Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 201 of 438
Found at i:62301731 original size:128 final size:129
Alignment explanation
Indices: 62301467--62301748 Score: 305
Period size: 128 Copynumber: 2.2 Consensus size: 129
62301457 GGGAAAAGAG
* * * * * *
62301467 CCACTAAAAGTCATGTTTTTTAGCGGCGCTTATGGGAAAAGCGCCGCTAAAGGTCATGTTTTTTA
1 CCACTAAAGGTCATGTTCTTTAGCGACGCTTATGGGAAAAGCGCCGCTAAAGGTCATATTCTATA
* * * * * ** *
62301532 GTGGCATTTATGGGGAAAGCGCTACTAAAGGTCATGATCTTTAGCGGCAATTGTGGCTAAAGCG
66 ATGGCATTTATGGGAAAAGCGCCACTAAAGGTCATGATCTATAACGGCAATTGTGGAAAAAGCA
* * * *
62301596 CCACTAAAGGTCATG-TCTTTAGCGACGTTTGTGGGTAAAGCGCTGCTAAAGGTCATATTCTATA
1 CCACTAAAGGTCATGTTCTTTAGCGACGCTTATGGGAAAAGCGCCGCTAAAGGTCATATTCTATA
* * * * ** *
62301660 ATGGCCTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTATAACGGCGTTTGTGGAAAAAGTA
66 ATGGCATTTATGGGAAAAGCGCCACTAAAGGTCATGATCTATAACGGCAATTGTGGAAAAAGCA
** *
62301724 CTGCTAAAGGTCATGTTCTATAGCG
1 CCACTAAAGGTCATGTTCTTTAGCG
62301749 GCCTTTTTCC
Statistics
Matches: 124, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
128 102 0.82
129 22 0.18
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (129 bp):
CCACTAAAGGTCATGTTCTTTAGCGACGCTTATGGGAAAAGCGCCGCTAAAGGTCATATTCTATA
ATGGCATTTATGGGAAAAGCGCCACTAAAGGTCATGATCTATAACGGCAATTGTGGAAAAAGCA
Found at i:62301743 original size:86 final size:86
Alignment explanation
Indices: 62301449--62301754 Score: 310
Period size: 86 Copynumber: 3.6 Consensus size: 86
62301439 ACCTGTTGAA
* * ** * * * *
62301449 GCGTTTTTGGGAAAAGAGCCACTAAAAGTCATGTTTTTTAGCGGCGC-TTATGGGAAAAGCGCCG
1 GCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGTTCTATAGCGGC-CTTTGTGGGAAAAGCGCCG
* *
62301513 CTAAAGGTCATGTTTTTTAGTG
65 CTAAAGGTCATGTTCTTTAGCG
* * * * * * ** ** *
62301535 GCATTTATGGGGAAAGCGCTACTAAAGGTCATGATCTTTAGCGGCAATTGTGGCTAAAGCGCCAC
1 GCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGTTCTATAGCGGCCTTTGTGGGAAAAGCGCCGC
62301600 TAAAGGTCATG-TCTTTAGCG
66 TAAAGGTCATGTTCTTTAGCG
* * * **
62301620 ACGTTTGTGGGTAAAGCGCTGCTAAAGGTCATATTCTATAATGGCCTTTGTGGGAAAAGCGCCGC
1 GCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGTTCTATAGCGGCCTTTGTGGGAAAAGCGCCGC
* *
62301685 TAAAGGTCATGTTCTATAACG
66 TAAAGGTCATGTTCTTTAGCG
* **
62301706 GCGTTTGTGGAAAAAGTACTGCTAAAGGTCATGTTCTATAGCGGCCTTT
1 GCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGTTCTATAGCGGCCTTT
62301755 TTCCACATAA
Statistics
Matches: 178, Mismatches: 40, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
85 68 0.38
86 110 0.62
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (86 bp):
GCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGTTCTATAGCGGCCTTTGTGGGAAAAGCGCCGC
TAAAGGTCATGTTCTTTAGCG
Found at i:62302956 original size:12 final size:12
Alignment explanation
Indices: 62302939--62302972 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
62302929 CATAATTTAG
62302939 ACATATTAATAA
1 ACATATTAATAA
62302951 ACATATTAATAA
1 ACATATTAATAA
62302963 ACATATTAAT
1 ACATATTAAT
62302973 TCATTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (12 bp):
ACATATTAATAA
Found at i:62304395 original size:27 final size:27
Alignment explanation
Indices: 62304337--62304447 Score: 109
Period size: 27 Copynumber: 4.1 Consensus size: 27
62304327 AGCATGGCTG
* * *
62304337 CCAGAACATATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
62304363 CTAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
62304390 CCAGAATAGAT-ATATGTGGTAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * *
62304417 CCAGATCAAATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
62304444 CCAG
1 CCAG
62304448 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 13 0.19
27 55 0.80
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:62305853 original size:24 final size:24
Alignment explanation
Indices: 62305820--62305925 Score: 135
Period size: 24 Copynumber: 4.4 Consensus size: 24
62305810 GCCGGCCAAC
62305820 TCTTGCTCCTTGATCAGCTCCTAAA
1 TCTT-CTCCTTGATCAGCTCCTAAA
*
62305845 TCTTCTCCTTTATCAGCTCCTAAA
1 TCTTCTCCTTGATCAGCTCCTAAA
* *
62305869 TCCTCTCCCTT-ATCAGCTCCTATA
1 TCTTCT-CCTTGATCAGCTCCTAAA
*
62305893 TCCTCTCCCTTG-TCAGCTCCTAAA
1 TCTTCT-CCTTGATCAGCTCCTAAA
62305917 TCTTCTCCT
1 TCTTCTCCT
62305926 GACAGCCTTT
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
23 3 0.04
24 63 0.85
25 8 0.11
ACGTcount: A:0.17, C:0.38, G:0.07, T:0.39
Consensus pattern (24 bp):
TCTTCTCCTTGATCAGCTCCTAAA
Found at i:62306655 original size:18 final size:18
Alignment explanation
Indices: 62306584--62306648 Score: 105
Period size: 18 Copynumber: 3.6 Consensus size: 18
62306574 GGCCCATTGT
62306584 AGTAACAGTAAATAGTGC
1 AGTAACAGTAAATAGTGC
*
62306602 AGTAACAGT-AATCAATGC
1 AGTAACAGTAAAT-AGTGC
62306620 AGTAACAGTAAATAGTGC
1 AGTAACAGTAAATAGTGC
62306638 AGTAACAGTAA
1 AGTAACAGTAA
62306649 TCAGTGCTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.07
18 37 0.86
19 3 0.07
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.22
Consensus pattern (18 bp):
AGTAACAGTAAATAGTGC
Found at i:62307002 original size:27 final size:27
Alignment explanation
Indices: 62306972--62307165 Score: 214
Period size: 27 Copynumber: 7.2 Consensus size: 27
62306962 ACATACATCA
62306972 CATAAGGGCAAAACTGTCATTTTACCT
1 CATAAGGGCAAAACTGTCATTTTACCT
*
62306999 CATAAGGGCAAAATTGTCATTTTACCT
1 CATAAGGGCAAAACTGTCATTTTACCT
* * * *
62307026 CACAAGGGCAAAATTGTCATTTTATCA
1 CATAAGGGCAAAACTGTCATTTTACCT
** * *
62307053 CATAAGGGCAAAACAATCATTTTGCCA
1 CATAAGGGCAAAACTGTCATTTTACCT
62307080 CATAAGGGCAAAACCT-TCATTTTACCT
1 CATAAGGGCAAAA-CTGTCATTTTACCT
* * *
62307107 CATAAGGGAAAAATCAT-T-ATTTTATCA
1 CATAAGGGCAAAA-C-TGTCATTTTACCT
* *
62307134 CATAAGGGCAAAACAGTCATTTTATCT
1 CATAAGGGCAAAACTGTCATTTTACCT
62307161 CATAA
1 CATAA
62307166 TGGTTTAGGT
Statistics
Matches: 143, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
26 2 0.01
27 138 0.97
28 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (27 bp):
CATAAGGGCAAAACTGTCATTTTACCT
Found at i:62307038 original size:54 final size:54
Alignment explanation
Indices: 62306970--62307165 Score: 241
Period size: 54 Copynumber: 3.6 Consensus size: 54
62306960 ACACATACAT
**
62306970 CACATAAGGGCAAAACTGTCATTTTACCTCATAAGGGCAAAATTGTCATTTTAC
1 CACATAAGGGCAAAACTGTCATTTTACCTCATAAGGGCAAAATAATCATTTTAC
* * * * * * *
62307024 CTCACAAGGGCAAAATTGTCATTTTATCACATAAGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAACTGTCATTTTACCTCATAAGGGCAAAATAATCATTTTAC
* * * *
62307078 CACATAAGGGCAAAACCT-TCATTTTACCTCATAAGGGAAAAATCATTATTTTAT
1 CACATAAGGGCAAAA-CTGTCATTTTACCTCATAAGGGCAAAATAATCATTTTAC
* *
62307132 CACATAAGGGCAAAACAGTCATTTTATCTCATAA
1 CACATAAGGGCAAAACTGTCATTTTACCTCATAA
62307166 TGGTTTAGGT
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 116 0.98
55 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (54 bp):
CACATAAGGGCAAAACTGTCATTTTACCTCATAAGGGCAAAATAATCATTTTAC
Found at i:62307061 original size:81 final size:81
Alignment explanation
Indices: 62306968--62307165 Score: 281
Period size: 81 Copynumber: 2.4 Consensus size: 81
62306958 ATACACATAC
* *
62306968 ATCACATAAGGGCAAAACTGTCATTTTACCTCATAAGGGCAAAA-TTGTCATTTTACCTCACAAG
1 ATCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACCT-TCATTTTACCTCACAAG
* **
62307032 GGCAAAATTGTCATTTT
65 GGAAAAATCATCATTTT
* * * *
62307049 ATCACATAAGGGCAAAACAATCATTTTGCCACATAAGGGCAAAACCTTCATTTTACCTCATAAGG
1 ATCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACCTTCATTTTACCTCACAAGG
*
62307114 GAAAAATCATTATTTT
66 GAAAAATCATCATTTT
*
62307130 ATCACATAAGGGCAAAACAGTCATTTTATCTCATAA
1 ATCACATAAGGGCAAAACAGTCATTTTACCTCATAA
62307166 TGGTTTAGGT
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 101 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (81 bp):
ATCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACCTTCATTTTACCTCACAAGG
GAAAAATCATCATTTT
Found at i:62310843 original size:40 final size:40
Alignment explanation
Indices: 62310717--62310904 Score: 164
Period size: 40 Copynumber: 4.7 Consensus size: 40
62310707 AAATTGAATG
* * ** * *
62310717 ATATCCGGGCTAAGCCCCGAAGACAAATATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAATT
* * ***
62310757 ATATCCGGGTTAAGACCTGAAGGCAATTT-TGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTTATGCTAGTAATT
* *
62310797 ACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTATGCTAGTAATT
* ** * **
62310837 ATATCCGGGCCAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAATT
*
62310877 AAATCCGGGCTAAGACCCGAAGGCATTT
1 ATATCCGGGCTAAGACCCGAAGGCATTT
62310905 GTGCAAATCG
Statistics
Matches: 115, Mismatches: 29, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
39 7 0.06
40 103 0.90
41 5 0.04
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAATT
Found at i:62310852 original size:80 final size:80
Alignment explanation
Indices: 62310719--62310904 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 80
62310709 ATTGAATGAT
* * ** * ** *
62310719 ATCCGGGCTAAGCCCCGAAGACAAATATGCTGGAAATTATATCCGGGTTAAGACCTGAAGGCAAT
1 ATCCGGGCTAAGACCCGAGGACATTTATGCTAGAAATTATATCCGGGCCAAGACCCGAAGGC-AT
* * *
62310784 T-TTGCTAGTGGCTAC
65 TCGTGCAAGTGGCTAA
* *
62310799 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCCAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAGGACATTTATGCTAGAAATTATATCCGGGCCAAGACCCGAAGGCATT
* *
62310864 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGCTAA
62310879 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGACCCG-AGGACATTT
62310905 GTGCAAATCG
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 83 0.93
81 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAGGACATTTATGCTAGAAATTATATCCGGGCCAAGACCCGAAGGCATT
CGTGCAAGTGGCTAA
Found at i:62310923 original size:40 final size:40
Alignment explanation
Indices: 62310837--62310940 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
62310827 GCTAGTAATT
* * * *
62310837 ATATCCGGGCCAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
* *
62310877 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
* * *
62310917 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
62310941 CTTGGTGCGG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTG
Found at i:62314182 original size:23 final size:23
Alignment explanation
Indices: 62314156--62314211 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
62314146 AAAACTAAAT
*
62314156 AATATTAAAAATAACAACGGAAC
1 AATATTAAAAATAACAACGAAAC
* **
62314179 AATA-TAATAAATAGCTGCGAAAC
1 AATATTAA-AAATAACAACGAAAC
62314202 AATATTAAAA
1 AATATTAAAA
62314212 TAGTATTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
22 3 0.11
23 21 0.78
24 3 0.11
ACGTcount: A:0.59, C:0.11, G:0.09, T:0.21
Consensus pattern (23 bp):
AATATTAAAAATAACAACGAAAC
Found at i:62316226 original size:29 final size:28
Alignment explanation
Indices: 62316181--62316284 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 28
62316171 AATAGGTTCA
**
62316181 CCACAAAAACTTACCTTTCCAGAGTTTTG
1 CCACAAAGGCTTACCTTTCCA-AGTTTTG
* * *
62316210 CCACAAAGG-TTGTCCTTTTACAAG-TTCG
1 CCACAAAGGCTT-ACC-TTTCCAAGTTTTG
62316238 CCACAAAGGCTTACCTTTCCAAAGTTTTG
1 CCACAAAGGCTTACCTTTCC-AAGTTTTG
* * *
62316267 CCATAAAGGATAACCTTT
1 CCACAAAGGCTTACCTTT
62316285 TACTGGTGTT
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
27 4 0.07
28 19 0.32
29 31 0.53
30 5 0.08
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (28 bp):
CCACAAAGGCTTACCTTTCCAAGTTTTG
Found at i:62316262 original size:28 final size:28
Alignment explanation
Indices: 62316176--62316263 Score: 72
Period size: 28 Copynumber: 3.1 Consensus size: 28
62316166 CCTTTAATAG
* ** *
62316176 GTTCACCACAAAAACTTACCTTTCCAGA
1 GTTCGCCACAAAGGCTTACCTTTCCAAA
* * *
62316204 GTTTTGCCACAAAGG-TTGTCCTTT-TACAA
1 G-TTCGCCACAAAGGCTT-ACCTTTCCA-AA
62316233 GTTCGCCACAAAGGCTTACCTTTCCAAA
1 GTTCGCCACAAAGGCTTACCTTTCCAAA
62316261 GTT
1 GTT
62316264 TTGCCATAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
28 26 0.58
29 19 0.42
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (28 bp):
GTTCGCCACAAAGGCTTACCTTTCCAAA
Found at i:62316284 original size:57 final size:57
Alignment explanation
Indices: 62316176--62316287 Score: 152
Period size: 57 Copynumber: 2.0 Consensus size: 57
62316166 CCTTTAATAG
* * **
62316176 GTTCACCACAAAAACTTACCTTTCCAGAGTTTTGCCACAAAGGTTGTCCTTTTACAA
1 GTTCACCACAAAAACTTACCTTTCCAAAGTTTTGCCACAAAGGATAACCTTTTACAA
* ** *
62316233 GTTCGCCACAAAGGCTTACCTTTCCAAAGTTTTGCCATAAAGGATAACCTTTTAC
1 GTTCACCACAAAAACTTACCTTTCCAAAGTTTTGCCACAAAGGATAACCTTTTAC
62316288 TGGTGTTTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (57 bp):
GTTCACCACAAAAACTTACCTTTCCAAAGTTTTGCCACAAAGGATAACCTTTTACAA
Found at i:62316531 original size:53 final size:53
Alignment explanation
Indices: 62316396--62316534 Score: 215
Period size: 53 Copynumber: 2.6 Consensus size: 53
62316386 TTCCTTAAAT
* * *
62316396 TTTCCTATATGATGTCATAACCTACCAGTTACAGTCTTACACGATATGGTATTC
1 TTTCC-ATATGATGTCATAACCTACTAGTTACGGCCTTACACGATATGGTATTC
* *
62316450 TTTCCATATGATGTCATAACCCACTAGTTACGGCCTTACACGATATGGTCTTC
1 TTTCCATATGATGTCATAACCTACTAGTTACGGCCTTACACGATATGGTATTC
*
62316503 TTTCCATATGATGTCATAACCTAATAGTTACG
1 TTTCCATATGATGTCATAACCTACTAGTTACG
62316535 ATCTTATATG
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 73 0.94
54 5 0.06
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (53 bp):
TTTCCATATGATGTCATAACCTACTAGTTACGGCCTTACACGATATGGTATTC
Found at i:62316548 original size:53 final size:53
Alignment explanation
Indices: 62316396--62316554 Score: 212
Period size: 53 Copynumber: 3.0 Consensus size: 53
62316386 TTCCTTAAAT
* *
62316396 TTTCCTATATGATGTCATAACCTACCAGTTAC-AGTCTTACACGATATGGTATTC
1 TTTCC-ATATGATGTCATAACCTACTAGTTACGA-TCTTACACGATATGGTCTTC
* **
62316450 TTTCCATATGATGTCATAACCCACTAGTTACGGCCTTACACGATATGGTCTTC
1 TTTCCATATGATGTCATAACCTACTAGTTACGATCTTACACGATATGGTCTTC
* * * *
62316503 TTTCCATATGATGTCATAACCTAATAGTTACGATCTTATATGATATTGTCTT
1 TTTCCATATGATGTCATAACCTACTAGTTACGATCTTACACGATATGGTCTT
62316555 ATTTAGTGTC
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 87 0.95
54 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.38
Consensus pattern (53 bp):
TTTCCATATGATGTCATAACCTACTAGTTACGATCTTACACGATATGGTCTTC
Found at i:62319200 original size:49 final size:50
Alignment explanation
Indices: 62319137--62319265 Score: 174
Period size: 50 Copynumber: 2.6 Consensus size: 50
62319127 TCAAGTCGAT
62319137 GCCATGTCCCAGACATGGTCTTACACTGACTATCA-AAAT-CGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCG-GGCCGAC
* * * *
62319186 GCCATGTCCCAGACATGGTCTTACACT-ATCTCTCACATATCCGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATCCGGGCCGAC
*
62319236 GCCATGTCCCAGACATAGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
62319266 ACATCTCGTA
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
48 1 0.01
49 32 0.45
50 35 0.49
51 3 0.04
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.24
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCGGGCCGAC
Found at i:62319257 original size:50 final size:49
Alignment explanation
Indices: 62319085--62319265 Score: 183
Period size: 49 Copynumber: 3.7 Consensus size: 49
62319075 GGGTATAATA
** * * * *
62319085 CCGATGCCACATCCCAGGCATGGTCTTACACTGGCTCATC--TATC-AAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAAATCGAGG
*
62319132 TCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGG
* * * *
62319181 CCGACGCCATGTCCCAGACATGGTCTTACACT-ATCTCTCACATATCCG-TG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-AAAT-CGAGG
*
62319231 CCGATGCCATGTCCCAGACATAGTCTTACACTGAC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC
62319266 ACATCTCGTA
Statistics
Matches: 113, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
46 3 0.03
47 31 0.27
48 4 0.04
49 37 0.33
50 35 0.31
51 3 0.03
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGG
Found at i:62319289 original size:45 final size:47
Alignment explanation
Indices: 62319139--62319352 Score: 163
Period size: 46 Copynumber: 4.5 Consensus size: 47
62319129 AAGTCGATGC
* ** * *
62319139 CATGTCCCAGACATGGTCTTACACT-GACTATCAAAATCGAGGCCGACG
1 CATGTCCCAGACATAGTCTTACACTGGACTA-C-ATCTCGAGGCCAATG
* *** * * *
62319187 CCATGTCCCAGACATGGTCTTACACTATCTCTCACATATCCG-TGCCGATG
1 -CATGTCCCAGACATAGTCTTACACT-GGACT-ACATCT-CGAGGCCAATG
62319237 CCATGTCCCAGACATAGTCTTACACT-GAC-ACATCTCGTA-GCCAATG
1 -CATGTCCCAGACATAGTCTTACACTGGACTACATCTCG-AGGCCAATG
* * *
62319283 CATGTCCCAAACATA-TCTTACACTGGCCTACATCTTGAGGCCAATG
1 CATGTCCCAGACATAGTCTTACACTGGACTACATCTCGAGGCCAATG
*
62319329 CATGTCCTAGACAT-GTCTTACACT
1 CATGTCCCAGACATAGTCTTACACT
62319353 AGCTCTCGTC
Statistics
Matches: 140, Mismatches: 15, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
44 9 0.06
45 19 0.14
46 46 0.33
48 1 0.01
49 25 0.18
50 34 0.24
51 5 0.04
52 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATAGTCTTACACTGGACTACATCTCGAGGCCAATG
Found at i:62321277 original size:13 final size:14
Alignment explanation
Indices: 62321261--62321289 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
62321251 CCATATTCAA
62321261 ATTATACC-AAATC
1 ATTATACCAAAATC
62321274 ATTATACCAAAATC
1 ATTATACCAAAATC
62321288 AT
1 AT
62321290 CACATTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (14 bp):
ATTATACCAAAATC
Found at i:62322031 original size:16 final size:17
Alignment explanation
Indices: 62322010--62322064 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 17
62322000 GTTTGGCTCA
62322010 CTGTAATGGAATAAG-G
1 CTGTAATGGAATAAGAG
*
62322026 CTGTAATTGAAT-AGAG
1 CTGTAATGGAATAAGAG
*
62322042 CTGTAATGTAAT-AGAG
1 CTGTAATGGAATAAGAG
*
62322058 TTGTAAT
1 CTGTAAT
62322065 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 2 0.06
16 32 0.94
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.33
Consensus pattern (17 bp):
CTGTAATGGAATAAGAG
Found at i:62322360 original size:58 final size:58
Alignment explanation
Indices: 62322230--62322368 Score: 156
Period size: 58 Copynumber: 2.4 Consensus size: 58
62322220 TATTCTTATT
* * * *
62322230 AAATTTTAATA-AGATTATTATTAAAAATATTTTGATAAATATAATAAATAATTTAACC
1 AAATTTTAACATA-ATTATTATTAAAAATAATTTAATAAATATAATAAATAATTTAACA
* * * *
62322288 ATATTTTAACATAATTATTATTAAATATAATTTAATAAA-ATAATATATAATTTAATA
1 AAATTTTAACATAATTATTATTAAAAATAATTTAATAAATATAATAAATAATTTAACA
**
62322345 AAATTCTTAGTATAATTATTATTA
1 AAATT-TTAACATAATTATTATTA
62322369 TATGAATTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 19 0.28
58 48 0.71
59 1 0.01
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (58 bp):
AAATTTTAACATAATTATTATTAAAAATAATTTAATAAATATAATAAATAATTTAACA
Found at i:62329737 original size:40 final size:40
Alignment explanation
Indices: 62329660--62329877 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
62329650 AAACCAAGTA
* * *
62329660 CCTTCGGGATTTAG-CTGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
62329699 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62329739 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62329779 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
62329819 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
62329859 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62329878 TTATCATCCG
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.09
40 146 0.91
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62337247 original size:46 final size:46
Alignment explanation
Indices: 62337194--62337368 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
62337184 ATTTGGAGCA
62337194 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62337240 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
62337285 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62337333 CCCGAGCTCGTTGAGTTGAG-CCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62337369 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 19 0.17
46 47 0.42
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62337350 original size:93 final size:92
Alignment explanation
Indices: 62337191--62337360 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
62337181 AGGATTTGGA
* *
62337191 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62337256 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAG-CCGAGTTCGTGAGATGTAACTAG
*
62337284 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62337349 TGAGCCGAGTTC
66 TGAGCCGAGTTC
62337361 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 8 0.11
93 66 0.89
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGCCGAGTTCGTGAGATGTAACTAG
Found at i:62339488 original size:17 final size:18
Alignment explanation
Indices: 62339446--62339494 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
62339436 AGTTGAAAAG
62339446 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
62339465 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
62339482 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
62339495 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:62340380 original size:40 final size:40
Alignment explanation
Indices: 62340314--62340480 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62340304 AAATTGAATG
* * *
62340314 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
62340353 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62340393 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62340433 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62340473 ATATCCGG
1 ATATCCGG
62340481 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62347478 original size:17 final size:18
Alignment explanation
Indices: 62347436--62347484 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
62347426 AGTTGAAAAG
62347436 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
62347455 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
62347472 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
62347485 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:62348369 original size:40 final size:40
Alignment explanation
Indices: 62348303--62348469 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62348293 AAATTGAATG
* * *
62348303 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
62348342 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62348382 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62348422 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62348462 ATATCCGG
1 ATATCCGG
62348470 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62350423 original size:79 final size:81
Alignment explanation
Indices: 62350322--62350506 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
62350312 ACGACTCGCT
** * *
62350322 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
62350385 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
62350402 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
62350466 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
62350482 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62350507 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:62350506 original size:40 final size:39
Alignment explanation
Indices: 62350315--62350506 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
62350305 GGATATAACG
* ** * *
62350315 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
62350355 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
62350395 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
62350434 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
62350474 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
62350507 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:62355126 original size:46 final size:46
Alignment explanation
Indices: 62355076--62355251 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
62355066 TATTTGGGCA
62355076 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62355122 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
62355167 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62355215 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62355252 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62355231 original size:93 final size:93
Alignment explanation
Indices: 62355072--62355243 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
62355062 TGGATATTTG
* *
62355072 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
62355137 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
62355165 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
62355230 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
62355244 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:62358218 original size:15 final size:15
Alignment explanation
Indices: 62358198--62358266 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
62358188 GTATCTTGGG
62358198 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
62358213 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
62358228 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
62358243 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
62358258 TTTCTTTAT
1 TTTCTTTAT
62358267 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:62358267 original size:30 final size:30
Alignment explanation
Indices: 62358189--62358276 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
62358179 CATAGTATCG
* * * *
62358189 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
62358219 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
62358249 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
62358277 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:62360825 original size:46 final size:46
Alignment explanation
Indices: 62360662--62360834 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
62360652 ATTTGGGCAT
*
62360662 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
62360706 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
62360751 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
62360799 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62360835 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:62368615 original size:3 final size:3
Alignment explanation
Indices: 62368607--62368665 Score: 54
Period size: 3 Copynumber: 20.3 Consensus size: 3
62368597 TAAGTTATGT
**
62368607 ATA ATA AT- ATA AT- ATGA ATA A-A ATA AGG A-A ATA TATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA -ATA ATA ATA
62368650 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
62368666 GTATTTTGCA
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
2 7 0.15
3 35 0.74
4 5 0.11
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:62368736 original size:14 final size:15
Alignment explanation
Indices: 62368707--62368846 Score: 67
Period size: 16 Copynumber: 9.1 Consensus size: 15
62368697 TTAGTAAAAA
62368707 AAGAATATATACATAAT
1 AAGAATATAT--ATAAT
62368724 AA-AATATATATAA-
1 AAGAATATATATAAT
62368737 AAGAATATATA-AGA-
1 AAGAATATATATA-AT
* *
62368751 AA-AATAAATATTAT
1 AAGAATATATATAAT
*
62368765 AAGGAATGTTATATAAT
1 AA-GAAT-ATATATAAT
*
62368782 AAGATATAGTATGTAAT
1 AAGA-ATA-TATATAAT
*
62368799 AA-AATATAAATAAT
1 AAGAATATATATAAT
* * *
62368813 TATAATGAAATATAAT
1 AAGAAT-ATATATAAT
* *
62368829 ATGGTATATATATAAT
1 A-AGAATATATATAAT
62368845 AA
1 AA
62368847 TAGTAAGAAT
Statistics
Matches: 93, Mismatches: 18, Indels: 26
0.68 0.13 0.19
Matches are distributed among these distances:
13 11 0.12
14 24 0.26
15 6 0.06
16 29 0.31
17 23 0.25
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.33
Consensus pattern (15 bp):
AAGAATATATATAAT
Found at i:62368746 original size:16 final size:16
Alignment explanation
Indices: 62368705--62368747 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
62368695 AATTAGTAAA
62368705 AAAAGAATATATACAT
1 AAAAGAATATATACAT
62368721 AATAA-AATATAT--AT
1 AA-AAGAATATATACAT
62368735 AAAAGAATATATA
1 AAAAGAATATATA
62368748 AGAAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 2 0.08
14 11 0.46
16 9 0.38
17 2 0.08
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (16 bp):
AAAAGAATATATACAT
Found at i:62371591 original size:47 final size:45
Alignment explanation
Indices: 62371375--62371590 Score: 190
Period size: 47 Copynumber: 4.7 Consensus size: 45
62371365 TTTGTGTGCT
*
62371375 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA--G-GAGAGCC
** * * *
62371421 AGCATAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC--T-ACAGGAGAGCC
* * * *
62371469 AGTGTAAGA-CATGTCTGGGACAT-GTATCGGCTACAAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAGGA-GAGCC
* *
62371513 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTA-ATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACA-GGA-GAGCC
*
62371560 AGTGTAAGACCATGTTTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
62371591 ATATTATACC
Statistics
Matches: 138, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
43 4 0.03
44 12 0.09
45 13 0.09
46 21 0.15
47 65 0.47
48 21 0.15
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAGGAGAGCC
Found at i:62371729 original size:31 final size:31
Alignment explanation
Indices: 62371691--62371756 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
62371681 AAGTATAACC
*
62371691 ATGTTGTGAGTGGTATAAGTACCTATTTGAA
1 ATGTTGTGAGTGGTATAAGTAACTATTTGAA
* *
62371722 ATGTTGTGAGTTGTATAGGTAACTATTTGAA
1 ATGTTGTGAGTGGTATAAGTAACTATTTGAA
62371753 ATGT
1 ATGT
62371757 ATGAAATGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.41
Consensus pattern (31 bp):
ATGTTGTGAGTGGTATAAGTAACTATTTGAA
Found at i:62376250 original size:29 final size:30
Alignment explanation
Indices: 62376204--62376261 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
62376194 CAATTTTCGA
*
62376204 GCCTAGGGGCAAAATGGTCATTTTGCCAAG
1 GCCTAGGGGCAAAATGGTCATTTTACCAAG
*
62376234 GCCTA-GGGTAAAATGGTCATTTTACCAA
1 GCCTAGGGGCAAAATGGTCATTTTACCAA
62376262 AGATGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (30 bp):
GCCTAGGGGCAAAATGGTCATTTTACCAAG
Found at i:62376638 original size:46 final size:46
Alignment explanation
Indices: 62376586--62376805 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 46
62376576 ACTTGTGTGT
* *
62376586 GCTAGTGTAAGACATTTCTGGGACATGCATCGGCCACATTATGGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGAA
* * *
62376632 GCTAGTGTAAGACCATGTCTGCGACATGGCATC-GACAC-TGA-GACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATGATG--GA-A
* * * *
62376680 GCTAGTGTAAGACTTGTTTGGGACATGCATCGGCCTCGA-GATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGGAA
* *
62376726 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGGA-A
*
62376772 G-TCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCG
62376806 ACTTGAGATA
Statistics
Matches: 141, Mismatches: 20, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
45 2 0.01
46 67 0.48
47 46 0.33
48 25 0.18
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGAA
Found at i:62376804 original size:94 final size:93
Alignment explanation
Indices: 62376584--62376846 Score: 277
Period size: 94 Copynumber: 2.8 Consensus size: 93
62376574 TCACTTGTGT
* * * * *
62376584 GTGCTAGTGTAAGACATTTCTGGGACATGCATCGGCCAC-ATTATGGAAGCTAGTGTAAGACCAT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAGCCAGTGTAAGACCAT
*
62376648 GTCTGCGACATGGCATCGACACTGAGACGA
65 GTCTGGGACAT-GCATCGACACTGAGACGA
* *
62376678 GTGCTAGTGTAAGACTTGTTTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGA-CATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATG
* *
62376742 TCTGGGACATGCATCGGCTAC-GAGATGA
66 TCTGGGACATGCATCGAC-ACTGAGACGA
* * * * *
62376770 -TAG-TCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTTGAGATATGAGCCAGTGTAAGAC
1 GT-GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAGAC
*
62376832 CATGTCTAGGACATG
62 CATGTCTGGGACATG
62376847 GCATTGGCAC
Statistics
Matches: 144, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
91 2 0.01
92 23 0.16
93 48 0.33
94 70 0.49
95 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATG
TCTGGGACATGCATCGACACTGAGACGA
Found at i:62376814 original size:47 final size:47
Alignment explanation
Indices: 62376630--62376850 Score: 204
Period size: 47 Copynumber: 4.7 Consensus size: 47
62376620 CACATTATGG
* * *
62376630 AAGCTAGTGTAAGACCATGTCT-GCGACATGGCATCGACACTGAGACG-
1 AAGCCAGTGTAAGACCATGTCTAG-GACATGGCATCGACTC-GAGATGT
* * * * * *
62376677 AGTGCTAGTGTAAGA-CTTGTTTGGGACAT-GCATCGGCCTCGAGATGT
1 A-AGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTCGAGATGT
* *
62376724 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATG-
1 AAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACT-CGAGATGT
* * *
62376769 ATAGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATAT
1 A-AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTCGAGATGT
*
62376817 GAGCCAGTGTAAGACCATGTCTAGGACATGGCAT
1 AAGCCAGTGTAAGACCATGTCTAGGACATGGCAT
62376851 TGGCACCTTA
Statistics
Matches: 147, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
45 4 0.03
46 57 0.39
47 65 0.44
48 21 0.14
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTCGAGATGT
Found at i:62376844 original size:140 final size:140
Alignment explanation
Indices: 62376589--62376846 Score: 330
Period size: 140 Copynumber: 1.8 Consensus size: 140
62376579 TGTGTGTGCT
* *
62376589 AGTGTAAGACATTTCTGGGACATGCATCGGCCACATTATGGAAGCTAGTGTAAGACCATGTCTGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGAAGCTAGTGTAAGACCATGTCTGC
* * * * *
62376654 GACATGGCATCGACACTGAGACGAGTGCTAGTGTAAGACTTGTTTGGGACATGCATCGGCCTCGA
66 GACATGGCATCGACACTGAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA
62376719 GATGTAAGCC
131 GATGTAAGCC
*
62376729 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GATAG-TCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGGA-AGCT-AGTGTAAGACCATGTC
* *
62376791 TAG-GACATGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAGACCATGTCTAGGACATG
63 T-GCGACATGGCATCGACACTGAGACGA-GAGCCAGTGTAAGA-CATGTCTAGGACATG
62376847 GCATTGGCAC
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
138 1 0.01
139 20 0.20
140 79 0.77
141 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGAAGCTAGTGTAAGACCATGTCTGC
GACATGGCATCGACACTGAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA
GATGTAAGCC
Found at i:62383541 original size:94 final size:92
Alignment explanation
Indices: 62383428--62383643 Score: 244
Period size: 94 Copynumber: 2.3 Consensus size: 92
62383418 GGTCACTTGT
* ** *
62383428 GTGTGCTAGTG--AGACATGTCTGGGACATGCATCGGCCACATTATGGAAGCTAGTGTAAGACCA
1 GTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGGAAGCCAGTGTAAGA-CA
*
62383491 TGTCTGGGACATGGCATCGGC-ACTGAGAC
65 TGTCCGGGACAT-GCATCGGCTAC-GAGAC
* * * *
62383520 GTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCCAAGATGTAAGCCAGTGTCAGATAT
1 GTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGGAAGCCAGTGTAAGACAT
*
62383585 GTCCGGGACATGCATCGGCTACGAGAT
66 GTCCGGGACATGCATCGGCTACGAGAC
*
62383612 GATAGT-C-AGTGTAAGACCATGTCTGAGACATG
1 G-T-GTGCTAGTGTAAGA-CATGTCTGGGACATG
62383644 GCATTGACTT
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
92 33 0.31
93 30 0.28
94 44 0.41
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (92 bp):
GTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGGAAGCCAGTGTAAGACAT
GTCCGGGACATGCATCGGCTACGAGAC
Found at i:62383587 original size:46 final size:46
Alignment explanation
Indices: 62383432--62383643 Score: 180
Period size: 46 Copynumber: 4.6 Consensus size: 46
62383422 ACTTGTGTGT
* ** *
62383432 GCTAGTG--AGACATGTCTGGGACATGCATCGGCCACATTATGGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCAAGATGTAA
* ** * **
62383476 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAGACGTGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCCAAGATGTAA
*
62383524 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCCAAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCAAGATGTAA
* * * * ** *
62383570 GCCAGTGTCAGATATGTCCGGGACATGCATCGGCTACGAGATG-ATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCAAGATGTA-A
*
62383616 G-TCAGTGTAAGACCATGTCTGAGACATG
1 GCT-AGTGTAAGA-CATGTCTGGGACATG
62383644 GCATTGACTT
Statistics
Matches: 131, Mismatches: 30, Indels: 11
0.76 0.17 0.06
Matches are distributed among these distances:
44 7 0.05
45 1 0.01
46 61 0.47
47 40 0.31
48 22 0.17
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCAAGATGTAA
Found at i:62388042 original size:39 final size:39
Alignment explanation
Indices: 62387998--62388270 Score: 444
Period size: 39 Copynumber: 7.1 Consensus size: 39
62387988 ATGCAAGACA
*
62387998 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
62388037 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
62388076 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
62388115 CT--AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
62388152 CTGGAAATATAT-CGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
62388190 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
62388229 CTGGAAATGTATCCGGGTTAAAGTCCCACAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
62388268 CTG
1 CTG
62388271 ATAATATAAT
Statistics
Matches: 219, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
37 35 0.16
38 36 0.16
39 148 0.68
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:62392653 original size:47 final size:43
Alignment explanation
Indices: 62392543--62392669 Score: 130
Period size: 47 Copynumber: 2.8 Consensus size: 43
62392533 TTATTTGTGT
*
62392543 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTGCGAGA
* ** *
62392589 GCCAGCATAAGACCATGTCTGGGATATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT--G-CGAGA
62392637 GCTAGTGTAAGACATGTCT-GGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
62392670 TACAAGATGT
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
45 12 0.18
46 14 0.21
47 21 0.31
48 20 0.30
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (43 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGCGAGA
Found at i:62392712 original size:91 final size:93
Alignment explanation
Indices: 62392543--62392712 Score: 229
Period size: 91 Copynumber: 1.8 Consensus size: 93
62392533 TTATTTGTGT
*
62392543 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGTGAGAGCCAGCATAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATAGT-AGAGCCAGCATAAGACCATGTC
* *
62392608 TGGGATATGGCATCGGCATTGAGACGAGA
65 TAGGACATGGCATCGGCATTGAGACGAGA
* * * **
62392637 GCTAGTGTAAGACATGTCT-GGACATGCATCGGCTACA-AG-ATGTGTCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATAGTA-GAGCCAGCATAAGACCATGTC
62392699 TAGGACATGGCATC
65 TAGGACATGGCATC
62392713 AATTTAATGG
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
90 1 0.01
91 29 0.43
92 1 0.01
93 17 0.25
94 19 0.28
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATAGTAGAGCCAGCATAAGACCATGTCT
AGGACATGGCATCGGCATTGAGACGAGA
Found at i:62392899 original size:31 final size:31
Alignment explanation
Indices: 62392861--62392926 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
62392851 AAGTATAACC
62392861 ATGTTGTGAGTGGTATAAGTACCTATTTGAA
1 ATGTTGTGAGTGGTATAAGTACCTATTTGAA
*
62392892 ATGTTGTGAGTGGTATAGGTACCTATTTGAA
1 ATGTTGTGAGTGGTATAAGTACCTATTTGAA
62392923 ATGT
1 ATGT
62392927 ATGAAATGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.39
Consensus pattern (31 bp):
ATGTTGTGAGTGGTATAAGTACCTATTTGAA
Found at i:62394638 original size:40 final size:40
Alignment explanation
Indices: 62394592--62394759 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
62394582 CGGAATATAA
62394592 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *** * *
62394632 TCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62394672 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
62394712 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
62394752 CCGGATAT
1 CCGGATAT
62394760 TATTCAATTT
Statistics
Matches: 100, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
39 1 0.01
40 99 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62394742 original size:80 final size:80
Alignment explanation
Indices: 62394608--62394757 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
62394598 ATAACCACGT
* * *
62394608 GCACAAATGCCTTCGGGTCTTAGCTCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
62394673 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
62394688 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
62394751 CCCGGAT
64 CCCGGAT
62394758 ATTATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:62399543 original size:25 final size:25
Alignment explanation
Indices: 62399515--62399566 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
62399505 GAAAATTATT
62399515 TACGACAATGAGGTATTTTTTACAC
1 TACGACAATGAGGTATTTTTTACAC
*
62399540 TACGAGAATGAGGTATTTTTTACAC
1 TACGACAATGAGGTATTTTTTACAC
62399565 TA
1 TA
62399567 ACTTATGATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (25 bp):
TACGACAATGAGGTATTTTTTACAC
Found at i:62401921 original size:29 final size:28
Alignment explanation
Indices: 62401855--62402013 Score: 140
Period size: 29 Copynumber: 5.5 Consensus size: 28
62401845 TGACGAGATC
62401855 GGCACTAAGTGTGCGTGCTGGAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAATAT
62401883 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAA-ATAT
** *
62401912 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGG-AAAATAT
** * ***
62401941 GGCACTGGGTGTGCGAGCTCGGAGGGTAT
1 GGCACTAAGTGTGCGTGCT-GGAAAATAT
** * * *
62401970 GGCACTGTGTGTGCGGGCT-TAAATTACGT
1 GGCACTAAGTGTGCGTGCTGGAAAATA--T
62401999 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
62402014 AAATCGAGTA
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
27 3 0.03
28 24 0.22
29 76 0.70
30 5 0.05
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (28 bp):
GGCACTAAGTGTGCGTGCTGGAAAATAT
Found at i:62409797 original size:29 final size:28
Alignment explanation
Indices: 62409729--62409889 Score: 144
Period size: 29 Copynumber: 5.6 Consensus size: 28
62409719 CGGTGACGAG
62409729 ATGGCACTAAGTGTGCGTGCTGGAAAAT
1 ATGGCACTAAGTGTGCGTGCTGGAAAAT
62409757 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAA-AT
**
62409786 ATGGCACTAAGTGTGCAAGCTGGAAAAAT
1 ATGGCACTAAGTGTGCGTGCTGG-AAAAT
* ** * ***
62409815 ACGGCACTGGGTGTGCGAGCTCGGAGGGT
1 ATGGCACTAAGTGTGCGTGCT-GGAAAAT
** * * *
62409844 ATGGCACTGTGTGTGCGGGCT-TAAATT
1 ATGGCACTAAGTGTGCGTGCTGGAAAAT
62409871 ACGTGGCACTAAGTGTGCG
1 A--TGGCACTAAGTGTGCG
62409890 AAATCGAGTA
Statistics
Matches: 110, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
27 3 0.03
28 26 0.24
29 76 0.69
30 5 0.05
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGTGCTGGAAAAT
Found at i:62419946 original size:43 final size:42
Alignment explanation
Indices: 62419883--62419970 Score: 122
Period size: 43 Copynumber: 2.1 Consensus size: 42
62419873 ACATGTATCG
*
62419883 CATCCATCATGAACTCGGACCACGCAACGAGCTCAGATGCTCA
1 CATCCATAATGAACTCGGACCACGCAACGAGCTCAGATGC-CA
* * * *
62419926 CATCCATAATGAAGTTGGACCTCTCAACGAGCTCAGATGCCA
1 CATCCATAATGAACTCGGACCACGCAACGAGCTCAGATGCCA
62419968 CAT
1 CAT
62419971 ATATCACAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 5 0.12
43 35 0.88
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.19
Consensus pattern (42 bp):
CATCCATAATGAACTCGGACCACGCAACGAGCTCAGATGCCA
Found at i:62425283 original size:48 final size:48
Alignment explanation
Indices: 62425190--62425309 Score: 116
Period size: 48 Copynumber: 2.5 Consensus size: 48
62425180 CAAGATGAGA
* ** *
62425190 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAATGTTGATATGTGG
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCAACATCGATATGTGG
* * * * * *
62425238 GCCAGTGTAATACCATATTTGGGATATGGCATCGACATCGGTATGTGAT
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCAACATCGATATGTG-G
**
62425287 TTCA-TGTAAGACCATATCTGGGA
1 GCCAGTGTAAGACCATATCTGGGA
62425310 TATGCCGTTG
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
48 55 0.96
49 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
GCCAGTGTAAGACCATATCTGGGACATGGCATCAACATCGATATGTGG
Found at i:62425485 original size:90 final size:90
Alignment explanation
Indices: 62425319--62425489 Score: 202
Period size: 90 Copynumber: 1.9 Consensus size: 90
62425309 ATATGCCGTT
* * * * * * *
62425319 GACATGAGATTTTGTGTAAGACCATGTTTGGGATATGGCATCAATATAAGGCCCCGTATAAGACC
1 GACATGAGAATTTGTATAAGACCATATCTAGGATATGGCATCAATATAAGGACCCATATAAGACC
*
62425384 ATGTTTGGGACATGGCATCGGCACC
66 ATGTTCGGGACATGGCATCGGCACC
** * *
62425409 GACATGAGAATTTGTATAAGACCATATCTAGGATATGGCATCGGTATGTA-GACCCATGTAAGAC
1 GACATGAGAATTTGTATAAGACCATATCTAGGATATGGCATCAATAT-AAGGACCCATATAAGAC
62425473 CATG-TCGAGGACATGGC
65 CATGTTCG-GGACATGGC
62425490 TTTGGCATTC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
89 2 0.03
90 64 0.96
91 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (90 bp):
GACATGAGAATTTGTATAAGACCATATCTAGGATATGGCATCAATATAAGGACCCATATAAGACC
ATGTTCGGGACATGGCATCGGCACC
Found at i:62427201 original size:10 final size:10
Alignment explanation
Indices: 62427186--62427211 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
62427176 AAACCCAAGT
62427186 TCTCTTTCTC
1 TCTCTTTCTC
62427196 TCTCTTTCTC
1 TCTCTTTCTC
62427206 TCTCTT
1 TCTCTT
62427212 CTTGGCTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TCTCTTTCTC
Found at i:62429826 original size:22 final size:22
Alignment explanation
Indices: 62429785--62429826 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
62429775 ATTACACCCC
*
62429785 AAATCAAAAAAATAATAATTTA
1 AAATCAAAAAAATAAAAATTTA
* *
62429807 AAATCAAAATATTAAAAATT
1 AAATCAAAAAAATAAAAATT
62429827 ACATAAAAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (22 bp):
AAATCAAAAAAATAAAAATTTA
Found at i:62430815 original size:28 final size:29
Alignment explanation
Indices: 62430767--62430857 Score: 98
Period size: 29 Copynumber: 3.2 Consensus size: 29
62430757 AAGTCTACAT
* * *
62430767 ACATGCATATGGCCGACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
62430795 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
62430824 ACATTCATATAGCCCATCT-GGCCCGAATC
1 ACATTCATATGGCCCAT-TAGGCCCAAATC
62430853 A-ATTC
1 ACATTC
62430858 CAAGCCATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
28 24 0.44
29 29 0.54
30 1 0.02
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:62431098 original size:16 final size:16
Alignment explanation
Indices: 62431079--62431109 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
62431069 AGACTTTCAG
62431079 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCGA
62431095 CTTTTCGGCATTTCG
1 CTTTTCGGCATTTCG
62431110 GGATTTGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.26, G:0.19, T:0.45
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:62434722 original size:29 final size:29
Alignment explanation
Indices: 62434656--62434746 Score: 116
Period size: 29 Copynumber: 3.2 Consensus size: 29
62434646 AAGTCTACAT
* **
62434656 ACATGCATATGGCCCGCTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
62434684 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
62434713 ACATTCATATGGCCCATCT-GGCCCAAATC
1 ACATTCATATGGCCCAT-TAGGCCCAAATC
62434742 A-ATTC
1 ACATTC
62434747 CAAGCCATGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 24 0.43
29 31 0.55
30 1 0.02
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:62434989 original size:16 final size:16
Alignment explanation
Indices: 62434968--62434999 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
62434958 AGACTTTTGG
62434968 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCGA
62434984 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCGA
62435000 GATTTGCCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:62438591 original size:28 final size:29
Alignment explanation
Indices: 62438559--62438623 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
62438549 ATACATGCAT
*
62438559 ATGGCCCACTAGGCCC-AATCTCATTCAA
1 ATGGCCCACTAGGCCCAAATCACATTCAA
* *
62438587 ATGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCACTAGGCCCAAATCACATTCAA
62438616 ATGGCCCA
1 ATGGCCCA
62438624 TCTGACCCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 15 0.45
29 18 0.55
ACGTcount: A:0.29, C:0.34, G:0.15, T:0.22
Consensus pattern (29 bp):
ATGGCCCACTAGGCCCAAATCACATTCAA
Found at i:62438619 original size:29 final size:28
Alignment explanation
Indices: 62438551--62438624 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
62438541 AAGTCTACAT
* *
62438551 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* *
62438579 TCATTCAAATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
62438608 ACATTCATATGGCCCAT
1 ACATTCATATGGCCCAT
62438625 CTGACCCGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 20 0.51
29 19 0.49
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:62441008 original size:39 final size:39
Alignment explanation
Indices: 62440954--62441143 Score: 299
Period size: 39 Copynumber: 4.8 Consensus size: 39
62440944 AGTGTTCGAG
62440954 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
62440993 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGTGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
62441032 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * *
62441071 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
62441110 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGC
62441144 TGGTTACCAT
Statistics
Matches: 139, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 123 0.88
40 16 0.12
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:62442978 original size:5 final size:5
Alignment explanation
Indices: 62442968--62443007 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
62442958 CAGGTATTTG
**
62442968 CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA TGAAA CAAAA
1 CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA
62443008 GAGTCAAGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.78, C:0.17, G:0.03, T:0.03
Consensus pattern (5 bp):
CAAAA
Found at i:62444402 original size:90 final size:90
Alignment explanation
Indices: 62444118--62444402 Score: 301
Period size: 90 Copynumber: 3.2 Consensus size: 90
62444108 AACACGAGGT
* * * * * * *
62444118 TGTGGATGAACCACCAAATGATGCAAGTTAATACATTGTCAGATGATTTTGAATACACAACAT-T
1 TGTGGATGAACCACC-AAGGTTGCAGGTTAATACGTTGCCAGATGGTTGTGAATACACAACATAT
*
62444182 ATTGCAGATAAAAGCT-GTCAGATAATG
65 -TTGCAGATAAAAGCTAG-CAGATAATA
* * * * *
62444209 GGTGGGTGAACCACCAAGTTTGCAGGTTAATACGCTT-CCAGATGGTTGTAAATACACAACATAA
1 TGTGGATGAACCACCAAGGTTGCAGGTTAATACG-TTGCCAGATGGTTGTGAATACACAACATAT
* *
62444273 TTGCATATAAAAGCTACCAGATAATA
65 TTGCAGATAAAAGCTAGCAGATAATA
*
62444299 -GATGGGTGAACCACCAAGGTTGCAGGTTAATACGTTGCCA-AGTGGTTGTGAATACACAACATA
1 TG-TGGATGAACCACCAAGGTTGCAGGTTAATACGTTGCCAGA-TGGTTGTGAATACACAACATA
* **
62444362 TTTGTAGATAAAAAATAGCAGATAATA
64 TTTGCAGATAAAAGCTAGCAGATAATA
*
62444389 TGTGGATGGACCAC
1 TGTGGATGAACCAC
62444403 TAAATTTGTA
Statistics
Matches: 162, Mismatches: 25, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
89 4 0.02
90 142 0.88
91 16 0.10
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.26
Consensus pattern (90 bp):
TGTGGATGAACCACCAAGGTTGCAGGTTAATACGTTGCCAGATGGTTGTGAATACACAACATATT
TGCAGATAAAAGCTAGCAGATAATA
Found at i:62445960 original size:40 final size:40
Alignment explanation
Indices: 62445916--62446019 Score: 160
Period size: 39 Copynumber: 2.6 Consensus size: 40
62445906 ACTACTTGCT
*
62445916 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGT-AGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCA-CTAGCA
62445956 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
62445995 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
62446020 TTATCATCCA
Statistics
Matches: 60, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
39 33 0.55
40 27 0.45
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
Found at i:62447978 original size:171 final size:174
Alignment explanation
Indices: 62447689--62448034 Score: 527
Period size: 171 Copynumber: 2.0 Consensus size: 174
62447679 GGGCTGTCAC
* * *
62447689 ATTCTTCCTATAAAGACCAAAACAAAACTTTAAGTTCTCAATTAATTGTCACTGTAAATTAAGTT
1 ATTCTTCCTAAAAAGACCAAAACAAAACTTTAAGTTCTCAAGTAATTGTCACTGTAAATTAAATT
* * *
62447754 TGAGGTTTTCATTAAAAATAATTTCAGCGGGTACATTTATAAGAGATTTTAACTTGATATTTTGA
66 TGAGGTTTTCATTAAAAATAATTTCAACGAGTACATTTATAAGAGAATTTAACTTGATATTTTGA
*
62447819 CATATTTG-AAT-TTTTCTTTTAAAAAGGAGACAATAAAGTTTT
131 CATATTTGAAATGTTTTCTTTTAAAAACGAGACAATAAAGTTTT
** * *
62447861 ATTCTTCCTAAAAAGACCAAAATGAAACTTTAAGTTTTCAAGTAATTGTCACTG-CAATTAAATT
1 ATTCTTCCTAAAAAGACCAAAACAAAACTTTAAGTTCTCAAGTAATTGTCACTGTAAATTAAATT
*
62447925 TGAGGTTTTCATTAAAAATAATTTCAACGAGTACGTTTATAAGAGAATTTAACTTGATATTTTGA
66 TGAGGTTTTCATTAAAAATAATTTCAACGAGTACATTTATAAGAGAATTTAACTTGATATTTTGA
* * * *
62447990 CATGTTTGAAATGTTTTTTTTTAAAAACGAGATAATGAAGTTTT
131 CATATTTGAAATGTTTTCTTTTAAAAACGAGACAATAAAGTTTT
62448034 A
1 A
62448035 ACCTGCTGGA
Statistics
Matches: 156, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
171 76 0.49
172 52 0.33
173 28 0.18
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (174 bp):
ATTCTTCCTAAAAAGACCAAAACAAAACTTTAAGTTCTCAAGTAATTGTCACTGTAAATTAAATT
TGAGGTTTTCATTAAAAATAATTTCAACGAGTACATTTATAAGAGAATTTAACTTGATATTTTGA
CATATTTGAAATGTTTTCTTTTAAAAACGAGACAATAAAGTTTT
Found at i:62448227 original size:39 final size:39
Alignment explanation
Indices: 62448146--62448347 Score: 305
Period size: 39 Copynumber: 5.2 Consensus size: 39
62448136 TATGGTAACC
* *
62448146 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
62448186 CGCACAATTGCCTTCAGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
62448225 CGCACAATTGCCTTCAGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
62448264 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
62448303 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
62448342 CGCACA
1 CGCACA
62448348 TTCATACACA
Statistics
Matches: 147, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 131 0.89
40 16 0.11
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:62448269 original size:78 final size:78
Alignment explanation
Indices: 62448146--62448347 Score: 341
Period size: 78 Copynumber: 2.6 Consensus size: 78
62448136 TATGGTAACC
* *
62448146 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCAGGCTTAGCC
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCAGGCTTAGCC
62448211 CGGATATCATAGCT
65 CGGATATCATAGCT
* *
62448225 CGCACAATTGCCTTCAGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCAGGCTTAGCCC
62448290 GGATATCATAGCT
66 GGATATCATAGCT
* *
62448303 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
62448348 TTCATACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
78 100 0.86
79 16 0.14
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (78 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCAGGCTTAGCCC
GGATATCATAGCT
Found at i:62456190 original size:39 final size:39
Alignment explanation
Indices: 62456147--62456346 Score: 303
Period size: 39 Copynumber: 5.2 Consensus size: 39
62456137 TATGGTAACC
* * *
62456147 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
62456186 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
62456225 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
62456264 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
62456303 CGCAC-ATTGCCTTCGGGCTTAGCCTGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
62456341 CGCACA
1 CGCACA
62456347 TTCATACACA
Statistics
Matches: 145, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
38 34 0.23
39 111 0.77
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:62456252 original size:78 final size:78
Alignment explanation
Indices: 62456147--62456346 Score: 339
Period size: 78 Copynumber: 2.6 Consensus size: 78
62456137 TATGGTAACC
* * *
62456147 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
62456212 GGATATCATAGCT
66 GGATATCATAGCT
*
62456225 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
62456290 GGATATCATAGCT
66 GGATATCATAGCT
* *
62456303 CGCAC-ATTGCCTTCGGGCTTAGCCTGGATATCACAATTCGCACA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
62456347 TTCATACACA
Statistics
Matches: 115, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
77 37 0.32
78 78 0.68
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (78 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCT
Found at i:62459576 original size:22 final size:23
Alignment explanation
Indices: 62459549--62459593 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
62459539 GGGTATCTAC
62459549 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
62459571 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
62459594 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:62459598 original size:22 final size:22
Alignment explanation
Indices: 62459546--62459603 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
62459536 AAAGGGTATC
*
62459546 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
62459567 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
62459590 TACATATCATATCT
1 TACAAATCATATCT
62459604 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:62459606 original size:19 final size:20
Alignment explanation
Indices: 62459559--62459616 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
62459549 AAATCAAATC
*
62459559 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
62459582 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
62459601 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
62459617 TTCGACGACC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:62467904 original size:39 final size:39
Alignment explanation
Indices: 62467818--62468019 Score: 296
Period size: 39 Copynumber: 5.2 Consensus size: 39
62467808 TATGGTAACC
* * *
62467818 CGCACAAATGCCTTCGAGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCG-GGCTTAGCCCGGATATCACAACT
* *
62467858 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
62467897 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
62467936 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
62467975 CGCACCATTGCCTTCGGGCTTAGCCTGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
62468014 CGCACA
1 CGCACA
62468020 TTCATACACA
Statistics
Matches: 145, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 130 0.90
40 15 0.10
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:62467935 original size:78 final size:78
Alignment explanation
Indices: 62467818--62468019 Score: 332
Period size: 78 Copynumber: 2.6 Consensus size: 78
62467808 TATGGTAACC
* * *
62467818 CGCACAAATGCCTTCGAGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAATTGCCTTCG-GGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
62467883 CGGATATCATAGCT
65 CGGATATCATAGCT
*
62467897 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
62467962 GGATATCATAGCT
66 GGATATCATAGCT
* * *
62467975 CGCACCATTGCCTTCGGGCTTAGCCTGGATATCACAATTCGCACA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
62468020 TTCATACACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
78 101 0.88
79 14 0.12
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (78 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCT
Found at i:62471258 original size:22 final size:23
Alignment explanation
Indices: 62471231--62471275 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
62471221 GGGTATCTAC
62471231 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
62471253 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
62471276 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:62471280 original size:22 final size:22
Alignment explanation
Indices: 62471228--62471285 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
62471218 AAAGGGTATC
*
62471228 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
62471249 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
62471272 TACATATCATATCT
1 TACAAATCATATCT
62471286 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:62471288 original size:19 final size:20
Alignment explanation
Indices: 62471241--62471298 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
62471231 AAATCAAATC
*
62471241 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
62471264 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
62471283 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
62471299 TTCGACGACC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:62478975 original size:27 final size:28
Alignment explanation
Indices: 62478915--62478987 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 28
62478905 AGGATGTACA
*
62478915 CTTT-TTTTTTCTTTTGTTTTCATCATATT
1 CTTTCTTTTTT-TTTTCTTTTCA-CATATT
62478944 CTTTCTTTTTTTTTTCTTTTCA-AT-TT
1 CTTTCTTTTTTTTTTCTTTTCACATATT
* *
62478970 CATTTCTTTATTCTTTCT
1 C-TTTCTTTTTTTTTTCT
62478988 AACATAATCC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
26 3 0.08
27 16 0.41
29 14 0.36
30 6 0.15
ACGTcount: A:0.10, C:0.16, G:0.01, T:0.73
Consensus pattern (28 bp):
CTTTCTTTTTTTTTTCTTTTCACATATT
Found at i:62486710 original size:27 final size:28
Alignment explanation
Indices: 62486650--62486722 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 28
62486640 AGGATGTACA
*
62486650 CTTT-TTTTTTCTTTTGTTTTCATCATATT
1 CTTTCTTTTTT-TTTTCTTTTCA-CATATT
62486679 CTTTCTTTTTTTTTTCTTTTCA-AT-TT
1 CTTTCTTTTTTTTTTCTTTTCACATATT
* *
62486705 CATTTCTTTATTCTTTCT
1 C-TTTCTTTTTTTTTTCT
62486723 AACATAATCC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
26 3 0.08
27 16 0.41
29 14 0.36
30 6 0.15
ACGTcount: A:0.10, C:0.16, G:0.01, T:0.73
Consensus pattern (28 bp):
CTTTCTTTTTTTTTTCTTTTCACATATT
Found at i:62488721 original size:93 final size:93
Alignment explanation
Indices: 62488609--62488778 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
62488599 CCCATAAGCA
* *
62488609 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
62488674 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
62488702 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
62488767 GAGTTCGGATGC
66 GAGTTCGGATGC
62488779 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:62488775 original size:46 final size:46
Alignment explanation
Indices: 62488600--62488775 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
62488590 TGTAACCCGC
* * * *
62488600 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
62488646 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
62488696 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62488739 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
62488776 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62490638 original size:94 final size:94
Alignment explanation
Indices: 62490477--62490664 Score: 322
Period size: 94 Copynumber: 2.0 Consensus size: 94
62490467 CTTGTGTTTC
62490477 TTATTCTCAAGGAAAACTGATTATTAGATCATCACCGACTAAAGTTGGCATTGAATCTCCTACAT
1 TTATTCTCAAGGAAAACTGATTATTAGATCATCACCGACTAAAGTTGGCATTGAATCTCCTACAT
62490542 TTCTGAAACGTATTCAAGGTAATATATGT
66 TTCTGAAACGTATTCAAGGTAATATATGT
* * * *
62490571 TTATTCTCAAGGAAAATTGATTATTAGATCATCATCGACTAAAGTTGGGATTGAATTTCCTACAT
1 TTATTCTCAAGGAAAACTGATTATTAGATCATCACCGACTAAAGTTGGCATTGAATCTCCTACAT
* *
62490636 TTCTGGAACGTATTCAAGGTGATATATGT
66 TTCTGAAACGTATTCAAGGTAATATATGT
62490665 GGGCCCATTC
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (94 bp):
TTATTCTCAAGGAAAACTGATTATTAGATCATCACCGACTAAAGTTGGCATTGAATCTCCTACAT
TTCTGAAACGTATTCAAGGTAATATATGT
Found at i:62493744 original size:49 final size:49
Alignment explanation
Indices: 62493639--62493957 Score: 176
Period size: 49 Copynumber: 6.7 Consensus size: 49
62493629 GGGTTAAGAT
* * *
62493639 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAG
1 GCCGATGCCATGTCCCAGATA-GGTCTTACACTGGCTCTCATATAGCGAG
* *
62493689 GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATATAGCGAG
* * * * *
62493737 TGTCGATGCCATGTCCCAAATAGGTCTTACACTAGCTTGTC-TATCGCGAG
1 -GCCGATGCCATGTCCCAGATAGGTCTTACACTGGC-TCTCATATAGCGAG
** * * * * * * * *
62493787 GCTAATG-CATGTCCCAAACATGTCTTACACTAG--CTCA-AGACCCAAT
1 GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATATA-GCGAG
* * * * **
62493833 ACCGATG-CATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAG
1 GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCT-CATATAGCGAG
* * * * * * * *
62493881 GCCTATG-CATGTCCCAAACATGTTTTACACTAGCTCTCATCTA--GTG
1 GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATATAGCGAG
* * *
62493927 GTCGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGATAGGTCTTACACT
62493958 AGCACACAAT
Statistics
Matches: 212, Mismatches: 47, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
45 3 0.01
46 59 0.28
47 1 0.00
48 61 0.29
49 65 0.31
50 23 0.11
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATATAGCGAG
Found at i:62493854 original size:46 final size:46
Alignment explanation
Indices: 62493791--62493960 Score: 153
Period size: 46 Copynumber: 3.7 Consensus size: 46
62493781 CGCGAGGCTA
* *
62493791 ATGCATGTCCCAAACATGTCTTACACTAGCTCAAGACCCAATACCG
1 ATGCATGTCCCAAACATGTCTTACACTAGCTCAACACCCAATGCCG
* * * * * * * *
62493837 ATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCT
1 ATGCATGTCCCAAACATGTCTTACACTAGC-TCAACA-CCCAATGCCG
* * * * * *
62493885 ATGCATGTCCCAAACATGTTTTACACTAGCTC-TCATCTAGTGGTCG
1 ATGCATGTCCCAAACATGTCTTACACTAGCTCAACACCCAAT-GCCG
*
62493931 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAAACATGTCTTACACTAGC
62493961 ACACAATCAC
Statistics
Matches: 96, Mismatches: 25, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
46 59 0.61
47 5 0.05
48 32 0.33
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAAACATGTCTTACACTAGCTCAACACCCAATGCCG
Found at i:62493863 original size:94 final size:94
Alignment explanation
Indices: 62493647--62493960 Score: 265
Period size: 94 Copynumber: 3.3 Consensus size: 94
62493637 ATGCCGACGC
* ** * * * * *
62493647 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGCCGATGCCATGTCCCAGATAGG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTAAATATCGCGAGGCCTATG-CATGTCCCAAACATG
* * * * **
62493712 TCTTACACTGGCTCTCA-TCTATCGGTGTCGATG
64 TCTTACACTAGCTCACACCCAAT--G-ACCGATG
* * * ***
62493745 CCATGTCCCAAATAGGTCTTACACTAGCTTGTCTATCGCGAGG-CTAATGCATGTCCCAAACATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCT-ATGCATGTCCCAAACATG
*
62493809 TCTTACACTAGCTCAAGACCCAAT-ACCGATG
64 TCTTACACTAGCTC-ACACCCAATGACCGATG
* * *
62493840 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCTATGCATGTCCCAAACATGTT
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCTATGCATGTCCCAAACATGTC
* * * * **
62493905 TTACACTAGCTCTCATCTAGTGGTCGATG
66 TTACACTAGCTCACACCCAATGACCGATG
62493934 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
62493961 ACACAATCAC
Statistics
Matches: 174, Mismatches: 36, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
93 4 0.02
94 96 0.55
95 7 0.04
97 26 0.15
98 27 0.16
99 14 0.08
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCTATGCATGTCCCAAACATGTC
TTACACTAGCTCACACCCAATGACCGATG
Found at i:62497668 original size:21 final size:23
Alignment explanation
Indices: 62497644--62497698 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 23
62497634 GTTTTTTTTG
62497644 TATTTTTAATATTAATA-AAA-T
1 TATTTTTAATATTAATATAAATT
62497665 TATTTTT-AT-TTAATATAAATT
1 TATTTTTAATATTAATATAAATT
*
62497686 TATTATTAA-ATTA
1 TATTTTTAATATTA
62497699 TATTTTAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 6 0.21
20 5 0.17
21 14 0.48
22 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TATTTTTAATATTAATATAAATT
Found at i:62498668 original size:22 final size:24
Alignment explanation
Indices: 62498620--62498665 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
62498610 GCATCACATT
* *
62498620 TCATATACCAAAATCAAACCATAA
1 TCATATACAAAAACCAAACCATAA
*
62498644 TCATA-ACAAAAACCAAGCCATA
1 TCATATACAAAAACCAAACCATA
62498666 TCACATGGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.54, C:0.26, G:0.02, T:0.17
Consensus pattern (24 bp):
TCATATACAAAAACCAAACCATAA
Found at i:62499258 original size:43 final size:42
Alignment explanation
Indices: 62499211--62499309 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
62499201 TCCTAGATGT
* * *
62499211 GGTCTTACATGTAACCAAATATCGATGCCACTGT-CTCAGACAG
1 GGTCTTACACGTAACCAAATA-CGATGCCAATATAC-CAGACAG
* * *
62499254 GGTCTTACACGAAATCAAATACGATGCCAATATACCAGACAT
1 GGTCTTACACGTAACCAAATACGATGCCAATATACCAGACAG
62499296 GGTCTTACACGTAA
1 GGTCTTACACGTAA
62499310 ATCATAAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 29 0.60
43 19 0.40
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGTAACCAAATACGATGCCAATATACCAGACAG
Found at i:62499293 original size:42 final size:41
Alignment explanation
Indices: 62499192--62499356 Score: 143
Period size: 43 Copynumber: 3.9 Consensus size: 41
62499182 AGCTTGTACA
* ** * * *
62499192 ATGCCAACGTCCTAGATGTGGTCTTACATGTAACCAAATATCG
1 ATGCCAATGTCC-AGACATGGTCTTACACGAAATCAAATA-CG
* *
62499235 ATGCCACTGTCTCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTC-CAGACATGGTCTTACACGAAATCAAATACG
*
62499277 ATGCCAATATACCAGACATGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAATGT-CCAGACATGGTCTTACACG-AAATCA-AA-TACG
* * *
62499321 ATGCCAACGTCCCAGACATGGTCGTACATGAAATCA
1 ATGCCAATGT-CCAGACATGGTCTTACACGAAATCA
62499357 CATATCGGAT
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
42 27 0.27
43 43 0.43
44 30 0.30
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (41 bp):
ATGCCAATGTCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:62500464 original size:13 final size:13
Alignment explanation
Indices: 62500446--62500472 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
62500436 CACAAACGAT
62500446 AAAATTTTCACAC
1 AAAATTTTCACAC
62500459 AAAATTTTCACAC
1 AAAATTTTCACAC
62500472 A
1 A
62500473 TACTAATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:62503302 original size:49 final size:48
Alignment explanation
Indices: 62503197--62503326 Score: 129
Period size: 49 Copynumber: 2.7 Consensus size: 48
62503187 TGATGTGTAC
* * * *
62503197 GCTAGTGTAAGACCTTTCTGGGACATGGCATTAGCACCGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTAGGATATGGCATTAGCACAGATA-ATGAGA
* *
62503246 GCCAGTGTAAGACCTGTCTAGGATACGGCATTAGCCACAAGAT-ATGCA-A
1 GCTAGTGTAAGACCTGTCTAGGATATGGCATTAG-CAC-AGATAATG-AGA
* * *
62503295 GCTAGTGTATGACATGTCTAAGATATGGCATT
1 GCTAGTGTAAGACCTGTCTAGGATATGGCATT
62503327 GGCTTGAGGT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
49 60 0.90
50 4 0.06
51 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTAGGATATGGCATTAGCACAGATAATGAGA
Found at i:62506711 original size:49 final size:48
Alignment explanation
Indices: 62506645--62506957 Score: 193
Period size: 49 Copynumber: 6.6 Consensus size: 48
62506635 CATCAAAGTT
* *
62506645 GATGTCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAGACC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-CC
* * * * * *
62506694 GATGCCGTGTCCCAGACAGGTCTTACGCTGGCTCTCATCTATCGATGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGA-GCC
* * * * * *
62506743 GATGCCATGTCCCAGACAAGTCTTACATTGA--TACACA-A-CAAGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGCC
** *
62506787 GACACCATGTCCCAGACAGGTCTTACACT-AGCTTGT-ATATCTCGAGACC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAG-CC
* * * * * * *
62506836 GATG-CATGTCCTAGACATGTCTTACACT-AGC--TCTTGTCTCAATGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGA-GCC
* * * *
62506882 GATG-CATGTCCCAGACATGTCTTACACTGGCTGGT-ATATCTCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACT-TTCATATATCGA-GCC
*
62506930 GATG-CATGTCCCAGACATGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
62506958 AGCACACATA
Statistics
Matches: 206, Mismatches: 44, Indels: 29
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.00
44 26 0.13
45 3 0.01
46 39 0.19
47 3 0.01
48 64 0.31
49 69 0.33
50 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGCC
Found at i:62506852 original size:48 final size:47
Alignment explanation
Indices: 62506792--62506960 Score: 225
Period size: 48 Copynumber: 3.6 Consensus size: 47
62506782 AAGCTGACAC
*
62506792 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAG-CCGATG
* * * * *
62506840 CATGTCCTAGACATGTCTTACACTAGC-TCT-TGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGA-GCCGATG
* *
62506886 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGA-GCCGATG
62506934 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
62506961 ACACATATCA
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
46 36 0.35
47 4 0.04
48 63 0.61
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGCCGATG
Found at i:62509903 original size:40 final size:40
Alignment explanation
Indices: 62509837--62509987 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
62509827 AAATTGAATG
* *
62509837 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
62509876 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
62509916 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
62509956 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
62509988 ACGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:62510001 original size:40 final size:40
Alignment explanation
Indices: 62509874--62510003 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
62509864 ATGCTGGAAA
* * *
62509874 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
62509914 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
62509954 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
62509994 TTATATCCGG
1 TTATATCCGG
62510004 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:62510002 original size:80 final size:79
Alignment explanation
Indices: 62509837--62510003 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
62509827 AAATTGAATG
*
62509837 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
62509902 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * * *
62509916 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
62509979 CATTTGTGC-ACGTGGTT
63 CAATTGTGCTA-GTGGCT
62509996 ATATCCGG
1 ATATCCGG
62510004 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 18 0.24
80 57 0.76
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:62517764 original size:122 final size:120
Alignment explanation
Indices: 62517548--62517765 Score: 287
Period size: 122 Copynumber: 1.8 Consensus size: 120
62517538 AATTATGTGG
* * *
62517548 AATGAAATATGGATGTATTGATTATTGATTATGTGTGTATGAGTATTCGAATAATACCCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATTATGTGTGCATGAGAATTCGAATAATACCCGGGCTA
* * **
62517613 AGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 AGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
62517668 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCGG
1 AATGAAATATGGATGT--AATGATTATTGAT-TATGTGTGCATGAG-AATTCGAATAATACCCGG
*
62517732 GCTAAG-CCCGAAGACAATTATGCTGGAAATTATA
62 GCTAAGTCCCGAAGACAATTATGCTAGAAATTATA
62517766 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
120 15 0.18
122 35 0.42
123 30 0.36
124 3 0.04
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATTATGTGTGCATGAGAATTCGAATAATACCCGGGCTA
AGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:62517790 original size:40 final size:40
Alignment explanation
Indices: 62517724--62517874 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
62517714 AAATTGAATG
* *
62517724 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
62517763 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
62517803 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
62517843 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
62517875 ACGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:62517888 original size:40 final size:40
Alignment explanation
Indices: 62517761--62517890 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
62517751 ATGCTGGAAA
* * *
62517761 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
62517801 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
62517841 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
62517881 TTATATCCGG
1 TTATATCCGG
62517891 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:62517889 original size:80 final size:79
Alignment explanation
Indices: 62517724--62517890 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
62517714 AAATTGAATG
*
62517724 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
62517789 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * * *
62517803 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
62517866 CATTTGTGC-ACGTGGTT
63 CAATTGTGCTA-GTGGCT
62517883 ATATCCGG
1 ATATCCGG
62517891 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 18 0.24
80 57 0.76
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:62523771 original size:47 final size:46
Alignment explanation
Indices: 62523665--62523832 Score: 198
Period size: 47 Copynumber: 3.6 Consensus size: 46
62523655 AAGCTGACAC
*
62523665 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGACCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TGTATATCTCGAG-CCGATG
* * * * *
62523713 CATGT-CTAGACATGTCTTAACACTAGCTCT-TGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTT-ACACTAGCTGTATATCTCGA-GCCGATG
*
62523759 CATGTCCCAGACATGTCTTACACTGGCTGGTATAT-TCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-GTATATCTCGA-GCCGATG
62523806 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
62523833 ACACATATCA
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
46 24 0.24
47 62 0.61
48 15 0.15
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTGTATATCTCGAGCCGATG
Found at i:62523771 original size:137 final size:138
Alignment explanation
Indices: 62523527--62523780 Score: 338
Period size: 138 Copynumber: 1.8 Consensus size: 138
62523517 AAGTTGATGT
* *
62523527 CATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGGACCGGATGCGTGTCCCAGACAGGTC
1 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGGACCGGATGCATGTCCCAGACAGGTC
* * *
62523592 TTACGCTGGCTCTCTCTATCGATGTCGATGCATGTCCCAGACAAGTCTTACATTGATACACAAAA
66 TTACACTAGCTCTCTCTATCAATGTCGATGCATGTCCCAGACAAGTCTTACATTGATACACAAAA
62523657 GCTGACAC
131 GCTGACAC
* * *
62523665 CATGTCCCAGACAGGTCTTACACT-AGCTTGT-ATATCTCGAGACC-GATGCATGT-CTAGACAT
1 CATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCG-GACCGGATGCATGTCCCAGACAG
* * *
62523726 GTCTTAACACTAGCTCT-TGTCTCAATGTCGATGCATGTCCCAGACATGTCTTACA
63 GTCTT-ACACTAGCTCTCTCTATCAATGTCGATGCATGTCCCAGACAAGTCTTACA
62523781 CTGGCTGGTA
Statistics
Matches: 101, Mismatches: 11, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
137 46 0.46
138 50 0.50
139 5 0.05
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (138 bp):
CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGGACCGGATGCATGTCCCAGACAGGTC
TTACACTAGCTCTCTCTATCAATGTCGATGCATGTCCCAGACAAGTCTTACATTGATACACAAAA
GCTGACAC
Found at i:62526771 original size:40 final size:40
Alignment explanation
Indices: 62526686--62526836 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
62526676 AATTGAATGA
* * * *
62526686 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
62526726 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
62526767 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
62526806 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
62526837 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:62526850 original size:40 final size:40
Alignment explanation
Indices: 62526723--62526852 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
62526713 ATGCTGGAAA
* * *
62526723 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
62526763 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
62526803 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
62526843 TTATATCCGG
1 TTATATCCGG
62526853 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:62526851 original size:80 final size:80
Alignment explanation
Indices: 62526685--62526852 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
62526675 AAATTGAATG
* *
62526685 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
62526750 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
62526765 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
62526828 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
62526845 ATATCCGG
1 ATATCCGG
62526853 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:62534717 original size:122 final size:120
Alignment explanation
Indices: 62534501--62534718 Score: 280
Period size: 122 Copynumber: 1.8 Consensus size: 120
62534491 AATTATGTGG
* * * *
62534501 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATCCCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
* * **
62534566 AGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 AGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
*
62534621 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATAT-CCG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAAT-A-ATCCCG
*
62534684 GGCTAAG-CCCGAAGACAATTATGCTGGAAATTATA
61 GGCTAAGTCCCGAAGACAATTATGCTAGAAATTATA
62534719 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
120 15 0.18
122 52 0.63
123 14 0.17
124 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
AGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:62534743 original size:40 final size:40
Alignment explanation
Indices: 62534677--62534827 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
62534667 AAATTGAATG
* *
62534677 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
62534716 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
62534756 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
62534796 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
62534828 ACGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:62534841 original size:40 final size:40
Alignment explanation
Indices: 62534714--62534843 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
62534704 ATGCTGGAAA
* * *
62534714 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
62534754 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
62534794 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
62534834 TTATATCCGG
1 TTATATCCGG
62534844 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:62534842 original size:80 final size:79
Alignment explanation
Indices: 62534677--62534843 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
62534667 AAATTGAATG
*
62534677 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
62534742 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * * *
62534756 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
62534819 CATTTGTGC-ACGTGGTT
63 CAATTGTGCTA-GTGGCT
62534836 ATATCCGG
1 ATATCCGG
62534844 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 18 0.24
80 57 0.76
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:62541198 original size:20 final size:20
Alignment explanation
Indices: 62541169--62541226 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
62541159 ATAAACTATG
*
62541169 TACCACTCCATTTACTTTCT
1 TACCATTCCATTTACTTTCT
*
62541189 TACCATTCCATTTACTTACT
1 TACCATTCCATTTACTTTCT
* *
62541209 TTCCATTTCATTTACTTT
1 TACCATTCCATTTACTTT
62541227 ACATAAACTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (20 bp):
TACCATTCCATTTACTTTCT
Done.