Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 199 of 438
Found at i:61665743 original size:16 final size:16
Alignment explanation
Indices: 61665719--61665751 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
61665709 TTGTAACGCC
*
61665719 CCAACAATCCCGAAAT
1 CCAAAAATCCCGAAAT
61665735 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
61665751 C
1 C
61665752 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.36, G:0.06, T:0.12
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:61667243 original size:28 final size:29
Alignment explanation
Indices: 61667212--61667266 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
61667202 GTGAGCATGA
*
61667212 ATAT-AATATGATTTGGGCCTAATGGGAC
1 ATATAAATATGAATTGGGCCTAATGGGAC
* *
61667240 ATATAAATGTGAATTGGGCCTAGTGGG
1 ATATAAATATGAATTGGGCCTAATGGG
61667267 CCAGAAGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATAAATATGAATTGGGCCTAATGGGAC
Found at i:61668360 original size:21 final size:19
Alignment explanation
Indices: 61668327--61668372 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
61668317 GTAACTGAAA
**
61668327 GGTTTTTTTTTTTAATTAG
1 GGTTTTTTTTTTTAAGAAG
61668346 GGTTTCTTTTATTTTAAGAAG
1 GGTTT-TTTT-TTTTAAGAAG
61668367 GGTTTT
1 GGTTTT
61668373 CAATGAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 5 0.22
21 13 0.57
ACGTcount: A:0.17, C:0.02, G:0.20, T:0.61
Consensus pattern (19 bp):
GGTTTTTTTTTTTAAGAAG
Found at i:61668957 original size:17 final size:19
Alignment explanation
Indices: 61668915--61668958 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
61668905 ATGAAATTTT
*
61668915 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
61668934 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
61668952 AA-TATTA
1 AATTATTA
61668959 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:61675571 original size:46 final size:47
Alignment explanation
Indices: 61675515--61675634 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 47
61675505 TATGTGTGCT
* * ** * *
61675515 AGTGTGAGACATGTCTGGGAGATGCATCTGCCA-CAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCTGAAATCAAGAAGAGAGCC
* * ** *
61675561 AGTGTAAGACATGTTTAGGACATGCAT-TGAAATTGAGAAGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCTGAAATCAAGAAGAGAGCC
61675607 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
61675635 AACCTCGCGA
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
45 3 0.05
46 56 0.95
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCTGAAATCAAGAAGAGAGCC
Found at i:61678052 original size:20 final size:21
Alignment explanation
Indices: 61678014--61678052 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
61678004 TTTTAATGGC
61678014 CACACGGGCGTGTTGCCCTTA
1 CACACGGGCGTGTTGCCCTTA
61678035 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
61678053 ACTACAAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.13, C:0.36, G:0.31, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTA
Found at i:61681284 original size:39 final size:39
Alignment explanation
Indices: 61681200--61681352 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
61681190 TATGGTAACC
** * *
61681200 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
61681240 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
61681279 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
61681318 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
61681353 TCGAACATTC
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:61681327 original size:78 final size:79
Alignment explanation
Indices: 61681169--61681351 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
61681159 TCGTTCAAAC
* * **
61681169 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
*
61681234 ACAATTTGCACAATT
65 ACAATTCGCACAATT
* ** * *
61681249 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
61681313 CAATTCGCACAATT
66 CAATTCGCACAATT
61681327 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
61681352 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 52 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTCGCACAATT
Found at i:61688156 original size:94 final size:94
Alignment explanation
Indices: 61687991--61688166 Score: 223
Period size: 94 Copynumber: 1.9 Consensus size: 94
61687981 ACATAGGGTG
* * *
61687991 CAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTACATCACGAGGCCGATACATGTC
1 CAATGCCGACGCCATGTCCTAGACATGATCTTACACTGGCTTACATCAAGAGGCCGATACATGTC
**
61688056 TTAGACATGTCTTACACCAGCTCTCGTCT
66 CCAGACATGTCTTACACCAGCTCTCGTCT
* ** *
61688085 CAATGCCGACGCCATGTCAC-AGACATGATCTTACACTGGCTCT-CAT-AATATGGTTGATGCAT
1 CAATGCCGACGCCATGTC-CTAGACATGATCTTACACTGGCT-TACATCAAGA-GGCCGATACAT
61688147 GTCCCAGACATGTCTTACAC
63 GTCCCAGACATGTCTTACAC
61688167 TAGCATACAA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
93 2 0.03
94 66 0.94
95 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (94 bp):
CAATGCCGACGCCATGTCCTAGACATGATCTTACACTGGCTTACATCAAGAGGCCGATACATGTC
CCAGACATGTCTTACACCAGCTCTCGTCT
Found at i:61693926 original size:39 final size:34
Alignment explanation
Indices: 61693832--61693934 Score: 197
Period size: 34 Copynumber: 3.0 Consensus size: 34
61693822 CGTGTAAAGT
61693832 CTGTACCTATTTTATGAAAATTAAATTACCCACA
1 CTGTACCTATTTTATGAAAATTAAATTACCCACA
61693866 CTGTACCTATTTTATGAAAATTAAATTACCCACA
1 CTGTACCTATTTTATGAAAATTAAATTACCCACA
*
61693900 TTGTACCTATTTTATGAAAATTAAATTACCCACA
1 CTGTACCTATTTTATGAAAATTAAATTACCCACA
61693934 C
1 C
61693935 AGCCTAGCAC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (34 bp):
CTGTACCTATTTTATGAAAATTAAATTACCCACA
Found at i:61697576 original size:33 final size:33
Alignment explanation
Indices: 61697539--61697604 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
61697529 CTCTAATCAT
*
61697539 TAAAGGACAATTCTTACATACTTTATCAACTAA
1 TAAAGGACAATTCTTACATACCTTATCAACTAA
61697572 TAAAGGACAATTCTTACATACCTTATCAACTAA
1 TAAAGGACAATTCTTACATACCTTATCAACTAA
61697605 CACATATTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.32
Consensus pattern (33 bp):
TAAAGGACAATTCTTACATACCTTATCAACTAA
Found at i:61699497 original size:20 final size:20
Alignment explanation
Indices: 61699472--61699519 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
61699462 GGTCACACAT
*
61699472 GCCCGTGTGGCTTGGGACAG
1 GCCCGTGTGGCTTGGGACAC
61699492 GCCCGTGTGGCTTGGGACAC
1 GCCCGTGTGGCTTGGGACAC
61699512 GCCCGTGT
1 GCCCGTGT
61699520 CCTTAGCCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.08, C:0.29, G:0.42, T:0.21
Consensus pattern (20 bp):
GCCCGTGTGGCTTGGGACAC
Found at i:61705993 original size:53 final size:54
Alignment explanation
Indices: 61705925--61706131 Score: 206
Period size: 53 Copynumber: 3.8 Consensus size: 54
61705915 TTCCTTTTTA
* * *
61705925 AACTTACCATTGCCATGCCTTGACATGGTCTTACGTCATATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
* * *
61705978 AACTCACCATTGCCATGCCTT-AGCTTGGTCTTACATGGA-A-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGA-CATGGTCTTACAT-GATATCC-TTGCCTTATAG
** * * * * *
61706032 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
* * *
61706087 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
61706132 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 23, Indels: 15
0.76 0.14 0.09
Matches are distributed among these distances:
52 3 0.02
53 41 0.33
54 40 0.33
55 36 0.29
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
Found at i:61711021 original size:57 final size:58
Alignment explanation
Indices: 61710947--61711111 Score: 201
Period size: 57 Copynumber: 2.9 Consensus size: 58
61710937 TACGGTGACG
* *
61710947 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAA
1 AGATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
* *
61711004 ATATATGGCAC-AAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
* * * * * **
61711061 GGGTATGGCACTATGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGCGA
1 AGATATGGCACTAAGTGTGCGTGCTGGAAAT-ATATGGCACTAAGTGTGCGA
61711112 AATCGAGTAT
Statistics
Matches: 92, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
57 58 0.63
58 34 0.37
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
Found at i:61711027 original size:28 final size:29
Alignment explanation
Indices: 61710951--61711110 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
61710941 GTGACGAGAT
61710951 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
61710980 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
61711009 TGGCAC-AAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
61711037 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
61711066 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
61711095 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61711111 AAATCGAGTA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
28 29 0.25
29 86 0.75
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:61711098 original size:86 final size:87
Alignment explanation
Indices: 61710951--61711109 Score: 205
Period size: 86 Copynumber: 1.8 Consensus size: 87
61710941 GTGACGAGAT
* * * * *
61710951 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC-
1 TGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTAAGTGTGCGGGCTGGAAATACATGGCACT
61711015 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCATGCTGGAAATATA
* * * * *
61711037 TGGCACTAAGTGTGCGAGCTCGAAGGGTATGGCACTATGTGTGCGGGCT-TAAATCGCATGGCAC
1 TGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTAAGTGTGCGGGCTGGAAAT-ACATGGCAC
61711101 TAAGTGTGC
65 TAAGTGTGC
61711110 GAAATCGAGT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 4 0.07
86 49 0.80
87 8 0.13
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTAAGTGTGCGGGCTGGAAATACATGGCACT
AAGTGTGCATGCTGGAAATATA
Found at i:61718491 original size:29 final size:29
Alignment explanation
Indices: 61718458--61718618 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
61718448 GTGACGAGAT
61718458 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
61718487 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
61718516 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
61718545 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
61718574 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
61718603 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61718619 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:61724224 original size:53 final size:54
Alignment explanation
Indices: 61724138--61724341 Score: 194
Period size: 53 Copynumber: 3.8 Consensus size: 54
61724128 TTCCTTTTTA
* * *
61724138 AACTTACCATTGCTATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG
** * * * *
61724191 AACTCGCCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG
** * ** * ** * * *
61724245 TAGTTTATCAATGCCATGTATTGACACGGTCTTACATAATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG
* *
61724300 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
61724342 CTTAAACCCT
Statistics
Matches: 115, Mismatches: 34, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
53 45 0.39
54 32 0.28
55 38 0.33
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATAG
Found at i:61729438 original size:53 final size:53
Alignment explanation
Indices: 61729375--61729481 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
61729365 TTCGGCAGGC
* *
61729375 ACAAGGAAGAAGATGGCTGATTTTATCTTTCTTTTTCCCTTTTTATTTCATTT
1 ACAAGGAAGAAGAAGGCTGATTTTAGCTTTCTTTTTCCCTTTTTATTTCATTT
61729428 ACAAGGAAGAAGAAGGCTGATTTTAGCTTTCTTTTTCCCTTTTTATTTCATTT
1 ACAAGGAAGAAGAAGGCTGATTTTAGCTTTCTTTTTCCCTTTTTATTTCATTT
61729481 A
1 A
61729482 TTACCAAATG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.24, C:0.15, G:0.14, T:0.47
Consensus pattern (53 bp):
ACAAGGAAGAAGAAGGCTGATTTTAGCTTTCTTTTTCCCTTTTTATTTCATTT
Found at i:61734251 original size:46 final size:46
Alignment explanation
Indices: 61734201--61734376 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
61734191 TGGTTGAGCA
61734201 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61734247 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61734292 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
61734340 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61734377 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61734357 original size:93 final size:93
Alignment explanation
Indices: 61734198--61734368 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
61734188 GGATGGTTGA
* *
61734198 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61734263 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61734291 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61734356 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
61734369 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61737309 original size:15 final size:15
Alignment explanation
Indices: 61737289--61737357 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
61737279 GTATCTTGGG
61737289 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
61737304 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
61737319 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
61737334 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
61737349 TTTCTTTAT
1 TTTCTTTAT
61737358 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:61737358 original size:30 final size:30
Alignment explanation
Indices: 61737280--61737367 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
61737270 CATAGTATCG
* * * *
61737280 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
61737310 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
61737340 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
61737368 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:61739781 original size:46 final size:46
Alignment explanation
Indices: 61739731--61739906 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
61739721 TGGTTGAGCA
61739731 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61739777 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61739822 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
61739870 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61739907 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61739887 original size:93 final size:93
Alignment explanation
Indices: 61739728--61739898 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
61739718 GGATGGTTGA
* *
61739728 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61739793 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61739821 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61739886 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
61739899 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61743342 original size:75 final size:74
Alignment explanation
Indices: 61743221--61743392 Score: 216
Period size: 75 Copynumber: 2.4 Consensus size: 74
61743211 TCCATGGCAA
** *
61743221 AGTGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTA
1 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-
*
61743281 T-CCATACTG
65 TCCCATACCG
61743290 AGCTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
1 AG-TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
61743355 TCCCATACCG
65 TCCCATACCG
*
61743365 AGT-TAAAAATGTAGGTATGGTATT-TCAA
1 AGTGT-GAAATGTAGGTATGGTATTATCAA
61743393 TGAGGAAAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
69 2 0.02
70 18 0.20
73 9 0.10
74 20 0.22
75 41 0.46
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (74 bp):
AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
CCCATACCG
Found at i:61743361 original size:35 final size:35
Alignment explanation
Indices: 61743226--61743390 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
61743216 GGCAAAGTGT
* **
61743226 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
61743261 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
61743296 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
61743336 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
61743371 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
61743391 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
34 19 0.16
35 66 0.57
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:61747118 original size:16 final size:16
Alignment explanation
Indices: 61747097--61747128 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
61747087 AAGTTTAGGG
61747097 GCAAAAATATAATTTT
1 GCAAAAATATAATTTT
*
61747113 GCAAAAATATGATTTT
1 GCAAAAATATAATTTT
61747129 TGGGTCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (16 bp):
GCAAAAATATAATTTT
Found at i:61747901 original size:56 final size:56
Alignment explanation
Indices: 61747814--61747928 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
61747804 TTTAGCCTGG
61747814 ACTGGTAATCCCGCTGTAAGATGCAACGTTCACGAGAGTGCGTACTTGAAATGATC
1 ACTGGTAATCCCGCTGTAAGATGCAACGTTCACGAGAGTGCGTACTTGAAATGATC
*
61747870 ACTGGTAATCCCGCTGTAAGATGCAAGGTTCACGAGAGTGCGTACTTGAAATGATC
1 ACTGGTAATCCCGCTGTAAGATGCAACGTTCACGAGAGTGCGTACTTGAAATGATC
61747926 ACT
1 ACT
61747929 TGTACCATTT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (56 bp):
ACTGGTAATCCCGCTGTAAGATGCAACGTTCACGAGAGTGCGTACTTGAAATGATC
Found at i:61751673 original size:15 final size:15
Alignment explanation
Indices: 61751655--61751694 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
61751645 TTTTCTTGTT
*
61751655 TTGGATTTCTTTATG
1 TTGGATTTCTATATG
* *
61751670 TTGGATTTATATATT
1 TTGGATTTCTATATG
61751685 TTGGATTTCT
1 TTGGATTTCT
61751695 CCATTATGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.17, C:0.05, G:0.17, T:0.60
Consensus pattern (15 bp):
TTGGATTTCTATATG
Found at i:61755170 original size:19 final size:19
Alignment explanation
Indices: 61755146--61755183 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
61755136 GGGTCAAAAT
61755146 GTAAATTTGCAAAAATATG
1 GTAAATTTGCAAAAATATG
61755165 GTAAATTTGCAAAAATATG
1 GTAAATTTGCAAAAATATG
61755184 ATTTATGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.16, T:0.32
Consensus pattern (19 bp):
GTAAATTTGCAAAAATATG
Found at i:61755645 original size:42 final size:43
Alignment explanation
Indices: 61755582--61755693 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
61755572 GAAGTCTGAA
* * *
61755582 CTCGTTGAGTGGTCCGGGTTCATGA-G-GTATGTAGCATCCGAG
1 CTCGTTGAGTGGTCCGAGTTCATGATGAATACG-AGCATCCGAG
* * * *
61755624 CTCGTTGAGAGGTCTGAGTTCATTATGAATACGAGCATCTGAG
1 CTCGTTGAGTGGTCCGAGTTCATGATGAATACGAGCATCCGAG
61755667 CTCGTTGAGTGGTCCGAGTTCATGATG
1 CTCGTTGAGTGGTCCGAGTTCATGATG
61755694 GATGCTATTC
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 21 0.36
43 34 0.59
44 3 0.05
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (43 bp):
CTCGTTGAGTGGTCCGAGTTCATGATGAATACGAGCATCCGAG
Found at i:61757091 original size:29 final size:27
Alignment explanation
Indices: 61757037--61757096 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 27
61757027 TTGGACACGG
*
61757037 GTGAGGACACGGGCATGTCTAGGCCGT
1 GTGAGGACACAGGCATGTCTAGGCCGT
* *
61757064 GTGAGAGACACAGGCGTGTGCTCGGCCGT
1 GTGAG-GACACAGGCATGT-CTAGGCCGT
61757093 GTGA
1 GTGA
61757097 CAACCCCTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.18
28 11 0.39
29 12 0.43
ACGTcount: A:0.18, C:0.22, G:0.42, T:0.18
Consensus pattern (27 bp):
GTGAGGACACAGGCATGTCTAGGCCGT
Found at i:61759890 original size:40 final size:40
Alignment explanation
Indices: 61759842--61760073 Score: 326
Period size: 40 Copynumber: 5.8 Consensus size: 40
61759832 ATAACAACTC
*
61759842 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
*
61759882 GCATAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACT-A
* *
61759923 -CACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
61759962 GCATAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
61760002 GCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
61760042 GCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
61760074 CATTCGAATA
Statistics
Matches: 169, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 3 0.02
40 163 0.96
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:61759959 original size:80 final size:80
Alignment explanation
Indices: 61759822--61760073 Score: 425
Period size: 80 Copynumber: 3.2 Consensus size: 80
61759812 TCTTCAGGAT
* * * *
61759822 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGTCACTAGCAT
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCAT
61759886 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
61759901 TTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCAT
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCAT
61759966 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
61759981 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCAC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCAT
* *
61760046 AAAAGCCTTCGGGAC
66 AAATGCCTTCGGGTC
61760061 TTAGCCCGGATAT
1 TTAGCCCGGATAT
61760074 CATTCGAATA
Statistics
Matches: 163, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 4 0.02
80 159 0.98
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCAT
AAATGCCTTCGGGTC
Found at i:61760047 original size:120 final size:120
Alignment explanation
Indices: 61759813--61760073 Score: 329
Period size: 120 Copynumber: 2.2 Consensus size: 120
61759803 ACCCAAGTAT
*
61759813 CTTCAGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGT
1 CTTCAGGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGT
* * *
61759877 CACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
66 CACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGCAACTCACACAAAAGC
* * *
61759932 CTTC-GGATCTTAGTCCGGATATAGTC-ACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CTTCAGGATCTTAG-CCGGATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGCCCAGATATA
* *
61759995 G-CAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTC-ACT-AGCACAAAAGC
64 GTC-ACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAG-CAACTCA-CACAAAAGC
*
61760052 CTTCGGGA-CTTAGCCCGGATAT
1 CTTCAGGATCTTAG-CCGGATAT
61760074 CATTCGAATA
Statistics
Matches: 125, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
118 4 0.03
119 10 0.08
120 106 0.85
121 5 0.04
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (120 bp):
CTTCAGGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGT
CACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGCAACTCACACAAAAGC
Found at i:61768217 original size:32 final size:32
Alignment explanation
Indices: 61768181--61768285 Score: 104
Period size: 32 Copynumber: 3.1 Consensus size: 32
61768171 TAGCATAAAT
61768181 GCCTTCGGGTCTTAGCCCGGATATAGCAACTC
1 GCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
61768213 GCCTTCGGATCTTAGTCC-GATATAGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-CA--A-C-T---C
61768252 GCCTTCGGGTCTTAGCCCGGATATAGCAACTC
1 GCCTTCGGGTCTTAGCCCGGATATAGCAACTC
61768284 GC
1 GC
61768286 ACAAATGCCT
Statistics
Matches: 58, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
31 7 0.12
32 20 0.34
34 1 0.02
35 2 0.03
36 2 0.03
37 1 0.02
39 18 0.31
40 7 0.12
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (32 bp):
GCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:61768258 original size:71 final size:73
Alignment explanation
Indices: 61768142--61768355 Score: 306
Period size: 71 Copynumber: 2.9 Consensus size: 73
61768132 TCGCACAAAT
* *
61768142 GCCTTCGGGTCTTAGCCCGATATAGTCACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 GCCTTCGGATCTTAGTCCGATATAGTCACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAG
61768207 CAACT-C-
66 CAACTCCA
61768213 GCCTTCGGATCTTAGTCCGATATAGTCACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 GCCTTCGGATCTTAGTCCGATATAGTCACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAG
61768278 CAACTCGCACAAA
66 CAACT--C-C--A
* * *
61768291 TGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 -GCCTTCGGATCTTAGTCC-GATATAGTCACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATAT
61768356 CATTCGAATA
Statistics
Matches: 129, Mismatches: 5, Indels: 9
0.90 0.03 0.06
Matches are distributed among these distances:
71 68 0.53
75 1 0.01
79 18 0.14
80 42 0.33
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (73 bp):
GCCTTCGGATCTTAGTCCGATATAGTCACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAG
CAACTCCA
Found at i:61768275 original size:40 final size:40
Alignment explanation
Indices: 61768213--61768355 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
61768203 ATAGCAACTC
* *
61768213 GCCTTCGGATCTTAGTCC-GATATAGTCACTAGCATAAAT
1 GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
61768252 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGATCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* *
61768292 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAA
1 GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAT
61768332 GCCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTC-GGATCTTAGCCCGGATAT
61768356 CATTCGAATA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
39 17 0.19
40 70 0.77
41 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:61776922 original size:2 final size:2
Alignment explanation
Indices: 61776915--61776954 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
61776905 CTCCTTCCAC
* *
61776915 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61776955 GGAGTAATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
AT
Found at i:61780831 original size:14 final size:14
Alignment explanation
Indices: 61780812--61780849 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
61780802 ATTACGTTTC
61780812 ATTATTTATTATAT
1 ATTATTTATTATAT
61780826 ATTATTTTAATTATAT
1 ATTA-TTT-ATTATAT
61780842 A-TATTTAT
1 ATTATTTAT
61780850 ATTTCAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.09
14 7 0.32
15 5 0.23
16 8 0.36
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
ATTATTTATTATAT
Found at i:61781386 original size:30 final size:30
Alignment explanation
Indices: 61781345--61781416 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
61781335 TTTTAATAGT
61781345 TTATATTTTTATAATTTTTAAA-GAATTAAA
1 TTATATTTTTATAA-TTTTAAAGGAATTAAA
* *
61781375 TTATTTTTTTATAATTTTAAAGGAGTTAAA
1 TTATATTTTTATAATTTTAAAGGAATTAAA
*
61781405 TTATAATTTTAT
1 TTATATTTTTAT
61781417 TTTTATTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 7 0.19
30 30 0.81
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (30 bp):
TTATATTTTTATAATTTTAAAGGAATTAAA
Found at i:61781741 original size:18 final size:20
Alignment explanation
Indices: 61781704--61781743 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
61781694 AAATATTTGT
61781704 TTTTTAATTTAATATTAATA
1 TTTTTAATTTAATATTAATA
*
61781724 TTTTT-ATTTTAT-TTAATA
1 TTTTTAATTTAATATTAATA
61781742 TT
1 TT
61781744 AATGTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 6 0.32
20 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTAATTTAATATTAATA
Found at i:61781742 original size:24 final size:24
Alignment explanation
Indices: 61781695--61781764 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
61781685 AAAGGGAGGA
61781695 AATATTTGTT-TTTTAATTTAATATT
1 AATATTT-TTATTTT-ATTTAATATT
61781720 AATATTTTTATTTTATTTAATATT
1 AATATTTTTATTTTATTTAATATT
* **
61781744 AATGTTAATATTTTATTTAAT
1 AATATTTTTATTTTATTTAAT
61781765 CAAATTTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 30 0.73
25 11 0.27
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (24 bp):
AATATTTTTATTTTATTTAATATT
Found at i:61781752 original size:30 final size:28
Alignment explanation
Indices: 61781706--61781761 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
61781696 ATATTTGTTT
61781706 TTTAATTTAATATTAATATTTTTATTTTA
1 TTTAATTTAATATTAATA-TTTTATTTTA
*
61781735 TTTAATATTAATGTTAATATTTTATTT
1 TTTAAT-TTAATATTAATATTTTATTT
61781762 AATCAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (28 bp):
TTTAATTTAATATTAATATTTTATTTTA
Found at i:61783586 original size:66 final size:66
Alignment explanation
Indices: 61783480--61783612 Score: 203
Period size: 66 Copynumber: 2.0 Consensus size: 66
61783470 TGAAATGGTT
* * * *
61783480 TCAATTTAGTACTTTTTGTCTAAGTATTGATATTTTACAAGATATCAATAATCCTCTGATAATCG
1 TCAATTAAGTAATTTTTGTCTAAGTATCGATATTTTACAAGATATCAATAATCCTCTAATAATCG
61783545 A
66 A
** *
61783546 TCAATTAAGTAATTTTTGTCTAAGTATCGATATTTTACAAGATATTGATAATCCTTTAATAATCG
1 TCAATTAAGTAATTTTTGTCTAAGTATCGATATTTTACAAGATATCAATAATCCTCTAATAATCG
61783611 A
66 A
61783612 T
1 T
61783613 ACCAAATTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.43
Consensus pattern (66 bp):
TCAATTAAGTAATTTTTGTCTAAGTATCGATATTTTACAAGATATCAATAATCCTCTAATAATCG
A
Found at i:61792033 original size:24 final size:24
Alignment explanation
Indices: 61792006--61792057 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
61791996 TGGAAGGTAT
*
61792006 GTATATATGTGTTTATGTGTATAA
1 GTATATATGTGTTCATGTGTATAA
* *
61792030 GTATGTATGTGTTCATGTGTATAT
1 GTATATATGTGTTCATGTGTATAA
61792054 GTAT
1 GTAT
61792058 TTGAAGGTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.02, G:0.23, T:0.50
Consensus pattern (24 bp):
GTATATATGTGTTCATGTGTATAA
Found at i:61809105 original size:40 final size:40
Alignment explanation
Indices: 61809060--61809227 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61809050 CGGAATATAA
61809060 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61809100 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61809140 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
61809180 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61809220 CCGGATAT
1 CCGGATAT
61809228 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61817124 original size:40 final size:40
Alignment explanation
Indices: 61817079--61817246 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61817069 CGGAATATAA
61817079 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61817119 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61817159 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
61817199 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61817239 CCGGATAT
1 CCGGATAT
61817247 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61820294 original size:42 final size:43
Alignment explanation
Indices: 61820239--61820357 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
61820229 CATCGAATTG
61820239 TGATTTACGTGTAAGACCATGTCTGGGACATTGGAATCG-TATA
1 TGATTT-CGTGTAAGACCATGTCTGGGACATTGGAATCGATATA
* * * * *
61820282 TGATTTCGTGTAAGACCTTGTCTGGGATAGTGGAATCGATTTT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGAATCGATATA
* * ** *
61820325 TGATTACATGTAAGACCACATCTGGGACGTTGG
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGG
61820358 CATTGTATGA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 29 0.47
43 33 0.53
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGAATCGATATA
Found at i:61822067 original size:24 final size:24
Alignment explanation
Indices: 61822033--61822103 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
61822023 CATAACACAC
61822033 ACCCATGGGCGTGAGCCGTGTGTG
1 ACCCATGGGCGTGAGCCGTGTGTG
*
61822057 ACCCATCGGCGTGAGCCGTGTGTG
1 ACCCATGGGCGTGAGCCGTGTGTG
61822081 ACCCATGGGCGTGAGCCGTGTGT
1 ACCCATGGGCGTGAGCCGTGTGT
61822104 CACACACGGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.13, C:0.27, G:0.39, T:0.21
Consensus pattern (24 bp):
ACCCATGGGCGTGAGCCGTGTGTG
Found at i:61822968 original size:47 final size:44
Alignment explanation
Indices: 61822854--61823115 Score: 120
Period size: 47 Copynumber: 5.7 Consensus size: 44
61822844 TATGCGTGTT
* **
61822854 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCCGAGCC
* * ** * *
61822898 GATGCGTGTCCTAGACACATCTTACACTGGTTATC-TCTGCCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGG-CA-CAACT-CCGA-GCC
* * ** *
61822945 GATGCATGTCCCAGACATGTCTTACTCTGGCACTCATAATATG-GCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCA--CA-ACTCCGAGCC
* * * ** *
61822991 GAAGCATGTCCCAGGCATGTCTTACACTAGC-CCTCGTCTGGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAAC-TC-CGA-GCC
* * * *
61823037 AATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAT--GTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGG--CACA-ACTCCG-AGCC
*
61823085 GAAGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
61823116 GCACAAATCA
Statistics
Matches: 159, Mismatches: 41, Indels: 36
0.67 0.17 0.15
Matches are distributed among these distances:
43 2 0.01
44 27 0.17
45 3 0.02
46 48 0.30
47 57 0.36
48 17 0.11
49 2 0.01
50 1 0.01
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCCGAGCC
Found at i:61823004 original size:46 final size:44
Alignment explanation
Indices: 61822948--61823115 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 44
61822938 CGAGGCCGAT
*
61822948 GCATGTCCCAGACATGTCTTACTCTGGCACTCATAATATGGCTGAA
1 GCATGTCCCAGACATGTCTTACACTGGCACTCATAATAT-GC-GAA
* * * * * *
61822994 GCATGTCCCAGGCATGTCTTACACTAGCCCTCGT-CTGGATGCCAA
1 GCATGTCCCAGACATGTCTTACACTGGCACTCATAAT--ATGCGAA
* * *
61823039 TGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTAGCCGAA
1 -G-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATAT-G-CGAA
61823088 GCATGTCCCAGACATGTCTTACACTGGC
1 GCATGTCCCAGACATGTCTTACACTGGC
61823116 GCACAAATCA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
45 3 0.03
46 44 0.45
47 30 0.31
48 17 0.17
49 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTGGCACTCATAATATGCGAA
Found at i:61830414 original size:21 final size:21
Alignment explanation
Indices: 61830390--61830429 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
61830380 CACCTTGCGC
*
61830390 GAAGAATTTCTTCATGAAATT
1 GAAGAATTTATTCATGAAATT
61830411 GAAGAATTTATTCATGAAA
1 GAAGAATTTATTCATGAAA
61830430 CTTTAACACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.35
Consensus pattern (21 bp):
GAAGAATTTATTCATGAAATT
Found at i:61838342 original size:42 final size:43
Alignment explanation
Indices: 61838273--61838354 Score: 123
Period size: 42 Copynumber: 1.9 Consensus size: 43
61838263 TCTTACATGT
*
61838273 AATCAAATGTCGATGCCACTGTCCTAGACAAGGTCTTACAAAA
1 AATCAAATGACGATGCCACTGTCCTAGACAAGGTCTTACAAAA
*
61838316 AATCAAAT-ACGATGCCGA-TGTCCTAGACATGGTCTTACA
1 AATCAAATGACGATGCC-ACTGTCCTAGACAAGGTCTTACA
61838355 TATAAATCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 27 0.75
43 9 0.25
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.24
Consensus pattern (43 bp):
AATCAAATGACGATGCCACTGTCCTAGACAAGGTCTTACAAAA
Found at i:61838362 original size:43 final size:42
Alignment explanation
Indices: 61838250--61838410 Score: 132
Period size: 43 Copynumber: 3.8 Consensus size: 42
61838240 ACATGGCAAC
* * * *
61838250 GTCCAAGACGTGGTCTTACATGT-AATCAAATGTCGATGCCACT
1 GTCCTAGACATGGTCTTACATATAAATCAAAT-ACGATGCCA-T
* *
61838293 GTCCTAGACAAGGTCTTACA-AAAAATCAAATACGATGCCGAT
1 GTCCTAGACATGGTCTTACATATAAATCAAATACGATGCC-AT
* *
61838335 GTCCTAGACATGGTCTTACATATAAATCTCAAAT-CAATGCCAAC
1 GTCCTAGACATGGTCTTACATATAAA--TCAAATACGATGCC-AT
** * *
61838379 GTCCTAGATGTGGTCATACAT-GAAATCAAATA
1 GTCCTAGACATGGTCTTACATATAAATCAAATA
61838411 TCGAACATCC
Statistics
Matches: 97, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
41 6 0.06
42 27 0.28
43 33 0.34
44 25 0.26
45 6 0.06
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (42 bp):
GTCCTAGACATGGTCTTACATATAAATCAAATACGATGCCAT
Found at i:61839501 original size:13 final size:13
Alignment explanation
Indices: 61839483--61839519 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
61839473 ACAAATGATC
*
61839483 AAATTTTCACATG
1 AAATTTTCACACG
61839496 AAATTTTCACACG
1 AAATTTTCACACG
*
61839509 AAACTTTCACA
1 AAATTTTCACA
61839520 AATATCAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:61844442 original size:40 final size:39
Alignment explanation
Indices: 61844397--61844526 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
61844387 CGGAATACAA
61844397 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
61844437 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * ** *
61844477 CCGGATGTAGCTGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
61844517 CCGGATATAA
1 CCGGATATAA
61844527 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:61844547 original size:40 final size:40
Alignment explanation
Indices: 61844413--61844564 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 40
61844403 ATAACCACGT
* * **
61844413 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAC-GACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACTG-CCA
* * * *
61844453 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCTGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACTGCCA
* * * *
61844493 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACTGCCA
* * *
61844533 GCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
61844565 CATTCAATTG
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 93 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACTGCCA
Found at i:61852382 original size:40 final size:39
Alignment explanation
Indices: 61852337--61852466 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
61852327 CGGAATACAA
61852337 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
61852377 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
61852417 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
61852457 CCGGATATAA
1 CCGGATATAA
61852467 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:61859798 original size:48 final size:48
Alignment explanation
Indices: 61859741--61859842 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
61859731 CACATGGTAG
* * * *
61859741 GATGCCAATGCCATATCTCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATC
*
61859789 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATC
*
61859837 AATGCC
1 GATGCC
61859843 GATAGTCCAG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATC
Found at i:61859861 original size:43 final size:47
Alignment explanation
Indices: 61859763--61859865 Score: 126
Period size: 48 Copynumber: 2.3 Consensus size: 47
61859753 ATATCTCGGA
* *
61859763 TATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
1 TATGGTCTTACATAGGATCACATATCAATGCCAAT--CATGTCCCAGAC
*
61859812 -ATGGTCTTACATAGGATCACATATCAATGCCGAT-A-GT-CCAG-C
1 TATGGTCTTACATAGGATCACATATCAATGCCAATCATGTCCCAGAC
61859854 TATGGTCTTACA
1 TATGGTCTTACA
61859866 CGAAATTACA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
42 1 0.02
43 15 0.30
44 2 0.04
45 1 0.02
48 31 0.62
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (47 bp):
TATGGTCTTACATAGGATCACATATCAATGCCAATCATGTCCCAGAC
Found at i:61865930 original size:32 final size:31
Alignment explanation
Indices: 61865888--61865948 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
61865878 ATATTTTTGC
* *
61865888 CTTAACTTGAAAATGATTTTTATATAAGGGAG
1 CTTAAATTGAAAATGACTTTTAT-TAAGGGAG
61865920 CTTAAATTGAAAATGACTTTTATTAAGGG
1 CTTAAATTGAAAATGACTTTTATTAAGGG
61865949 GGAGCAATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 6 0.22
32 21 0.78
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (31 bp):
CTTAAATTGAAAATGACTTTTATTAAGGGAG
Found at i:61873329 original size:29 final size:29
Alignment explanation
Indices: 61873297--61873391 Score: 145
Period size: 29 Copynumber: 3.3 Consensus size: 29
61873287 CTTCGAGCTC
* * *
61873297 GCACACTCAGTACCGTATATTTCTAGCAT
1 GCACACTTAGTACCATATATTTCCAGCAT
*
61873326 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTACCATATATTTCCAGCAT
*
61873355 GCACACTTAGTTCCATATATTTCCAGCAT
1 GCACACTTAGTACCATATATTTCCAGCAT
61873384 GCACACTT
1 GCACACTT
61873392 GTGCCAATCT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.32
Consensus pattern (29 bp):
GCACACTTAGTACCATATATTTCCAGCAT
Found at i:61873330 original size:58 final size:58
Alignment explanation
Indices: 61873268--61873397 Score: 138
Period size: 58 Copynumber: 2.3 Consensus size: 58
61873258 ATTTAAGCCC
* * * * *
61873268 GCACACATAGTGCTATACCCTTCGAGC-TCGCACACTCAGTACCGTATATTTCTAGCAT
1 GCACACATAGTGCCATACACTTCCAGCAT-GCACACTCAGTACCATATATTTCCAGCAT
* * * * *
61873326 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTTCCATATATTTCCAGCAT
1 GCACACATAGTGCCATACACTTCCAGCATGCACACTCAGTACCATATATTTCCAGCAT
*
61873384 GCACAC-TTGTGCCA
1 GCACACATAGTGCCA
61873398 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
57 7 0.12
58 52 0.87
59 1 0.02
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (58 bp):
GCACACATAGTGCCATACACTTCCAGCATGCACACTCAGTACCATATATTTCCAGCAT
Found at i:61888361 original size:40 final size:40
Alignment explanation
Indices: 61888316--61888482 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
61888306 CGGAATATAA
61888316 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
61888356 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61888396 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61888436 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61888475 CCGGATAT
1 CCGGATAT
61888483 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61888466 original size:80 final size:79
Alignment explanation
Indices: 61888332--61888482 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
61888322 ATAATCACGT
*
61888332 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
61888397 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
61888412 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
61888475 CCGGATAT
64 CCGGATAT
61888483 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:61890789 original size:29 final size:29
Alignment explanation
Indices: 61890747--61890842 Score: 111
Period size: 29 Copynumber: 3.3 Consensus size: 29
61890737 GGCCCCATCT
61890747 CATTCATATGGCCCATCAAGCCCAATTCA
1 CATTCATATGGCCCATCAAGCCCAATTCA
* * * * *
61890776 CATTCTTATAGCCCAACAGGCCCATTTCA
1 CATTCATATGGCCCATCAAGCCCAATTCA
* * *
61890805 TATTCATATGGCCCATTAAGCCCAAATCA
1 CATTCATATGGCCCATCAAGCCCAATTCA
*
61890834 CATACATAT
1 CATTCATAT
61890843 TCATGCTCGC
Statistics
Matches: 52, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.32, C:0.31, G:0.09, T:0.27
Consensus pattern (29 bp):
CATTCATATGGCCCATCAAGCCCAATTCA
Found at i:61895174 original size:38 final size:37
Alignment explanation
Indices: 61895125--61895232 Score: 137
Period size: 38 Copynumber: 2.8 Consensus size: 37
61895115 TAATCACAGT
*
61895125 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AATCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCAA-CTA
*
61895163 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA-TAGCAACTA
*
61895202 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
61895233 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
38 32 0.51
39 30 0.48
40 1 0.02
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGCAACTA
Found at i:61895229 original size:39 final size:38
Alignment explanation
Indices: 61895125--61895231 Score: 137
Period size: 39 Copynumber: 2.8 Consensus size: 38
61895115 TAATCACAGT
*
61895125 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAGAATCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTAGAATCTA
*
61895163 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGCCA-CTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTAG-AATCTA
*
61895202 GCACAATTGCCTTCGGGTCTTAACCCGGAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGAT
61895232 ATAATTTCCA
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
38 30 0.48
39 31 0.50
40 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATTAGAATCTA
Found at i:61903128 original size:39 final size:40
Alignment explanation
Indices: 61903084--61903286 Score: 287
Period size: 39 Copynumber: 5.2 Consensus size: 40
61903074 TCGGATTTAA
* * *
61903084 CCGGATATAGCGACTCGCAC-ATATGCCTTCGGGTCATA-C
1 CCGGATATATCAACTCGCACGA-ATGCCTTCGGGTCTTAGC
* * *
61903123 CCGGATTTGT-AACT-GCAC-AAAGCCTTCGGG-CTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61903159 CCGGATATATCAACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61903198 CCGGATATATCAACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61903237 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61903277 CCGGATATAT
1 CCGGATATAT
61903287 TCAATACATC
Statistics
Matches: 149, Mismatches: 9, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
35 3 0.02
36 19 0.13
37 9 0.06
38 9 0.06
39 90 0.60
40 19 0.13
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:61905462 original size:40 final size:40
Alignment explanation
Indices: 61905354--61905561 Score: 301
Period size: 40 Copynumber: 5.2 Consensus size: 40
61905344 CGGGATTTAA
* * * * *
61905354 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
61905394 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61905434 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61905474 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61905514 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61905554 CCGGATAT
1 CCGGATAT
61905562 GCTTCGGGTC
Statistics
Matches: 151, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 150 0.99
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:61905582 original size:22 final size:23
Alignment explanation
Indices: 61905540--61905583 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
61905530 GCACGAATGC
61905540 CTTCGGGTCTTAGCCCGGATATG
1 CTTCGGGTCTTAGCCCGGATATG
61905563 CTTCGGGTCTTAG-CCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
61905584 ATTTCCAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.14, C:0.25, G:0.30, T:0.32
Consensus pattern (23 bp):
CTTCGGGTCTTAGCCCGGATATG
Found at i:61913616 original size:40 final size:40
Alignment explanation
Indices: 61913508--61913757 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
61913498 CGGGATTTAA
* * * * *
61913508 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
61913548 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61913588 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61913628 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61913668 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61913708 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61913748 CCGGATATAT
1 CCGGATATAT
61913758 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:61916069 original size:41 final size:41
Alignment explanation
Indices: 61916024--61916154 Score: 106
Period size: 41 Copynumber: 3.1 Consensus size: 41
61916014 GCATTTCGCC
61916024 TGCTAGGCTCGGAGCCCGATAATATTCACTAGCTTAAAGCT
1 TGCTAGGCTCGGAGCCCGATAATATTCACTAGCTTAAAGCT
* *** * * * *
61916065 TGCTAGACCTTTAAGTCCGAT-ATCATTTCA-TCGACATT-ACGCC
1 TGCTAG-GCTCGGAGCCCGATAAT-A-TTCACTAG-C-TTAAAGCT
* *
61916108 TGCTAGGCTCGGAGCCCCATAATATTCACCAGCTTAAAGCT
1 TGCTAGGCTCGGAGCCCGATAATATTCACTAGCTTAAAGCT
61916149 TGCTAG
1 TGCTAG
61916155 ACCTTTAAGT
Statistics
Matches: 64, Mismatches: 18, Indels: 16
0.65 0.18 0.16
Matches are distributed among these distances:
40 2 0.03
41 22 0.34
42 22 0.34
43 16 0.25
44 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (41 bp):
TGCTAGGCTCGGAGCCCGATAATATTCACTAGCTTAAAGCT
Found at i:61916113 original size:43 final size:42
Alignment explanation
Indices: 61915978--61916197 Score: 105
Period size: 42 Copynumber: 5.2 Consensus size: 42
61915968 CTGGCAATAA
* * *
61915978 GCCTACTAGACCTTTAAGTCCGATATCATTTCACCGGCATTTC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCA-CGACATTAC
* *** * * *
61916021 GCCTGCTAG-GCTCGGAGCCCGATA--ATATTCACTAGC-TTAAA
1 GCCTGCTAGACCTTTAAGTCCGATATCAT-TTCACGA-CATT-AC
*
61916062 GCTTGCTAGACCTTTAAGTCCGATATCATTTCATCGACATTAC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCA-CGACATTAC
* *** * * * *
61916105 GCCTGCTAG-GCTCGGAGCCCCATA--ATATTCACCAGC-TTAAA
1 GCCTGCTAGACCTTTAAGTCCGATATCAT-TTCACGA-CATT-AC
* * *
61916146 GCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCA-CGACATTAC
61916189 GCCTGCTAG
1 GCCTGCTAG
61916198 GCTCAAAGCC
Statistics
Matches: 122, Mismatches: 39, Indels: 32
0.63 0.20 0.17
Matches are distributed among these distances:
40 11 0.09
41 27 0.22
42 37 0.30
43 36 0.30
44 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (42 bp):
GCCTGCTAGACCTTTAAGTCCGATATCATTTCACGACATTAC
Found at i:61916221 original size:84 final size:84
Alignment explanation
Indices: 61915983--61916210 Score: 384
Period size: 84 Copynumber: 2.7 Consensus size: 84
61915973 AATAAGCCTA
*
61915983 CTAGACCTTTAAGTCCGATATCATTTCACCGGCATTTCGCCTGCTAGGCTCGGAGCCCGATAATA
1 CTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATA
*
61916048 TTCACTAGCTTAAAGCTTG
66 TTCACCAGCTTAAAGCTTG
* * *
61916067 CTAGACCTTTAAGTCCGATATCATTTCATCGACATTACGCCTGCTAGGCTCGGAGCCCCATAATA
1 CTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATA
61916132 TTCACCAGCTTAAAGCTTG
66 TTCACCAGCTTAAAGCTTG
* **
61916151 CTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAAAGCCCGA
1 CTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGA
61916211 AATTCATCAC
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 133 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (84 bp):
CTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATA
TTCACCAGCTTAAAGCTTG
Found at i:61918114 original size:14 final size:15
Alignment explanation
Indices: 61918085--61918114 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61918075 CAAAATTAAG
61918085 ACATGATACTTTCAC
1 ACATGATACTTTCAC
61918100 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
61918114 A
1 A
61918115 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:61927779 original size:20 final size:20
Alignment explanation
Indices: 61927754--61927796 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
61927744 AACTCCTATT
61927754 CCATCCCTCTACTATAAATA
1 CCATCCCTCTACTATAAATA
61927774 CCATCCCTCTACTATAAATA
1 CCATCCCTCTACTATAAATA
61927794 CCA
1 CCA
61927797 AATGTAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (20 bp):
CCATCCCTCTACTATAAATA
Found at i:61930053 original size:45 final size:44
Alignment explanation
Indices: 61929988--61930332 Score: 228
Period size: 45 Copynumber: 7.7 Consensus size: 44
61929978 GATTGGAGAG
* *
61929988 TGCCATGGTGTCTTTCAACCATGGTCTTATTTATTCTCATCTTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTTATT-TCATCGTGA
* * * *
61930033 CGCCATACTGTCTTTCAACCATGGTCTTATTTATTTTCTGTCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTTA-TTTC-ATCGTGA
* * * *
61930079 TGCCATAGTGTCTTTTAACTATGGTCTTATTTCTTTGATTCGTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTTATTTCA-TCGTGA
* * ** *** *
61930124 TGCCATAGTGTCTTTCAGCTATGGTCTTACTCGATAGAATCATGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTA-TTTATTTCATCGTGA
*** * * * * * *
61930169 TGCCATAACATCTTTTAGCCATGGTCTTACTTGTTTC-TGGTATGG
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTTATTTCATCG--TGA
* * * *
61930214 TGCCATAGTGTCTTTCAACTATGGTCTTATTTATTT-TTGGTATA
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTTATTTCATCGT-GA
** * * *
61930258 GTGCCATAGTGTCTTTCAACTGTGGTCTTATTTATTT-TTGGTATA
1 -TGCCATAGTGTCTTTCAACCATGGTCTTATTTATTTCATCGT-GA
**
61930303 GTGCCATAGTGTCTTTCAACTGTGGTCTTA
1 -TGCCATAGTGTCTTTCAACCATGGTCTTA
61930333 ATCATTTCCT
Statistics
Matches: 242, Mismatches: 49, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
43 2 0.01
44 1 0.00
45 202 0.83
46 37 0.15
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.45
Consensus pattern (44 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTATTTATTTCATCGTGA
Found at i:61931255 original size:20 final size:20
Alignment explanation
Indices: 61931196--61931265 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
61931186 AGAGCCACAC
*
61931196 GCCCGCGTGGCTTGGGACACT
1 GCCCGTGTGGCTTGGGACA-T
61931217 -CCCGTGTGGCTTGGGACAT
1 GCCCGTGTGGCTTGGGACAT
*
61931236 GCCTGTGTGGCTTGGGACAT
1 GCCCGTGTGGCTTGGGACAT
*
61931256 GCCCATGTGG
1 GCCCGTGTGG
61931266 GCAGGCCGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
19 1 0.02
20 43 0.98
ACGTcount: A:0.10, C:0.27, G:0.39, T:0.24
Consensus pattern (20 bp):
GCCCGTGTGGCTTGGGACAT
Found at i:61934151 original size:29 final size:29
Alignment explanation
Indices: 61934106--61934212 Score: 89
Period size: 29 Copynumber: 3.8 Consensus size: 29
61934096 TACGGTGACG
*
61934106 AGAT-TGGCAC-AAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCGA-GCTCGAA
*
61934133 ATATATGGCACTAAGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCGAGCTCGAA
* * * *
61934162 AGGTATGGCACTATGTGTGCGGGCT-TAA
1 AGATATGGCACTAAGTGTGCGAGCTCGAA
*
61934190 ATCG-CATGGCACTAAGTGTGCGA
1 A--GATATGGCACTAAGTGTGCGA
61934213 AATTGAGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
27 3 0.05
28 9 0.14
29 51 0.78
30 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (29 bp):
AGATATGGCACTAAGTGTGCGAGCTCGAA
Found at i:61935805 original size:42 final size:42
Alignment explanation
Indices: 61935751--61935847 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 42
61935741 ATAGCCCATC
61935751 TATGGTCTTACACGAA-ACGTCAT-ATCCATGCCATATCCCAAA
1 TATGGTCTTACACGAAGAC-TCATAAT-CATGCCATATCCCAAA
* * * *
61935793 TATGGTCTTACACGAAGTCTCGTAATGATGCCATATCCCAGA
1 TATGGTCTTACACGAAGACTCATAATCATGCCATATCCCAAA
61935835 TATGGTCTTACAC
1 TATGGTCTTACAC
61935848 ATAGTCTCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
42 46 0.94
43 3 0.06
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
TATGGTCTTACACGAAGACTCATAATCATGCCATATCCCAAA
Found at i:61940305 original size:40 final size:40
Alignment explanation
Indices: 61940246--61940453 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
61940236 CATTGGAATG
* * *
61940246 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
61940286 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
61940326 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
61940366 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
61940406 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
61940446 ATATCCGG
1 ATATCCGG
61940454 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:61947671 original size:40 final size:40
Alignment explanation
Indices: 61947612--61947819 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
61947602 CATTGGAATG
* * *
61947612 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
61947652 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
61947692 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * * *
61947732 AAATCTGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
61947772 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
61947812 ATATCCGG
1 ATATCCGG
61947820 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.02
40 134 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:61951007 original size:52 final size:52
Alignment explanation
Indices: 61950928--61951040 Score: 208
Period size: 52 Copynumber: 2.2 Consensus size: 52
61950918 AGGATGTTTC
*
61950928 AAAGTTTTTTTCAACTTGTTTTGATATGATTAGAAGGTTTCTAAACTTTCCCT
1 AAAG-TTTTTTCAACTTGCTTTGATATGATTAGAAGGTTTCTAAACTTTCCCT
61950981 AAAGTTTTTTCAACTTGCTTTGATATGATTAGAAGGTTTCTAAACTTTCCCT
1 AAAGTTTTTTCAACTTGCTTTGATATGATTAGAAGGTTTCTAAACTTTCCCT
61951033 AAAGTTTT
1 AAAGTTTT
61951041 GTTAAGAGAT
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 55 0.93
53 4 0.07
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (52 bp):
AAAGTTTTTTCAACTTGCTTTGATATGATTAGAAGGTTTCTAAACTTTCCCT
Found at i:61959067 original size:60 final size:60
Alignment explanation
Indices: 61959000--61959136 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 60
61958990 AACTATGTTA
* *
61959000 ATATGGGCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTATGGCCCAGATTGATACTG
1 ATATGGGCAAGGCCCAATATACTCTCATAC-TATAA-AGGGCTATGGCCCAGATTAATACTG
* * * * *
61959060 ATATGGGCTAGGCCCAGTATACTCTGATACTATAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCAAGGCCCAATATACTCTCATACTATAAAGGGCTATGGCCCAGATTAATACTG
*
61959120 ATATGTGCTAAGGCCCA
1 ATATGGGC-AAGGCCCA
61959137 GTTAACTCTG
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
60 48 0.74
61 15 0.23
62 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (60 bp):
ATATGGGCAAGGCCCAATATACTCTCATACTATAAAGGGCTATGGCCCAGATTAATACTG
Found at i:61964575 original size:21 final size:22
Alignment explanation
Indices: 61964550--61964604 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
61964540 ATAGCCTGCA
* *
61964550 ACACGAGCGTGTCCCATGG-TC
1 ACACGGGCGTGTCCCATGGACC
* *
61964571 ACACGGGCATGTCCCTTGGACC
1 ACACGGGCGTGTCCCATGGACC
61964593 ACACGGGCGTGT
1 ACACGGGCGTGT
61964605 AAGCCCTGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (22 bp):
ACACGGGCGTGTCCCATGGACC
Found at i:61966931 original size:48 final size:48
Alignment explanation
Indices: 61966879--61966971 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
61966869 ATGTCAGTGT
* * * *
61966879 CGATGCCATGTCCTAGACATGGTCTTATACTAG-CACACATATCATCAC
1 CGATGCCATGACCCAGACATGGTCTTACAC-AGACACAAATATCATCAC
61966927 CGATGCCATGACCCAGACATGGTCTTACACAGACACAAATATCAT
1 CGATGCCATGACCCAGACATGGTCTTACACAGACACAAATATCAT
61966972 TAATCACAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 2 0.05
48 38 0.95
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (48 bp):
CGATGCCATGACCCAGACATGGTCTTACACAGACACAAATATCATCAC
Found at i:61980883 original size:3 final size:3
Alignment explanation
Indices: 61980875--61980923 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
61980865 AATGTATTAT
61980875 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
61980923 A
1 A
61980924 AAGAAAGTGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:61980963 original size:9 final size:9
Alignment explanation
Indices: 61980947--61980986 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
61980937 CATGCAAATT
61980947 AAAAGAAA-
1 AAAAGAAAG
61980955 AAGAAGAAAG
1 AA-AAGAAAG
61980965 AAAAGAAAG
1 AAAAGAAAG
61980974 AAAAAGAAAG
1 -AAAAGAAAG
61980984 AAA
1 AAA
61980987 GACAAGAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.07
9 16 0.55
10 11 0.38
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:61980984 original size:23 final size:22
Alignment explanation
Indices: 61980948--61980994 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
61980938 ATGCAAATTA
61980948 AAAGAAAAAGAAGAAAGAAAAG
1 AAAGAAAAAGAAGAAAGAAAAG
*
61980970 AAAGAAAAAGAAAGAAAGACAAG
1 AAAGAAAAAG-AAGAAAGAAAAG
61980993 AA
1 AA
61980995 GGGAGAATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (22 bp):
AAAGAAAAAGAAGAAAGAAAAG
Found at i:61980994 original size:19 final size:19
Alignment explanation
Indices: 61980947--61980986 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
61980937 CATGCAAATT
*
61980947 AAAAGAAA-AAGAAGAAAG
1 AAAAGAAAGAAAAAGAAAG
61980965 AAAAGAAAGAAAAAGAAAG
1 AAAAGAAAGAAAAAGAAAG
61980984 AAA
1 AAA
61980987 GACAAGAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (19 bp):
AAAAGAAAGAAAAAGAAAG
Found at i:61981784 original size:43 final size:43
Alignment explanation
Indices: 61981734--61981956 Score: 320
Period size: 43 Copynumber: 5.2 Consensus size: 43
61981724 TTAAAAAAAT
* *
61981734 GCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGGGAAAGC
* *
61981777 ACCGCTAAAAGTCACGGCTTTTAGCGGCATTTGTGGGGAAAGC
1 GCCGCTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGGGAAAGC
*
61981820 GCCACTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGGGAAAGC
1 GCCGCTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGGGAAAGC
* * *
61981863 GCCGCTAAAAGTAACGGCTTTTAGCGACGTTTGTTGGGAAAGC
1 GCCGCTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGGGAAAGC
* * * ** *
61981906 GCCGCTAAAAGTCACGACTTTTAGCGTCGTTTTTTTGGAAAAC
1 GCCGCTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGGGAAAGC
61981949 GCCGCTAA
1 GCCGCTAA
61981957 TTTTAACAGA
Statistics
Matches: 163, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 163 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (43 bp):
GCCGCTAAAAGTCACGGCTTTTAGCGGCGTTTGTGGGGAAAGC
Found at i:61982348 original size:21 final size:21
Alignment explanation
Indices: 61982324--61982420 Score: 83
Period size: 21 Copynumber: 4.6 Consensus size: 21
61982314 TCTGCTACCA
61982324 TCGCTGCTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
61982345 TCGCT-CGTGCCTCGGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
* *
61982366 TCACTACTG-CTGCTGCCTCCC
1 TCGCTGCTGCCT-CTGCCTCCC
**
61982387 TCGCTGCT-ATTGCTGCCTCCC
1 TCGCTGCTGCCT-CTGCCTCCC
**
61982408 TTTCTGCTGCCTC
1 TCGCTGCTGCCTC
61982421 CGCTCTAAGT
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
20 3 0.05
21 56 0.92
22 2 0.03
ACGTcount: A:0.03, C:0.47, G:0.19, T:0.31
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:61988012 original size:74 final size:74
Alignment explanation
Indices: 61987891--61988231 Score: 542
Period size: 74 Copynumber: 4.6 Consensus size: 74
61987881 ATAAAAGGGA
* *
61987891 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAGGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
*
61987956 GTAAGTAAT
66 GTAAGTTAT
*
61987965 TTATCTTATGTAAATTATGTAAGATATGATACGTCA-TTATGTATTATGTAAGTTATGTAAATTA
1 TTATCTTATGTAAATTATGTAAGATATGATACAT-ATTTATGTATTATGTAAGTTATGTAAATTA
*
61988029 TATAAGTTAT
65 TGTAAGTTAT
*
61988039 TTATCTTATGTAAATTATGTAAGATATGATACGTCA-TTATGTATTATGTAAGTTATGTAAATTA
1 TTATCTTATGTAAATTATGTAAGATATGATACAT-ATTTATGTATTATGTAAGTTATGTAAATTA
*
61988103 TGTAAATTAT
65 TGTAAGTTAT
* * *
61988113 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAATTATGTGAATTAT
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
61988178 GTAAGTTAT
66 GTAAGTTAT
* *
61988187 TTACCTTATGTAAATTATGTAAGATATGATATATATTTATGTATT
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATT
61988232 GTGATTGAGT
Statistics
Matches: 252, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
73 1 0.00
74 250 0.99
75 1 0.00
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.47
Consensus pattern (74 bp):
TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
GTAAGTTAT
Found at i:61988214 original size:9 final size:9
Alignment explanation
Indices: 61987896--61988208 Score: 146
Period size: 9 Copynumber: 33.9 Consensus size: 9
61987886 AGGGATTATC
61987896 TTATGTAAA
1 TTATGTAAA
61987905 TTATGTAAGA
1 TTATGTAA-A
61987915 -TATGATATATA
1 TTATG-TA-A-A
61987926 TTTATGT--A
1 -TTATGTAAA
**
61987934 TTATGTAGG
1 TTATGTAAA
61987943 TTATGTAAA
1 TTATGTAAA
*
61987952 TTATGTAAG
1 TTATGTAAA
* * **
61987961 TAATTTATC
1 TTATGTAAA
61987970 TTATGTAAA
1 TTATGTAAA
61987979 TTATGTAAGA
1 TTATGTAA-A
*
61987989 -TATGATACGTCA
1 TTATG-TA---AA
61988001 TTATGT--A
1 TTATGTAAA
*
61988008 TTATGTAAG
1 TTATGTAAA
61988017 TTATGTAAA
1 TTATGTAAA
* *
61988026 TTATATAAG
1 TTATGTAAA
* **
61988035 TTATTTATC
1 TTATGTAAA
61988044 TTATGTAAA
1 TTATGTAAA
61988053 TTATGTAAGA
1 TTATGTAA-A
*
61988063 -TATGATACGTCA
1 TTATG-TA---AA
61988075 TTATGT--A
1 TTATGTAAA
*
61988082 TTATGTAAG
1 TTATGTAAA
61988091 TTATGTAAA
1 TTATGTAAA
61988100 TTATGTAAA
1 TTATGTAAA
* **
61988109 TTATTTATC
1 TTATGTAAA
61988118 TTATGTAAA
1 TTATGTAAA
61988127 TTATGTAAGA
1 TTATGTAA-A
61988137 -TATGATATATA
1 TTATG-TA-A-A
61988148 TTTATGT--A
1 -TTATGTAAA
61988156 TTATGTAAA
1 TTATGTAAA
*
61988165 TTATGTGAA
1 TTATGTAAA
*
61988174 TTATGTAAG
1 TTATGTAAA
* **
61988183 TTATTTACC
1 TTATGTAAA
61988192 TTATGTAAA
1 TTATGTAAA
61988201 TTATGTAA
1 TTATGTAA
61988209 GATATGATAT
Statistics
Matches: 231, Mismatches: 43, Indels: 60
0.69 0.13 0.18
Matches are distributed among these distances:
7 26 0.11
8 2 0.01
9 165 0.71
10 12 0.05
11 4 0.02
12 6 0.03
13 16 0.07
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.47
Consensus pattern (9 bp):
TTATGTAAA
Found at i:61988445 original size:12 final size:12
Alignment explanation
Indices: 61988406--61988457 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
61988396 TTTTTTGTGA
61988406 TTAAAATAAAA-
1 TTAAAATAAAAT
*
61988417 -TAAAAGAAAATAT
1 TTAAAA-TAAA-AT
61988430 TTAAAATAAAAT
1 TTAAAATAAAAT
*
61988442 TTAAAATACAAT
1 TTAAAATAAAAT
61988454 TTAA
1 TTAA
61988458 TTTAATTAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
10 5 0.15
11 3 0.09
12 18 0.53
13 3 0.09
14 5 0.15
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (12 bp):
TTAAAATAAAAT
Found at i:61988522 original size:5 final size:5
Alignment explanation
Indices: 61988512--61988551 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
61988502 TTTTCCTGAT
**
61988512 TAAAA TAAAA TAAAA TAAAA TAAAA T-ATT TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
61988552 TTTAAATACA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 2 0.07
5 28 0.93
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (5 bp):
TAAAA
Found at i:61988557 original size:13 final size:14
Alignment explanation
Indices: 61988511--61988557 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
61988501 TTTTTCCTGA
*
61988511 TTAAAATAAAATAAA
1 TTAAAATAAAAT-AT
*
61988526 ATAAAATAAAATAT
1 TTAAAATAAAATAT
61988540 TTAAAATAAAAT-T
1 TTAAAATAAAATAT
61988553 TTAAA
1 TTAAA
61988558 TACAATTTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 6 0.21
14 12 0.41
15 11 0.38
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:61988563 original size:110 final size:108
Alignment explanation
Indices: 61988352--61988680 Score: 456
Period size: 110 Copynumber: 3.1 Consensus size: 108
61988342 AATAATGATT
* *
61988352 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTT-TG--TGATTAAAATA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCTGATTAAATAAAATA
* *
61988414 AAATAAAAGAAAATATTTAAAATAAAATTTAAAATACAATTTA
66 AAATAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
61988457 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTT-CTGATT-AAATAAAA
*
61988522 TAAAATAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTC
64 TAAAATAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
* * *
61988567 ATTTAATTAGGTAATTTAAAATTAAAATAAAAGTGGACAAAATATTTATCGTGATTAAAT----T
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTC-TGATTAAATAAAAT
* * * * * *
61988628 AAATTAAAATAATATCTTCAAAATAAAACTTTAATTACAATTTA
65 AAAATAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
61988672 ATTTAATTA
1 ATTTAATTA
61988681 ATAAGGTTAA
Statistics
Matches: 203, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
105 96 0.47
107 2 0.01
109 6 0.03
110 99 0.49
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (108 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCTGATTAAATAAAATA
AAATAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
Found at i:61988692 original size:110 final size:104
Alignment explanation
Indices: 61988352--61988680 Score: 469
Period size: 105 Copynumber: 3.1 Consensus size: 104
61988342 AATAATGATT
* *
61988352 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTTGTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAATTAAAA
*
61988417 TAAAAGAAAATATTTAAAATAAAATTTAAAATACAATTTA
66 TAAAATAAAATATTTAAAATAAAATTT-AAATACAATTTA
*
61988457 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATT-AAAT----
*
61988522 TAAAATAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTC
61 TAAAATAAAATAAAATATTTAAAATAAAA-TTTAAATACAATTTA
* * * *
61988567 ATTTAATTAGGTAATTTAAAATTAAAATAAAAGTGGACAAAATATTTATCGTGATTAAATTAAAT
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAATTAAAA
* * * *
61988632 TAAAATAATATCTTCAAAATAAAACTTTAATTACAATTTA
66 TAAAATAAAATATTTAAAATAAAA-TTTAAATACAATTTA
61988672 ATTTAATTA
1 ATTTAATTA
61988681 ATAAGGTTAA
Statistics
Matches: 202, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
105 101 0.50
106 3 0.01
109 4 0.02
110 91 0.45
111 3 0.01
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (104 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAATTAAAA
TAAAATAAAATATTTAAAATAAAATTTAAATACAATTTA
Found at i:61992652 original size:205 final size:204
Alignment explanation
Indices: 61992292--61992700 Score: 676
Period size: 205 Copynumber: 2.0 Consensus size: 204
61992282 AAATACGCTG
* * *
61992292 TTCCTTTGAACCCAAAAATTATCGAGGAGATGAGTAGAGAAGAACTTACAGGTGTAAACGCAAAA
1 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAAAGAAGAACTTACAGGTGTAAACGCAAAA
* *
61992357 AGCAAAAGGGGTTTTTTTGGATGTCGAATTGGGGAATTTTAGAGATGAGCAGATGAGCAGAGAAG
66 AGCAAAAGGGGTTTTTTCGGATGTCGAATTGAGGAATTTTAGAGATGAGCAGATGAGCAGAGAAG
*
61992422 AACGTACAGGTGAATTTTAGAGATTTCAAAATGGGGAAGAAGGGGTTTTTTTCGGATGTCAAATT
131 AACGTACAGGTAAATTTTAGAGATTTCAAAATGGGGAAGAAGGGG-TTTTTTCGGATGTCAAATT
*
61992487 GGGGTAAAAC
195 GGGGAAAAAC
* *
61992497 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAAATAATAACTTACAGGTGTAAACG-AAAA
1 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAAAGAAGAACTTACAGGTGTAAACGCAAAA
61992561 AGGCAAAAGGGGTTTTTTCGGATGTCGAATTGAGGAATTTTAGAGATGAGCAGATGAGCAGAGAA
66 A-GCAAAAGGGGTTTTTTCGGATGTCGAATTGAGGAATTTTAGAGATGAGCAGATGAGCAGAGAA
* * * *
61992626 GAACTTACAGGTAAATTTTTGAGATTTCAAACTGGGGAAGATGGGGTTTTTTCGGATGTCAAATT
130 GAACGTACAGGTAAATTTTAGAGATTTCAAAATGGGGAAGAAGGGGTTTTTTCGGATGTCAAATT
61992691 GGGGAAAAAC
195 GGGGAAAAAC
61992701 AAGTGATAAT
Statistics
Matches: 190, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
204 33 0.17
205 157 0.83
ACGTcount: A:0.36, C:0.10, G:0.28, T:0.26
Consensus pattern (204 bp):
TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAAAGAAGAACTTACAGGTGTAAACGCAAAA
AGCAAAAGGGGTTTTTTCGGATGTCGAATTGAGGAATTTTAGAGATGAGCAGATGAGCAGAGAAG
AACGTACAGGTAAATTTTAGAGATTTCAAAATGGGGAAGAAGGGGTTTTTTCGGATGTCAAATTG
GGGAAAAAC
Found at i:61993074 original size:18 final size:18
Alignment explanation
Indices: 61993039--61993073 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
61993029 TAAAATTATT
*
61993039 TAATATATAATTTAAAAA
1 TAATATATAATTAAAAAA
61993057 TAATATA-AATTAAAAAA
1 TAATATATAATTAAAAAA
61993074 AATCACTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAATATATAATTAAAAAA
Found at i:61993471 original size:7 final size:7
Alignment explanation
Indices: 61993376--61993515 Score: 75
Period size: 7 Copynumber: 19.3 Consensus size: 7
61993366 CCATTTAATG
61993376 CCTTAAC
1 CCTTAAC
*
61993383 CCTAAATC
1 CCTTAA-C
*
61993391 CCTAAAC
1 CCTTAAC
*
61993398 CCATAAC
1 CCTTAAC
*
61993405 CCCTAAC
1 CCTTAAC
* * *
61993412 TCATAGC
1 CCTTAAC
61993419 CCTTAGAC
1 CCTTA-AC
61993427 CCTTAAC
1 CCTTAAC
* *
61993434 CCCTAAA
1 CCTTAAC
*
61993441 CTTTAAAC
1 CCTT-AAC
*
61993449 CCTAAAC
1 CCTTAAC
*
61993456 CATGT-AC
1 CCT-TAAC
61993463 CCTTAAC
1 CCTTAAC
61993470 CCTTAAC
1 CCTTAAC
* *
61993477 CATTGGAC
1 CCTT-AAC
61993485 CCTTAAC
1 CCTTAAC
*
61993492 TCTTAGAC
1 CCTTA-AC
61993500 CCTTAAC
1 CCTTAAC
*
61993507 CTTTAAC
1 CCTTAAC
61993514 CC
1 CC
61993516 CTAAATCATA
Statistics
Matches: 98, Mismatches: 28, Indels: 14
0.70 0.20 0.10
Matches are distributed among these distances:
6 1 0.01
7 69 0.70
8 28 0.29
ACGTcount: A:0.31, C:0.39, G:0.04, T:0.26
Consensus pattern (7 bp):
CCTTAAC
Found at i:61993488 original size:15 final size:14
Alignment explanation
Indices: 61993463--61993509 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
61993453 AACCATGTAC
61993463 CCTTA-ACCCTTAA
1 CCTTAGACCCTTAA
*
61993476 CCATTGGACCCTTAA
1 CC-TTAGACCCTTAA
61993491 CTCTTAGACCCTTAA
1 C-CTTAGACCCTTAA
61993506 CCTT
1 CCTT
61993510 TAACCCCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 2 0.07
14 5 0.17
15 21 0.72
16 1 0.03
ACGTcount: A:0.26, C:0.36, G:0.06, T:0.32
Consensus pattern (14 bp):
CCTTAGACCCTTAA
Found at i:61993491 original size:22 final size:21
Alignment explanation
Indices: 61993446--61993496 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
61993436 CTAAACTTTA
* *
61993446 AACCCTAAACCATGTACCCTT
1 AACCCTTAACCATGGACCCTT
61993467 AACCCTTAACCATTGGACCCTT
1 AACCCTTAACCA-TGGACCCTT
*
61993489 AACTCTTA
1 AACCCTTA
61993497 GACCCTTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.31, C:0.35, G:0.06, T:0.27
Consensus pattern (21 bp):
AACCCTTAACCATGGACCCTT
Found at i:61993585 original size:15 final size:14
Alignment explanation
Indices: 61993565--61993598 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
61993555 AACCATAAAT
*
61993565 CATAATCCCTAAGTC
1 CATAATCCATAA-TC
61993580 CATAATCCATAATC
1 CATAATCCATAATC
61993594 CATAA
1 CATAA
61993599 ACCTTGAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (14 bp):
CATAATCCATAATC
Found at i:61993588 original size:7 final size:7
Alignment explanation
Indices: 61993565--61993598 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
61993555 AACCATAAAT
61993565 CATAATC
1 CATAATC
*
61993572 CCTAAGTC
1 CATAA-TC
61993580 CATAATC
1 CATAATC
61993587 CATAATC
1 CATAATC
61993594 CATAA
1 CATAA
61993599 ACCTTGAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (7 bp):
CATAATC
Found at i:61993712 original size:14 final size:14
Alignment explanation
Indices: 61993689--61993734 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
61993679 TTAACTCATC
61993689 ATAAACCCTAAACT
1 ATAAACCCTAAACT
* *
61993703 ATATACCCTAAACC
1 ATAAACCCTAAACT
*
61993717 ATAAACCTTAAACT
1 ATAAACCCTAAACT
61993731 ATAA
1 ATAA
61993735 TGATAAGTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (14 bp):
ATAAACCCTAAACT
Found at i:61994156 original size:41 final size:41
Alignment explanation
Indices: 61994041--61994136 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
61994031 ACTATAAATA
61994041 GAGCATTAGCGGCGTTTTTCAGAAAGCGCCGCTATAGATCT
1 GAGCATTAGCGGCGTTTTTCAGAAAGCGCCGCTATAGATCT
*
61994082 GAGCATTAGCGGTGTTTTTCAGAAAGCGCCGCTATAGATCT
1 GAGCATTAGCGGCGTTTTTCAGAAAGCGCCGCTATAGATCT
61994123 GAGCATTAGCGGCG
1 GAGCATTAGCGGCG
61994137 CTTTAGGCAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (41 bp):
GAGCATTAGCGGCGTTTTTCAGAAAGCGCCGCTATAGATCT
Found at i:61995095 original size:22 final size:23
Alignment explanation
Indices: 61995051--61995101 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
61995041 AGTATAGTAC
*
61995051 GAAA-TGATATGGTAATATGCTT
1 GAAATTGAAATGGTAATATGCTT
61995073 GAAATTGAAATGGTAATAT-CTT
1 GAAATTGAAATGGTAATATGCTT
*
61995095 GTAATTG
1 GAAATTG
61995102 TAAGCTTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (23 bp):
GAAATTGAAATGGTAATATGCTT
Found at i:61998377 original size:35 final size:35
Alignment explanation
Indices: 61998338--61998410 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
61998328 CACATTTATG
*
61998338 TATGATAATTCAATGCACTTCATGTACCATAGAAA
1 TATGACAATTCAATGCACTTCATGTACCATAGAAA
*
61998373 TATGACAATTCAATGCACTTCATGTACCATAGACA
1 TATGACAATTCAATGCACTTCATGTACCATAGAAA
61998408 TAT
1 TAT
61998411 TTTTAAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (35 bp):
TATGACAATTCAATGCACTTCATGTACCATAGAAA
Found at i:61998803 original size:30 final size:30
Alignment explanation
Indices: 61998769--61998829 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
61998759 TCCTTAACTC
61998769 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
61998799 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
61998829 A
1 A
61998830 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:62005541 original size:27 final size:28
Alignment explanation
Indices: 62005511--62005579 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
62005501 ATAGTAAGTC
*
62005511 CGCACACTTAGTGCT-TA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
62005538 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
62005566 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62005580 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:62013267 original size:27 final size:28
Alignment explanation
Indices: 62013237--62013305 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
62013227 ATAGTAAGTC
*
62013237 CGCACACTTAGTGCT-TA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
62013264 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
62013292 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62013306 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:62017420 original size:20 final size:20
Alignment explanation
Indices: 62017395--62017439 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
62017385 AGGGACTAAA
*
62017395 ATGAAAAATTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
62017415 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
62017435 ATGAA
1 ATGAA
62017440 TACATGTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:62019889 original size:20 final size:21
Alignment explanation
Indices: 62019854--62019910 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
62019844 TGATACGTGG
62019854 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
62019872 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
62019893 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
62019911 GAATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:62020005 original size:25 final size:25
Alignment explanation
Indices: 62019960--62020030 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
62019950 GAGGAAGTGC
**
62019960 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
62019986 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
62020011 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
62020031 ATTAAAGAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 33 0.77
26 10 0.23
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:62024074 original size:59 final size:59
Alignment explanation
Indices: 62023982--62024096 Score: 230
Period size: 59 Copynumber: 1.9 Consensus size: 59
62023972 TATCGGACCA
62023982 TATGAGATTATCGAAAGAATAGGGGCGAGTGCCATATCGACTAGCTAACATCAGAACCG
1 TATGAGATTATCGAAAGAATAGGGGCGAGTGCCATATCGACTAGCTAACATCAGAACCG
62024041 TATGAGATTATCGAAAGAATAGGGGCGAGTGCCATATCGACTAGCTAACATCAGAA
1 TATGAGATTATCGAAAGAATAGGGGCGAGTGCCATATCGACTAGCTAACATCAGAA
62024097 TTAGAAAATA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (59 bp):
TATGAGATTATCGAAAGAATAGGGGCGAGTGCCATATCGACTAGCTAACATCAGAACCG
Done.