTATATAAGGATATATACAATTAATAATATACTTATAAA
* * * *
60783640 CTACCATAATGTTAGTTACATGTTTTCCATTTAAGCTTATCTATCATTAATATAAAAATGTACAT
1 CTACCATAAAGTTAATTACATGTTTACCATTTAAGCTTAT-TATCATTAATATAAAAATGCACAT
* * * *
60783705 TATAATAACATAGTTGTATATAGGGATACGTAT-C-ATTAATAATCTACTT
65 TATAATAACACAATTGTATATAAGGATA--TATACAATTAATAATATACTT
60783754 TAATTATATA
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
118 33 0.34
119 60 0.62
120 1 0.01
121 3 0.03
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.39
Consensus pattern (118 bp):
CTACCATAAAGTTAATTACATGTTTACCATTTAAGCTTATTATCATTAATATAAAAATGCACATT
ATAATAACACAATTGTATATAAGGATATATACAATTAATAATATACTTATAAA
Found at i:60783868 original size:14 final size:13
Alignment explanation
Indices: 60783849--60783885 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 13
60783839 AAGAATGCAC
60783849 ATTATAATATCATA
1 ATTATAATAT-ATA
60783863 ATTAT-ATA-ATA
1 ATTATAATATATA
60783874 ATTATAATATAT
1 ATTATAATATAT
60783886 TTGTAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 8 0.38
12 3 0.14
13 5 0.24
14 5 0.24
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTATAATATATA
Found at i:60783954 original size:3 final size:3
Alignment explanation
Indices: 60783946--60783973 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
60783936 GTATGTATAC
60783946 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
60783974 TGAGTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:60788590 original size:56 final size:53
Alignment explanation
Indices: 60788487--60788647 Score: 187
Period size: 54 Copynumber: 2.9 Consensus size: 53
60788477 TTTATTTTTA
* * * * * **
60788487 TCCCCACATGATGCCATAGTCCTAGAATAGGTCTTACACTATGTGGTCTTTATT
1 TCCCCATATGATG-CATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCACC
*
60788541 TCCCCATATGATGTCATAGTCACCATGACTAGGTCTCACACTATATGGTCTTCACC
1 TCCCCATATGATG-CATAGTC-CCA-GACTAGGTCTTACACTATATGGTCTTCACC
* *
60788597 TCCCCATATGGTGCAATAGTCCCAGACTAAGTCTTACACTATATGGTCTTC
1 TCCCCATATGATGC-ATAGTCCCAGACTAGGTCTTACACTATATGGTCTTC
60788648 TTGCCATGGC
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
54 44 0.48
55 6 0.07
56 42 0.46
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (53 bp):
TCCCCATATGATGCATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCACC
Found at i:60791339 original size:2 final size:2
Alignment explanation
Indices: 60791332--60791362 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
60791322 TTGATAGAAA
*
60791332 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
60791363 GTGGGTTCGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:60791413 original size:29 final size:29
Alignment explanation
Indices: 60791370--60791444 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
60791360 ATAGTGGGTT
* *
60791370 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACC
* *
60791399 TGCACACTTAGTGCCATGCATTTCAAGCC
1 CGCACACTTAGTGCCATGCATTTCAAACC
60791428 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
60791445 TCTCTCAACC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACC
Found at i:60793964 original size:49 final size:49
Alignment explanation
Indices: 60793900--60794087 Score: 268
Period size: 49 Copynumber: 3.8 Consensus size: 49
60793890 TAGCCAAAGC
* * *
60793900 TATCTGGTACGCATAGTAGCCTGCAGTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
60793949 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* *
60794000 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
60794049 TATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
60794088 CGTGACCTCA
Statistics
Matches: 122, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
49 75 0.61
50 6 0.05
51 41 0.34
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:60794040 original size:100 final size:100
Alignment explanation
Indices: 60793900--60794092 Score: 350
Period size: 100 Copynumber: 1.9 Consensus size: 100
60793890 TAGCCAAAGC
* *
60793900 TATCTGGTACGCATAGTAGCCTGCAGTTAGTACTACACATGCGACCAATTATCCGGTACACATAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAG
60793965 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
66 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
*
60794000 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAG
*
60794065 TAGCCTGTACTTAGTACTACACACGTGA
66 TAGCCTGCACTTAGTACTACACACGTGA
60794093 CCTCACAATA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAG
TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:60795889 original size:71 final size:68
Alignment explanation
Indices: 60795760--60795896 Score: 179
Period size: 71 Copynumber: 2.0 Consensus size: 68
60795750 TTTAATAGAT
* *
60795760 TTAATATTAAATTTAATTTAATACTTATCTTAATAGGATTTTATTAATTTAATATTAAAGTGATT
1 TTAATATTAAATTTAATTTAATACTTATCTTAATAGAATTTTATTAATTTAATATTAAAGTAATT
60795825 ATC
66 ATC
* *
60795828 TTAATATTAAATTTAA-TTATTATTTATCTTGTATATA-AATATTCTATTAATTTAATATTAAAG
1 TTAATATTAAATTTAATTTAATACTTATC-T-TA-ATAGAAT-TT-TATTAATTTAATATTAAAG
60795891 TAATTA
61 TAATTA
60795897 AGTTAAATCA
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
67 10 0.17
68 17 0.28
69 4 0.07
70 5 0.08
71 24 0.40
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (68 bp):
TTAATATTAAATTTAATTTAATACTTATCTTAATAGAATTTTATTAATTTAATATTAAAGTAATT
ATC
Found at i:60797377 original size:15 final size:15
Alignment explanation
Indices: 60797359--60797399 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
60797349 TTAATTTTTG
*
60797359 TTTTCATTATTTATT
1 TTTTAATTATTTATT
* *
60797374 TTTTAAATCTTTATT
1 TTTTAATTATTTATT
60797389 TTTTAATTATT
1 TTTTAATTATT
60797400 GAATTTCTTC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTAATTATTTATT
Found at i:60798542 original size:3 final size:3
Alignment explanation
Indices: 60798534--60798574 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
60798524 GGATGTTAAC
*
60798534 GAT GAT GAT GGT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
60798575 GCACCCTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.32, C:0.00, G:0.37, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:60801762 original size:37 final size:37
Alignment explanation
Indices: 60801699--60801810 Score: 99
Period size: 37 Copynumber: 3.1 Consensus size: 37
60801689 ATTCCAAAAA
*
60801699 TAATATTATTTTAATAGTTTAATATTAAATTAA-ATT
1 TAATATTATCTTAATAGTTTAATATTAAATTAATATT
* *
60801735 TAATACTTATCTTAATAGTATT-TTATTAATTTAATATT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTAATATT
* * *
60801773 AAAGTGATTATCTTAATA--TTAA-ATTAATTTAATGTT
1 TAA-T-ATTATCTTAATAGTTTAATATTAAATTAATATT
60801809 TA
1 TA
60801811 TCTTGTAGTT
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
36 21 0.33
37 22 0.35
38 7 0.11
39 12 0.19
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (37 bp):
TAATATTATCTTAATAGTTTAATATTAAATTAATATT
Found at i:60804996 original size:26 final size:22
Alignment explanation
Indices: 60804951--60805004 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 22
60804941 GGCTTACACA
60804951 TTAT-ATATTTATTTTATAATTG
1 TTATAATATTTATTTTATAA-TG
*
60804973 TTTATAATATTTATATTATGTAATG
1 -TTATAATATTTAT-TT-TATAATG
60804998 TTATAAT
1 TTATAAT
60805005 TGTGATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.15
24 15 0.56
25 4 0.15
26 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (22 bp):
TTATAATATTTATTTTATAATG
Found at i:60807324 original size:16 final size:16
Alignment explanation
Indices: 60807293--60807331 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
60807283 CTTCTTTTAG
*
60807293 TTGTTT-TAATTTTCT
1 TTGTTTCTAAATTTCT
60807308 TTGTTTCTAAATTTCT
1 TTGTTTCTAAATTTCT
60807324 TTGTTTCT
1 TTGTTTCT
60807332 TCTTTCAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.13, C:0.10, G:0.08, T:0.69
Consensus pattern (16 bp):
TTGTTTCTAAATTTCT
Found at i:60815520 original size:21 final size:23
Alignment explanation
Indices: 60815479--60815520 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
60815469 TAATGTTAAA
*
60815479 ATATATATAATATATACATATAT
1 ATATATATAATATATAAATATAT
60815502 ATATATATAA-A-ATAAATAT
1 ATATATATAATATATAAATAT
60815521 TGAAAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 1 0.06
23 10 0.56
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
ATATATATAATATATAAATATAT
Found at i:60815894 original size:3 final size:3
Alignment explanation
Indices: 60815810--60815885 Score: 100
Period size: 3 Copynumber: 24.7 Consensus size: 3
60815800 AAGTACCTAT
*
60815810 TAA TAA TAT TATA TAA -ATA TAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA T-AA TAA TAA TAA TAA TAA TAA TAA
*
60815857 TAA TAA TAA TAA TAA TAA TAA CAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
60815886 GCAATAATAG
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
2 1 0.02
3 58 0.89
4 6 0.09
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:60816065 original size:3 final size:3
Alignment explanation
Indices: 60816057--60816372 Score: 192
Period size: 3 Copynumber: 103.3 Consensus size: 3
60816047 AATATTTATA
* *
60816057 AAT AAT AAT AGT AAT -GT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
60816104 ATT AAGT -AT AGT -AT AAAT AAT ATGT ACAT AAC AGT AAT AAT AAT AAGT
1 AAT AA-T AAT AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T
*
60816152 AAC AAT AAT AAT AAT AAT AAT -AT AGA- AATT CAA- AA- AAGT AA- ACAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T -AAT AAT AA-T AAT A-AT
* * * *
60816197 AAT -AT AAT GAT ATT AA- AAT AA- AAT -AT ACACT AAT ATT TAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT -AAT
*
60816241 AAT AAT AGT AAAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
60816287 AAT AAT AAT AAT AAT ATT AAGT -AT AGT -AT AAAT AAT ATAT ACAT AAC
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT A-AT A-AT AAT
* *
60816334 AGT AAT AATT AAT AAGT AAC AAT AAT AAT AAT AAT AAT A
1 AAT AAT AA-T AAT AA-T AAT AAT AAT AAT AAT AAT AAT A
60816373 TAGAAATTAA
Statistics
Matches: 244, Mismatches: 38, Indels: 62
0.71 0.11 0.18
Matches are distributed among these distances:
2 21 0.09
3 184 0.75
4 35 0.14
5 4 0.02
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:60816429 original size:16 final size:16
Alignment explanation
Indices: 60816254--60816428 Score: 54
Period size: 18 Copynumber: 10.1 Consensus size: 16
60816244 AATAGTAAAT
*
60816254 AATAATAATAATAATAA
1 AATAA-AATAATATTAA
*
60816271 TAATAATAATAATAATAA
1 -AATAA-AATAATATTAA
60816289 TAATAATAATAATATTAA
1 -AATAA-AATAATATTAA
60816307 GTATAGTATAAATAATA-TATA
1 --A-A-TA-AAATAATATTA-A
* *
60816328 CATAACAGTAATAATTAA
1 AATAA-AATAAT-ATTAA
*
60816346 TAAGTAACAATAATAATAA
1 -AA-TAA-AATAATATTAA
* *
60816365 TAATAATATAGAAATTAA
1 -AATAAAATA-ATATTAA
* * *
60816383 AA-AAACTAA-A-CAT
1 AATAAAATAATATTAA
*
60816396 AATATAATAATATTAA
1 AATAAAATAATATTAA
60816412 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
60816427 AA
1 AA
60816429 AATACTATGT
Statistics
Matches: 125, Mismatches: 18, Indels: 31
0.72 0.10 0.18
Matches are distributed among these distances:
13 3 0.02
14 6 0.05
15 8 0.06
16 16 0.13
17 12 0.10
18 45 0.36
19 12 0.10
20 12 0.10
21 10 0.08
22 1 0.01
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:60818522 original size:72 final size:72
Alignment explanation
Indices: 60818386--60818841 Score: 554
Period size: 72 Copynumber: 6.2 Consensus size: 72
60818376 TGATTTTTTT
* * * ** * **
60818386 TTTTGAAAGATAGAAATTGAAAATTCCTCAGCATGTGAATCGAGGCTCAACTCACCTCTCGCAAT
1 TTTTGAAA-ACAGAAATTGAAAATACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
*
60818451 ATGAGTTGAT
63 ATGAGTTGAA
* * *
60818461 TTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATG
1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
60818526 AGTTGAA
66 AGTTGAA
* * * *
60818533 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATG
1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
* *
60818598 AGTCGATTTTT
66 AGTTGA----A
* * * *
60818609 TTTTGAAAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCT
1 TTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
60818674 GAGTTGAA
65 GAGTTGAA
* * *
60818682 TTTTGAAAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATG
1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
60818747 AGTTGAA
66 AGTTGAA
* * *
60818754 TTTTGAAAATAGAAA-TAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATAT
1 TTTTGAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
*
60818818 GAATTGAA
65 GAGTTGAA
*
60818826 TTTTGAAAATAGAAAT
1 TTTTGAAAACAGAAAT
60818842 AAAAATATCA
Statistics
Matches: 333, Mismatches: 41, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
71 4 0.01
72 234 0.70
73 5 0.02
74 18 0.05
75 8 0.02
76 5 0.02
77 59 0.18
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (72 bp):
TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
AGTTGAA
Found at i:60818661 original size:149 final size:144
Alignment explanation
Indices: 60818386--60818841 Score: 580
Period size: 149 Copynumber: 3.1 Consensus size: 144
60818376 TGATTTTTTT
* ** *
60818386 TTTTGAAAGATAGAAATTGAAAATT-CCTCAGCATGTGAATCGAGGCTCAACTCACCTCTCGCAA
1 TTTTGAAA-ACAGAAATTG-AAATTACCTCAGCATGT-CCT-GAGGCTCAACTCATCTCTCGCAA
* *
60818450 TATGAGTTGATTTTTGAAAACAT--AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCAT
62 TATGAGTTGATTTTTGAAAA-ATAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCAT
60818513 TACTCGCAATATGAGTTGAA
126 T-CTCGCAATATGAGTTGAA
*
60818533 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATG
1 TTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCATCTCTCGCAATATG
* *
60818598 AGTCGATTTTTTTTTGAAAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATT
66 AGTTGA----TTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA-T
*
60818663 TCTCGCAATCTGAGTTGAA
126 TCTCGCAATATGAGTTGAA
* * * *
60818682 TTTTGAAAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATG
1 TTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCATCTCTCGCAATATG
* * *
60818747 AGTTGAATTTTG-AAAATAGAAA-TAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
66 AGTTGATTTTTGAAAAATAGAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCT
* *
60818810 CGTAATATGAATTGAA
129 CGCAATATGAGTTGAA
*
60818826 TTTTGAAAATAGAAAT
1 TTTTGAAAACAGAAAT
60818842 AAAAATATCA
Statistics
Matches: 276, Mismatches: 24, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
143 5 0.02
144 101 0.37
145 11 0.04
146 19 0.07
147 10 0.04
148 10 0.04
149 118 0.43
150 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (144 bp):
TTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCATCTCTCGCAATATG
AGTTGATTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTCTCG
CAATATGAGTTGAA
Found at i:60818720 original size:221 final size:223
Alignment explanation
Indices: 60818330--60818819 Score: 714
Period size: 221 Copynumber: 2.2 Consensus size: 223
60818320 AAATTGCCAA
* * * * * *
60818330 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTTTGAAAG
1 TACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTCGA-TTTTTTTTTTGAAAA
*
60818395 ATAGAAATTGAAAATTCCTCAGCATGTGAATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65 ATAGAAATTGAAAATACCTCAGCATGT-AATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * *
60818460 TTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATAT
129 ATTTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTACTCACAATAT
**
60818525 GAGTTGAATTTTGAAAACAGAAATTGAAAT
194 GAGTTGAATTTTGAAAACAGAAATAAAAAT
60818555 TACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTCGA-TTTTTTTTTGAAAAA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTCGATTTTTTTTTTGAAAAA
* * ** *
60818619 TAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAAT
66 TAGAAATTGAAAATACCTCAGCATGTAATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
* *
60818683 TTTGAAAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
131 TTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTACTCACAATATGA
*
60818748 GTTGAATTTTGAAAATAGAAATAAAAAT
196 GTTGAATTTTGAAAACAGAAATAAAAAT
* * * *
60818776 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGA
60818820 ATTGAATTTT
Statistics
Matches: 239, Mismatches: 26, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
221 156 0.65
223 39 0.16
225 44 0.18
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (223 bp):
TACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTCGATTTTTTTTTTGAAAAA
TAGAAATTGAAAATACCTCAGCATGTAATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
TTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTACTCACAATATGA
GTTGAATTTTGAAAACAGAAATAAAAAT
Found at i:60830887 original size:2 final size:2
Alignment explanation
Indices: 60830880--60830913 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
60830870 TAATGTTAAA
*
60830880 AT AT AT AT A- AT AT AA AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
60830914 AAATAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:60830890 original size:17 final size:17
Alignment explanation
Indices: 60830876--60830911 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
60830866 CTAGTAATGT
60830876 TAAA-ATATATATAATA
1 TAAATATATATATAATA
60830892 TAAATATATATATATATA
1 TAAATATATATATA-ATA
60830910 TA
1 TA
60830912 TAAAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 9 0.50
18 5 0.28
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATATATATATAATA
Found at i:60831035 original size:12 final size:12
Alignment explanation
Indices: 60831004--60831047 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
60830994 TGACAGTGAA
60831004 AATAATATATAT
1 AATAATATATAT
*
60831016 AGTAATATATAT
1 AATAATATATAT
* *
60831028 AATGATATATGAA
1 AATAATATAT-AT
60831041 AATAATA
1 AATAATA
60831048 CTATGTATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 19 0.73
13 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (12 bp):
AATAATATATAT
Found at i:60831237 original size:3 final size:3
Alignment explanation
Indices: 60831213--60831747 Score: 183
Period size: 3 Copynumber: 174.7 Consensus size: 3
60831203 AAGTACCTAT
*
60831213 TAA TAA TAT TATA TAA -ATA TAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* * * *
60831260 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA AAA TACA AAA GAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * * * * *
60831306 -AG T-A TGACG TAA TAA TGAGG TAA GAA AAA TAA -AA T-A TAA T-A TAT
1 TAA TAA T-A-A TAA TAA T-A-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* **
60831350 TAGA TATA TAA -ATA TAA TAG TAA -ATA TAA TAA TGT TAA -AA -AA TACCA
1 TA-A TA-A TAA TA-A TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TA--A
* *
60831397 TACG TAA -AGA GT-A TATA TAA -ACA TATA TAA TAA AAA T-A TACA CTAA
1 TA-A TAA TA-A -TAA TA-A TAA TA-A TA-A TAA TAA TAA TAA TA-A -TAA
* * * *
60831443 TAT TTA TAAA TAA TAA TAG TAA T-G TAA TAA TAA TAA TAA T-A TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
60831487 TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA TAA CAG TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA TAA TAA
*
60831534 TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA T-A TAGA -AA TTCAA -AA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA -T-AA TAA
* *
60831580 -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A TACA CTAA
1 TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A -TAA
* * *
60831623 TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
** * *
60831669 TAA TAA TAA TAA TAA TGG TAA TAA TAA TAA T-A TACA TAA CAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA
*
60831714 TAA TTAA TAA GTAA CAA TAA TAA TAA TAA TAA TA
1 TAA -TAA TAA -TAA TAA TAA TAA TAA TAA TAA TA
60831748 TAGAAATTCA
Statistics
Matches: 397, Mismatches: 72, Indels: 126
0.67 0.12 0.21
Matches are distributed among these distances:
2 44 0.11
3 282 0.71
4 60 0.15
5 11 0.03
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:60838800 original size:36 final size:37
Alignment explanation
Indices: 60838730--60838801 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 37
60838720 CGGTACTCTA
* *
60838730 TGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCAT
1 TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCAT
*
60838767 TGGTGTGTAGGGATGGGT-GGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCA
60838802 CATAATGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 16 0.50
37 16 0.50
ACGTcount: A:0.14, C:0.12, G:0.36, T:0.38
Consensus pattern (37 bp):
TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCAT
Found at i:60838811 original size:37 final size:37
Alignment explanation
Indices: 60838733--60838820 Score: 88
Period size: 37 Copynumber: 2.4 Consensus size: 37
60838723 TACTCTATGG
* * * **
60838733 TGTGTAGGGTTGGATGGGTTGATTTTATCCCCATTGG
1 TGTGTAGGGATGGATGGGTCGATTTTATCCCCAATAA
*
60838770 TGTGTAGGGATGGGT-GGTCGATTTTATCCCCACATAA
1 TGTGTAGGGATGGATGGGTCGATTTTATCCCCA-ATAA
* *
60838807 TGTGTCGGGTTGGA
1 TGTGTAGGGATGGA
60838821 CGGAGTTGGT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
36 16 0.39
37 25 0.61
ACGTcount: A:0.16, C:0.12, G:0.35, T:0.36
Consensus pattern (37 bp):
TGTGTAGGGATGGATGGGTCGATTTTATCCCCAATAA
Found at i:60852885 original size:24 final size:24
Alignment explanation
Indices: 60852873--60852946 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 24
60852863 ATCTTATTTT
60852873 TTAT-TTATTTATATAATTATTCA
1 TTATATTATTTATATAATTATTCA
* *
60852896 TTATATTATTTATATTATTATACA
1 TTATATTATTTATATAATTATTCA
60852920 -T-T-TTATTTATA-AATT-TT-A
1 TTATATTATTTATATAATTATTCA
60852938 TTATATTAT
1 TTATATTAT
60852947 ATATTTTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.02
19 2 0.05
20 4 0.09
21 13 0.30
22 1 0.02
23 5 0.12
24 17 0.40
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATATTATTTATATAATTATTCA
Found at i:60852924 original size:17 final size:15
Alignment explanation
Indices: 60852876--60852954 Score: 60
Period size: 17 Copynumber: 5.3 Consensus size: 15
60852866 TTATTTTTTA
60852876 TTTATTTA-TATAA-
1 TTTATTTATTATAAT
* *
60852889 -TTATTCATTATATT
1 TTTATTTATTATAAT
60852903 ATTTATATTATTATACAT
1 -TTTAT-TTATTATA-AT
60852921 TTTATTTA-TA-AAT
1 TTTATTTATTATAAT
60852934 TTTATTATATTATATAT
1 TTTATT-TATTATA-AT
60852951 TTTA
1 TTTA
60852955 CTACGTACAT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
12 6 0.12
13 12 0.23
14 3 0.06
15 4 0.08
16 8 0.15
17 18 0.35
18 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTATTTATTATAAT
Found at i:60852946 original size:21 final size:22
Alignment explanation
Indices: 60852873--60852946 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 22
60852863 ATCTTATTTT
60852873 TTAT-TTATTTATATAATTATTCA
1 TTATATTATTTATA-AATTATT-A
60852896 TTATATTATTTAT--ATTATTA
1 TTATATTATTTATAAATTATTA
* *
60852916 TACATTTTATTTATAAATT-TTA
1 T-TATATTATTTATAAATTATTA
60852938 TTATATTAT
1 TTATATTAT
60852947 ATATTTTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
20 2 0.05
21 22 0.51
22 4 0.09
23 7 0.16
24 8 0.19
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATATTATTTATAAATTATTA
Found at i:60853033 original size:26 final size:27
Alignment explanation
Indices: 60852976--60853033 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 27
60852966 ATTCCTTACA
* *
60852976 TTTTTATTTTATTATAAATTATATATT
1 TTTTTATTATATTATAAATTATAAATT
* * *
60853003 CTTTTATTAT-TTATTAATTGTAAATT
1 TTTTTATTATATTATAAATTATAAATT
60853029 TTTTT
1 TTTTT
60853034 TAATTTTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (27 bp):
TTTTTATTATATTATAAATTATAAATT
Found at i:60859797 original size:96 final size:96
Alignment explanation
Indices: 60859622--60859808 Score: 304
Period size: 96 Copynumber: 1.9 Consensus size: 96
60859612 TGTCCGAGGA
* *
60859622 AGTCTGTCATAGATGGGAACGATGGAGTAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
1 AGTCTGTCATAGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
* * *
60859687 AACACTGAAGCCAAGAGGGTAAAGAGGAACT
66 AACACCGAACCCAAGAGGGCAAAGAGGAACT
*
60859718 AGTCTGTCATTGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
1 AGTCTGTCATAGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
60859783 AA-AGCCGAACCCAAGAGGGCAAAGAG
66 AACA-CCGAACCCAAGAGGGCAAAGAG
60859809 AAGCAAAAGA
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
95 1 0.01
96 83 0.99
ACGTcount: A:0.36, C:0.17, G:0.34, T:0.13
Consensus pattern (96 bp):
AGTCTGTCATAGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
AACACCGAACCCAAGAGGGCAAAGAGGAACT
Found at i:60865302 original size:96 final size:96
Alignment explanation
Indices: 60865144--60865318 Score: 262
Period size: 96 Copynumber: 1.8 Consensus size: 96
60865134 TGCCATCGAT
* ** *
60865144 GGGAATGATGGAGTTGACAAGGAGCCCAAGAAGCTTGGTTCAAACAAGGGAAACACTAAAGCCAA
1 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCAAACAAAGGAAACACTAAAGCCAA
60865209 GAAGGCAAAGAGGAACAAGTCTATCATCGGA
66 GAAGGCAAAGAGGAACAAGTCTATCATCGGA
* * *
60865240 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAAGGAAA-AGCTGAAGCCA
1 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCAAACAAAGGAAACA-CTAAAGCCA
*
60865304 AGAGGGCAAAGAGGA
65 AGAAGGCAAAGAGGA
60865319 GCAAAAAGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 69 0.99
ACGTcount: A:0.40, C:0.17, G:0.33, T:0.11
Consensus pattern (96 bp):
GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCAAACAAAGGAAACACTAAAGCCAA
GAAGGCAAAGAGGAACAAGTCTATCATCGGA
Found at i:60867177 original size:96 final size:96
Alignment explanation
Indices: 60867020--60867194 Score: 253
Period size: 96 Copynumber: 1.8 Consensus size: 96
60867010 TGTCATCGAT
* * * *
60867020 GGGAACGATGGAGCAGACAATGAGCCCAAGAAGCCTTGTTCGAGCAAGGGAAACGCTGAAGCAAA
1 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGACTTGTTCGAGCAAGGGAAAAGCCGAAGCAAA
60867085 AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
66 AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
* * *
60867116 GGGAATGATGGAGTAGACAAGGAGCCCAAGAA-ACTTGGTTCGAGCAAGGGAAAAGCCGAAGCCA
1 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGACTT-GTTCGAGCAAGGGAAAAGCCGAAGCAA
* *
60867180 AGATGGCAAAGAGGA
65 AAAGGGCAAAGAGGA
60867195 GCAAAAAGAA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
95 3 0.04
96 66 0.96
ACGTcount: A:0.39, C:0.18, G:0.33, T:0.10
Consensus pattern (96 bp):
GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGACTTGTTCGAGCAAGGGAAAAGCCGAAGCAAA
AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
Found at i:60881769 original size:15 final size:15
Alignment explanation
Indices: 60881749--60881780 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
60881739 ATAGAGTAAA
60881749 GGGTGTCAGGTAGGC
1 GGGTGTCAGGTAGGC
60881764 GGGTGTCAGGTAGGC
1 GGGTGTCAGGTAGGC
60881779 GG
1 GG
60881781 CACCAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.56, T:0.19
Consensus pattern (15 bp):
GGGTGTCAGGTAGGC
Done.