Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 202 of 438
Found at i:62541212 original size:15 final size:16
Alignment explanation
Indices: 62541194--62541226 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
62541184 TTTCTTACCA
62541194 TTCCATTT-ACTTACT
1 TTCCATTTCACTTACT
*
62541209 TTCCATTTCATTTACT
1 TTCCATTTCACTTACT
62541225 TT
1 TT
62541227 ACATAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.58
Consensus pattern (16 bp):
TTCCATTTCACTTACT
Found at i:62544179 original size:26 final size:26
Alignment explanation
Indices: 62544150--62544199 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
62544140 CATTCTTGAT
*
62544150 TTAAATTAATAATTTCGTTAAATTAA
1 TTAAATTAATAATTTCATTAAATTAA
*
62544176 TTAAATTAATAATTTTATTAAATT
1 TTAAATTAATAATTTCATTAAATT
62544200 CCATGATAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
TTAAATTAATAATTTCATTAAATTAA
Found at i:62555928 original size:31 final size:31
Alignment explanation
Indices: 62555868--62555931 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
62555858 CCTTTTCATA
*
62555868 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCAAAGCCT
** * *
62555899 TTTCATATTTCATATTACTGGGTCAAAGCCT
1 TTTCATATTTCATAACACTAGGCCAAAGCCT
62555930 TT
1 TT
62555932 ACTATAAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCAAAGCCT
Found at i:62556223 original size:51 final size:48
Alignment explanation
Indices: 62556141--62556249 Score: 155
Period size: 51 Copynumber: 2.2 Consensus size: 48
62556131 CTGGAGGCCT
* *
62556141 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCTGTAAACTGGGGCAAA
1 AGCC-CTTTTAATAACTAGGGCAAAGCCCTTTTCGGTAAACTGGGGC-AA
*
62556191 AGCCCTTTTAATAAACTAGGGCAAAAGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTTAAT-AACTAGGGC-AAAGCCCTTTTCGGTAAACTGGGGCAA
62556241 AGCCCTTTT
1 AGCCCTTTT
62556250 TGCACTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
49 8 0.15
50 22 0.41
51 24 0.44
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (48 bp):
AGCCCTTTTAATAACTAGGGCAAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:62556250 original size:26 final size:26
Alignment explanation
Indices: 62556154--62556249 Score: 126
Period size: 25 Copynumber: 3.8 Consensus size: 26
62556144 CTCTTTTAAT
*
62556154 AACTGGGGC-AAAGCCCTTTTCTGTA
1 AACTGGGGCAAAAGCCCTTTTCAGTA
*
62556179 AACTGGGGCAAAAGCCCTTTT-AATA
1 AACTGGGGCAAAAGCCCTTTTCAGTA
* *
62556204 AACTAGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCAGTA
*
62556230 AACTGGGGC-ATAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
62556250 TGCACTTCCT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
25 41 0.66
26 21 0.34
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCAGTA
Found at i:62556340 original size:20 final size:20
Alignment explanation
Indices: 62556297--62556343 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
62556287 TTATGAATAC
*
62556297 ATCATGTGCATATCATACTT
1 ATCATGTGCATATCATACTA
*
62556317 ATCATGTGCATATTATA-TCA
1 ATCATGTGCATATCATACT-A
62556337 ATCATGT
1 ATCATGT
62556344 ATATTAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATATCATACTA
Found at i:62567313 original size:21 final size:22
Alignment explanation
Indices: 62567288--62567336 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
62567278 GGGAGGGATT
62567288 TTTTTAATATTAATA-T-AATTA
1 TTTTTAAT-TTAATATTAAATTA
62567309 TTTTT-ATTTAATATTAAATTA
1 TTTTTAATTTAATATTAAATTA
62567330 TTTTTAA
1 TTTTTAA
62567337 ACTATATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 6 0.24
20 3 0.12
21 15 0.60
22 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTTTAATTTAATATTAAATTA
Found at i:62582409 original size:47 final size:44
Alignment explanation
Indices: 62582238--62582503 Score: 200
Period size: 47 Copynumber: 5.7 Consensus size: 44
62582228 ATATATTGTT
* * *
62582238 GATGACATGTCCCAGACATGGTCTTACACTGGCTCTTATATATGCGTG-CT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGG--C-TATCTCT--GTGACC
* *
62582288 GATGCATGTCCCAGACATGTCTTACACTAGC-ACGACTCT-T-AGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTA--TCTCTGTGA-CC
* * *
62582332 GATGCGTGTCCCAGACACGTCTTATACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT-GA--CC
* *
62582379 GATGCATGTCTCAGACATGTCTTACTCTGGCACTCATCTCTGT-ACC
1 GATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTGACC
* *
62582425 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTGACC
*
62582473 GAAGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
62582504 GCACAAATCA
Statistics
Matches: 179, Mismatches: 20, Indels: 38
0.76 0.08 0.16
Matches are distributed among these distances:
43 5 0.03
44 30 0.17
45 3 0.02
46 26 0.15
47 58 0.32
48 29 0.16
49 16 0.09
50 12 0.07
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTGACC
Found at i:62582480 original size:94 final size:91
Alignment explanation
Indices: 62582238--62582503 Score: 290
Period size: 94 Copynumber: 2.9 Consensus size: 91
62582228 ATATATTGTT
* *
62582238 GATGACATGTCCCAGACATGGTCTTACACTGGCTCTTATATATGCGTG-CTGATGCATGTCCCAG
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT--GTGACCGATGCATGTCCCAG
* *
62582302 ACATGTCTTACACTAGCACGACTCTTAGCC
62 ACATGTCTTACACTGGCACCACTCTTAGCC
* * * * * *
62582332 GATGCGTGTCCCAGACA-CGTCTTATACTGGCTATC-T-CTGTCGAGGCCGATGCATGTCTCAGA
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GA--CCGATGCATGTCCCAGA
*
62582394 CATGTCTTACTCTGGCACTCATCTCTGTA-CC
63 CATGTCTTACACTGGCAC-CA-CTCT-TAGCC
*
62582425 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACCGAAGCATGTCCCAGACA
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACCGATGCATGTCCCAGACA
62582490 TGTCTTACACTGGC
65 TGTCTTACACTGGC
62582504 GCACAAATCA
Statistics
Matches: 142, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
87 2 0.01
88 1 0.01
89 1 0.01
91 32 0.23
92 15 0.11
93 22 0.15
94 48 0.34
95 15 0.11
96 3 0.02
97 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACCGATGCATGTCCCAGACAT
GTCTTACACTGGCACCACTCTTAGCC
Found at i:62587114 original size:7 final size:7
Alignment explanation
Indices: 62587102--62587128 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
62587092 AAATAAGATA
62587102 ATATAAC
1 ATATAAC
62587109 ATATAAC
1 ATATAAC
62587116 ATATAAC
1 ATATAAC
62587123 ATATAA
1 ATATAA
62587129 AAAGAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (7 bp):
ATATAAC
Found at i:62589412 original size:42 final size:42
Alignment explanation
Indices: 62589353--62589439 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
62589343 GAGAAAGTGA
62589353 TGATGATAATGATGATGGTGAATCAAACAATTCAACTGGTTT
1 TGATGATAATGATGATGGTGAATCAAACAATTCAACTGGTTT
*
62589395 TGATGATAATGATGATGGTGAATCAAACAATTCAAGTGGTTT
1 TGATGATAATGATGATGGTGAATCAAACAATTCAACTGGTTT
62589437 TGA
1 TGA
62589440 AATGGAATTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (42 bp):
TGATGATAATGATGATGGTGAATCAAACAATTCAACTGGTTT
Found at i:62591779 original size:12 final size:12
Alignment explanation
Indices: 62591762--62591788 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
62591752 CCTCTAAAAC
62591762 TCAGACCCATTA
1 TCAGACCCATTA
62591774 TCAGACCCATTA
1 TCAGACCCATTA
62591786 TCA
1 TCA
62591789 TGCAATTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.26
Consensus pattern (12 bp):
TCAGACCCATTA
Found at i:62592223 original size:20 final size:20
Alignment explanation
Indices: 62592198--62592238 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
62592188 ATTGGACTTT
*
62592198 AATTTTTAAATCAAAACTAA
1 AATTTTGAAATCAAAACTAA
* *
62592218 AATTTTGAAATTAAAAGTAA
1 AATTTTGAAATCAAAACTAA
62592238 A
1 A
62592239 GGGATTGAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (20 bp):
AATTTTGAAATCAAAACTAA
Found at i:62593289 original size:18 final size:19
Alignment explanation
Indices: 62593266--62593321 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
62593256 TGATTAAACA
62593266 ATTCAATAATATAAATAGT
1 ATTCAATAATATAAATAGT
* *
62593285 A-TC-A-AATATGAAATTGA
1 ATTCAATAATAT-AAATAGT
*
62593302 ATTCAATAACATAAATAGT
1 ATTCAATAATATAAATAGT
62593321 A
1 A
62593322 GACATAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
16 5 0.18
17 7 0.25
18 4 0.14
19 8 0.29
20 4 0.14
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (19 bp):
ATTCAATAATATAAATAGT
Found at i:62593425 original size:55 final size:55
Alignment explanation
Indices: 62593333--62593446 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 55
62593323 ACATAAATTC
62593333 GAAAAAAAAAGTTTTGGGGGTTTAGGAAGAAGTAAAAGTTTTGGGGAAAGCAAAA
1 GAAAAAAAAAGTTTTGGGGGTTTAGGAAGAAGTAAAAGTTTTGGGGAAAGCAAAA
* * * *
62593388 GAAAAGAAAAAGTTTTGGGAGGTTT-GG-GGTAGTAAAAGTTTTGGGGAAGGTAAAA
1 GAAAA-AAAAAGTTTTGGG-GGTTTAGGAAGAAGTAAAAGTTTTGGGGAAAGCAAAA
62593443 GAAA
1 GAAA
62593447 TTTCTTTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
55 33 0.62
56 15 0.28
57 5 0.09
ACGTcount: A:0.43, C:0.01, G:0.33, T:0.23
Consensus pattern (55 bp):
GAAAAAAAAAGTTTTGGGGGTTTAGGAAGAAGTAAAAGTTTTGGGGAAAGCAAAA
Found at i:62593432 original size:17 final size:18
Alignment explanation
Indices: 62593410--62593443 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
62593400 TTTTGGGAGG
*
62593410 TTTGGGGTA-GTAAAAGT
1 TTTGGGGAAGGTAAAAGT
62593427 TTTGGGGAAGGTAAAAG
1 TTTGGGGAAGGTAAAAG
62593444 AAATTTCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.00, G:0.38, T:0.29
Consensus pattern (18 bp):
TTTGGGGAAGGTAAAAGT
Found at i:62594313 original size:20 final size:21
Alignment explanation
Indices: 62594288--62594332 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
62594278 GATAAATAAC
62594288 AAAAACCAATAAATGTT-ATA
1 AAAAACCAATAAATGTTAATA
* * *
62594308 AAAAACTATTAAATTTTAATA
1 AAAAACCAATAAATGTTAATA
62594329 AAAA
1 AAAA
62594333 CTATAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAAACCAATAAATGTTAATA
Found at i:62594358 original size:29 final size:30
Alignment explanation
Indices: 62594304--62594360 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
62594294 CAATAAATGT
62594304 TATAAAAAACTATTAAATTTTAATAAAAAC
1 TATAAAAAACTATTAAATTTTAATAAAAAC
62594334 TATAAAAAA-TATTAAAATTTT-ATAAAA
1 TATAAAAAACTATT-AAATTTTAATAAAA
62594361 TTGTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (30 bp):
TATAAAAAACTATTAAATTTTAATAAAAAC
Found at i:62594359 original size:10 final size:10
Alignment explanation
Indices: 62594346--62594399 Score: 56
Period size: 10 Copynumber: 5.5 Consensus size: 10
62594336 TAAAAAATAT
62594346 TAAAATTTTA
1 TAAAATTTTA
*
62594356 TAAAATTGTA
1 TAAAATTTTA
*
62594366 -AAAAATTTA
1 TAAAATTTTA
** *
62594375 TAAAAAGTTG
1 TAAAATTTTA
62594385 TAAAATTTTA
1 TAAAATTTTA
62594395 TAAAA
1 TAAAA
62594400 ATCATAAAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
9 7 0.20
10 28 0.80
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (10 bp):
TAAAATTTTA
Found at i:62594370 original size:29 final size:28
Alignment explanation
Indices: 62594306--62594360 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
62594296 ATAAATGTTA
*
62594306 TAAAAAACTATTAAATTTTAATAAAAAC
1 TAAAAAAATATTAAATTTTAATAAAAAC
62594334 TATAAAAAATATTAAAATTTT-ATAAAA
1 TA-AAAAAATATT-AAATTTTAATAAAA
62594361 TTGTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 2 0.08
29 15 0.62
30 7 0.29
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (28 bp):
TAAAAAAATATTAAATTTTAATAAAAAC
Found at i:62594408 original size:19 final size:19
Alignment explanation
Indices: 62594346--62594401 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 19
62594336 TAAAAAATAT
62594346 TAAAATTTTAT-AAAATTG
1 TAAAATTTTATAAAAATTG
*
62594364 TAAAAAATTTATAAAAAGTTG
1 T-AAAATTTTATAAAAA-TTG
62594385 TAAAATTTTATAAAAAT
1 TAAAATTTTATAAAAAT
62594402 CATAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 1 0.03
19 10 0.30
20 18 0.55
21 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
TAAAATTTTATAAAAATTG
Found at i:62594409 original size:20 final size:20
Alignment explanation
Indices: 62594334--62594409 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 20
62594324 TAATAAAAAC
* *
62594334 TATAAAAAATATTAAAATTT
1 TATAAAAATTATAAAAATTT
* *
62594354 TAT-AAAATTGTAAAAAATT
1 TATAAAAATTATAAAAATTT
*
62594373 TATAAAAAGTTGT-AAAATTT
1 TATAAAAA-TTATAAAAATTT
*
62594393 TATAAAAATCATAAAAA
1 TATAAAAATTATAAAAA
62594410 AAATTATAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 17 0.37
20 25 0.54
21 4 0.09
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (20 bp):
TATAAAAATTATAAAAATTT
Found at i:62594410 original size:21 final size:19
Alignment explanation
Indices: 62594347--62594420 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
62594337 AAAAAATATT
*
62594347 AAAATTTTATAAAATTGTAA
1 AAAATTTTATAAAAAT-TAA
**
62594367 AAAA-TTTATAAAAAGTTGT
1 AAAATTTTATAAAAA-TTAA
62594386 AAAATTTTATAAAAATCATAA
1 AAAATTTTATAAAAAT--TAA
**
62594407 AAAAAATTATAAAA
1 AAAATTTTATAAAA
62594421 TATATAGAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
19 15 0.35
20 15 0.35
21 13 0.30
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (19 bp):
AAAATTTTATAAAAATTAA
Found at i:62594483 original size:18 final size:19
Alignment explanation
Indices: 62594455--62594505 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
62594445 AAGTCATAAG
*
62594455 AAAATTATAAATTTGTAAA
1 AAAATTATAAATTCGTAAA
*
62594474 TAAA-TATAAAATTCGTAAA
1 AAAATTAT-AAATTCGTAAA
62594493 AAAATTATAAATT
1 AAAATTATAAATT
62594506 ATTATACTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 3 0.11
19 21 0.78
20 3 0.11
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (19 bp):
AAAATTATAAATTCGTAAA
Found at i:62594700 original size:9 final size:9
Alignment explanation
Indices: 62594688--62594819 Score: 87
Period size: 9 Copynumber: 14.4 Consensus size: 9
62594678 TTTTTTTTCC
62594688 TTTTATAATT
1 TTTTATAA-T
*
62594698 TTTTATGAT
1 TTTTATAAT
*
62594707 TTTTATAAAA
1 TTTTAT-AAT
*
62594717 TTTTACAAT
1 TTTTATAAT
*
62594726 TTTGT-TATT
1 TTT-TATAAT
62594735 TTTTATAAT
1 TTTTATAAT
62594744 TTTTAATATAT
1 TTTT-ATA-AT
62594755 TTTTAT-AT
1 TTTTATAAT
*
62594763 TTTTATTAAA
1 TTTTA-TAAT
62594773 TTTTA-ATAT
1 TTTTATA-AT
*
62594782 TTTTATAAC
1 TTTTATAAT
*
62594791 TTTTATTGAT
1 TTTTA-TAAT
62594801 TTTTAT--T
1 TTTTATAAT
62594808 TTTT-TAAT
1 TTTTATAAT
62594816 TTTT
1 TTTT
62594820 TTTTGTTATG
Statistics
Matches: 97, Mismatches: 13, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
6 1 0.01
7 5 0.05
8 14 0.14
9 38 0.39
10 33 0.34
11 6 0.06
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTATAAT
Found at i:62594701 original size:10 final size:10
Alignment explanation
Indices: 62594688--62594776 Score: 62
Period size: 10 Copynumber: 9.2 Consensus size: 10
62594678 TTTTTTTTCC
62594688 TTTTATAATT
1 TTTTATAATT
*
62594698 TTTTATGA-T
1 TTTTATAATT
**
62594707 TTTTATAAAA
1 TTTTATAATT
*
62594717 TTTTACAATT
1 TTTTATAATT
*
62594727 TTGT-T-ATT
1 TTTTATAATT
62594735 TTTTATAATT
1 TTTTATAATT
*
62594745 TTTAAT-ATAT
1 TTTTATAAT-T
*
62594755 TTTTATATTT
1 TTTTATAATT
62594765 TTATTA-AATT
1 TT-TTATAATT
62594775 TT
1 TT
62594777 AATATTTTTA
Statistics
Matches: 60, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
8 6 0.10
9 11 0.18
10 39 0.65
11 4 0.07
ACGTcount: A:0.30, C:0.01, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:62594710 original size:19 final size:18
Alignment explanation
Indices: 62594688--62594819 Score: 85
Period size: 19 Copynumber: 7.2 Consensus size: 18
62594678 TTTTTTTTCC
62594688 TTTTATAATTTTTTATGAT
1 TTTTATAATTTTTTAT-AT
** * *
62594707 TTTTATAAAATTTTACAA
1 TTTTATAATTTTTTATAT
* *
62594725 TTTTGTTATTTTTTATAAT
1 TTTTATAATTTTTTAT-AT
62594744 TTTTA-ATATATTTTTATAT
1 TTTTATA-AT-TTTTTATAT
* *
62594763 TTTTATTAAATTTTAATAT
1 TTTTA-TAATTTTTTATAT
*
62594782 TTTTATAACTTTTATT-GAT
1 TTTTATAA-TTTT-TTATAT
62594801 TTTTAT--TTTTTTA-AT
1 TTTTATAATTTTTTATAT
62594816 TTTT
1 TTTT
62594820 TTTTGTTATG
Statistics
Matches: 88, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
15 8 0.09
16 4 0.05
18 15 0.17
19 51 0.58
20 9 0.10
21 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTATAATTTTTTATAT
Found at i:62594720 original size:29 final size:27
Alignment explanation
Indices: 62594695--62594819 Score: 107
Period size: 27 Copynumber: 4.6 Consensus size: 27
62594685 TCCTTTTATA
62594695 ATTTTTTATGATTTTTATAAAATTTTACA-
1 ATTTTTTAT-ATTTTTAT-AAATTTTA-AT
*
62594724 ATTTTGTTAT-TTTTTATAATTTTTAAT
1 ATTTT-TTATATTTTTATAAATTTTAAT
62594751 ATATTTTTATATTTTTATTAAATTTTAAT
1 AT-TTTTTATATTTTTA-TAAATTTTAAT
* ** *
62594780 A-TTTTTATAACTTTTATTGATTTTTAT
1 ATTTTTTAT-ATTTTTATAAATTTTAAT
62594807 -TTTTTTA-ATTTTT
1 ATTTTTTATATTTTT
62594820 TTTTGTTATG
Statistics
Matches: 82, Mismatches: 7, Indels: 18
0.77 0.07 0.17
Matches are distributed among these distances:
25 5 0.06
26 1 0.01
27 34 0.41
28 22 0.27
29 16 0.20
30 4 0.05
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (27 bp):
ATTTTTTATATTTTTATAAATTTTAAT
Found at i:62594777 original size:10 final size:10
Alignment explanation
Indices: 62594688--62594807 Score: 60
Period size: 10 Copynumber: 12.7 Consensus size: 10
62594678 TTTTTTTTCC
62594688 TTTTA-TAAT
1 TTTTATTAAT
*
62594697 TTTT-TATGAT
1 TTTTAT-TAAT
* *
62594707 TTTTATAAAA
1 TTTTATTAAT
*
62594717 TTTTA-CAA-
1 TTTTATTAAT
* *
62594725 TTTTGTTATT
1 TTTTATTAAT
62594735 TTTTA-TAAT
1 TTTTATTAAT
*
62594744 TTTTAATATAT
1 TTTTATTA-AT
62594755 TTTTA-T-AT
1 TTTTATTAAT
*
62594763 TTTTATTAAA
1 TTTTATTAAT
*
62594773 TTTTAAT-AT
1 TTTTATTAAT
*
62594782 TTTTA-TAAC
1 TTTTATTAAT
*
62594791 TTTTATTGAT
1 TTTTATTAAT
62594801 TTTTATT
1 TTTTATT
62594808 TTTTTAATTT
Statistics
Matches: 84, Mismatches: 16, Indels: 21
0.69 0.13 0.17
Matches are distributed among these distances:
8 12 0.14
9 28 0.33
10 36 0.43
11 8 0.10
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (10 bp):
TTTTATTAAT
Found at i:62595661 original size:31 final size:31
Alignment explanation
Indices: 62595618--62595680 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
62595608 CAAAAGATGA
62595618 AGATAGTTGTCATCTTCCTCACTCTCTAGCC
1 AGATAGTTGTCATCTTCCTCACTCTCTAGCC
* * *
62595649 AGATGGTTGTCATCTTCCTCATTCTTTAGCC
1 AGATAGTTGTCATCTTCCTCACTCTCTAGCC
62595680 A
1 A
62595681 ACCGATTCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.19, C:0.29, G:0.14, T:0.38
Consensus pattern (31 bp):
AGATAGTTGTCATCTTCCTCACTCTCTAGCC
Found at i:62598137 original size:20 final size:21
Alignment explanation
Indices: 62598095--62598137 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
62598085 ATTGCATAAT
*
62598095 TGTTTATATTTTGATGTTGAA
1 TGTTTATATTTTGATGGTGAA
62598116 TGTTT-TATTTTGTATGGT-AA
1 TGTTTATATTTTG-ATGGTGAA
62598136 TG
1 TG
62598138 CTCTGTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.58
Consensus pattern (21 bp):
TGTTTATATTTTGATGGTGAA
Found at i:62602477 original size:46 final size:46
Alignment explanation
Indices: 62602427--62602591 Score: 133
Period size: 46 Copynumber: 3.5 Consensus size: 46
62602417 TTGAGACAAG
* * *
62602427 AGCTAGTGTTAGACATGTTTGGGATATGCATCAGCCT-CGAGATGTA
1 AGCTAATGTAAGACATGTCTGGGATATGCATC-GCCTACGAGATGTA
*
62602473 AGCTAATGTAAGACATGTCTGGGATATGCATCGGCTACGAGATGT-
1 AGCTAATGTAAGACATGTCTGGGATATGCATCGCCTACGAGATGTA
* * * * *
62602518 -G-TCAATGTAAGACCATGGCTGGGACATGGCATCGGC-ATGGATATGTGA
1 AGCT-AATGTAAGA-CATGTCTGGGATAT-GCATCGCCTA-CGAGATGT-A
*
62602566 GAGCTAGTGTAAGACCATGTCTGGGA
1 -AGCTAATGTAAGA-CATGTCTGGGA
62602592 CATGGTGTCG
Statistics
Matches: 99, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 10 0.10
45 16 0.16
46 51 0.52
50 20 0.20
51 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (46 bp):
AGCTAATGTAAGACATGTCTGGGATATGCATCGCCTACGAGATGTA
Found at i:62611828 original size:46 final size:46
Alignment explanation
Indices: 62611778--62611953 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
62611768 TGGTTGAGCA
62611778 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62611824 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
62611869 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62611917 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62611954 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62611934 original size:93 final size:93
Alignment explanation
Indices: 62611775--62611945 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
62611765 GGATGGTTGA
* *
62611775 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62611840 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
62611868 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62611933 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62611946 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62614923 original size:15 final size:15
Alignment explanation
Indices: 62614903--62614971 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
62614893 GTATCTTGGG
62614903 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
62614918 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
62614933 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
62614948 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
62614963 TTTCTTTAT
1 TTTCTTTAT
62614972 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:62614972 original size:30 final size:30
Alignment explanation
Indices: 62614894--62614981 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
62614884 CATAGTATCG
* * * *
62614894 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
62614924 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
62614954 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
62614982 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:62617406 original size:46 final size:46
Alignment explanation
Indices: 62617356--62617531 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
62617346 TGGTTGAGCA
62617356 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62617402 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
62617447 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62617495 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62617532 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62617512 original size:93 final size:93
Alignment explanation
Indices: 62617353--62617523 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
62617343 GGATGGTTGA
* *
62617353 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62617418 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
62617446 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62617511 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62617524 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62621735 original size:3 final size:3
Alignment explanation
Indices: 62621727--62621776 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
62621717 CTCTCTATAT
* * *
62621727 TTA TTA TTA TTA TTA TTA TTA TTG TTG TTA TTT TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
62621775 TT
1 TT
62621777 TCTAAAATCT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:62622108 original size:20 final size:19
Alignment explanation
Indices: 62622074--62622153 Score: 83
Period size: 20 Copynumber: 4.1 Consensus size: 19
62622064 ATAAATATTT
*
62622074 AATTAATTTTTAAATTTTCAA
1 AATT-ATTTTAAAATTTT-AA
*
62622095 AATTATTTTAAAATTTAAAA
1 AATTATTTTAAAATTT-TAA
62622115 AATTATTTTAAAA-TTTAA
1 AATTATTTTAAAATTTTAA
*
62622133 AATT-TATTAAAATTGTTAA
1 AATTATTTTAAAATT-TTAA
62622152 AA
1 AA
62622154 ATGTATAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
17 7 0.13
18 7 0.13
19 8 0.15
20 26 0.50
21 4 0.08
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (19 bp):
AATTATTTTAAAATTTTAA
Found at i:62622139 original size:19 final size:19
Alignment explanation
Indices: 62622081--62622140 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
62622071 TTTAATTAAT
* *
62622081 TTTTAAATTTTCAAAATTA
1 TTTTAAAATTTAAAAATTA
62622100 TTTTAAAATTTAAAAAATTA
1 TTTTAAAATTT-AAAAATTA
*
62622120 TTTTAAAATTTAAAATTTA
1 TTTTAAAATTTAAAAATTA
62622139 TT
1 TT
62622141 AAAATTGTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 19 0.51
20 18 0.49
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TTTTAAAATTTAAAAATTA
Found at i:62622210 original size:9 final size:8
Alignment explanation
Indices: 62622186--62622215 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
62622176 TTTTATTAAT
62622186 ATTTAAAA
1 ATTTAAAA
62622194 ATTTAAAA
1 ATTTAAAA
62622202 ATTTAAAA
1 ATTTAAAA
*
62622210 AATTAA
1 ATTTAA
62622216 TTAAATACGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATTTAAAA
Found at i:62629236 original size:34 final size:34
Alignment explanation
Indices: 62629187--62629253 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
62629177 GGATAAGTGC
* * *
62629187 TGGGAGTTGCGCATTACTTCATCAGGAAGTATTT
1 TGGGAATTGCACATTACTTCATCAAGAAGTATTT
*
62629221 TGGGAATTGCACATTACTTCTTCAAGAAGTATT
1 TGGGAATTGCACATTACTTCATCAAGAAGTATT
62629254 CTCTGCCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (34 bp):
TGGGAATTGCACATTACTTCATCAAGAAGTATTT
Found at i:62631051 original size:37 final size:37
Alignment explanation
Indices: 62630998--62631119 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
62630988 TATAAAAGAA
* *
62630998 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
62631035 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
62631072 GTCTTACCCGATCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
62631109 GTCTCACCCGG
1 GTCTTACCCGG
62631120 AACATATTCC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:62631113 original size:21 final size:21
Alignment explanation
Indices: 62631015--62631113 Score: 56
Period size: 18 Copynumber: 5.2 Consensus size: 21
62631005 CCAGACATAA
62631015 TCTCCACACGTAGTCATCGGG
1 TCTCCACACGTAGTCATCGGG
* * **
62631036 TCT-TACCCG--GTCAT--AA
1 TCTCCACACGTAGTCATCGGG
62631052 TCTCCACACGTAGTCATCGGG
1 TCTCCACACGTAGTCATCGGG
* * **
62631073 TCT-TACCCG-A-TCAT--AA
1 TCTCCACACGTAGTCATCGGG
62631089 TCTCCACACGTAGTCATCGGG
1 TCTCCACACGTAGTCATCGGG
62631110 TCTC
1 TCTC
62631114 ACCCGGAACA
Statistics
Matches: 52, Mismatches: 16, Indels: 20
0.59 0.18 0.23
Matches are distributed among these distances:
16 6 0.12
17 8 0.15
18 10 0.19
19 10 0.19
20 8 0.15
21 10 0.19
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.27
Consensus pattern (21 bp):
TCTCCACACGTAGTCATCGGG
Found at i:62631276 original size:49 final size:49
Alignment explanation
Indices: 62631221--62631484 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
62631211 TTTTACATTA
62631221 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
62631270 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACAACG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
62631319 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
62631368 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
62631417 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
62631466 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
62631485 CATATATGTA
Statistics
Matches: 207, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 207 1.00
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:62634194 original size:30 final size:30
Alignment explanation
Indices: 62634160--62634239 Score: 115
Period size: 30 Copynumber: 2.7 Consensus size: 30
62634150 ATTTATCGAA
* * *
62634160 ATGTGAAAACCTTTATGGCTATTATTAGAT
1 ATGTGAAAGCCTTTGTGGCTATAATTAGAT
* *
62634190 ATGTGAAAGTCTTTGTGGCTGTAATTAGAT
1 ATGTGAAAGCCTTTGTGGCTATAATTAGAT
62634220 ATGTGAAAGCCTTTGTGGCT
1 ATGTGAAAGCCTTTGTGGCT
62634240 CTATTAAACG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.39
Consensus pattern (30 bp):
ATGTGAAAGCCTTTGTGGCTATAATTAGAT
Found at i:62639096 original size:12 final size:12
Alignment explanation
Indices: 62639079--62639105 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
62639069 GAAAACTCAT
62639079 GTTTTTGGTTTA
1 GTTTTTGGTTTA
62639091 GTTTTTGGTTTA
1 GTTTTTGGTTTA
62639103 GTT
1 GTT
62639106 CCTTTGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.26, T:0.67
Consensus pattern (12 bp):
GTTTTTGGTTTA
Found at i:62640518 original size:20 final size:21
Alignment explanation
Indices: 62640478--62640524 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
62640468 TCTATTATTG
* *
62640478 ATTATTTTTTATAATAATTAAT
1 ATTATTTTTTAGAAT-ATTAAA
62640500 ATTATTTTTTAGAAT-TTAAA
1 ATTATTTTTTAGAATATTAAA
62640520 ATTAT
1 ATTAT
62640525 GTAATTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
22 14 0.61
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTATTTTTTAGAATATTAAA
Found at i:62640822 original size:39 final size:40
Alignment explanation
Indices: 62640762--62640904 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
62640752 TTTAGTGGCT
* **
62640762 TTAGCGGCGCTTTTATAAAAACGCCGCTATAGATCGATTA
1 TTAGCGGCGCTTTTCTAAAAACGCCGCTATAGATCGACCA
* * * *
62640802 TTAGTGGCGCTTAT-TAAAAACGCCGCTAAAGATCGAGCA
1 TTAGCGGCGCTTTTCTAAAAACGCCGCTATAGATCGACCA
*
62640841 TTAGCGGCGC-TTTCTGAAAAACGCCGCTATAGGTTC-ACCA
1 TTAGCGGCGCTTTTCT-AAAAACGCCGCTATA-GATCGACCA
*
62640881 TTAGTGGCGCTTTTCTAAAAACGC
1 TTAGCGGCGCTTTTCTAAAAACGC
62640905 TGCAATAAAT
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.36
40 46 0.52
41 8 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (40 bp):
TTAGCGGCGCTTTTCTAAAAACGCCGCTATAGATCGACCA
Found at i:62640987 original size:40 final size:40
Alignment explanation
Indices: 62640938--62641064 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 40
62640928 TAGTGAGCTT
* * * *
62640938 TTAGTGGTGCATTTTTAAAAACGCCGCTATAGATCGAGTA
1 TTAGCGGTGCATTTTTAAAAACGCCACTAAAGATCGAGCA
* *
62640978 TTAGCGGTGC-TTATTGAAGAACGCCACTAAAGATCGAGCA
1 TTAGCGGTGCATT-TTTAAAAACGCCACTAAAGATCGAGCA
* * * * * *
62641018 TTAGCAGCGCATTTTTAAAAACGCCACTAGAGGTCCACCA
1 TTAGCGGTGCATTTTTAAAAACGCCACTAAAGATCGAGCA
62641058 TTAGCGG
1 TTAGCGG
62641065 CGCTTTTACA
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 2 0.03
40 66 0.94
41 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAGCGGTGCATTTTTAAAAACGCCACTAAAGATCGAGCA
Found at i:62641100 original size:40 final size:41
Alignment explanation
Indices: 62640949--62641158 Score: 121
Period size: 40 Copynumber: 5.3 Consensus size: 41
62640939 TAGTGGTGCA
* * *
62640949 TTTTT-AAAAACGCCGCTATAGATCGAGT-ATTAGCGGTGC
1 TTTTTCAAAAACACCGCTATATATCGAGTCATTAGCGGCGC
* * * * * * * *
62640988 TTATTGAAGAACGCCACTAAAGATCGAG-CATTAGCAGCGC
1 TTTTTCAAAAACACCGCTATATATCGAGTCATTAGCGGCGC
* * * ** * *
62641028 ATTTTT-AAAAACGCCACTAGAGGTCCA-CCATTAGCGGCGC
1 -TTTTTCAAAAACACCGCTATATATCGAGTCATTAGCGGCGC
* * * * * *
62641068 TTTTACAAAAATACTGCTATATATTGA-TCATTACCGACGC
1 TTTTTCAAAAACACCGCTATATATCGAGTCATTAGCGGCGC
*
62641108 TTTTTCGAAAAACCCCGCTATATATCGAGT-ATTAGCGGCG-
1 TTTTTC-AAAAACACCGCTATATATCGAGTCATTAGCGGCGC
62641148 TTTTTCAAAAA
1 TTTTTCAAAAA
62641159 GCGCCGCAAA
Statistics
Matches: 132, Mismatches: 32, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
39 13 0.10
40 89 0.67
41 29 0.22
42 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (41 bp):
TTTTTCAAAAACACCGCTATATATCGAGTCATTAGCGGCGC
Found at i:62641433 original size:7 final size:7
Alignment explanation
Indices: 62641421--62641676 Score: 81
Period size: 7 Copynumber: 35.9 Consensus size: 7
62641411 TATCATTATA
62641421 GTTTAGG
1 GTTTAGG
62641428 GTTTAGG
1 GTTTAGG
62641435 GTTTAGG
1 GTTTAGG
* *
62641442 GTATATG
1 GTTTAGG
*
62641449 ATTTAGG
1 GTTTAGG
*
62641456 GTTTAAG
1 GTTTAGG
62641463 GTTTAGG
1 GTTTAGG
**
62641470 AG-TTACT
1 -GTTTAGG
* *
62641477 ATTTAAAG
1 GTTT-AGG
**
62641485 GTTTATA
1 GTTTAGG
**
62641492 AATTATGG
1 GTTTA-GG
*
62641500 GTTTCGG
1 GTTTAGG
* *
62641507 GATTATG
1 GTTTAGG
*
62641514 GTTTATG
1 GTTTAGG
**
62641521 GTTTAACA
1 GTTT-AGG
62641529 G-TTAGG
1 GTTTAGG
*
62641535 GTTTAAG
1 GTTTAGG
62641542 GTTTAGG
1 GTTTAGG
*
62641549 GGTTAGGG
1 GTTTA-GG
*
62641557 GTTAAGG
1 GTTTAGG
62641564 G-TTAGAG
1 GTTTAG-G
*
62641571 GTTTATG
1 GTTTAGG
*
62641578 GTTTAGA
1 GTTTAGG
*
62641585 GTCTAAGG
1 GT-TTAGG
62641593 G-TTAGG
1 GTTTAGG
*
62641599 AGTTAAGG
1 -GTTTAGG
*
62641607 GTTTAAG
1 GTTTAGG
*
62641614 GTTTAAG
1 GTTTAGG
*
62641621 GTTTAAG
1 GTTTAGG
**
62641628 GTTTATA
1 GTTTAGG
*
62641635 GTTTAGT
1 GTTTAGG
62641642 GTTTATGG
1 GTTTA-GG
*
62641650 G-ATAGG
1 GTTTAGG
**
62641656 GGCTAGAG
1 GTTTAG-G
62641664 GTTTAGG
1 GTTTAGG
62641671 GTTTAG
1 GTTTAG
62641677 ATTAATTAGT
Statistics
Matches: 179, Mismatches: 55, Indels: 30
0.68 0.21 0.11
Matches are distributed among these distances:
6 12 0.07
7 135 0.75
8 32 0.18
ACGTcount: A:0.24, C:0.02, G:0.34, T:0.40
Consensus pattern (7 bp):
GTTTAGG
Found at i:62641565 original size:29 final size:27
Alignment explanation
Indices: 62641532--62641632 Score: 85
Period size: 29 Copynumber: 3.5 Consensus size: 27
62641522 TTTAACAGTT
*
62641532 AGGGTTTAAGGTTTAGGGGTTAGGGGTTA
1 AGGG-TTAAGGTTTAGGGTTTA-GGGTTA
* *
62641561 AGGGTTAGAGGTTTATGGTTTAGAGTCTA
1 AGGGTTA-AGGTTTAGGGTTTAGGGT-TA
* * *
62641590 AGGGTTAGGAGTTAAGGGTTTAAGGTTTA
1 AGGGTTAAG-GTTTAGGGTTT-AGGGTTA
*
62641619 AGGTTTAAGGTTTA
1 AGGGTTAAGGTTTA
62641633 TAGTTTAGTG
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
28 11 0.19
29 43 0.75
30 3 0.05
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.37
Consensus pattern (27 bp):
AGGGTTAAGGTTTAGGGTTTAGGGTTA
Found at i:62642374 original size:26 final size:26
Alignment explanation
Indices: 62642345--62642402 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
62642335 TGATACAAAT
*
62642345 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
62642371 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
62642397 TGATAA
1 TGATAA
62642403 GAATTTCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:62645440 original size:84 final size:83
Alignment explanation
Indices: 62645290--62645707 Score: 442
Period size: 84 Copynumber: 5.0 Consensus size: 83
62645280 AAAACTAAGA
* * * * *
62645290 GATTAGTGGCG-TTTCTTGAAAAATGCCGCAAAAAACATAATAGTTTAACGAAAATGGCGTCGTT
1 GATTAGCGGCGTTTTTTTAAAAAACGCCGCAAAAAACATAATAGTTTAACGAAAATGGCATCGTT
62645354 TTAATTGGAGATTTAGGG
66 TTAATTGGAGATTTAGGG
* * * *
62645372 GATTAGCGGCGTTTTTTTATAAAAAACGCTGC-AAAAACATAATAGTTTAACAAAAACGGCATCA
1 GATTAGCGGCG-TTTTTT-TAAAAAACGCCGCAAAAAACATAATAGTTTAACGAAAATGGCATCG
*
62645436 TTTTAATTGGAGATTTAGAG
64 TTTTAATTGGAGATTTAGGG
* * *
62645456 GATTAGCGGCG-----TT-AAAAATGCCGCAAAAAAACGTAGTAGTTTAACGAAAATGGCATCGT
1 GATTAGCGGCGTTTTTTTAAAAAACGCCGC-AAAAAACATAATAGTTTAACGAAAATGGCATCGT
* *
62645515 TTTAGTTGGAGATTTAAGG
65 TTTAATTGGAGATTTAGGG
* * *
62645534 GATTAGCGGCGTTTCTTGAAAAAACGCCGCAAAAAACATAATAGTTTAATGAAAATGGCATCGTT
1 GATTAGCGGCGTTTTTTTAAAAAACGCCGCAAAAAACATAATAGTTTAACGAAAATGGCATCGTT
62645599 TTAATTGGAGATTTAGGG
66 TTAATTGGAGATTTAGGG
** * * * *
62645617 GATTAG-GTGTTTTTAAATTTTTTTAAAAAA-GCCTCAAAAAACATAATAGTTTAATGAAAACGT
1 GATTAGCG-G------CGTTTTTTTAAAAAACGCCGCAAAAAACATAATAGTTTAACGAAAATGG
* *
62645680 CGTCGTTTTAATTGGAGATTTAAGG
59 CATCGTTTTAATTGGAGATTTAGGG
62645705 GAT
1 GAT
62645708 AAACGCCGCA
Statistics
Matches: 282, Mismatches: 36, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
76 9 0.03
77 1 0.00
78 56 0.20
82 11 0.04
83 56 0.20
84 72 0.26
85 10 0.04
88 56 0.20
89 11 0.04
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.31
Consensus pattern (83 bp):
GATTAGCGGCGTTTTTTTAAAAAACGCCGCAAAAAACATAATAGTTTAACGAAAATGGCATCGTT
TTAATTGGAGATTTAGGG
Found at i:62645478 original size:161 final size:161
Alignment explanation
Indices: 62645308--62645622 Score: 481
Period size: 161 Copynumber: 2.0 Consensus size: 161
62645298 GCGTTTCTTG
* *
62645308 AAAAATGCCGC-AAAAAACATAATAGTTTAACGAAAATGGCGTCGTTTTAATTGGAGATTTAGGG
1 AAAAATGCCGCAAAAAAACATAATAGTTTAACGAAAATGGCATCGTTTTAATTGGAGATTTAAGG
* * *
62645372 GATTAGCGGCGTTTTTTTATAAAAAACGCTGC-AAAAACATAATAGTTTAACAAAAACGGCATCA
66 GATTAGCGGCG-TTTCTT-GAAAAAACGCCGCAAAAAACATAATAGTTTAACAAAAACGGCATCA
62645436 TTTTAATTGGAGATTTAGAGGATTAGCGGCGTT
129 TTTTAATTGGAGATTTAGAGGATTAGCGGCGTT
* * *
62645469 AAAAATGCCGCAAAAAAACGTAGTAGTTTAACGAAAATGGCATCGTTTTAGTTGGAGATTTAAGG
1 AAAAATGCCGCAAAAAAACATAATAGTTTAACGAAAATGGCATCGTTTTAATTGGAGATTTAAGG
** * *
62645534 GATTAGCGGCGTTTCTTGAAAAAACGCCGCAAAAAACATAATAGTTTAATGAAAATGGCATCGTT
66 GATTAGCGGCGTTTCTTGAAAAAACGCCGCAAAAAACATAATAGTTTAACAAAAACGGCATCATT
*
62645599 TTAATTGGAGATTTAGGGGATTAG
131 TTAATTGGAGATTTAGAGGATTAG
62645623 GTGTTTTTAA
Statistics
Matches: 139, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
160 11 0.08
161 69 0.50
162 59 0.42
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (161 bp):
AAAAATGCCGCAAAAAAACATAATAGTTTAACGAAAATGGCATCGTTTTAATTGGAGATTTAAGG
GATTAGCGGCGTTTCTTGAAAAAACGCCGCAAAAAACATAATAGTTTAACAAAAACGGCATCATT
TTAATTGGAGATTTAGAGGATTAGCGGCGTT
Found at i:62648989 original size:13 final size:14
Alignment explanation
Indices: 62648973--62649001 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
62648963 TTGTAAATAT
62648973 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
62648986 TTATAATGGTTTAA
1 TTATAATGGTTTAA
62649000 TT
1 TT
62649002 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:62649394 original size:21 final size:21
Alignment explanation
Indices: 62649368--62649407 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62649358 AAATTGCTTA
* *
62649368 ACTTAAAGCGGATGCAGCATC
1 ACTTAAAGAGGAGGCAGCATC
62649389 ACTTAAAGAGGAGGCAGCA
1 ACTTAAAGAGGAGGCAGCA
62649408 GCGAGGGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.20, G:0.28, T:0.15
Consensus pattern (21 bp):
ACTTAAAGAGGAGGCAGCATC
Found at i:62649679 original size:47 final size:47
Alignment explanation
Indices: 62649610--62649702 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
62649600 TATTGAATTT
*
62649610 TTGAATTACCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
1 TTGAAGTACCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
*
62649657 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTG
1 TTGAAGTACCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTG
62649703 TAGGAAGGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.49
Consensus pattern (47 bp):
TTGAAGTACCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
Found at i:62649828 original size:44 final size:44
Alignment explanation
Indices: 62649752--62649860 Score: 166
Period size: 44 Copynumber: 2.5 Consensus size: 44
62649742 TATGCTAAAA
* *
62649752 TTAGTGGCGTTT-TCACAAAAAATGCCGCAAAAGAACATATATTT
1 TTAGCGGCGTTTGT-ACAAAAAATACCGCAAAAGAACATATATTT
*
62649796 TTAGCGGCGTTTGTACAAAAAATACCGTAAAAGAACATATATTT
1 TTAGCGGCGTTTGTACAAAAAATACCGCAAAAGAACATATATTT
*
62649840 TTAGCGGCGTTTGTCCAAAAA
1 TTAGCGGCGTTTGTACAAAAA
62649861 GCGCCGCTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 59 0.98
45 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (44 bp):
TTAGCGGCGTTTGTACAAAAAATACCGCAAAAGAACATATATTT
Found at i:62651981 original size:2 final size:2
Alignment explanation
Indices: 62651974--62651998 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
62651964 CATCCTTCTA
62651974 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
62651999 ATACTCCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62656093 original size:17 final size:16
Alignment explanation
Indices: 62656071--62656112 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
62656061 ACGCTTTTTT
62656071 TGCATTCATCGCATTCA
1 TGCATTCATCGCA-TCA
62656088 TGCATTCAT-GCATCA
1 TGCATTCATCGCATCA
62656103 -GCATTGCATC
1 TGCATT-CATC
62656113 ATACGCACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.22
15 6 0.26
16 3 0.13
17 9 0.39
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (16 bp):
TGCATTCATCGCATCA
Found at i:62656094 original size:8 final size:8
Alignment explanation
Indices: 62656071--62656100 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
62656061 ACGCTTTTTT
62656071 TGCATTCA
1 TGCATTCA
62656079 TCGCATTCA
1 T-GCATTCA
62656088 TGCATTCA
1 TGCATTCA
62656096 TGCAT
1 TGCAT
62656101 CAGCATTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (8 bp):
TGCATTCA
Found at i:62665781 original size:17 final size:16
Alignment explanation
Indices: 62665759--62665800 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
62665749 AACGCTTTTT
62665759 TGCATTCATCGCATTCA
1 TGCATTCATCGCA-TCA
62665776 TGCATTCAT-GCATCA
1 TGCATTCATCGCATCA
62665791 -GCATTGCATC
1 TGCATT-CATC
62665801 ATACACTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.22
15 6 0.26
16 3 0.13
17 9 0.39
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (16 bp):
TGCATTCATCGCATCA
Found at i:62665782 original size:8 final size:8
Alignment explanation
Indices: 62665759--62665788 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
62665749 AACGCTTTTT
62665759 TGCATTCA
1 TGCATTCA
62665767 TCGCATTCA
1 T-GCATTCA
62665776 TGCATTCA
1 TGCATTCA
62665784 TGCAT
1 TGCAT
62665789 CAGCATTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (8 bp):
TGCATTCA
Found at i:62674082 original size:43 final size:42
Alignment explanation
Indices: 62674023--62674128 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 42
62674013 GGGCTTCAAC
* *
62674023 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
1 CCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACC-TAAA
* *** * *
62674066 CCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTAAA
1 CCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACCTAAA
*
62674108 CCCCTAAGCAGTAGGGAAACA
1 CCCCTAAGCAGTAGGGTAACA
62674129 GGTCGAGCTT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 24 0.44
43 30 0.56
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.20
Consensus pattern (42 bp):
CCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACCTAAA
Found at i:62674346 original size:87 final size:87
Alignment explanation
Indices: 62674140--62674367 Score: 253
Period size: 88 Copynumber: 2.6 Consensus size: 87
62674130 GTCGAGCTTT
* * ** *
62674140 AACCCCTAAGCAGTAGGGTAACAAGCTGAATTTTGAAGATCTTATCACCCTAAGTAATGGGGAAA
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAA-TTTGAAGATCTTATCTCCCTAAGTAACAGAGAAA
* * * *
62674205 CAGATCGAATGCGATAGGTCTTA
65 CAGATCGAAGGCAAAAGGCCTTA
* * * * * *
62674228 AACCCCTAAGCAGTAGGGTAATAGACAGAA-TTGCAGATCTTATCTCCCTCAGTAGCAGAGAAAC
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTGAAGATCTTATCTCCCTAAGTAACAGAGAAAC
* *
62674292 AGATTGAAGGTAAAAGAGCCTTA
66 AGATCGAAGGCAAAAG-GCCTTA
*
62674315 AACCCCTAAGCAGTAGGGTAACAGGCTGAATTT-ATAGATCTTACCTCCCTAAG
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTGA-AGATCTTATCTCCCTAAG
62674368 CAGTAGTGGA
Statistics
Matches: 114, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
86 38 0.33
87 32 0.28
88 44 0.39
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (87 bp):
AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTGAAGATCTTATCTCCCTAAGTAACAGAGAAAC
AGATCGAAGGCAAAAGGCCTTA
Found at i:62676691 original size:26 final size:24
Alignment explanation
Indices: 62676651--62676710 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
62676641 TTATTTTATT
* * *
62676651 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
62676675 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
62676701 AAATAAATAT
1 AAATAAATAT
62676711 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:62676722 original size:22 final size:22
Alignment explanation
Indices: 62676681--62676739 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
62676671 ATAATAAATC
* *
62676681 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
62676701 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
62676723 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
62676740 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:62677122 original size:9 final size:9
Alignment explanation
Indices: 62677110--62677135 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
62677100 TCATATATTT
62677110 TTTTGTTTG
1 TTTTGTTTG
62677119 TTTTGTTTG
1 TTTTGTTTG
62677128 TTTTGTTT
1 TTTTGTTT
62677136 CCATTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (9 bp):
TTTTGTTTG
Found at i:62681486 original size:21 final size:21
Alignment explanation
Indices: 62681456--62681502 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
62681446 TTTTTTTATA
* *
62681456 TTTTTTAATTT-TTTGAGATT
1 TTTTTTAATTTGTTTGACAAT
62681476 TTTTTTGAATTTGTTTGACAAT
1 TTTTTT-AATTTGTTTGACAAT
62681498 TTTTT
1 TTTTT
62681503 ATATTTTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 5 0.22
22 12 0.52
ACGTcount: A:0.19, C:0.02, G:0.11, T:0.68
Consensus pattern (21 bp):
TTTTTTAATTTGTTTGACAAT
Found at i:62687614 original size:49 final size:49
Alignment explanation
Indices: 62687556--62687733 Score: 191
Period size: 49 Copynumber: 3.7 Consensus size: 49
62687546 TTTGTGTGTT
* * * *
62687556 AGTGTAAGACCTATCTGGCACATGTCATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * *
62687605 AGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * **
62687654 AGTGTAAGACCTGTTTGGGACATGGCATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
*
62687701 AGTGTAAGACCATGTCTGGGACATGGCGTCGAC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGAC
62687734 ATCTTACCCT
Statistics
Matches: 108, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
47 16 0.15
48 20 0.19
49 72 0.67
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:62689492 original size:36 final size:36
Alignment explanation
Indices: 62689440--62689511 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
62689430 GTAACATAAA
*
62689440 GGCTTGGAAAATAGCCTAAGTGTTGGCCACACAGGC
1 GGCTTGGAAAACAGCCTAAGTGTTGGCCACACAGGC
62689476 GGCTTGGAAAACAGCCTAAGTGTTGGCCACACAGGC
1 GGCTTGGAAAACAGCCTAAGTGTTGGCCACACAGGC
62689512 TGAGACACGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.24, G:0.31, T:0.18
Consensus pattern (36 bp):
GGCTTGGAAAACAGCCTAAGTGTTGGCCACACAGGC
Found at i:62689661 original size:19 final size:22
Alignment explanation
Indices: 62689637--62689687 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
62689627 ACCTAAGGAT
*
62689637 ACGGGCATGT-CCTG-G-GCAC
1 ACGGGCATGTCCCTGTGTCCAC
*
62689656 ACGGGCGTGTCCCTGTGTCCAC
1 ACGGGCATGTCCCTGTGTCCAC
62689678 ACGGGCATGT
1 ACGGGCATGT
62689688 GACTTTGTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 9 0.35
20 4 0.15
21 1 0.04
22 12 0.46
ACGTcount: A:0.14, C:0.31, G:0.35, T:0.20
Consensus pattern (22 bp):
ACGGGCATGTCCCTGTGTCCAC
Found at i:62692185 original size:38 final size:38
Alignment explanation
Indices: 62692138--62692234 Score: 133
Period size: 38 Copynumber: 2.5 Consensus size: 38
62692128 GGACTAGGAT
*
62692138 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-
1 CCGAAGGCATTCGTGCGAGTTAATAAA-CCCGGTTAAGC
* * *
62692176 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGTTAAG-C
62692215 CCGAAGGCATTCGTGCGAGT
1 CCGAAGGCATTCGTGCGAGT
62692235 CACTATAACC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
37 9 0.18
38 24 0.47
39 18 0.35
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (38 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGTTAAGC
Found at i:62700253 original size:40 final size:40
Alignment explanation
Indices: 62700115--62700296 Score: 171
Period size: 38 Copynumber: 4.7 Consensus size: 40
62700105 TCGAATGATG
* *
62700115 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * *
62700155 TCC-GACT-AGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
62700193 TCCGGGCTAAG--CCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
62700231 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
62700272 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62700297 AGCGAGTCGT
Statistics
Matches: 116, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 53 0.46
39 13 0.11
40 48 0.41
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:62700302 original size:40 final size:40
Alignment explanation
Indices: 62700166--62700304 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
62700156 CCGACTAGAT
* * * * *
62700166 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG--
1 CCGAAGGCATTTGTGCGAGTCACTAAACCCGGGTTAAGTC
* *
62700204 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTCACTAAACCCGGGTTAAGTC
* *
62700244 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTT-CGTC
1 CCGAAGGCATTTGTGCGAGTCACTA-AACCCGGG-TTAAGTC
*
62700284 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTTGTGCGAGTC
62700305 GTTATATCCG
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
38 33 0.38
40 49 0.57
41 4 0.05
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTCACTAAACCCGGGTTAAGTC
Found at i:62701973 original size:38 final size:38
Alignment explanation
Indices: 62701926--62702026 Score: 107
Period size: 38 Copynumber: 2.7 Consensus size: 38
62701916 CGTTCGGCGT
* * *
62701926 GAAATGAAGAAGAAGCGCCTTCGATTT-TTAGCATAAAA
1 GAAAAGAAGAAGAAGCGCCTTAG-TTTCTCAGCATAAAA
* *
62701964 GAAAAGAAGAAGAAGCGTCTTAGTTTCTCAGCATGAAA
1 GAAAAGAAGAAGAAGCGCCTTAGTTTCTCAGCATAAAA
* * *
62702002 -AAAAGGAGAAGAAACGTCTTAGTTT
1 GAAAAGAAGAAGAAGCGCCTTAGTTT
62702027 TCAAACTGAA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
37 26 0.47
38 29 0.53
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.23
Consensus pattern (38 bp):
GAAAAGAAGAAGAAGCGCCTTAGTTTCTCAGCATAAAA
Found at i:62702020 original size:37 final size:38
Alignment explanation
Indices: 62701955--62702026 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 38
62701945 TTCGATTTTT
*
62701955 AGCATAAAAGAAAAGAAGAAGAAGCGTCTTAGTTTCTC
1 AGCATAAAAGAAAAGAAGAAGAAACGTCTTAGTTTCTC
* *
62701993 AGCATGAAA-AAAAGGAGAAGAAACGTCTTAGTTT
1 AGCATAAAAGAAAAGAAGAAGAAACGTCTTAGTTT
62702027 TCAAACTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 23 0.74
38 8 0.26
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.21
Consensus pattern (38 bp):
AGCATAAAAGAAAAGAAGAAGAAACGTCTTAGTTTCTC
Found at i:62705739 original size:20 final size:19
Alignment explanation
Indices: 62705713--62705813 Score: 78
Period size: 20 Copynumber: 5.1 Consensus size: 19
62705703 ATAGTTGCAT
*
62705713 AACAGAGGCACCAAAGTGT
1 AACAGAGGCACCAAAGTGC
62705732 AGACAGAGGCA-CAAATGTGC
1 A-ACAGAGGCACCAAA-GTGC
* **
62705752 AATCAGAGGCATCGTAGTGC
1 AA-CAGAGGCACCAAAGTGC
* *
62705772 AAACAGAGACACCAAAGTGT
1 -AACAGAGGCACCAAAGTGC
* *
62705792 ATACAGAGGCATCGAAGTGC
1 A-ACAGAGGCACCAAAGTGC
62705812 AA
1 AA
62705814 TCCCGTACAA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
19 8 0.12
20 52 0.81
21 4 0.06
ACGTcount: A:0.41, C:0.20, G:0.27, T:0.13
Consensus pattern (19 bp):
AACAGAGGCACCAAAGTGC
Found at i:62705778 original size:40 final size:40
Alignment explanation
Indices: 62705714--62705813 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 40
62705704 TAGTTGCATA
* * * * *
62705714 ACAGAGGCACCAAAGTGTAGACAGAGGCA-CAAATGTGCAAT
1 ACAGAGGCATCGAAGTGCAAACAGAGACACCAAA-GTG-AAT
* *
62705755 -CAGAGGCATCGTAGTGCAAACAGAGACACCAAAGTGTAT
1 ACAGAGGCATCGAAGTGCAAACAGAGACACCAAAGTGAAT
62705794 ACAGAGGCATCGAAGTGCAA
1 ACAGAGGCATCGAAGTGCAA
62705814 TCCCGTACAA
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.04
40 43 0.88
41 4 0.08
ACGTcount: A:0.40, C:0.20, G:0.27, T:0.13
Consensus pattern (40 bp):
ACAGAGGCATCGAAGTGCAAACAGAGACACCAAAGTGAAT
Found at i:62705788 original size:60 final size:62
Alignment explanation
Indices: 62705693--62705815 Score: 180
Period size: 60 Copynumber: 2.0 Consensus size: 62
62705683 TACACCACAC
*
62705693 CAGAGGCATCATAGTTGCATAACAGAGGCACCAAAGTGTAGACAGAGGCA-CAAATGTGCAAT
1 CAGAGGCATCATAGTTGCATAACAGAGACACCAAAGTGTAGACAGAGGCATCAAA-GTGCAAT
* * *
62705755 CAGAGGCATCGTAG-TGCA-AACAGAGACACCAAAGTGTATACAGAGGCATCGAAGTGCAAT
1 CAGAGGCATCATAGTTGCATAACAGAGACACCAAAGTGTAGACAGAGGCATCAAAGTGCAAT
62705815 C
1 C
62705816 CCGTACAAGC
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
60 36 0.64
61 7 0.12
62 13 0.23
ACGTcount: A:0.38, C:0.20, G:0.26, T:0.15
Consensus pattern (62 bp):
CAGAGGCATCATAGTTGCATAACAGAGACACCAAAGTGTAGACAGAGGCATCAAAGTGCAAT
Found at i:62705926 original size:19 final size:20
Alignment explanation
Indices: 62705889--62705927 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
62705879 CAATCGGGCA
*
62705889 TTATACATAAATTCGTTATTT
1 TTATACAT-AATTCATTATTT
62705910 TTATACAT-ATTCATTATT
1 TTATACATAATTCATTATT
62705928 CAGAGGCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.10, G:0.03, T:0.54
Consensus pattern (20 bp):
TTATACATAATTCATTATTT
Found at i:62708106 original size:55 final size:55
Alignment explanation
Indices: 62708045--62708156 Score: 179
Period size: 55 Copynumber: 2.0 Consensus size: 55
62708035 ATATCAGTTT
* *
62708045 CCTACTCAGATCAGATTATCAGAATATCAGATCACATGAAAAAGGGTTTGATTAG
1 CCTACTCAGATCAGACTATCAGAATATCAGATCACATGAAAAAAGGTTTGATTAG
* * *
62708100 CCTACTCAGATTAGACTATTAGAATATCAGGTCACATGAAAAAAGGTTTGATTAG
1 CCTACTCAGATCAGACTATCAGAATATCAGATCACATGAAAAAAGGTTTGATTAG
62708155 CC
1 CC
62708157 CTTACAGATC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.28
Consensus pattern (55 bp):
CCTACTCAGATCAGACTATCAGAATATCAGATCACATGAAAAAAGGTTTGATTAG
Found at i:62710578 original size:21 final size:21
Alignment explanation
Indices: 62710554--62710603 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
62710544 TTTTGGAATG
*
62710554 TTGTAAATGTAAAATTATATT
1 TTGTAAATATAAAATTATATT
* *
62710575 TTGTAAA-ATAAATTTTTATT
1 TTGTAAATATAAAATTATATT
62710595 TATGTAAAT
1 T-TGTAAAT
62710604 TGATAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (21 bp):
TTGTAAATATAAAATTATATT
Found at i:62710943 original size:9 final size:9
Alignment explanation
Indices: 62710931--62710965 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
62710921 TTAAATTTAA
62710931 AAAAAAACT
1 AAAAAAACT
*
62710940 AAAAGAAATT
1 AAAA-AAACT
62710950 AAAAAAACT
1 AAAAAAACT
62710959 AAAAAAA
1 AAAAAAA
62710966 TAATAACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.80, C:0.06, G:0.03, T:0.11
Consensus pattern (9 bp):
AAAAAAACT
Found at i:62710955 original size:19 final size:18
Alignment explanation
Indices: 62710931--62710966 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
62710921 TTAAATTTAA
62710931 AAAAAAACTAAAAGAAATT
1 AAAAAAACTAAAA-AAATT
62710950 AAAAAAACTAAAAAAAT
1 AAAAAAACTAAAAAAAT
62710967 AATAACATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.78, C:0.06, G:0.03, T:0.14
Consensus pattern (18 bp):
AAAAAAACTAAAAAAATT
Found at i:62713318 original size:13 final size:13
Alignment explanation
Indices: 62713300--62713351 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
62713290 AAGTTAGATA
62713300 AAATAATTAAAAT
1 AAATAATTAAAAT
* *
62713313 AAATAACTAAGAT
1 AAATAATTAAAAT
*
62713326 AAATAAAATAAAAT
1 AAAT-AATTAAAAT
*
62713340 AATAAAATTAAA
1 AA-ATAATTAAA
62713352 GATTGGACAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 15 0.48
14 15 0.48
15 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (13 bp):
AAATAATTAAAAT
Found at i:62715136 original size:33 final size:33
Alignment explanation
Indices: 62715099--62715204 Score: 108
Period size: 33 Copynumber: 3.2 Consensus size: 33
62715089 ACTCTTTGTT
*
62715099 TGGTGTGTTGGTTGGACTAGCTCTTATAAGCAC
1 TGGTGTGTTGGTTGGATTAGCTCTTATAAGCAC
* *
62715132 TGGTGT-TATGGTTGGATTAACTCTTA-AGATCAC
1 TGGTGTGT-TGGTTGGATTAGCTCTTATA-AGCAC
* * * * *
62715165 TGGTGTGATGGTTGGATTAGTTCTTCTGAGCAT
1 TGGTGTGTTGGTTGGATTAGCTCTTATAAGCAC
62715198 TGGTGTG
1 TGGTGTG
62715205 CTGGAGGGAT
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
32 2 0.03
33 57 0.97
ACGTcount: A:0.18, C:0.11, G:0.31, T:0.40
Consensus pattern (33 bp):
TGGTGTGTTGGTTGGATTAGCTCTTATAAGCAC
Found at i:62717807 original size:43 final size:43
Alignment explanation
Indices: 62717760--62717853 Score: 104
Period size: 42 Copynumber: 2.2 Consensus size: 43
62717750 TCCTAGACGT
* * * *
62717760 GGTCTTACAT-GTAATCAGATATCGATGCC-ACTGTCCCAGATAG
1 GGTCTTACATCGAAATCAAATA-CGATGCCGA-TGTCCCAAACAG
*
62717803 GGTCTTAC-TCGAAATCAAATACGATGCCGATGTCCCAAACAT
1 GGTCTTACATCGAAATCAAATACGATGCCGATGTCCCAAACAG
62717845 GGTCTTACA
1 GGTCTTACA
62717854 CATAAATCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
GGTCTTACATCGAAATCAAATACGATGCCGATGTCCCAAACAG
Found at i:62717838 original size:42 final size:42
Alignment explanation
Indices: 62717760--62717905 Score: 127
Period size: 43 Copynumber: 3.4 Consensus size: 42
62717750 TCCTAGACGT
* * *
62717760 GGTCTTACATGTAATCAGATATCGATGCCACTGTCCCAGATAG
1 GGTCTTACACGAAATCAAATATCGATGCCA-TGTCCCAGATAG
* * * *
62717803 GGTCTTACTCGAAATCAAATA-CGATGCCGATGTCCCAAACAT
1 GGTCTTACACGAAATCAAATATCGATGCC-ATGTCCCAGATAG
* *
62717845 GGTCTTACACATAAATCTAAA-ATCGATGCCAACGTCCCAGAT-G
1 GGTCTTACAC-GAAATC-AAATATCGATGCC-ATGTCCCAGATAG
*
62717888 TAGTCTTACACGAAATCA
1 -GGTCTTACACGAAATCA
62717906 CTTATCGAAA
Statistics
Matches: 82, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
42 26 0.32
43 29 0.35
44 27 0.33
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATCGATGCCATGTCCCAGATAG
Found at i:62718052 original size:28 final size:28
Alignment explanation
Indices: 62718005--62718058 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
62717995 TTTCTCAATT
*
62718005 TCACATATTCAACTTCTATAACCATTCA
1 TCACATATTCAACTTCTATAAACATTCA
62718033 TCACA-ATTCAA-TATCATATAAACATT
1 TCACATATTCAACT-TC-TATAAACATT
62718059 AATAAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 1 0.04
27 8 0.35
28 14 0.61
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (28 bp):
TCACATATTCAACTTCTATAAACATTCA
Found at i:62726442 original size:40 final size:40
Alignment explanation
Indices: 62726397--62726526 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
62726387 CGGAATATAA
62726397 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
62726437 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
62726477 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
62726517 CCGGATATAA
1 CCGGATATAA
62726527 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:62726541 original size:40 final size:40
Alignment explanation
Indices: 62726413--62726563 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
62726403 ATAAGCATGT
* * *
62726413 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
62726453 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
62726493 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
62726533 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
62726564 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:62726547 original size:80 final size:79
Alignment explanation
Indices: 62726413--62726563 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
62726403 ATAAGCATGT
*
62726413 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
62726478 CGGATATAGCCGCTA
65 CGGATATAGCCGCTA
* * ** * *
62726493 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
62726556 CCGGATAT
64 CCGGATAT
62726564 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCGCTA
Found at i:62733920 original size:40 final size:40
Alignment explanation
Indices: 62733875--62734004 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
62733865 CGGAATATAA
62733875 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
62733915 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
62733955 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
62733995 CCGGATATAA
1 CCGGATATAA
62734005 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:62734019 original size:40 final size:40
Alignment explanation
Indices: 62733891--62734041 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
62733881 ATAAGCATGT
* * *
62733891 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
62733931 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
62733971 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
62734011 GCATAATTGTCTTCGGGGCTTAGCCC-GATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
62734042 CATTCAATTT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 7 0.08
40 83 0.90
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:62734025 original size:80 final size:79
Alignment explanation
Indices: 62733891--62734041 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 79
62733881 ATAAGCATGT
* *
62733891 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
62733956 CGGATATAGCCGCTA
66 C-GATATAGCCGCTA
* * ** * *
62733971 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
62734034 CCCGATAT
64 CCCGATAT
62734042 CATTCAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
79 8 0.13
80 53 0.87
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGATATAGCCGCTA
Found at i:62735669 original size:43 final size:43
Alignment explanation
Indices: 62735608--62735774 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
62735598 AAAGCTCGTA
* *
62735608 CAATGCCAATGTCCCAGACGTGATCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATAT
* *
62735651 CAATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAATA-
1 CAATGCCAATGTCCCAGAC-GTGGTCTTACACGTAATCAAATAT
* ** * *
62735693 CGATGCTGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-AT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGT-AATC-AAATAT
* * *
62735737 CGATGCCAATGTCCCAAACGTGGTCTTACACGAAATCA
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCA
62735775 CATTTCGAAA
Statistics
Matches: 102, Mismatches: 17, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
42 26 0.25
43 45 0.44
44 31 0.30
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATAT
Found at i:62735762 original size:86 final size:85
Alignment explanation
Indices: 62735616--62735774 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 85
62735606 TACAATGCCA
* * * *
62735616 ATGTCCCAGACGTGATCTTACATGTAATCAAATATCAATGCCACTGTCCCAGACAGGGTCTTACA
1 ATGTCCCAGACATGATCTTACACGTAATCAAATATCAATGCCAATGTCCCAAACAGGGTCTTACA
62735681 CGAAATCAAATACGATGCTG
66 CGAAATCAAATACGATGCTG
* * *
62735701 ATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAATGTCCCAAAC-GTGGTCTT
1 ATGTCCCAGACATGATCTTACACGT-AATC-AAATATCAATGCCAATGTCCCAAACAG-GGTCTT
62735764 ACACGAAATCA
63 ACACGAAATCA
62735775 CATTTCGAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 23 0.36
86 39 0.61
87 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (85 bp):
ATGTCCCAGACATGATCTTACACGTAATCAAATATCAATGCCAATGTCCCAAACAGGGTCTTACA
CGAAATCAAATACGATGCTG
Found at i:62737627 original size:22 final size:21
Alignment explanation
Indices: 62737592--62737703 Score: 71
Period size: 19 Copynumber: 5.7 Consensus size: 21
62737582 AAAAGGTATC
* *
62737592 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
62737613 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
62737636 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
62737655 T--ATATCATAT-T-TAAGAT
1 TACAAATCATATCTCTAAGAT
* *
62737672 TGCATATCATAT-T-TAAGAT
1 TACAAATCATATCTCTAAGAT
*
62737691 TGC-AATCATATCT
1 TACAAATCATATCT
62737704 AAGATTGTAT
Statistics
Matches: 80, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
17 15 0.19
18 8 0.10
19 29 0.36
21 3 0.04
22 15 0.19
23 10 0.12
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:62737635 original size:23 final size:22
Alignment explanation
Indices: 62737592--62737649 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
62737582 AAAAGGTATC
* *
62737592 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
62737613 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
62737636 TGCATATCATATCT
1 TACAAATCATATCT
62737650 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:62737652 original size:19 final size:19
Alignment explanation
Indices: 62737628--62737754 Score: 192
Period size: 19 Copynumber: 6.9 Consensus size: 19
62737618 AATCATATCT
62737628 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
62737647 TCTAAGATT--ATATCATA
1 TCTAAGATTGCATATCATA
*
62737664 TTTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
62737683 TTTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
62737701 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
62737718 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
62737737 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
62737755 TGAAGATTAT
Statistics
Matches: 100, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
17 32 0.32
18 15 0.15
19 53 0.53
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:62737672 original size:36 final size:37
Alignment explanation
Indices: 62737620--62737754 Score: 183
Period size: 36 Copynumber: 3.8 Consensus size: 37
62737610 GATTACAAAA
62737620 TCATATC-T-TCTAAGATTGCATATCATATCTAAGAT
1 TCATATCATATCTAAGATTGCATATCATATCTAAGAT
* *
62737655 T-ATATCATATTTAAGATTGCATATCATATTTAAGAT
1 TCATATCATATCTAAGATTGCATATCATATCTAAGAT
62737691 TGCA-ATCATATCTAAGATTG--TATCATATCTAAGAT
1 T-CATATCATATCTAAGATTGCATATCATATCTAAGAT
*
62737726 TGCATATCATATCTAAGATTGTATATCAT
1 T-CATATCATATCTAAGATTGCATATCAT
62737755 TGAAGATTAT
Statistics
Matches: 89, Mismatches: 4, Indels: 11
0.86 0.04 0.11
Matches are distributed among these distances:
34 5 0.06
35 20 0.22
36 42 0.47
37 15 0.17
38 7 0.08
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (37 bp):
TCATATCATATCTAAGATTGCATATCATATCTAAGAT
Found at i:62737707 original size:54 final size:55
Alignment explanation
Indices: 62737621--62737766 Score: 212
Period size: 54 Copynumber: 2.7 Consensus size: 55
62737611 ATTACAAAAT
*
62737621 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTATATCATATTTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTATATCATATCTAAGATTG
* *
62737674 CATATCATATTTAAGATTGCA-ATCATATCTAAGATTGTATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTATATCATATCTAAGATTG
* *
62737728 CATATCATATCTAAGATTGTATATCAT-T-GAAGATTATAT
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTATAT
62737767 TTCCATATGA
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
53 15 0.18
54 52 0.63
55 16 0.19
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.40
Consensus pattern (55 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTATATCATATCTAAGATTG
Found at i:62738168 original size:45 final size:45
Alignment explanation
Indices: 62738102--62739029 Score: 264
Period size: 44 Copynumber: 21.1 Consensus size: 45
62738092 GGAAGGCGAT
* *
62738102 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
62738147 ATCTGTTATCTTCGATATGCTCCTCGTCTAATATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
62738192 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
62738236 ATCTGTTATC-TCTGATTTGCTCTCGGTCTAATATAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * ** *
62738281 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTTAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* *
62738326 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * ** * *
62738373 ATC----ATCTTAGATTTGCTTCAACG--TAA-ACACGTGAAAGCCAA
1 ATCTGTTATCTTCGATCTGC-TCCCCGTCTAATACA-GAG-ACGCCAA
* * *
62738414 ATCAGCTATGTCTTCGATCTGCT-CCC-TACCAATACAGAGACGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGT-CTAATACAGAGACGCCAA
* * * ** * * **
62738460 ATC----ATCTTAGATTTGCT-TCAATGTAA-ACACGTGAAAACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACA-GAG-ACGCCAA
* * * * * * *
62738501 ATCAGCTATGTCCTCGATCTGCTCTCTG-CCAATACAGAGACGCTAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * ** * *
62738547 ATC----ATCTTAGATTTGCTTCAACG--TAA-ACAAGTGAAAGCCAA
1 ATCTGTTATCTTCGATCTGC-TCCCCGTCTAATAC-AGAG-ACGCCAA
* * * *
62738588 ATCAGCTATGTCTTCGATCTGCTCCCTG-CCAATACAGAGACGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * ** * *
62738634 ATC----ATCTT-AATTTGCTTCAACG--TAA-ACACGTGAAAGCCAA
1 ATCTGTTATCTTCGATCTGC-TCCCCGTCTAATACA-GAG-ACGCCAA
* * * * ** *
62738674 ATCAGCTATGTCCTCGATCTACTCCTTG-CCAATACAGAGACGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
62738720 ATCTGCTATCTTCGATCTGCTCTCTG-CCAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*** *
62738764 ATCTGTTATCTTCGATCTGCTCTTTG-CTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * ***
62738808 ATCTGCTATCTTCGACCTACTCTCTAAC-AATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * ** * * *
62738852 ATC----ATCTTGGATTTGCT-TCAATGTAA-ACACGTGAAAGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACA-GAG-ACGCCAA
* * * * *
62738893 ATCAGTTATGTCTTCGATCTGCTCCCTG-CCAATACAGAGATGTCAA
1 ATCTGTTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
62738939 ATCTGTTATCTTCGATCTGCTCTCTG-CCAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
62738983 ATCTGTCATCTTCGATCTGCTCCCTGAC-AATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
62739027 ATC
1 ATC
62739030 ATCTTGGATC
Statistics
Matches: 654, Mismatches: 158, Indels: 143
0.68 0.17 0.15
Matches are distributed among these distances:
38 3 0.00
39 23 0.04
40 65 0.10
41 48 0.07
42 4 0.01
43 4 0.01
44 233 0.36
45 103 0.16
46 59 0.09
47 84 0.13
48 22 0.03
49 6 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:62738267 original size:89 final size:90
Alignment explanation
Indices: 62738102--62738285 Score: 284
Period size: 89 Copynumber: 2.1 Consensus size: 90
62738092 GGAAGGCGAT
**
62738102 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATATGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATATGC
62738167 TCCTCGTCTAATATAGAGACGCCAA
66 TCCTCGTCTAATATAGAGACGCCAA
* *
62738192 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATC-TCTGATTTG
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC-GATATG
*
62738255 CT-CTCGGTCTAATATAGAGATGCCAA
65 CTCCTC-GTCTAATATAGAGACGCCAA
62738281 ATCTG
1 ATCTG
62738286 TCATCTTGGA
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
88 5 0.06
89 75 0.86
90 7 0.08
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.33
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATATGC
TCCTCGTCTAATATAGAGACGCCAA
Found at i:62738479 original size:87 final size:87
Alignment explanation
Indices: 62738330--62738722 Score: 653
Period size: 87 Copynumber: 4.5 Consensus size: 87
62738320 GGTTAGATCT
* * *
62738330 GCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAAC
1 GCTATGTCTTCGATCTGCTCCCTG-CCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAAC
62738395 GTAAACACGTGAAAGCCAAATCA
65 GTAAACACGTGAAAGCCAAATCA
* *
62738418 GCTATGTCTTCGATCTGCTCCCTACCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAATG
1 GCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACG
*
62738483 TAAACACGTGAAAACCAAATCA
66 TAAACACGTGAAAGCCAAATCA
* * *
62738505 GCTATGTCCTCGATCTGCTCTCTGCCAATACAGAGACGCTAAATCATCTTAGATTTGCTTCAACG
1 GCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACG
*
62738570 TAAACAAGTGAAAGCCAAATCA
66 TAAACACGTGAAAGCCAAATCA
62738592 GCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTA-ATTTGCTTCAACG
1 GCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACG
62738656 TAAACACGTGAAAGCCAAATCA
66 TAAACACGTGAAAGCCAAATCA
* * *
62738678 GCTATGTCCTCGATCTACTCCTTGCCAATACAGAGACGCCAAATC
1 GCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
62738723 TGCTATCTTC
Statistics
Matches: 285, Mismatches: 20, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
86 76 0.27
87 187 0.66
88 22 0.08
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (87 bp):
GCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACG
TAAACACGTGAAAGCCAAATCA
Found at i:62738749 original size:44 final size:44
Alignment explanation
Indices: 62738669--62739029 Score: 344
Period size: 44 Copynumber: 8.2 Consensus size: 44
62738659 ACACGTGAAA
* * * *
62738669 GCCAAATCAGCTATGTCCTCGATCTACTC-CTTGCCAATACAGAGAC
1 GCCAAATCTGCTA--TCTTCGATCTGCTCTC-TGCCAATACAGAGAT
62738715 GCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGAT
* * *
62738759 GCCAAATCTGTTATCTTCGATCTGCTCTTTGCTAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGAT
* * ** *
62738803 GCCAAATCTGCTATCTTCGACCTACTCTCTAACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGAT
* * * * *
62738847 GCCAAA--T-C-ATCTTGGATTTGCT-TCAATG-TAA-ACACGTGAAA
1 GCCAAATCTGCTATCTTCGATCTGCTCTC--TGCCAATACA-GAG-AT
* * *
62738888 GCCAAATCAGTTATGTCTTCGATCTGCTCCCTGCCAATACAGAGAT
1 GCCAAATCTGCTA--TCTTCGATCTGCTCTCTGCCAATACAGAGAT
* *
62738934 GTCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGAT
* * *
62738978 GCCAAATCTG-TCATCTTCGATCTGCTCCCTGACAATACAGAGAC
1 GCCAAATCTGCT-ATCTTCGATCTGCTCTCTGCCAATACAGAGAT
62739022 GCCAAATC
1 GCCAAATC
62739030 ATCTTGGATC
Statistics
Matches: 262, Mismatches: 38, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
39 5 0.02
40 14 0.05
41 9 0.03
42 1 0.00
43 1 0.00
44 185 0.71
45 2 0.01
46 26 0.10
47 15 0.06
48 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGAT
Found at i:62738778 original size:174 final size:174
Alignment explanation
Indices: 62738330--62738810 Score: 580
Period size: 174 Copynumber: 2.8 Consensus size: 174
62738320 GGTTAGATCT
* * * * * * *
62738330 GCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAAC
1 GCTATGTCCTCGATCTACTCTCTG-CCAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAAC
* * * * *
62738395 GTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTACCAATACAGAGACGCCAA
65 GCAAACAAGAGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAA
*
62738460 ATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAACCAAATCA
130 ATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCA
* * *
62738505 GCTATGTCCTCGATCTGCTCTCTGCCAATACAGAGACGCTAAATCATCTTAGATTTGCTTCAACG
1 GCTATGTCCTCGATCTACTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAACG
* * *
62738570 TAAACAAGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAA
66 CAAACAAGAGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAA
*
62738635 TCATCTTA-ATTTGCTTCAACGTAAACACGTGAAAGCCAAATCA
131 TCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCA
*
62738678 GCTATGTCCTCGATCTACTC-CTTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTC
1 GCTATGTCCTCGATCTACTCTC-TGCCAATACAGAGACGCCAAA--T-C-ATCTTAGATCTGCT-
** * * ** *
62738742 TCTGC-CAATAC-AGAG-ATGCCAAATCTG-T-TATCTTCGATCTGCTCTTTGCTAATACAGAGA
60 TCAACGCAA-ACAAGAGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCAATACAGAGA
*
62738802 TGCCAAATC
124 CGCCAAATC
62738811 TGCTATCTTC
Statistics
Matches: 274, Mismatches: 25, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
172 1 0.00
173 72 0.26
174 145 0.53
175 23 0.08
176 11 0.04
177 17 0.06
178 5 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (174 bp):
GCTATGTCCTCGATCTACTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAACG
CAAACAAGAGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAA
TCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCA
Found at i:62738887 original size:219 final size:218
Alignment explanation
Indices: 62738617--62739029 Score: 684
Period size: 219 Copynumber: 1.9 Consensus size: 218
62738607 TGCTCCCTGC
62738617 CAATACAGAGACGCCAAATCATCTTAATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
1 CAATACAGAGACGCCAAATCATCTTAATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
*
62738682 TGTCCTCGATCTACTCCTTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGC
66 TGTCCTCGATCTACTCCCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGC
* ** *
62738747 CAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTTTG-CTAATACAGAGATGCCAAATC
131 CAATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGAC-AATACAGAGACGCCAAATC
62738811 TGCTATCTTCGACCTACTCTCTAA
195 TGCTATCTTCGACCTACTCTCTAA
* * *
62738835 CAATACAGAGACGCCAAATCATCTTGGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGTT
1 CAATACAGAGACGCCAAATCATCTT-AATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCT
* * * * *
62738900 ATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGTCAAATCTGTTATCTTCGATCTGCTCTCTG
65 ATGTCCTCGATCTACTCCCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
62738965 CCAATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGACAATACAGAGACGCCAAATC
130 CCAATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGACAATACAGAGACGCCAAATC
62739030 ATCTTGGATC
Statistics
Matches: 180, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
218 25 0.14
219 154 0.86
220 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (218 bp):
CAATACAGAGACGCCAAATCATCTTAATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
TGTCCTCGATCTACTCCCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGC
CAATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGACAATACAGAGACGCCAAATCT
GCTATCTTCGACCTACTCTCTAA
Found at i:62738942 original size:175 final size:175
Alignment explanation
Indices: 62738728--62739053 Score: 546
Period size: 175 Copynumber: 1.9 Consensus size: 175
62738718 AAATCTGCTA
* * *
62738728 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTTTGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCA
*
62738793 ATACAGAGATGCCAAATCTG-CTATCTTCGACCTACTCTCTAACAATACAGAGACGCCAAATCAT
66 ATACAGAGATGCCAAATCTGTC-ATCTTCGACCTACTCCCTAACAATACAGAGACGCCAAATCAT
*
62738857 CTTGGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGTTATG
130 CTTGGATCTGCTTCAATGTAAACACGTGAAAGCCAAATCAGTTATG
*
62738903 TCTTCGATCTGCTCCCTGCCAATACAGAGATGTCAAATCTGTTATCTTCGATCTGCTCTCTGCCA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCA
* * *
62738968 ATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCCCTGACAATACAGAGACGCCAAATCATC
66 ATACAGAGATGCCAAATCTGTCATCTTCGACCTACTCCCTAACAATACAGAGACGCCAAATCATC
*
62739033 TTGGATCTGCTTCAGTGTAAA
131 TTGGATCTGCTTCAATGTAAA
62739054 TACTTAAAGG
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
175 139 0.99
176 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (175 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCA
ATACAGAGATGCCAAATCTGTCATCTTCGACCTACTCCCTAACAATACAGAGACGCCAAATCATC
TTGGATCTGCTTCAATGTAAACACGTGAAAGCCAAATCAGTTATG
Found at i:62740020 original size:14 final size:14
Alignment explanation
Indices: 62740001--62740027 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
62739991 GCCTCTCTAT
62740001 TTTTTCTTTTTTTC
1 TTTTTCTTTTTTTC
62740015 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
62740028 TCCCTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTCTTTTTTTC
Found at i:62745190 original size:19 final size:19
Alignment explanation
Indices: 62745166--62745275 Score: 172
Period size: 19 Copynumber: 5.9 Consensus size: 19
62745156 AATCATATCT
*
62745166 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
62745185 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
62745204 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
62745222 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
62745239 TCTAAGATTGCATATCTTA
1 TCTAAGATTGCATATCATA
*
62745258 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
62745276 TGAAGATTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 52 0.62
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:62746505 original size:27 final size:27
Alignment explanation
Indices: 62746474--62746529 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
62746464 TATCATTAAT
*
62746474 TTAAGTATAACACTCGCTCATTGAGTC
1 TTAAGTATAACACTCACTCATTGAGTC
*
62746501 TTAAGTATAACACTCACTTATTGAGTC
1 TTAAGTATAACACTCACTCATTGAGTC
62746528 TT
1 TT
62746530 GACTCGATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (27 bp):
TTAAGTATAACACTCACTCATTGAGTC
Found at i:62748550 original size:43 final size:43
Alignment explanation
Indices: 62748502--62748639 Score: 138
Period size: 42 Copynumber: 3.2 Consensus size: 43
62748492 TCCTAGACGT
* * *
62748502 GGTCTTACATGTAATTCAATATCGATGCCTCTGCCCCAGACAG
1 GGTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACAC
* * * *
62748545 GGTCTTACATG-AAATCAGATAT-GATGCCAATGTCCCAGAAAT
1 GGTCTTACATGTAATTCA-ATATCGATGCCTATGTCCCAGACAC
* * *
62748587 GGTCTTACACGTAAATCTCAA-ATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTACATGT-AAT-TCAATATCGATGCCTATGTCCCAGACAC
62748631 GGTCTTACA
1 GGTCTTACA
62748640 CGATATCTCA
Statistics
Matches: 77, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
42 30 0.39
43 17 0.22
44 27 0.35
45 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACAC
Found at i:62752449 original size:40 final size:39
Alignment explanation
Indices: 62752284--62752467 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
62752274 AAATTGAATG
* * *
62752284 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
62752324 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62752364 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62752404 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62752443 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62752468 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:62752492 original size:80 final size:81
Alignment explanation
Indices: 62752324--62752512 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
62752314 GCTGGAAATT
* * * *
62752324 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
62752389 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
62752405 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
62752468 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
62752484 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
62752513 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:62760568 original size:40 final size:39
Alignment explanation
Indices: 62760403--62760586 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
62760393 GAAATTGATG
* * *
62760403 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
62760443 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62760483 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62760523 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62760562 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62760587 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Done.