Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 200 of 438
Found at i:62026823 original size:26 final size:26
Alignment explanation
Indices: 62026765--62026942 Score: 124
Period size: 27 Copynumber: 6.7 Consensus size: 26
62026755 CACATAGAGT
* * * * *
62026765 AAAACAATCATCTTACCATAAAAGTA
1 AAAACAGTCATTTTACCACATAAGGA
* *
62026791 CAAAACAGTTATTTTATCACATAAGGA
1 -AAAACAGTCATTTTACCACATAAGGA
* *
62026818 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAA-GGA
* * ** *
62026845 AAAACAATCATTTCACCTTATAAGGGC
1 AAAACAGTCATTTTACCACATAA-GGA
* *
62026872 AAAACAATCATTTTACCCCATAAGGA
1 AAAACAGTCATTTTACCACATAAGGA
* * * *
62026898 CAAAATAGTCATTTTGCCTCATAAGGG
1 -AAAACAGTCATTTTACCACATAAGGA
62026925 AAAACTAGTCA-TTTACCA
1 AAAAC-AGTCATTTTACCA
62026943 ATTTGAGGGT
Statistics
Matches: 122, Mismatches: 26, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
26 31 0.25
27 91 0.75
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (26 bp):
AAAACAGTCATTTTACCACATAAGGA
Found at i:62026856 original size:27 final size:27
Alignment explanation
Indices: 62026791--62026938 Score: 165
Period size: 27 Copynumber: 5.5 Consensus size: 27
62026781 CATAAAAGTA
* * *
62026791 CAAAACAGTTATTTTATCACATAA-GG
1 CAAAACAGTCATTTTACCTCATAAGGG
*
62026817 AAAAACAGTCATTTTACCTCATAAGGG
1 CAAAACAGTCATTTTACCTCATAAGGG
* * *
62026844 CAAAACAATCATTTCACCTTATAAGGG
1 CAAAACAGTCATTTTACCTCATAAGGG
* * *
62026871 CAAAACAATCATTTTACCCCATAAGGA
1 CAAAACAGTCATTTTACCTCATAAGGG
* *
62026898 CAAAATAGTCATTTTGCCTCATAAGGG
1 CAAAACAGTCATTTTACCTCATAAGGG
62026925 -AAAACTAGTCATTT
1 CAAAAC-AGTCATTT
62026939 ACCAATTTGA
Statistics
Matches: 102, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 24 0.24
27 78 0.76
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.28
Consensus pattern (27 bp):
CAAAACAGTCATTTTACCTCATAAGGG
Found at i:62026876 original size:80 final size:79
Alignment explanation
Indices: 62026765--62026942 Score: 214
Period size: 80 Copynumber: 2.2 Consensus size: 79
62026755 CACATAGAGT
* * * *
62026765 AAAACAATCATCTTACCATAAAAGTACAAAACAGTTATTTTATCACATAAGGA-AAAACAGTCAT
1 AAAACAATCAT-TTACCATAAAAGGACAAAACAATCATTTTACCACATAAGGACAAAACAGTCAT
62026829 TTTACCTCATAAGGG
65 TTTACCTCATAAGGG
* * * * *
62026844 CAAAACAATCATTTCACCTTATAAGGGCAAAACAATCATTTTACCCCATAAGGACAAAATAGTCA
1 -AAAACAATCATTT-ACCATAAAAGGACAAAACAATCATTTTACCACATAAGGACAAAACAGTCA
*
62026909 TTTTGCCTCATAAGGG
64 TTTTACCTCATAAGGG
*
62026925 AAAACTAGTCATTTACCA
1 AAAAC-AATCATTTACCA
62026943 ATTTGAGGGT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 2 0.02
80 50 0.60
81 31 0.37
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (79 bp):
AAAACAATCATTTACCATAAAAGGACAAAACAATCATTTTACCACATAAGGACAAAACAGTCATT
TTACCTCATAAGGG
Found at i:62029036 original size:126 final size:126
Alignment explanation
Indices: 62028811--62029064 Score: 481
Period size: 126 Copynumber: 2.0 Consensus size: 126
62028801 ATAGATAGGC
*
62028811 TGGGACAATGCATCAATCTAATCCTTGCATCCAGATTAGGCATATTGCTAGATGACGAGGACCCA
1 TGGGACAATGCATCAATCTAACCCTTGCATCCAGATTAGGCATATTGCTAGATGACGAGGACCCA
*
62028876 GCTCGAGCCCCTCCACGACCTCTATCGCAACCTCTTGTACCCTGTTTGTGAGTACCACTTG
66 GCTCCAGCCCCTCCACGACCTCTATCGCAACCTCTTGTACCCTGTTTGTGAGTACCACTTG
62028937 TGGGACAATGCATCAATCTAACCCTTGCATCCAGATTAGGCATATTGCTAGATGACGAGGACCCA
1 TGGGACAATGCATCAATCTAACCCTTGCATCCAGATTAGGCATATTGCTAGATGACGAGGACCCA
*
62029002 GCTCCAGCCCCTCCACGACCTCTATCGCAACCTCTTGTACCCTGTTTGTGAGTACTACTTG
66 GCTCCAGCCCCTCCACGACCTCTATCGCAACCTCTTGTACCCTGTTTGTGAGTACCACTTG
62029063 TG
1 TG
62029065 CTCATTGTCT
Statistics
Matches: 125, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (126 bp):
TGGGACAATGCATCAATCTAACCCTTGCATCCAGATTAGGCATATTGCTAGATGACGAGGACCCA
GCTCCAGCCCCTCCACGACCTCTATCGCAACCTCTTGTACCCTGTTTGTGAGTACCACTTG
Found at i:62036661 original size:79 final size:80
Alignment explanation
Indices: 62036563--62036744 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 80
62036553 TACTCGTTCA
* *
62036563 AATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCAG
1 AATGCCTTCGGGACTTAGCCCGGGAT-TAGTAACTCACACAAATGCCTT-GGGATCTTAACCCAG
*
62036626 ATTTAGTAACTT-GCACC
64 ATATAGTAACTTAGCA-C
* * ** *
62036643 AATGCCTTCGGG-CTTAGCCCGGGATTAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGGATTAGTAACTCACACAAATGCCTTGGGATCTTAACCCAGAT
*
62036707 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
62036722 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
62036745 ACATCATTCG
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGGATTAGTAACTCACACAAATGCCTTGGGATCTTAACCCAGAT
ATAGTAACTTAGCAC
Found at i:62036745 original size:40 final size:41
Alignment explanation
Indices: 62036561--62036745 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
62036551 GCTACTCGTT
* * *
62036561 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * *
62036601 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* *
62036641 CCAATGCCTTCGGG-CTTAGCCCGGGAT-TAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATATAGTAACTTAGCA
* * *
62036680 CAAATGCCTT-TGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
62036721 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62036746 CATCATTCGA
Statistics
Matches: 121, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
38 3 0.02
39 30 0.25
40 77 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:62039124 original size:4 final size:4
Alignment explanation
Indices: 62039103--62039147 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
62039093 ATGCAAATTA
*
62039103 AAAG AAAA AAAG -AAG AAAG AAAAG AAAG -AA- AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG -AAAG AAAG AAAG AAAG AAAG AAAG AAA
62039148 AGAAGAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
3 7 0.20
4 24 0.69
5 4 0.11
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:62039141 original size:23 final size:24
Alignment explanation
Indices: 62039103--62039151 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
62039093 ATGCAAATTA
62039103 AAAGAAAAAAAGAAGAAAGAAAAG
1 AAAGAAAAAAAGAAGAAAGAAAAG
*
62039127 AAAGAAAAAGA-AAGAAAGAAAAG
1 AAAGAAAAAAAGAAGAAAGAAAAG
62039150 AA
1 AA
62039152 GAGAGAACGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (24 bp):
AAAGAAAAAAAGAAGAAAGAAAAG
Found at i:62039149 original size:19 final size:20
Alignment explanation
Indices: 62039103--62039151 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
62039093 ATGCAAATTA
62039103 AAAGAAAA-AAAGAAGAAAG
1 AAAGAAAAGAAAGAAGAAAG
62039122 AAA-AGAAAGAAA-AAGAAAG
1 AAAGA-AAAGAAAGAAGAAAG
62039141 AAAGAAAAGAA
1 AAAGAAAAGAA
62039152 GAGAGAACGC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
19 22 0.81
20 4 0.15
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (20 bp):
AAAGAAAAGAAAGAAGAAAG
Found at i:62043368 original size:22 final size:23
Alignment explanation
Indices: 62043323--62043374 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
62043313 GAGTATAGTA
*
62043323 TGAAA-TGATATGGTAATATGCT
1 TGAAATTGAAATGGTAATATGCT
*
62043345 TGAAATTGAAATGGTGATAT-CT
1 TGAAATTGAAATGGTAATATGCT
*
62043367 TGTAATTG
1 TGAAATTG
62043375 TAAGCTTAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (23 bp):
TGAAATTGAAATGGTAATATGCT
Found at i:62046617 original size:46 final size:46
Alignment explanation
Indices: 62046567--62046691 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
62046557 TGAGCATCCA
* * *
62046567 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
*
62046613 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
*
62046659 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62046692 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
Found at i:62049663 original size:13 final size:13
Alignment explanation
Indices: 62049645--62049672 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
62049635 TTGATTTCAG
62049645 TGGGATTAAATGA
1 TGGGATTAAATGA
62049658 TGGGATTAAATGA
1 TGGGATTAAATGA
62049671 TG
1 TG
62049673 TTTTCTTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (13 bp):
TGGGATTAAATGA
Found at i:62049812 original size:15 final size:15
Alignment explanation
Indices: 62049773--62049852 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
62049763 GTATCTTGGG
* *
62049773 TTTCTTTATCCTAGA
1 TTTCTTTATTCTGGA
*
62049788 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
62049803 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
62049818 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
62049833 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
62049847 TTTCTT
1 TTTCTT
62049853 GTTATCTTTG
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 10 0.19
15 42 0.78
16 2 0.04
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:62049833 original size:30 final size:30
Alignment explanation
Indices: 62049764--62049851 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
62049754 CATAGTATCG
* * * * *
62049764 TATCTTGGGTTTCTTTATCCTAGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
62049794 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
62049824 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
62049852 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
29 8 0.16
30 40 0.82
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:62052293 original size:46 final size:46
Alignment explanation
Indices: 62052243--62052418 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
62052233 TGGTTGAGCA
* *
62052243 TCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
62052289 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
62052336 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
62052382 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62052419 GCGGGATACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:62052399 original size:93 final size:93
Alignment explanation
Indices: 62052240--62052410 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
62052230 GGATGGTTGA
* *
62052240 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
62052305 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
62052333 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
62052398 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62052411 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62054446 original size:120 final size:119
Alignment explanation
Indices: 62054242--62054487 Score: 279
Period size: 120 Copynumber: 2.1 Consensus size: 119
62054232 GGGCTAAGTC
* *
62054242 CCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTA
**
62054307 AATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGATTAAGA-T
66 AATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAATCCGG-TTAA-ACT
* * **
62054362 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTAC
1 CCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTAC
* * * *
62054425 TATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGCTATATCCGGTTAAACT
64 TA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAACT
62054481 CCGAAGG
1 CCGAAGG
62054488 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
118 1 0.01
119 16 0.15
120 82 0.76
121 9 0.08
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (119 bp):
CCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTA
AATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAACT
Found at i:62054454 original size:40 final size:40
Alignment explanation
Indices: 62054229--62054426 Score: 276
Period size: 40 Copynumber: 5.0 Consensus size: 40
62054219 TCGAATGATG
* * * *
62054229 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
62054269 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
62054309 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
62054349 TCCGGATTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
62054389 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
62054427 TAACCGGGCT
Statistics
Matches: 148, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 1 0.01
40 139 0.94
41 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62054468 original size:40 final size:40
Alignment explanation
Indices: 62054230--62054473 Score: 137
Period size: 40 Copynumber: 6.1 Consensus size: 40
62054220 CGAATGATGT
** * *
62054230 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGCT-ACTATAA
* ** *
62054270 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* ** *
62054309 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
** ** *
62054349 TCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* **
62054389 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
* * *
62054430 CCGGGCTATGTCCCGAAGGTATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTA-CTATAA
62054470 CCGG
1 CCGG
62054474 TTAAACTCCG
Statistics
Matches: 185, Mismatches: 12, Indels: 14
0.88 0.06 0.07
Matches are distributed among these distances:
39 4 0.02
40 170 0.92
41 11 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
Found at i:62058144 original size:2 final size:2
Alignment explanation
Indices: 62058137--62058161 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
62058127 AGGATGCCAT
62058137 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
62058162 TGCATACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:62060321 original size:40 final size:39
Alignment explanation
Indices: 62060245--62060448 Score: 216
Period size: 40 Copynumber: 5.2 Consensus size: 39
62060235 ATGATACCCA
* * *
62060245 GGCTAAGTCCCGAAGGCATTATGCTA-ATGATTATATCCG
1 GGCTAAGACCCGAAGGCATTGTGCTAGTTG-TTATATCCG
62060284 GGCTAAGACCCGAAGGCATTCGTGCTAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCG
62060324 GGCTAAGACCCGAAGGCATTCGTG-TGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATT-GTGCT-AGTTGTTATATCCG
* * *** *
62060364 GGCTAAGACCCAAAGGCATTTGTGCAAGTTACCAAATCCG
1 GGCTAAGACCCGAAGGCA-TTGTGCTAGTTGTTATATCCG
* * * *
62060404 GGTTAAGACCCGAAGGCAATTGTTCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCG
62060443 GGCTAA
1 GGCTAA
62060449 ATTCCGAAGA
Statistics
Matches: 139, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
39 25 0.18
40 109 0.78
41 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (39 bp):
GGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCG
Found at i:62062102 original size:29 final size:29
Alignment explanation
Indices: 62062068--62062172 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
62062058 TACTCGATTT
* * *
62062068 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
62062097 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
62062126 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
62062155 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
62062173 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:62062160 original size:58 final size:59
Alignment explanation
Indices: 62062106--62062228 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
62062096 CCGCACACAC
* *
62062106 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
62062164 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
62062222 AGTGCCA
1 AGTGCCA
62062229 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:62062173 original size:29 final size:29
Alignment explanation
Indices: 62062127--62062228 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
62062117 CTTCGAGCTC
62062127 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
62062156 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
62062185 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
62062214 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
62062229 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:62073778 original size:49 final size:50
Alignment explanation
Indices: 62073705--62073881 Score: 205
Period size: 52 Copynumber: 3.5 Consensus size: 50
62073695 ACTAGTGACT
* *
62073705 CAAGTGTGGTAATATGTGACGGCCACTTTGAGAAG-AGATAGCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAAGATAGCTTGGTCA
* *
62073754 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AAGATAGC-TTGGTCA
* * * *
62073806 CAACTGTGGTACTATGTGAAGGCCACTTTGTA-AAGAAGGTAGCTTTGACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTG-AGAAGAAGATAGCTTGGTC-A
* * *
62073857 CAAGGGTCGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
62073882 TGGGGTATCC
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 32 0.29
50 3 0.03
51 36 0.33
52 38 0.35
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (50 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAAGATAGCTTGGTCA
Found at i:62073821 original size:52 final size:51
Alignment explanation
Indices: 62073705--62073881 Score: 223
Period size: 51 Copynumber: 3.5 Consensus size: 51
62073695 ACTAGTGACT
* * * *
62073705 CAAGTGTGGTAATATGTGACGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTTA
62073754 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTTA
* * * **
62073806 CAACTGTGGTACTATGTGAAGGCCACTTTGTAAAGAAGGTAGCTTTGACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTTA
* * *
62073857 CAAGGGTCGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
62073882 TGGGGTATCC
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 32 0.29
51 41 0.37
52 39 0.35
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTTA
Found at i:62075965 original size:39 final size:39
Alignment explanation
Indices: 62075920--62076039 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
62075910 ATGCAAGACA
*
62075920 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTGTCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
62075959 CTGGAAATGTGTCTGGGCTAAAGTCCCGCAGGCTTC-TG
1 CTGGAAATGTGTCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
62075997 CTAGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTGTCCGGGCTAAAGTCCCGCAGGCTTCGTG
62076036 CTGG
1 CTGG
62076040 TGCTGGTAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
38 35 0.47
39 39 0.53
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTGTCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:62076015 original size:38 final size:39
Alignment explanation
Indices: 62075923--62076037 Score: 187
Period size: 38 Copynumber: 3.0 Consensus size: 39
62075913 CAAGACACTG
* *
62075923 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTGTCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
*
62075962 GAAATGTGTCTGGGCTAAAGTCCCGCAGGCTTC-TGCTA
1 GAAATGTGTCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
*
62076000 GAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTGCT
1 GAAATGTGTCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
62076038 GGTGCTGGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 35 0.50
39 35 0.50
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
GAAATGTGTCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
Found at i:62080633 original size:47 final size:47
Alignment explanation
Indices: 62080579--62080866 Score: 416
Period size: 47 Copynumber: 6.1 Consensus size: 47
62080569 TTAGGATTTT
** *
62080579 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
62080626 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62080673 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
62080720 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
62080767 ATGTGGTGAATATGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
62080814 ATGT-AGTGAATATGAACATGCATATATATGGTAAAGCCGAATGGTCA
1 ATGTGA-TGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62080861 ATGTGA
1 ATGTGA
62080867 AATATATATA
Statistics
Matches: 219, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
47 218 1.00
48 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:62080679 original size:22 final size:22
Alignment explanation
Indices: 62080603--62080679 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
62080593 AATGTGTATA
62080603 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
* * * *
62080625 AATGTGATGAATGTG-AGCAT-GCA
1 TATGTGAT-AA-G-GCCGAATGGCC
62080648 TATGTGTGATAAGGCCGAATGGCC
1 TA--TGTGATAAGGCCGAATGGCC
62080672 TATGTGAT
1 TATGTGAT
62080680 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (22 bp):
TATGTGATAAGGCCGAATGGCC
Found at i:62080775 original size:25 final size:24
Alignment explanation
Indices: 62080699--62080822 Score: 75
Period size: 24 Copynumber: 5.2 Consensus size: 24
62080689 CATGCATATA
62080699 TGTGATAAGGCCGAATGGCCAATG
1 TGTGATAAGGCCGAATGGCCAATG
* * *
62080723 TGATGA-ATGTG-AGCAT-G-CATATG
1 TG-TGATAAG-GCCGAATGGCCA-ATG
62080746 TGTGATAAGGCCGAATGGCCAATG
1 TGTGATAAGGCCGAATGGCCAATG
* **
62080770 TGGTGAATATGAAC--AT-G-CATATG
1 T-GTG-ATAAGGCCGAATGGCCA-ATG
62080793 TGTGATAAGGCCGAATGGCCAATG
1 TGTGATAAGGCCGAATGGCCAATG
62080817 TAGTGA
1 T-GTGA
62080823 ATATGAACAT
Statistics
Matches: 73, Mismatches: 12, Indels: 29
0.64 0.11 0.25
Matches are distributed among these distances:
21 5 0.07
22 11 0.15
23 18 0.25
24 19 0.26
25 15 0.21
26 5 0.07
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (24 bp):
TGTGATAAGGCCGAATGGCCAATG
Found at i:62081131 original size:37 final size:36
Alignment explanation
Indices: 62081075--62081216 Score: 212
Period size: 37 Copynumber: 3.9 Consensus size: 36
62081065 AAATATATTC
*
62081075 CGGGTGAGACCCGATGACTACGTGTGGAGATTATGT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
*
62081111 CTGGGTAAGACCCGATGACTACGTGTGGAGAGTATGT
1 C-GGGTAAGACCCGATGACTACGTGTGGAGATTATGT
*
62081148 CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGT
1 -CGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
* * *
62081185 CCGGTAAGACCCGATAACTTCGTGTGGAGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
62081217 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 30 0.31
37 66 0.68
38 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.25
Consensus pattern (36 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
Found at i:62082624 original size:78 final size:80
Alignment explanation
Indices: 62082481--62082862 Score: 534
Period size: 78 Copynumber: 4.9 Consensus size: 80
62082471 GAGAATTGAG
*
62082481 AGTGATATA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG-GATGTATCCGGACTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
62082544 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
62082559 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA-TCGTGCTTGTGATGTATCC-GACTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
62082622 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
62082637 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
62082702 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * *
62082717 AGTGATGTA-CCGGGCTAAGT-TCTAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAA-ACCC
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTCCC
62082778 ---GAGCATTCGTGCT
65 GAAGAGCATTCGTGCT
* * ** * * * * *
62082791 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
62082856 AAGAGCA
66 AAGAGCA
62082863 ATCATGCTGA
Statistics
Matches: 273, Mismatches: 19, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
74 21 0.08
75 9 0.03
76 30 0.11
77 6 0.02
78 106 0.39
79 60 0.22
80 41 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
AAGAGCATTCGTGCT
Found at i:62082689 original size:118 final size:120
Alignment explanation
Indices: 62082481--62082862 Score: 523
Period size: 118 Copynumber: 3.3 Consensus size: 120
62082471 GAGAATTGAG
* *
62082481 AGTGATATA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG-GATGTATCCGGACTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
62082544 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA-TCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62082598 TGTGATGTATCC-GACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
* *
62082662 AAGAGCATTTGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
62082717 AGTGATGTA-CCGGGCTAAGT-TCTAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCC-
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
* * **
62082778 --GAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
62082831 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
62082863 ATCATGCTGA
Statistics
Matches: 234, Mismatches: 25, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
114 53 0.23
115 10 0.04
116 8 0.03
117 38 0.16
118 103 0.44
119 22 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (120 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:62082871 original size:40 final size:40
Alignment explanation
Indices: 62082481--62082862 Score: 523
Period size: 40 Copynumber: 9.8 Consensus size: 40
62082471 GAGAATTGAG
*
62082481 AGTGATATA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
62082520 AG-GATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
62082559 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA-TCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62082598 TGTGATGTATCC-GACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
62082637 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
62082677 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62082717 AGTGATGTA-CCGGGCTAAGT-TCTAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
62082755 AGTGATATATCCGTGCTAA-ACCC---GAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
62082791 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
62082831 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
62082863 ATCATGCTGA
Statistics
Matches: 309, Mismatches: 24, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
36 32 0.10
37 3 0.01
38 47 0.15
39 88 0.28
40 139 0.45
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:62087078 original size:47 final size:47
Alignment explanation
Indices: 62087024--62087311 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
62087014 TTAGGATTTT
** *
62087024 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
62087071 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
62087118 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62087165 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
62087212 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * **
62087259 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62087306 ATGTGA
1 ATGTGA
62087312 AATATATATA
Statistics
Matches: 217, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 217 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:62087126 original size:25 final size:25
Alignment explanation
Indices: 62087051--62087126 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
62087041 GTGTATATAT
62087051 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
62087076 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
62087098 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
62087123 GTGA
1 GTGA
62087127 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:62087267 original size:25 final size:25
Alignment explanation
Indices: 62087192--62087267 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
62087182 ATGCATATAT
62087192 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
62087217 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
62087239 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
62087264 GTGA
1 GTGA
62087268 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:62087311 original size:141 final size:141
Alignment explanation
Indices: 62087023--62087302 Score: 515
Period size: 141 Copynumber: 2.0 Consensus size: 141
62087013 TTTAGGATTT
** *
62087023 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
62087088 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
62087153 GCCGAATGGCC
131 GCCGAATGGCC
62087164 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
62087229 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
62087294 GCCGAATGG
131 GCCGAATGG
62087303 TTAATGTGAA
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 134 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCGAATGGCC
Found at i:62087362 original size:94 final size:91
Alignment explanation
Indices: 62087046--62087367 Score: 333
Period size: 94 Copynumber: 3.4 Consensus size: 91
62087036 TGAATGTGTA
* * * * * *
62087046 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGA
1 TATATGTGGTAAGGCCGAATGGCCTATGTG-TGAATATGAACATGCATATATGTGATAAAGCCGA
* *
62087111 ATGGCCAATGTGGTGAATATGAACATG
65 ATGGCCAATGTGATGAATATGAGCATG
* * *
62087138 CATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
1 --TATATGTGGTAAGGCCGAATGGCCTATGTG-TGAATATGAACATGCATATATGTGATAAAGCC
*
62087203 GAATGGCCAATGTGATGAATGTGAGCATG
63 GAATGGCCAATGTGATGAATATGAGCATG
* * *
62087232 CATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCC
1 TATATGTG-G-TAAGGCCGAATGGCCTATGT-GTGAATATGAACATGCATATATGTGATAAAGCC
** * *
62087297 GAATGGTTAATGTGAAATATATATATGAGATATG
63 GAATGGCCAATGTG--AT-GA-ATATGAG-CATG
*
62087331 TATATGTGGTAAAGCCGAATGG-CTA-GTGTGAAATATG
1 TATATGTGGTAAGGCCGAATGGCCTATGTGTG-AATATG
62087368 TAGGCGATGT
Statistics
Matches: 199, Mismatches: 20, Indels: 17
0.84 0.08 0.07
Matches are distributed among these distances:
92 7 0.04
94 149 0.75
95 9 0.05
96 4 0.02
97 13 0.07
98 7 0.04
99 10 0.05
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.28
Consensus pattern (91 bp):
TATATGTGGTAAGGCCGAATGGCCTATGTGTGAATATGAACATGCATATATGTGATAAAGCCGAA
TGGCCAATGTGATGAATATGAGCATG
Found at i:62087566 original size:37 final size:37
Alignment explanation
Indices: 62087516--62087658 Score: 225
Period size: 37 Copynumber: 3.9 Consensus size: 37
62087506 GGAAATATAT
*
62087516 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
62087553 TCCGGGTAAGACCCGATGACTACGTGCGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62087590 TCCGGGTAAGACCCGATGACTAC-TGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
62087626 TCCGGGTAAGACCCGATAACTTCGTGTGGAGAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
62087659 GTCGTCTGAG
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
36 31 0.32
37 66 0.68
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62087636 original size:73 final size:74
Alignment explanation
Indices: 62087516--62087657 Score: 232
Period size: 73 Copynumber: 1.9 Consensus size: 74
62087506 GGAAATATAT
* *
62087516 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGCG
62087581 GAGAGTATG
66 GAGAGTATG
* * *
62087590 TCCGGGTAAGACCCGATGACTAC-TGTGGAGATTTTGTCCGGGTAAGACCCGATAACTTCGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGCG
62087654 GAGA
66 GAGA
62087658 TGTCGTCTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
73 41 0.65
74 22 0.35
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.23
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGCG
GAGAGTATG
Found at i:62092289 original size:39 final size:39
Alignment explanation
Indices: 62092244--62092364 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
62092234 ATGAAAGACA
*
62092244 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
**
62092283 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTTTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
62092322 CTGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
62092361 CTGG
1 CTGG
62092365 TGCTGGTAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:62095035 original size:27 final size:27
Alignment explanation
Indices: 62095005--62095176 Score: 247
Period size: 27 Copynumber: 6.4 Consensus size: 27
62094995 AGGCATAATC
*
62095005 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
62095032 GTCATTTTACCCTGTAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
62095059 GTCATTTTACCCT-TCAGGGGCATTACG
1 GTCATTTTACCCTAT-AGGGGTATTACG
62095086 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* *
62095113 GTTATTTTACCTTATAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* * *
62095140 GTCATTTTACCTTACATGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
62095167 ATCATTTTAC
1 GTCATTTTAC
62095177 AAACCGGAGG
Statistics
Matches: 133, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 131 0.98
28 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:62095201 original size:81 final size:81
Alignment explanation
Indices: 62095006--62095203 Score: 202
Period size: 81 Copynumber: 2.4 Consensus size: 81
62094996 GGCATAATCG
* * ** * *
62095006 TCATTTTACCATATAGGGGTATTACGGTCATTTTACCCTGTAGGGGTATTACGGTCATTTTACCC
1 TCATTTTACCAAACAGGGGTATTACAATAATTTTACCCTATAGGGGTATTACGGTCATTTTACCC
*
62095071 TTCAGGGGCATTACGG
66 TTCAGGGGCATTACGA
** * ** * *
62095087 TCATTTTACCCTATAGGGGTATTACGGTTATTTTACCTTATAGGGGTATTACGGTCATTTTA-CC
1 TCATTTTACCAAACAGGGGTATTACAATAATTTTACCCTATAGGGGTATTACGGTCATTTTACCC
* *
62095151 TTACATGGGTATTACGA
66 TT-CAGGGGCATTACGA
* *
62095168 TCATTTTA-CAAACCGGAGGTATTTCAATAATTTTAC
1 TCATTTTACCAAACAGG-GGTATTACAATAATTTTAC
62095204 AAATCAAGGG
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 8 0.08
81 92 0.92
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (81 bp):
TCATTTTACCAAACAGGGGTATTACAATAATTTTACCCTATAGGGGTATTACGGTCATTTTACCC
TTCAGGGGCATTACGA
Found at i:62095234 original size:27 final size:27
Alignment explanation
Indices: 62095157--62095235 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
62095147 TACCTTACAT
* * **
62095157 GGGTATTACGATCATTTTACAAA-CCG
1 GGGTATTTCGATAATTTTACAAATCAA
*
62095183 GAGGTATTTCAATAATTTTACAAATCAA
1 G-GGTATTTCGATAATTTTACAAATCAA
62095211 GGGTATTTCGATAATTTTACAAATC
1 GGGTATTTCGATAATTTTACAAATC
62095236 GAGGCCTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 42 0.93
28 2 0.04
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCAA
Found at i:62099645 original size:27 final size:26
Alignment explanation
Indices: 62099614--62099706 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 26
62099604 TTTGAGGGAT
62099614 GCACTAAGTGTGCGAATTTGATACTGA
1 GCACTAAGTGTGCGAATTTGAT-CTGA
* * * * *
62099641 GCACTAAGTGTGTGAGTTGGATTTAA
1 GCACTAAGTGTGCGAATTTGATCTGA
* * *
62099667 GCACTATGTGTGTGAATTAAT-TTCTGA
1 GCACTAAGTGTGCGAATT--TGATCTGA
62099694 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62099707 AAAATCAGTT
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 18 0.35
27 33 0.65
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
GCACTAAGTGTGCGAATTTGATCTGA
Found at i:62104940 original size:28 final size:28
Alignment explanation
Indices: 62104871--62104971 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
62104861 GACAAGATTG
* * * *
62104871 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
62104901 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62104929 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
62104958 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62104972 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62109127 original size:12 final size:12
Alignment explanation
Indices: 62109110--62109145 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
62109100 CTCAAATTTT
62109110 CCTCCTCAAATC
1 CCTCCTCAAATC
62109122 CCTCCTCAAATC
1 CCTCCTCAAATC
*
62109134 TCTCCTCAAATC
1 CCTCCTCAAATC
62109146 ACTCAAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.25, C:0.47, G:0.00, T:0.28
Consensus pattern (12 bp):
CCTCCTCAAATC
Found at i:62109140 original size:15 final size:14
Alignment explanation
Indices: 62109100--62109144 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 14
62109090 ATCTCAACAT
*
62109100 CTCAAATTTTCCTC
1 CTCAAATTCTCCTC
62109114 CTCAAA-TC-CCTC
1 CTCAAATTCTCCTC
62109126 CTCAAA-TCT-CTC
1 CTCAAATTCTCCTC
62109138 CTCAAAT
1 CTCAAAT
62109145 CACTCAAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 21 0.75
13 1 0.04
14 6 0.21
ACGTcount: A:0.27, C:0.40, G:0.00, T:0.33
Consensus pattern (14 bp):
CTCAAATTCTCCTC
Found at i:62110290 original size:23 final size:23
Alignment explanation
Indices: 62110260--62110305 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
62110250 AGGTGCAGTG
62110260 AAAAAAGGGAAACCCTTGTTCAT
1 AAAAAAGGGAAACCCTTGTTCAT
*
62110283 AAAAAAGGGAAACGCTTGTTCAT
1 AAAAAAGGGAAACCCTTGTTCAT
62110306 GCCCTTAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (23 bp):
AAAAAAGGGAAACCCTTGTTCAT
Found at i:62115317 original size:23 final size:23
Alignment explanation
Indices: 62115290--62115355 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 23
62115280 TCAATCCATA
* *
62115290 AGATCTTACAGTTTCAGCTTGTC
1 AGATCTTACTGTTTCAGCTCGTC
62115313 AGATCTTACTGTTTCAGCTCGTC
1 AGATCTTACTGTTTCAGCTCGTC
*
62115336 AGAGCTTACTGTTTCAGCTC
1 AGATCTTACTGTTTCAGCTC
62115356 AATAAAGCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATCTTACTGTTTCAGCTCGTC
Found at i:62115364 original size:23 final size:23
Alignment explanation
Indices: 62115294--62115370 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
62115284 TCCATAAGAT
* ** * *
62115294 CTTACAGTTTCAGCTTGTCAGAT
1 CTTACTGTTTCAGCTCATCAAAG
* *
62115317 CTTACTGTTTCAGCTCGTCAGAG
1 CTTACTGTTTCAGCTCATCAAAG
62115340 CTTACTGTTTCAGCTCAAT-AAAG
1 CTTACTGTTTCAGCTC-ATCAAAG
62115363 CTTACTGT
1 CTTACTGT
62115371 CCATCAGCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 47 0.98
24 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (23 bp):
CTTACTGTTTCAGCTCATCAAAG
Found at i:62119801 original size:79 final size:80
Alignment explanation
Indices: 62119641--62119863 Score: 292
Period size: 79 Copynumber: 2.8 Consensus size: 80
62119631 TCGAATGATG
* * * *
62119641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
*
62119705 TGTGCGAGTTACTAAA
65 GGTGCGAGTTACTAAA
*
62119721 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCAT
62119783 TGGTGCGAGTTACTAAA
64 TGGTGCGAGTTACTAAA
* * * * *
62119800 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
62119864 TGAACGAGTA
Statistics
Matches: 126, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 1 0.01
79 69 0.55
80 48 0.38
81 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
GTGCGAGTTACTAAA
Found at i:62119872 original size:40 final size:40
Alignment explanation
Indices: 62119641--62119865 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
62119631 TCGAATGATG
* * *
62119641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
62119681 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62119721 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62119761 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62119800 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
62119841 -CCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62119866 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62119884 original size:119 final size:120
Alignment explanation
Indices: 62119641--62119872 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
62119631 TCGAATGATG
* *
62119641 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
**
62119706 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAT
* * **
62119761 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
*
62119823 TTGTGCGAGTTACTATAA-CC-GAGCTATG-TCCCGAAGGCATTTGAACGAGT
64 TTGTGCGAGTTACTA-AATCCGGA-CTAAGAT-CCGAAGGCATTTGAACGAGT
62119873 AGCTATATCC
Statistics
Matches: 98, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
118 4 0.04
119 75 0.77
120 19 0.19
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAT
Found at i:62119887 original size:79 final size:78
Alignment explanation
Indices: 62119648--62119898 Score: 271
Period size: 79 Copynumber: 3.2 Consensus size: 78
62119638 ATGTCCGGGC
* *
62119648 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGG-CTAAG-TCCCGAAGGCATTTGTGCG
*
62119711 AGTTACTAAATCCGGAC
63 AGTTACTAAATCCGG-T
*
62119728 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCC-GGCTAAGTCCCGAAGGCATTTGTGCG
62119790 AGTTACTAAATCCGGGT
63 AGTTACTAAATCC-GGT
* * **
62119807 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG-GCTAAGTCCCGAAGGCATTTGTGCGAG
*
62119872 -TAGCTATATCCGGT
65 TTA-CTAAATCCGGT
* *
62119886 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
62119899 TACGTGATTC
Statistics
Matches: 148, Mismatches: 12, Indels: 23
0.81 0.07 0.13
Matches are distributed among these distances:
78 2 0.01
79 82 0.55
80 54 0.36
81 10 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGT
TACTAAATCCGGT
Found at i:62124847 original size:39 final size:39
Alignment explanation
Indices: 62124749--62124860 Score: 143
Period size: 39 Copynumber: 2.8 Consensus size: 39
62124739 TAACCACAAG
* * * ** **
62124749 CACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTG
1 CACAAATGCCTTCGGGTCTTAGCCCGGATAT-AAAACTCA
62124789 CACAAATGCCTTCGGGTCTTAGCCCGGATATAAAACTCA
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAAAACTCA
*
62124828 CACGAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAA
62124861 TCATTAGCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 36 0.56
40 28 0.44
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (39 bp):
CACAAATGCCTTCGGGTCTTAGCCCGGATATAAAACTCA
Found at i:62132920 original size:39 final size:39
Alignment explanation
Indices: 62132821--62132933 Score: 154
Period size: 39 Copynumber: 2.9 Consensus size: 39
62132811 ATAACCACAA
* * * ** *
62132821 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT-AAAACTC
62132861 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAAACTC
*
62132900 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
62132934 TCATTAGCAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 37 0.56
40 29 0.44
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAAACTC
Found at i:62140815 original size:33 final size:33
Alignment explanation
Indices: 62140755--62140820 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
62140745 CTTGGGTCCA
* * *
62140755 CTCTGCTACTGTATAGGGCTAAAGCCCAGACTG
1 CTCTGCTACTGAATAAGGCTAAAGCCCAAACTG
* **
62140788 CTCTGTTACTGAATAAGGCTACGGCCCAAACTG
1 CTCTGCTACTGAATAAGGCTAAAGCCCAAACTG
62140821 TTTTGCATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (33 bp):
CTCTGCTACTGAATAAGGCTAAAGCCCAAACTG
Found at i:62141435 original size:27 final size:27
Alignment explanation
Indices: 62141403--62141466 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
62141393 CTGTGGAATG
62141403 GGTTTTTGAAAA-TTTTTCAAAAAATT
1 GGTTTTTGAAAAGTTTTTCAAAAAATT
* * * **
62141429 GGATTTTCAAAAGTTTTTCTAAACCTT
1 GGTTTTTGAAAAGTTTTTCAAAAAATT
62141456 GGTTTTTGAAA
1 GGTTTTTGAAA
62141467 GAGATGATTT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (27 bp):
GGTTTTTGAAAAGTTTTTCAAAAAATT
Found at i:62151057 original size:33 final size:34
Alignment explanation
Indices: 62151020--62151088 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 34
62151010 GTATCAGTAG
*
62151020 GGCCTAAGCCCATATCAGTAAC-GTGGCAATCTA
1 GGCCTAAGCCCATATCAGTAACAGTAGCAATCTA
* * *
62151053 GGCCTTAGCCCATTTCAGTAACAGTAGCAGTCTA
1 GGCCTAAGCCCATATCAGTAACAGTAGCAATCTA
62151087 GG
1 GG
62151089 TTTTATCCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 20 0.65
34 11 0.35
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (34 bp):
GGCCTAAGCCCATATCAGTAACAGTAGCAATCTA
Found at i:62151099 original size:34 final size:34
Alignment explanation
Indices: 62151026--62151147 Score: 120
Period size: 34 Copynumber: 3.6 Consensus size: 34
62151016 GTAGGGCCTA
* * * **
62151026 AGCCCATATCAGTAAC-GTGGCAATCTAGGCCTT
1 AGCCCATTTCAGTAACAGTAGCAGTCTAGGTTTT
62151059 AGCCCATTTCAGTAACAGTAGCAGTCTAGGTTTT
1 AGCCCATTTCAGTAACAGTAGCAGTCTAGGTTTT
* * * * * *
62151093 ATCCCATTTTAGTAATAGTAATCAGTTTGGGTTTT
1 AGCCCATTTCAGTAACAGT-AGCAGTCTAGGTTTT
*
62151128 AGCCCATTTCAGTAATAGTA
1 AGCCCATTTCAGTAACAGTA
62151148 ATCAGTGTAG
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
33 15 0.20
34 30 0.41
35 29 0.39
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (34 bp):
AGCCCATTTCAGTAACAGTAGCAGTCTAGGTTTT
Found at i:62151134 original size:35 final size:35
Alignment explanation
Indices: 62151057--62151153 Score: 133
Period size: 35 Copynumber: 2.8 Consensus size: 35
62151047 AATCTAGGCC
* *
62151057 TTAGCCCATTTCAGTAACAGT-AGCAGTCTAGGTT
1 TTAGCCCATTTCAGTAATAGTAATCAGTCTAGGTT
* * * *
62151091 TTATCCCATTTTAGTAATAGTAATCAGTTTGGGTT
1 TTAGCCCATTTCAGTAATAGTAATCAGTCTAGGTT
62151126 TTAGCCCATTTCAGTAATAGTAATCAGT
1 TTAGCCCATTTCAGTAATAGTAATCAGT
62151154 GTAGTAACCA
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
34 18 0.33
35 36 0.67
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (35 bp):
TTAGCCCATTTCAGTAATAGTAATCAGTCTAGGTT
Found at i:62151625 original size:27 final size:27
Alignment explanation
Indices: 62151591--62151718 Score: 193
Period size: 27 Copynumber: 4.7 Consensus size: 27
62151581 GGGTATTTCG
*
62151591 GTCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
62151618 GTCTTTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
** *
62151645 ACCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
62151672 GTCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
62151699 GTCATTTTATCACATGAGGG
1 GTCATTTTATCACATAAGGG
62151719 TTCAGGTACG
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:62153081 original size:12 final size:12
Alignment explanation
Indices: 62153041--62153091 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
62153031 CCCTTGATTT
62153041 CCTCCTACAATC
1 CCTCCTACAATC
*
62153053 TCTCCT-CATATC
1 CCTCCTACA-ATC
*
62153065 TCTCCT-CAACTC
1 CCTCCTACAA-TC
62153077 CCTCCTACAATC
1 CCTCCTACAATC
62153089 CCT
1 CCT
62153092 TCATGACCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 3 0.09
12 28 0.82
13 3 0.09
ACGTcount: A:0.20, C:0.49, G:0.00, T:0.31
Consensus pattern (12 bp):
CCTCCTACAATC
Found at i:62156095 original size:50 final size:49
Alignment explanation
Indices: 62155973--62156148 Score: 217
Period size: 50 Copynumber: 3.5 Consensus size: 49
62155963 TGAGGTCGCA
* * * * *
62155973 TGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACG
* ** * *
62156024 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTTATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* *
62156074 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
62156123 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
62156149 TGCCTACCAG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 29 0.27
50 45 0.42
51 33 0.31
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:62156157 original size:49 final size:50
Alignment explanation
Indices: 62155965--62156161 Score: 216
Period size: 50 Copynumber: 3.9 Consensus size: 50
62155955 ATCTATTGTG
* * * *
62155965 AGGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * * **
62156016 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* ** *
62156066 AGGTTATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
62156116 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCCTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
62156162 GCTTTGGCTA
Statistics
Matches: 121, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
49 39 0.32
50 45 0.37
51 37 0.31
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:62156160 original size:99 final size:101
Alignment explanation
Indices: 62155973--62156160 Score: 263
Period size: 99 Copynumber: 1.9 Consensus size: 101
62155963 TGAGGTCGCA
* * * *
62155973 TGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTCGATCACATGTGTAGTACTAAG
** *
62156038 TGCAGGCTACTACGTGTATCAGATGGTTAGGTTATG
66 TGCAGGCTACTACGCCTACCAGATGGTTAGGTTATG
* * *
62156074 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTCGATCACATGTGTAGTACTAAG
*
62156137 TGCAGGCTACTATGCCTACCAGAT
66 TGCAGGCTACTACGCCTACCAGAT
62156161 AGCTTTGGCT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
99 38 0.50
100 2 0.03
101 36 0.47
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTCGATCACATGTGTAGTACTAAG
TGCAGGCTACTACGCCTACCAGATGGTTAGGTTATG
Found at i:62158908 original size:16 final size:15
Alignment explanation
Indices: 62158870--62158908 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
62158860 TGGATTCTCG
*
62158870 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
62158885 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
62158900 TATTCTTGG
1 TA-TCTTGG
62158909 CCTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:62161804 original size:50 final size:51
Alignment explanation
Indices: 62161675--62161809 Score: 182
Period size: 51 Copynumber: 2.7 Consensus size: 51
62161665 ATCTATTGTG
* * *
62161675 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTT
* * * * **
62161726 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTT
62161776 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
62161810 TGCCTAGCAG
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 34 0.47
51 39 0.53
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTT
Found at i:62161821 original size:50 final size:51
Alignment explanation
Indices: 62161675--62161822 Score: 190
Period size: 50 Copynumber: 2.9 Consensus size: 51
62161665 ATCTATTGTG
* *
62161675 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTT
* * * * * **
62161726 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTT
* *
62161776 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCCTAGCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
62161823 GCTTTGGCTA
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 42 0.52
51 39 0.48
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTT
Found at i:62168345 original size:40 final size:39
Alignment explanation
Indices: 62168218--62168347 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
62168208 ATGCTGGAAA
* *
62168218 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
62168258 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
62168298 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
62168338 TTATATCCGG
1 TTATATCCGG
62168348 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:62171344 original size:20 final size:20
Alignment explanation
Indices: 62171319--62171364 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
62171309 AACAGGGGTC
62171319 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
62171339 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
62171359 ACACGC
1 ACACGC
62171365 TCATGTGGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.13, C:0.28, G:0.37, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:62171371 original size:20 final size:20
Alignment explanation
Indices: 62171319--62171372 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
62171309 AACAGGGGTC
*
62171319 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCATGTGGTTTGGG
*
62171339 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCATGTGGTTTGGG
*
62171359 ACACGCTCATGTGG
1 ACACGCCCATGTGG
62171373 GCAGGTTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
ACACGCCCATGTGGTTTGGG
Found at i:62175687 original size:22 final size:23
Alignment explanation
Indices: 62175652--62175694 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
62175642 TTTGAAATAA
**
62175652 GTTTTATTTTAAAAC-TCATCAT
1 GTTTTATTCAAAAACATCATCAT
62175674 GTTTTATTCAAAAACATCATC
1 GTTTTATTCAAAAACATCATC
62175695 TTTATACCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.44
Consensus pattern (23 bp):
GTTTTATTCAAAAACATCATCAT
Found at i:62188585 original size:49 final size:49
Alignment explanation
Indices: 62188531--62188711 Score: 227
Period size: 49 Copynumber: 3.7 Consensus size: 49
62188521 CTGGTACGCA
* * *
62188531 TAGTAGCCTGCACATAGTACTATACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * ** *
62188580 TAGTAGCCTACAGTTAGTACTACACACATGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** * *
62188629 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
*
62188679 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
62188712 TCACAATAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
49 71 0.63
50 42 0.37
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:62190362 original size:13 final size:13
Alignment explanation
Indices: 62190344--62190369 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62190334 AAGAAATATA
62190344 ACACGGGCGTGTC
1 ACACGGGCGTGTC
62190357 ACACGGGCGTGTC
1 ACACGGGCGTGTC
62190370 CCTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:62192807 original size:25 final size:25
Alignment explanation
Indices: 62192768--62192863 Score: 147
Period size: 25 Copynumber: 3.8 Consensus size: 25
62192758 TAAGCTTGTT
* *
62192768 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
*
62192793 AATTTGCTCTCAATATTTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
62192818 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
* *
62192843 AATTTGCCCTTATTATTTCCG
1 AATTTGCTCTTAATATTTCCG
62192864 AATAAGTTAC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (25 bp):
AATTTGCTCTTAATATTTCCGGTTA
Found at i:62193749 original size:45 final size:45
Alignment explanation
Indices: 62193685--62193949 Score: 358
Period size: 45 Copynumber: 6.0 Consensus size: 45
62193675 TATCGTACAG
* * * *
62193685 TACTATTCGGGCTTTTGAGCCTAACAGGCTATAATTCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
62193730 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATTCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
62193775 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
62193820 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** * * *
62193865 TACTATTTAGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
62193910 TGA-TA-TCAGG-CTTCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
62193950 ATGAATTCTG
Statistics
Matches: 205, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
42 12 0.06
43 16 0.08
44 4 0.02
45 172 0.84
46 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:62197033 original size:27 final size:27
Alignment explanation
Indices: 62197002--62197075 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 27
62196992 ATTTAAACCC
62197002 TAGGGGTATATT-GGTAATTTTGCTCCT
1 TAGGGGTA-ATTCGGTAATTTTGCTCCT
*
62197029 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAA-TTCGGTAATTTTGCTCCT
62197057 TAGGGGTAATTCGGTAATT
1 TAGGGGTAATTCGGTAATT
62197076 CTACGTAATT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
26 1 0.02
27 20 0.45
28 23 0.52
ACGTcount: A:0.20, C:0.09, G:0.27, T:0.43
Consensus pattern (27 bp):
TAGGGGTAATTCGGTAATTTTGCTCCT
Found at i:62198729 original size:20 final size:20
Alignment explanation
Indices: 62198706--62198743 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
62198696 CACATCCAAA
*
62198706 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
62198726 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
62198744 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:62203342 original size:25 final size:25
Alignment explanation
Indices: 62203307--62203377 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
62203297 TAAGCTTGTT
* *
62203307 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
62203332 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
* *
62203357 AATTTGCCCTTATTATTTCCG
1 AATTTGCTCTTAATATTTCCG
62203378 AATAAGTTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.48
Consensus pattern (25 bp):
AATTTGCTCTTAATATTTCCGGTTA
Found at i:62204300 original size:45 final size:45
Alignment explanation
Indices: 62204195--62204504 Score: 432
Period size: 45 Copynumber: 7.0 Consensus size: 45
62204185 AATCGTACAG
*
62204195 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAAT-CCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
62204239 TACTATTCGGGCCTTTGAACATAGCAGGCTATAATGCCAGTAAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
62204284 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
62204329 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
62204374 TACTATTCAAGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAGA
1 TACTATTC-GGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
62204420 TACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
62204465 TGA-TA-TCGAG-CTTCGAGCCTAGCAGGC-AAAATACCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
62204505 ATGAATTCAG
Statistics
Matches: 243, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
42 11 0.05
43 17 0.07
44 36 0.15
45 135 0.56
46 44 0.18
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:62204440 original size:91 final size:90
Alignment explanation
Indices: 62204195--62204504 Score: 432
Period size: 91 Copynumber: 3.5 Consensus size: 90
62204185 AATCGTACAG
* *
62204195 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAAT-CCGGTGATATACTATTCGGGCCTTTGAAC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCCTTTGAGC
* * *
62204259 ATAGCAGGCTATAATGCCAGTAAGA
66 CTAGCAGGCTATAATGCCGGTGAGA
*
62204284 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATACTATTCGGGCCTTTGAGC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCCTTTGAGC
62204349 CTAGCAGGCTATAATGCCGGTGAGA
66 CTAGCAGGCTATAATGCCGGTGAGA
* * * *
62204374 TACTATTCAAGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAGATACTATTCAGGCCTTCGAG
1 TACTATTC-GGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCCTTTGAG
*
62204439 CCTAGCAGGCTATAATGCCGGTGAAA
65 CCTAGCAGGCTATAATGCCGGTGAGA
* * * *
62204465 TGA-TA-TCGAG-CTTCGAGCCTAGCAGGC-AAAATACCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
62204505 ATGAATTCAG
Statistics
Matches: 200, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
87 10 0.05
88 16 0.08
89 36 0.18
90 58 0.29
91 79 0.40
92 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (90 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCCTTTGAGC
CTAGCAGGCTATAATGCCGGTGAGA
Found at i:62204440 original size:136 final size:134
Alignment explanation
Indices: 62204195--62204504 Score: 430
Period size: 136 Copynumber: 2.3 Consensus size: 134
62204185 AATCGTACAG
* *
62204195 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATCCGGTGATATACTATTCGGGCCTTTGAACA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATCCGGTGAGATACTATTCAGGCCTTTGAACA
* *
62204260 TAGCAGGCTATAATGCCAGTAAGATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGAT
66 TAGCAGGCTATAATGCCAGTAAGATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGAT
*
62204325 GAGA
131 GAAA
*
62204329 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCAAGGCCTTTGAG
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAAT-CCGGTGAGATACTATTC-AGGCCTTTGAA
* * * *
62204394 CCTAGCAGGCTATAATGTCGGTGAGATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCG
64 CATAGCAGGCTATAATGCCAGTAAGATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCG
*
62204459 GTGAAA
129 ATGAAA
* * *
62204465 TGA-TA-TCGAG-CTTCGAGCCTAGCAGGC-AAAATACCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAAT-CCGGTGA
62204505 ATGAATTCAG
Statistics
Matches: 158, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
133 11 0.07
134 51 0.32
135 20 0.13
136 75 0.47
137 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (134 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATCCGGTGAGATACTATTCAGGCCTTTGAACA
TAGCAGGCTATAATGCCAGTAAGATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGAT
GAAA
Found at i:62204697 original size:20 final size:20
Alignment explanation
Indices: 62204674--62204753 Score: 55
Period size: 20 Copynumber: 4.2 Consensus size: 20
62204664 TCATAAGTGT
62204674 ATAATGTGATACATATGTGA
1 ATAATGTGATACATATGTGA
* *
62204694 ATAAATGT--TATATGATTTGA
1 AT-AATGTGATACAT-ATGTGA
* * *
62204714 AT--TG-AAT-CATAAGTGT
1 ATAATGTGATACATATGTGA
62204730 ATAATGTGATACATATGTGA
1 ATAATGTGATACATATGTGA
62204750 ATAA
1 ATAA
62204754 ATGTTATATC
Statistics
Matches: 43, Mismatches: 9, Indels: 16
0.63 0.13 0.24
Matches are distributed among these distances:
16 5 0.12
17 4 0.09
18 3 0.07
19 6 0.14
20 20 0.47
21 5 0.12
ACGTcount: A:0.41, C:0.04, G:0.17, T:0.38
Consensus pattern (20 bp):
ATAATGTGATACATATGTGA
Found at i:62204714 original size:56 final size:56
Alignment explanation
Indices: 62204648--62204762 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
62204638 TATATGTGAG
62204648 TATGATTTGAATTGAATCATAAGTGTATAATGTGATACATATGTGAATAAATGTTA
1 TATGATTTGAATTGAATCATAAGTGTATAATGTGATACATATGTGAATAAATGTTA
62204704 TATGATTTGAATTGAATCATAAGTGTATAATGTGATACATATGTGAATAAATGTTA
1 TATGATTTGAATTGAATCATAAGTGTATAATGTGATACATATGTGAATAAATGTTA
62204760 TAT
1 TAT
62204763 CTATATTTAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.40
Consensus pattern (56 bp):
TATGATTTGAATTGAATCATAAGTGTATAATGTGATACATATGTGAATAAATGTTA
Found at i:62225995 original size:20 final size:20
Alignment explanation
Indices: 62225972--62226012 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
62225962 TAAAACTTGT
62225972 ATAA-CTATCAACAAACATTC
1 ATAATCTATCAACAAAC-TTC
*
62225992 ATAATCTATCAAGAAACTTC
1 ATAATCTATCAACAAACTTC
62226012 A
1 A
62226013 AAAGACATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAATCTATCAACAAACTTC
Found at i:62229730 original size:40 final size:40
Alignment explanation
Indices: 62229686--62229872 Score: 275
Period size: 40 Copynumber: 4.7 Consensus size: 40
62229676 CCAACCCAAT
* * ** *
62229686 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* * *
62229726 TGCCTTCGAGACTTAACCCGAAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
62229766 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
62229806 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
62229846 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
62229873 TCCTCAATTG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:62235604 original size:44 final size:43
Alignment explanation
Indices: 62235521--62235604 Score: 96
Period size: 44 Copynumber: 1.9 Consensus size: 43
62235511 GATTCCTATA
* * * *
62235521 TCTGTTATTGTGTAAGAGCACGTCTGGGACATTGGCATCGACT
1 TCTGTTATTGTGTAAGACCACGTCTGAGACATCGACATCGACT
* * *
62235564 TCTGTTTTATGTGTAAGACCATGTTTGAGACATCGACATCG
1 TCTGTTAT-TGTGTAAGACCACGTCTGAGACATCGACATCG
62235605 TATTTGATTC
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
43 7 0.21
44 26 0.79
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (43 bp):
TCTGTTATTGTGTAAGACCACGTCTGAGACATCGACATCGACT
Found at i:62237335 original size:40 final size:40
Alignment explanation
Indices: 62237298--62237390 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 40
62237288 GCTACTCGTT
* *
62237298 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
62237338 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
62237378 CAAATGCCTTCGG
1 CAAATGCCTTCGG
62237391 ATCTTAGTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:62245867 original size:46 final size:46
Alignment explanation
Indices: 62245773--62245901 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
62245763 TGTAACCTGC
* * * * *
62245773 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
62245819 CCATGAGTGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62245865 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
62245902 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62248613 original size:35 final size:35
Alignment explanation
Indices: 62248562--62248638 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
62248552 GAGTCAAAAA
*
62248562 ACCATTTTCATAGTGTCACTCTGTAGAGCCAATAG
1 ACCATTTCCATAGTGTCACTCTGTAGAGCCAATAG
* * *
62248597 ACCATTTCCATGGTGTCACTCTGTAGAGCTAGTAG
1 ACCATTTCCATAGTGTCACTCTGTAGAGCCAATAG
62248632 ACCATTT
1 ACCATTT
62248639 TTGTAATGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (35 bp):
ACCATTTCCATAGTGTCACTCTGTAGAGCCAATAG
Found at i:62248659 original size:35 final size:35
Alignment explanation
Indices: 62248620--62248708 Score: 135
Period size: 35 Copynumber: 2.5 Consensus size: 35
62248610 TGTCACTCTG
62248620 TAGAGCTAGTAGACCATTTTTGTAATGTCGCTT-CA
1 TAGAGCTAGTAGACCATTTTTGTAATGTCG-TTCCA
* *
62248655 TAGAGCCAGTAGACCATTTTTGTGATGTCGTTCCA
1 TAGAGCTAGTAGACCATTTTTGTAATGTCGTTCCA
*
62248690 TAGAGATAGTAGACCATTT
1 TAGAGCTAGTAGACCATTT
62248709 CCCAACCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
34 2 0.04
35 47 0.96
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (35 bp):
TAGAGCTAGTAGACCATTTTTGTAATGTCGTTCCA
Found at i:62251310 original size:14 final size:15
Alignment explanation
Indices: 62251291--62251320 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
62251281 ATCTCTCTTC
62251291 TTTTTT-CTTTTTTT
1 TTTTTTGCTTTTTTT
62251305 TTTTTTGCTTTTTTT
1 TTTTTTGCTTTTTTT
62251320 T
1 T
62251321 CTATTCTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (15 bp):
TTTTTTGCTTTTTTT
Found at i:62253250 original size:55 final size:55
Alignment explanation
Indices: 62253125--62253255 Score: 178
Period size: 55 Copynumber: 2.4 Consensus size: 55
62253115 CCCTTAGCCT
* * * *
62253125 GTGTGCAACACTGACTTTAAAACACGGCCATGACACACGCCCTTGTGGCCTGCCC
1 GTGTACAAGACTGACTTTAAAACACGGCCATGACAAACGCCCTTGTGGCCTACCC
*
62253180 GTGTACAAGATTGACTTTAAAACACGGCCATGACAAACG-CCTCTGTGGCCTACCC
1 GTGTACAAGACTGACTTTAAAACACGGCCATGACAAACGCCCT-TGTGGCCTACCC
62253235 GTGTACTAA-ACTGAC-TTAAAA
1 GTGTAC-AAGACTGACTTTAAAA
62253256 TTTTAAGTGC
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
54 9 0.13
55 57 0.84
56 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (55 bp):
GTGTACAAGACTGACTTTAAAACACGGCCATGACAAACGCCCTTGTGGCCTACCC
Found at i:62254174 original size:47 final size:47
Alignment explanation
Indices: 62254065--62254282 Score: 220
Period size: 47 Copynumber: 4.7 Consensus size: 47
62254055 TAGACGTTTT
* * * *
62254065 GATGCATGTCTCAGACATGTCTTACACTAGCA-TGA-C-TCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATC-GAGGCC
62254109 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCATCGAGGCC
* * * *
62254156 GATGCATATCCCAAACATGTCTTACACTGGCACACATC-TCTG-CGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATC-GAGGCC
* *
62254202 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT--ATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCATCGA-GGCC
*
62254250 GATGCATGTCCCATACATGTCTTACACTGGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
62254283 ACAAGAAATC
Statistics
Matches: 148, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
44 29 0.20
45 3 0.02
46 27 0.18
47 64 0.43
48 24 0.16
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAGGCC
Found at i:62254254 original size:94 final size:90
Alignment explanation
Indices: 62254012--62254285 Score: 277
Period size: 94 Copynumber: 2.9 Consensus size: 90
62254002 TGGGATAAGT
* * * * ** *
62254012 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGCATAGACGTTTTGATGCATGTCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACT--CATATA-G-GCTGATGCATGTCCC
* * *
62254077 AGACATGTCTTACACTAGCATGAC-TCTTA
62 AAACATGTCTTACACTGGCA-CACATCTTA
* *
62254106 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-TCATCATCGAGGCCGATGCATATCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACTCAT-AT--AGGCTGATGCATGTCCC
*
62254168 AAACATGTCTTACACTGGCACACATCTCTGC
62 AAACATGTCTTACACTGGCACACATCT-T-A
*
62254199 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATATGGCTGATGCATGTCCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCAT-ATA-GGCTGATGCATGTCCCAA
62254264 ACATGTCTTACACTGGCACACA
64 ACATGTCTTACACTGGCACACA
62254286 AGAAATCCGA
Statistics
Matches: 152, Mismatches: 17, Indels: 22
0.80 0.09 0.12
Matches are distributed among these distances:
90 5 0.03
91 32 0.21
92 14 0.09
93 23 0.15
94 59 0.39
95 19 0.12
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (90 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATAGGCTGATGCATGTCCCAAAC
ATGTCTTACACTGGCACACATCTTA
Found at i:62260553 original size:18 final size:18
Alignment explanation
Indices: 62260530--62260564 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
62260520 AAAGACCTTG
*
62260530 TGGTCACACACGCCCGTC
1 TGGTCACACACACCCGTC
62260548 TGGTCACACACACCCGT
1 TGGTCACACACACCCGT
62260565 GTGGCTTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.43, G:0.20, T:0.17
Consensus pattern (18 bp):
TGGTCACACACACCCGTC
Found at i:62260697 original size:54 final size:53
Alignment explanation
Indices: 62260605--62260724 Score: 134
Period size: 54 Copynumber: 2.2 Consensus size: 53
62260595 CGTGTGCAAT
* * * * *
62260605 ACTGACTTTAAAACATGGCTATGACACACGCCCGTGTGGCTTGCCCATGTAC-AA
1 ACTGAC-TT-AAACACGGCCATGACACACGCCCATGTGGCCTACCCATGTACTAA
* *
62260659 CACTGACATTAAACACGGCCATGACACACGCCTATGTGGCCTACCCGTGTACTAA
1 -ACTGAC-TTAAACACGGCCATGACACACGCCCATGTGGCCTACCCATGTACTAA
62260714 ACTGACTTAAA
1 ACTGACTTAAA
62260725 ATTTTAAGTG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 5 0.09
54 41 0.73
55 10 0.18
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (53 bp):
ACTGACTTAAACACGGCCATGACACACGCCCATGTGGCCTACCCATGTACTAA
Found at i:62261641 original size:47 final size:48
Alignment explanation
Indices: 62261578--62261751 Score: 182
Period size: 47 Copynumber: 3.7 Consensus size: 48
62261568 ATGACTCTTA
*
62261578 GCCGATACATGTCCCAGACA-CATCTTACACTGGCTA-TCATCATCGAC
1 GCCGATGCATGTCCCAGACATCATCTTACACTGGC-ACTCATCATCGAC
* * * *
62261625 GCTGATGCATGTCCCAGACATGA-CTTACACTAGCACTCATCA-CTAC
1 GCCGATGCATGTCCCAGACATCATCTTACACTGGCACTCATCATCGAC
* * **
62261671 GCCAATGCCATGTCCCAGACATGC-TCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-CATCTTACACTGGCACTCATCATCGAC
*
62261719 GCCGATGCATGTCCCAGACAT-GTCTTACACTGG
1 GCCGATGCATGTCCCAGACATCATCTTACACTGG
62261752 TACACACGAA
Statistics
Matches: 106, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
46 20 0.19
47 62 0.58
48 24 0.23
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACATCATCTTACACTGGCACTCATCATCGAC
Found at i:62261728 original size:94 final size:91
Alignment explanation
Indices: 62261537--62261749 Score: 245
Period size: 94 Copynumber: 2.3 Consensus size: 91
62261527 TATACGTACT
* * * *
62261537 GATGCATGTCTCAGACATGTCTTACACTAGCATGACTCTTAGCCGATACATGTCCCAGACACATC
1 GATGCATGTCCCAGACATGTCTTACACTAGCATCACTCCTAGCCAATACATGTCCCAGACACATC
* *
62261602 TTACACTGGCTATCATCATCGACGCT
66 TTACACTGGCTATCATAATCGACGCC
* *
62261628 GATGCATGTCCCAGACATGACTTACACTAGCACTCA-TCACTACGCCAATGCCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCA-TCACTC-CTA-GCCAAT-ACATGTCCCAGACA
**
62261692 TGC-TCTTACACTGGC-ACTCATAAT-GTGGCC
62 --CATCTTACACTGGCTA-TCATAATCGACGCC
62261722 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
62261750 GGTACACACG
Statistics
Matches: 104, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
91 32 0.31
92 4 0.04
93 5 0.05
94 44 0.42
95 18 0.17
96 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATCACTCCTAGCCAATACATGTCCCAGACACATC
TTACACTGGCTATCATAATCGACGCC
Found at i:62268391 original size:18 final size:18
Alignment explanation
Indices: 62268368--62268404 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
62268358 AATTATCTAT
62268368 CAGCTTCAACCATGAACA
1 CAGCTTCAACCATGAACA
62268386 CAGCTTCAACCATGAACA
1 CAGCTTCAACCATGAACA
62268404 C
1 C
62268405 TGACATTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.35, G:0.11, T:0.16
Consensus pattern (18 bp):
CAGCTTCAACCATGAACA
Found at i:62278862 original size:21 final size:21
Alignment explanation
Indices: 62278836--62278876 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
62278826 ATAGCTGATG
62278836 AGGATATGTTAGAAAAAAAAA
1 AGGATATGTTAGAAAAAAAAA
62278857 AGGATATGTTAGAAAAAAAA
1 AGGATATGTTAGAAAAAAAA
62278877 CATATTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.20
Consensus pattern (21 bp):
AGGATATGTTAGAAAAAAAAA
Found at i:62280711 original size:10 final size:10
Alignment explanation
Indices: 62280698--62280747 Score: 57
Period size: 10 Copynumber: 4.8 Consensus size: 10
62280688 TGCAAATATG
62280698 TCAAAATTAA
1 TCAAAATTAA
62280708 TCAAAATTAA
1 TCAAAATTAA
62280718 TCAAAATTTGATA
1 TCAAAA-TT-A-A
62280731 T-AAAATTAA
1 TCAAAATTAA
*
62280740 TTAAAATT
1 TCAAAATT
62280748 CAACATGTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
9 2 0.06
10 23 0.64
11 4 0.11
12 5 0.14
13 2 0.06
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:62283378 original size:46 final size:45
Alignment explanation
Indices: 62283295--62283411 Score: 157
Period size: 46 Copynumber: 2.5 Consensus size: 45
62283285 AAGTCGAAGC
62283295 CATGTCCCAGACATGGTCTTACACTGACAATCATCTCGTA-GCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGAC-ATCATCTCG-AGGCCAATG
*
62283342 CATGTCCCAGACATGTCTTACACTGGC-TCACTTCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGACATCA--TCTCGAGGCCAATG
*
62283388 TATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
62283412 ATCACTCGTC
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
44 3 0.05
45 1 0.02
46 47 0.72
47 14 0.22
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGACATCATCTCGAGGCCAATG
Found at i:62287548 original size:18 final size:18
Alignment explanation
Indices: 62287521--62287559 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
62287511 TCCTTTGATA
*
62287521 GGGTTTGCATAAATATAT
1 GGGTTCGCATAAATATAT
**
62287539 GGGTTCGCATACCTATAT
1 GGGTTCGCATAAATATAT
62287557 GGG
1 GGG
62287560 CTCACACAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (18 bp):
GGGTTCGCATAAATATAT
Found at i:62290090 original size:17 final size:18
Alignment explanation
Indices: 62290067--62290114 Score: 73
Period size: 17 Copynumber: 2.8 Consensus size: 18
62290057 CTATAAGATA
62290067 AATATTAA-ATTAAATTT
1 AATATTAATATTAAATTT
*
62290084 GATATTAATATTAAATTT
1 AATATTAATATTAAATTT
62290102 AAT-TTAATATTAA
1 AATATTAATATTAA
62290115 GATAATCACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 17 0.61
18 11 0.39
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
AATATTAATATTAAATTT
Found at i:62290093 original size:23 final size:23
Alignment explanation
Indices: 62290067--62290114 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
62290057 CTATAAGATA
*
62290067 AATATTAAATTAAATTTGATATT
1 AATATTAAATTAAATTTAATATT
*
62290090 AATATTAAATTTAATTTAATATT
1 AATATTAAATTAAATTTAATATT
62290113 AA
1 AA
62290115 GATAATCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
AATATTAAATTAAATTTAATATT
Found at i:62295223 original size:14 final size:15
Alignment explanation
Indices: 62295196--62295229 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
62295186 TCACTCTCAT
62295196 TTTCTTTTTCTTTCA
1 TTTCTTTTTCTTTCA
*
62295211 TTTCTTTTT-TTTCT
1 TTTCTTTTTCTTTCA
62295225 TTTCT
1 TTTCT
62295230 CAATTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTCTTTTTCTTTCA
Found at i:62296744 original size:41 final size:41
Alignment explanation
Indices: 62296645--62296762 Score: 139
Period size: 41 Copynumber: 2.9 Consensus size: 41
62296635 GAAAATGCCA
* *
62296645 CAAAAGGTCTGGAATTAGCGGTGTTTGTGAGAAAAACGCTG
1 CAAAAGGTCTGGAATTAGCGGTGTTTGTGAGAAAAACACCG
* * *
62296686 AAAAAGGT-TTGACATTAGCGGCGTTTGTGAGAAAAACACCG
1 CAAAAGGTCTGGA-ATTAGCGGTGTTTGTGAGAAAAACACCG
* * * *
62296727 CAAAATGTCTGGTATTAGCGGTGTTTATGACAAAAA
1 CAAAAGGTCTGGAATTAGCGGTGTTTGTGAGAAAAA
62296763 TGCCACACAA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
40 3 0.05
41 58 0.92
42 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (41 bp):
CAAAAGGTCTGGAATTAGCGGTGTTTGTGAGAAAAACACCG
Found at i:62297585 original size:14 final size:14
Alignment explanation
Indices: 62297482--62297649 Score: 63
Period size: 14 Copynumber: 11.7 Consensus size: 14
62297472 TTCATTTTGT
*
62297482 TTTAGGATTTAGAG
1 TTTAGGGTTTAGAG
* **
62297496 TCTATTGTTTAGAG
1 TTTAGGGTTTAGAG
*
62297510 TTTAGGGTGTATGA-
1 TTTAGGGTTTA-GAG
*
62297524 TTTAGGGCTTATG-G
1 TTTAGGGTTTA-GAG
* *
62297538 TTTTATGGTTTTATAG
1 -TTTA-GGGTTTAGAG
* *
62297554 TTTAGGATTTTAGTG
1 TTTAGG-GTTTAGAG
* *
62297569 TTTAGAGTTTAGGG
1 TTTAGGGTTTAGAG
* * *
62297583 TTTATGATTTATAG
1 TTTAGGGTTTAGAG
* * *
62297597 TTTAAGGTTTTGGG
1 TTTAGGGTTTAGAG
*
62297611 TTTTA-GGTTTAGTG
1 -TTTAGGGTTTAGAG
* *
62297625 TTTAAGGTTTAGTG
1 TTTAGGGTTTAGAG
62297639 TTTAAGGGTTT
1 TTT-AGGGTTT
62297650 TGATAAAACC
Statistics
Matches: 114, Mismatches: 31, Indels: 17
0.70 0.19 0.10
Matches are distributed among these distances:
13 4 0.04
14 73 0.64
15 31 0.27
16 6 0.05
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.51
Consensus pattern (14 bp):
TTTAGGGTTTAGAG
Found at i:62297606 original size:28 final size:28
Alignment explanation
Indices: 62297553--62297642 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
62297543 TGGTTTTATA
* *
62297553 GTTTAGGATTT-TAGTGTTTAGAGTTTAGG
1 GTTTATGATTTATAGT-TTAAG-GTTTAGG
*
62297582 GTTTATGATTTATAGTTTAAGGTTTTGG
1 GTTTATGATTTATAGTTTAAGGTTTAGG
* *
62297610 GTTT-TAGGTTTAGT-GTTTAAGGTTTAGT
1 GTTTAT-GATTTA-TAGTTTAAGGTTTAGG
62297638 GTTTA
1 GTTTA
62297643 AGGGTTTTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
27 1 0.02
28 31 0.61
29 15 0.29
30 4 0.08
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (28 bp):
GTTTATGATTTATAGTTTAAGGTTTAGG
Found at i:62298285 original size:13 final size:13
Alignment explanation
Indices: 62298267--62298291 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62298257 AATGAAATCT
62298267 CTTCTTTTTCCCC
1 CTTCTTTTTCCCC
62298280 CTTCTTTTTCCC
1 CTTCTTTTTCCC
62298292 AAACCATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (13 bp):
CTTCTTTTTCCCC
Found at i:62299410 original size:23 final size:23
Alignment explanation
Indices: 62299384--62300781 Score: 916
Period size: 23 Copynumber: 61.4 Consensus size: 23
62299374 TTAATTTATT
*
62299384 AAGTGTTTAAATGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
**
62299407 AAGTGTTTAAATATTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* *
62299430 AAGTGTTTAAGTGCTGCAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
** *
62299453 AAGTGTTTAGTTGCTGGAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* * *
62299476 -AGATGTTT-TATCACTGT-AATTT
1 AAG-TGTTTAAAT-GCTGTAAATTG
* * * *
62299498 AGGTGTATAAATGTTGTTAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62299521 -AGATG-TTAAAGTGCTGCAAATTG
1 AAG-TGTTTAAA-TGCTGTAAATTG
62299544 AAGTGTTTAAATGCTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62299567 AAGTGTTTAAATGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* *
62299590 AAGTGTTTAAGTGCTGCAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
**
62299613 AAGTGTTTAGTTGCTAG-AAATTG
1 AAGTGTTTAAATGCT-GTAAATTG
62299636 -AGATGCTTT--ATCGCTGT-AATTG
1 AAG-TG-TTTAAAT-GCTGTAAATTG
* * ** *
62299658 AGGTGTATAAATATTGTTAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62299681 -AGATG-TTAAAGTGCTGCAAATTG
1 AAG-TGTTTAAA-TGCTGTAAATTG
* *
62299704 AAGTGTATAAATGCTATAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62299727 AAGTGTTTAAATGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* * * *
62299750 AATTATTTAAGTGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
** *
62299773 AAGTGTTTAGTTGCTGGAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* * *
62299796 -AGATGTTTTATTGCTAT-AATTG
1 AAG-TGTTTAAATGCTGTAAATTG
* * * *
62299818 AGGTGTATAAATGTTGTTAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* * *
62299841 -AGAT-TTTAATGTGATGCAAATTG
1 AAG-TGTTTAA-ATGCTGTAAATTG
62299864 AAGTGTTTAAATGCTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* **
62299887 AAGTG-TTAAAGTACTACAAATTG
1 AAGTGTTTAAA-TGCTGTAAATTG
*
62299910 AAGTGTTTAAATGCAGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62299933 AAGTGTTTAAATGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* *
62299956 AAGTGTTTAAGTGCTGCAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
** *
62299979 AAGTGTTTAGTTGCTGGAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62300002 -AGATGTTT-TATCGCTGT-AATTG
1 AAG-TGTTTAAAT-GCTGTAAATTG
* * * *
62300024 AGGTGTATAAATGTTGTTAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62300047 -AGATG-TTAAAGTGCTGCAAATTG
1 AAG-TGTTTAAA-TGCTGTAAATTG
*
62300070 AAGTGTTTAAATGCTATAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62300093 AAGTG-TTAAAGTGCTATAAATTG
1 AAGTGTTTAAA-TGCTGTAAATTG
* *
62300116 AAGTGTGTAAATGCTATAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62300139 AAGTGTTTAAATGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* * *
62300162 AATTGTTTAAGTGCTGCAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* ** * *
62300185 AAGTATTTAGTTGTTGAAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* *
62300208 -AGATGTTT-TATCGCTAT-AATTG
1 AAG-TGTTTAAAT-GCTGTAAATTG
* * * *
62300230 AGGTGTATAAATGTTGTTAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* *
62300253 -AGATG-TTAAAGTGATGCAAATTG
1 AAG-TGTTTAAA-TGCTGTAAATTG
* *
62300276 AAGTGTTCAAATGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62300299 AAGTG-TTAAAGTGCTGCAAATTG
1 AAGTGTTTAAA-TGCTGTAAATTG
*
62300322 AAGTGTTTAAATGCTCTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62300345 AAGTGTTTAAATGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* * * *
62300368 AATTGTTTAAGTGCTGCAAAGTG
1 AAGTGTTTAAATGCTGTAAATTG
* ** * *
62300391 AAGTATTTAGTTGTTGGAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* *
62300414 -AGATGTTT-TATCACTGT-AATTG
1 AAG-TGTTTAAAT-GCTGTAAATTG
* * * * *
62300436 AGGTGTATAAATGTTTTTAATTG
1 AAGTGTTTAAATGCTGTAAATTG
**
62300459 -AGATG-TTAAACTGCTACAAATTG
1 AAG-TGTTTAAA-TGCTGTAAATTG
62300482 AAGTGTTTAAATGCTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62300505 AAGTG-TTAAAGTGCTGCAAATTG
1 AAGTGTTTAAA-TGCTGTAAATTG
*
62300528 AAGTGTTT-AA----GTAGATTTG
1 AAGTGTTTAAATGCTGTA-AATTG
*
62300547 -AGTGTTTAAATGTTGTAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* *
62300569 AA-TAGTTTAAGTGCTGCAAATTG
1 AAGT-GTTTAAATGCTGTAAATTG
* ** * *
62300592 AAGTATTTAGTTGTTGGAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
* *
62300615 -AGATGTTT-TATCACTGT-AATTG
1 AAG-TGTTTAAAT-GCTGTAAATTG
* * ** *
62300637 -AGGGTATAAATATTGTTAATTG
1 AAGTGTTTAAATGCTGTAAATTG
*
62300659 -AGATG-TTAAAGTGCTGCAAATTG
1 AAG-TGTTTAAA-TGCTGTAAATTG
* * *
62300682 AAGTGCTTAAATGTTGTAAATTA
1 AAGTGTTTAAATGCTGTAAATTG
*
62300705 AAGTG-TTAAAGTGCTATAAATTG
1 AAGTGTTTAAA-TGCTGTAAATTG
* *
62300728 AAGTGTTTAAATGTTGTAAATTA
1 AAGTGTTTAAATGCTGTAAATTG
* **
62300751 AAGTGTTTAAGTGCTACAAATTG
1 AAGTGTTTAAATGCTGTAAATTG
62300774 AA-TGTTTA
1 AAGTGTTTA
62300782 GTTGCTGGTT
Statistics
Matches: 1073, Mismatches: 219, Indels: 167
0.74 0.15 0.11
Matches are distributed among these distances:
18 9 0.01
19 6 0.01
21 9 0.01
22 177 0.16
23 799 0.74
24 73 0.07
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (23 bp):
AAGTGTTTAAATGCTGTAAATTG
Found at i:62299655 original size:160 final size:160
Alignment explanation
Indices: 62299384--62300193 Score: 888
Period size: 160 Copynumber: 5.1 Consensus size: 160
62299374 TTAATTTATT
* *
62299384 AAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAATATTGTAAATTGAAGTGTTTAAGTGCTGCAA
1 AAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAA
* *
62299449 ATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAATTTAGGTGTATAAATGTTG
66 ATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTG
62299514 TTAATTGAGATGTTAAAGTGCTGCAAATTG
131 TTAATTGAGATGTTAAAGTGCTGCAAATTG
62299544 AAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAA
1 AAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAA
* * *
62299609 ATTGAAGTGTTTAGTTGCTAGAAATTGAGATGCTTTATCGCTGTAATTGAGGTGTATAAATATTG
66 ATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTG
62299674 TTAATTGAGATGTTAAAGTGCTGCAAATTG
131 TTAATTGAGATGTTAAAGTGCTGCAAATTG
* * * * * *
62299704 AAGTGTATAAATGCTATAAATTGAAGTGTTTAAATGTTGTAAATTGAATTATTTAAGTGTTGTAA
1 AAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAA
* *
62299769 ATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATTGCTATAATTGAGGTGTATAAATGTTG
66 ATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTG
* * *
62299834 TTAATTGAGATTTTAATGTGATGCAAATTG
131 TTAATTGAGATGTTAAAGTGCTGCAAATTG
** * * *
62299864 AAGTGTTTAAATGCTGTAAATTGAAGTG-TTAAA-GTACTACAAATTGAAGTGTTTAAATGCAGT
1 AAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGT--TGTAAATTGAAGTGTTTAAGTGCTGC
** * * * * * * **
62299927 AAATTGAAGTGTTTAAATGTTGTAAATTGA-AGTGTTTAAGT-GCTGCAAATTGAAGTGTTTAGT
64 AAATTGAAGTGTTTAGTTGCTGGAAATTGAGA-TGTTTTA-TCGCTG-TAATTGAGGTGTATAAA
* ** ** *
62299990 TGCTGGAAATTGAGATGTTTTA-TCGCTG-TAATTG
126 TGTTGTTAATTGAGATGTTAAAGT-GCTGCAAATTG
* * * * * * * **
62300024 AGGTGTATAAATGTTGTTAATTG-AGATG-TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTAT
1 AAGTGTTTAAATGCTGTAAATTGAAG-TGTTTAAA-TGTTGTAAATTGAAGTGTTTAAGTGCTGC
* ** ** * * *
62300087 AAATTGAAGTGTTAAAG-TGCTATAAATTGA-AGTGTGTAAAT-GCTATAAATTGAAGTGTTTAA
64 AAATTGAAGTGTT-TAGTTGCTGGAAATTGAGA-TGT-TTTATCGCTGT-AATTGAGGTGTATAA
* *
62300149 ATGTTGTAAATTGA-ATTGTTTAAGTGCTGCAAATTG
125 ATGTTGTTAATTGAGA-TGTTAAAGTGCTGCAAATTG
*
62300185 AAGTATTTA
1 AAGTGTTTA
62300194 GTTGTTGAAA
Statistics
Matches: 561, Mismatches: 74, Indels: 29
0.84 0.11 0.04
Matches are distributed among these distances:
158 2 0.00
159 9 0.02
160 502 0.89
161 47 0.08
162 1 0.00
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.40
Consensus pattern (160 bp):
AAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAA
ATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTG
TTAATTGAGATGTTAAAGTGCTGCAAATTG
Found at i:62299750 original size:206 final size:203
Alignment explanation
Indices: 62299538--62300760 Score: 1563
Period size: 206 Copynumber: 6.0 Consensus size: 203
62299528 AAAGTGCTGC
* * * * ** * *
62299538 AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGA-AGTGTTTAAGT
1 AAATTGAATTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGGAAATTGAGA-TGTTTTA-T
* * ** * * * * * *
62299602 GCTGCAAATTGAAGTGTTTAGTTGCTAG-AAATTGAGATGCTTTATCGCTG-TAATTGAGGTGTA
64 GCTG-AAATTGAGGTGTATAAATG-TTGTTAATTGAGATG-TTAAT-GCTGCAAATTGAAGTGTT
** * *
62299665 TAAATATTGTTAATTG-AGATGTTAAAGTGCTGCAAATTGAAGTGTATAAATGCTATAAATTGAA
125 TAAATGCTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTATAAATTGAA
62299729 GTGTTTAAATGTTGT
189 GTGTTTAAATGTTGT
* * * * *
62299744 AAATTGAATTATTTAAGTGTTGTAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATTG
1 AAATTGAATTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGGAAATTGAGATGTTTTA-TG
* *
62299809 CT-ATAATTGAGGTGTATAAATGTTGTTAATTGAGATTTTAATGTGATGCAAATTGAAGTGTTTA
65 CTGA-AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAA--TGCTGCAAATTGAAGTGTTTA
* *
62299873 AATGCTGTAAATTGAAGTGTTAAAGTACTACAAATTGAAGTGTTTAAATGC-AGTAAATTGAAGT
127 AATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTA-TAAATTGAAGT
62299937 GTTTAAATGTTGT
191 GTTTAAATGTTGT
* * *
62299950 AAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCG
1 AAATTGAATTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGGAAATTGAGATGTTTTAT-G
*
62300015 CTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAA
65 CTGAAATTGAGGTGTATAAATGTTGTTAATTGAGATGTT-AA-TGCTGCAAATTGAAGTGTTTAA
* ** *
62300080 ATGCTATAAATTGAAGTGTTAAAGTGCTATAAATTGAAGTGTGTAAATGCTATAAATTGAAGTGT
128 ATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTATAAATTGAAGTGT
62300145 TTAAATGTTGT
193 TTAAATGTTGT
*
62300156 AAATTGAATTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGAAAATTGAGATGTTTTATCG
1 AAATTGAATTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGGAAATTGAGATGTTTTAT-G
* *
62300221 CT-ATAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGATGCAAATTGAAGTGTTCA
65 CTGA-AATTGAGGTGTATAAATGTTGTTAATTGAGATGTT-AA-TGCTGCAAATTGAAGTGTTTA
* *
62300285 AATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTCTAAATTGAAGTG
127 AATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTATAAATTGAAGTG
62300350 TTTAAATGTTGT
192 TTTAAATGTTGT
* *
62300362 AAATTGAATTGTTTAAGTGCTGCAAAGTGAAGTATTTAGTTGTTGGAAATTGAGATGTTTTATCA
1 AAATTGAATTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGGAAATTGAGATGTTTTAT-G
* * *
62300427 CTGTAATTGAGGTGTATAAATGTTTTTAATTGAGATGTTAAACTGCTACAAATTGAAGTGTTTAA
65 CTGAAATTGAGGTGTATAAATGTTGTTAATTGAGATGTT-AA-TGCTGCAAATTGAAGTGTTTAA
* *
62300492 ATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTT-AA-G-TA-GATTTG-AGTGT
128 ATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTATAAATTGAAGTGT
62300552 TTAAATGTTGT
193 TTAAATGTTGT
* *
62300563 AAATTGAATAGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGGAAATTGAGATGTTTTATCA
1 AAATTGAATTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGGAAATTGAGATGTTTTAT-G
* * *
62300628 CTGTAATTGAGG-GTATAAATATTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGCTTAA
65 CTGAAATTGAGGTGTATAAATGTTGTTAATTGAGATGTT-AA-TGCTGCAAATTGAAGTGTTTAA
* * ** * * *
62300692 ATGTTGTAAATTAAAGTGTTAAAGTGCTATAAATTGAAGTGTTTAAATGTTGTAAATTAAAGTGT
128 ATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTATAAATTGAAGTGT
62300757 TTAA
193 TTAA
62300761 GTGCTACAAA
Statistics
Matches: 918, Mismatches: 80, Indels: 39
0.89 0.08 0.04
Matches are distributed among these distances:
200 87 0.09
201 93 0.10
202 5 0.01
203 2 0.00
204 10 0.01
205 39 0.04
206 676 0.74
207 6 0.01
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.39
Consensus pattern (203 bp):
AAATTGAATTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGTTGGAAATTGAGATGTTTTATGC
TGAAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAATGCTGCAAATTGAAGTGTTTAAATG
CTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTATAAATTGAAGTGTTTA
AATGTTGT
Found at i:62301504 original size:43 final size:43
Alignment explanation
Indices: 62301456--62301750 Score: 214
Period size: 43 Copynumber: 6.9 Consensus size: 43
62301446 GAAGCGTTTT
* * * **
62301456 TGGGAAAAGAGCCACTAAAAGTCATGTTTTTTAGCGGCGCTTA
1 TGGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCAATTA
* * * *
62301499 TGGGAAAAGCGCCGCTAAAGGTCATGTTTTTTAGTGGCATTTA
1 TGGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCAATTA
* * * *
62301542 TGGGGAAAGCGCTACTAAAGGTCATGATCTTTAGCGGCAATTG
1 TGGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCAATTA
** * ** *
62301585 TGGCTAAAGCGCCACTAAAGGTCATG-TCTTTAGCGACGTTTG
1 TGGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCAATTA
* ** * * ** ** *
62301627 TGGGTAAAGCGCTGCTAAAGGTCATATTCTATAATGGCCTTTG
1 TGGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCAATTA
* * * ** *
62301670 TGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAACGGCGTTTG
1 TGGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCAATTA
* ** ** *
62301713 TGGAAAAAGTACTGCTAAAGGTCATGTTCTATAGCGGC
1 TGGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGC
62301751 CTTTTTCCAC
Statistics
Matches: 212, Mismatches: 39, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 35 0.17
43 177 0.83
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
TGGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGCAATTA
Found at i:62301644 original size:128 final size:129
Alignment explanation
Indices: 62301461--62301695 Score: 310
Period size: 128 Copynumber: 1.8 Consensus size: 129
62301451 GTTTTTGGGA
* * *
62301461 AAAGAGCCACTAAAAGTCATGTTTTTTAGCGGCGCTTATGGGAAAAGCGCCGCTAAAGGTCATGT
1 AAAGAGCCACTAAAAGTCATGTTCTTTAGCGACGCTTATGGGAAAAGCGCCGCTAAAGGTCATAT
* * * * *
62301526 TTTTTAGTGGCATTTATGGGGAAAGCGCTACTAAAGGTCATGATCTTTAGCGGCAATTGTGGCT
66 TCTATAATGGCATTTATGGGAAAAGCGCCACTAAAGGTCATGATCTTTAGCGGCAATTGTGGCT
* * * * * *
62301590 AAAGCGCCACTAAAGGTCATG-TCTTTAGCGACGTTTGTGGGTAAAGCGCTGCTAAAGGTCATAT
1 AAAGAGCCACTAAAAGTCATGTTCTTTAGCGACGCTTATGGGAAAAGCGCCGCTAAAGGTCATAT
* * *
62301654 TCTATAATGGCCTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
66 TCTATAATGGCATTTATGGGAAAAGCGCCACTAAAGGTCATG
62301696 TTCTATAACG
Statistics
Matches: 89, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
128 70 0.79
129 19 0.21
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (129 bp):
AAAGAGCCACTAAAAGTCATGTTCTTTAGCGACGCTTATGGGAAAAGCGCCGCTAAAGGTCATAT
TCTATAATGGCATTTATGGGAAAAGCGCCACTAAAGGTCATGATCTTTAGCGGCAATTGTGGCT
Done.