Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 203 of 438
Found at i:62760611 original size:80 final size:81
Alignment explanation
Indices: 62760443--62760631 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
62760433 GCTGGAAATT
* * * *
62760443 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
62760508 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
62760524 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
62760587 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
62760603 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
62760632 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:62764917 original size:40 final size:39
Alignment explanation
Indices: 62764752--62764935 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
62764742 AAATTGAATG
* * *
62764752 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
62764792 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62764832 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62764872 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62764911 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62764936 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:62764960 original size:80 final size:81
Alignment explanation
Indices: 62764792--62764980 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
62764782 GCTGGAAATT
* * * *
62764792 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
62764857 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
62764873 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
62764936 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
62764952 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
62764981 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:62766051 original size:17 final size:18
Alignment explanation
Indices: 62766009--62766057 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
62765999 AGTTGAAAAG
62766009 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
62766028 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
62766045 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
62766058 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:62766945 original size:40 final size:40
Alignment explanation
Indices: 62766879--62767045 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62766869 AAATTGAATG
* * *
62766879 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
62766918 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62766958 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62766998 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62767038 ATATCCGG
1 ATATCCGG
62767046 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62787847 original size:9 final size:8
Alignment explanation
Indices: 62787822--62787862 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
62787812 AATGAATCAT
*
62787822 TAAAAACA
1 TAAAAAAA
62787830 T-AAAAAA
1 TAAAAAAA
62787837 TAAAAATAA
1 TAAAAA-AA
62787846 TAAAAAAA
1 TAAAAAAA
62787854 TAAAAAAA
1 TAAAAAAA
62787862 T
1 T
62787863 CTATTCAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 6 0.20
8 16 0.53
9 8 0.27
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (8 bp):
TAAAAAAA
Found at i:62795084 original size:26 final size:26
Alignment explanation
Indices: 62795048--62795100 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
62795038 CCCCATGGAG
62795048 TAAGACTCGTCACAATTATAACACAA
1 TAAGACTCGTCACAATTATAACACAA
62795074 TAAGACTCGTCACAATTATAACACAA
1 TAAGACTCGTCACAATTATAACACAA
62795100 T
1 T
62795101 CCCTTAGCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.45, C:0.23, G:0.08, T:0.25
Consensus pattern (26 bp):
TAAGACTCGTCACAATTATAACACAA
Found at i:62805614 original size:43 final size:43
Alignment explanation
Indices: 62805532--62805615 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 43
62805522 ACATGAATCA
* *
62805532 CATCCATCATGAACTCGAACCTTTCAACGAGCCCAGATGCTTG
1 CATCCATAATGAACTCGAACCTCTCAACGAGCCCAGATGCTTG
* * * * *
62805575 CATCCATAATGAATTCGGACCTCTCAATGAGCTCGGATGCT
1 CATCCATAATGAACTCGAACCTCTCAACGAGCCCAGATGCT
62805616 ACATACCTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (43 bp):
CATCCATAATGAACTCGAACCTCTCAACGAGCCCAGATGCTTG
Found at i:62807348 original size:20 final size:20
Alignment explanation
Indices: 62807323--62807366 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
62807313 AACTTGCCTT
62807323 TTCTACCAAATCTCAAAACA
1 TTCTACCAAATCTCAAAACA
62807343 TTCTACCAAATCTCAAAACA
1 TTCTACCAAATCTCAAAACA
62807363 TTCT
1 TTCT
62807367 TCCATGGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.41, C:0.30, G:0.00, T:0.30
Consensus pattern (20 bp):
TTCTACCAAATCTCAAAACA
Found at i:62810368 original size:40 final size:40
Alignment explanation
Indices: 62810300--62810512 Score: 214
Period size: 40 Copynumber: 5.3 Consensus size: 40
62810290 GCGTTTGGAT
* *
62810300 AAAACACGCCGCTATAAATCGAGA-ATTAGCGGCT-CTTTTTG
1 AAAA-ACGCCGCTATAGATAGA-ACATTAGCGG-TACTTTTTG
**
62810341 AAAAACGCCGCTATAGATAGAACATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGATAGAACATTAGCGGTACTTTTTG
* *
62810381 AAAAACGCCGTTATAGATAGAGCATTAGCGGTACTTTTTG
1 AAAAACGCCGCTATAGATAGAACATTAGCGGTACTTTTTG
* * * * *
62810421 AAAAACGCCACTATAGATCGAGCATTAGCAGTGCTTTTTG
1 AAAAACGCCGCTATAGATAGAACATTAGCGGTACTTTTTG
* * * * * * *
62810461 AAAAATGCCGCTATAGGTTGACCATTAGCGGTGCTTTCTA
1 AAAAACGCCGCTATAGATAGAACATTAGCGGTACTTTTTG
62810501 AAAAATCGCCGC
1 AAAAA-CGCCGC
62810513 AAAAAAATTA
Statistics
Matches: 148, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 138 0.93
41 9 0.06
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATAGAACATTAGCGGTACTTTTTG
Found at i:62810418 original size:80 final size:79
Alignment explanation
Indices: 62810300--62810512 Score: 246
Period size: 80 Copynumber: 2.6 Consensus size: 79
62810290 GCGTTTGGAT
* * *
62810300 AAAACACGCCGCTATAAATCGAGAATTAGCGGCTCTTTTTGAAAAACGCCGCTATAGATAGAACA
1 AAAA-ACGCCGCTATAGATAGAGCATTAGCGG-TCTTTTTGAAAAACGCCGCTATAGATAGAACA
*
62810365 TTAGCGGCGCTTTTTG
64 TTAGCAGCGCTTTTTG
* * * *
62810381 AAAAACGCCGTTATAGATAGAGCATTAGCGGTACTTTTTGAAAAACGCCACTATAGATCGAGCAT
1 AAAAACGCCGCTATAGATAGAGCATTAGCGGT-CTTTTTGAAAAACGCCGCTATAGATAGAACAT
*
62810446 TAGCAGTGCTTTTTG
65 TAGCAGCGCTTTTTG
* * * * * *
62810461 AAAAATGCCGCTATAGGTTGACCATTAGCGGTGCTTTCTAAAAAATCGCCGC
1 AAAAACGCCGCTATAGATAGAGCATTAGCGGT-CTTTTTGAAAAA-CGCCGC
62810513 AAAAAAATTA
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 102 0.91
81 9 0.08
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (79 bp):
AAAAACGCCGCTATAGATAGAGCATTAGCGGTCTTTTTGAAAAACGCCGCTATAGATAGAACATT
AGCAGCGCTTTTTG
Found at i:62810602 original size:40 final size:40
Alignment explanation
Indices: 62810545--62810650 Score: 142
Period size: 40 Copynumber: 2.6 Consensus size: 40
62810535 AGCTTTAGTG
62810545 GCATTAGCGGC-ACTTTTTGAAAAACGCCGCTATAGATCGA
1 GCATTAGCGGCGA-TTTTTGAAAAACGCCGCTATAGATCGA
* * *
62810585 GCATTAGCGGCGTTTTTTGAAAAATGCCGCTATAGGTCGA
1 GCATTAGCGGCGATTTTTGAAAAACGCCGCTATAGATCGA
* * *
62810625 CCATTAGCAGTGATTTTTGAAAAACG
1 GCATTAGCGGCGATTTTTGAAAAACG
62810651 TCGCAAAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCGATTTTTGAAAAACGCCGCTATAGATCGA
Found at i:62810660 original size:143 final size:143
Alignment explanation
Indices: 62810402--62810719 Score: 460
Period size: 143 Copynumber: 2.2 Consensus size: 143
62810392 TATAGATAGA
* * *
62810402 GCATTAGCGGTACTTTTTGAAAAACGCCACTATAGATCGAGCATTAGCAGTGCTTTTTGAAAAAT
1 GCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGAAAAAT
* * *
62810467 GCCGCTATAGGTTGACCATTAGCGGTGCTTTCTAAAAAATCGCCGCAAAAAAATTAAGCACA-AT
66 GCCGCTATAGGTCGACCATTAGCAGTGATTTCTAAAAAATCGCCGC-AAAAAATTAAGCACATAT
62810531 GTTAAGCTTTAGTG
130 GTTAAGCTTTAGTG
* *
62810545 GCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGTTTTTTGAAAAAT
1 GCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGAAAAAT
* * * *
62810610 GCCGCTATAGGTCGACCATTAGCAGTGATTTTTGAAAAA-CGTCGCAAAAAATTAATCACACTTT
66 GCCGCTATAGGTCGACCATTAGCAGTGATTTCTAAAAAATCGCCGCAAAAAATTAAGCACA---T
*
62810674 ATGTTGAGCTTTAGTG
128 ATGTTAAGCTTTAGTG
*
62810690 GCATTAGCGGCGCTTTTTGAAAAACGCCGC
1 GCATTAGCGGCACTTTTTGAAAAACGCCGC
62810720 AAAAAAATTA
Statistics
Matches: 157, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
141 14 0.09
142 5 0.03
143 94 0.60
145 44 0.28
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (143 bp):
GCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTGAAAAAT
GCCGCTATAGGTCGACCATTAGCAGTGATTTCTAAAAAATCGCCGCAAAAAATTAAGCACATATG
TTAAGCTTTAGTG
Found at i:62810814 original size:15 final size:15
Alignment explanation
Indices: 62810794--62810846 Score: 72
Period size: 15 Copynumber: 3.5 Consensus size: 15
62810784 ACTATTTTAA
62810794 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
62810809 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
* *
62810823 GGTTTATGGTTTATG
1 GGTTTAGGGATTATG
62810838 GGTTATAGG
1 GGTT-TAGG
62810847 TTAAGTGTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 12 0.36
15 18 0.55
16 3 0.09
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:62810829 original size:22 final size:21
Alignment explanation
Indices: 62810804--62810916 Score: 88
Period size: 22 Copynumber: 5.2 Consensus size: 21
62810794 GGTTTAGGGA
*
62810804 TTATGGGTTTAGGGATTATGGT
1 TTATGGGTTTAGGG-TTAAGGT
62810826 TTAT-GGTTTATGGGTTATAGG-
1 TTATGGGTTTA-GGGTTA-AGGT
* *
62810847 TTAAGTG-TTAGGGTTTAAGGT
1 TTATGGGTTTAGGG-TTAAGGT
* *
62810868 TTAGGGGGTTAGGGTTTAAGGT
1 TTATGGGTTTAGGG-TTAAGGT
* *
62810890 TTAGGGGTTAAGGGTTAAAGGT
1 TTATGGGTTTAGGGTT-AAGGT
62810912 TTATG
1 TTATG
62810917 TTTTGTGGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
20 6 0.08
21 25 0.33
22 45 0.59
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (21 bp):
TTATGGGTTTAGGGTTAAGGT
Found at i:62810871 original size:14 final size:14
Alignment explanation
Indices: 62810789--62810964 Score: 72
Period size: 14 Copynumber: 12.3 Consensus size: 14
62810779 TAGTTACTAT
62810789 TTTAAGGTTTAGGG
1 TTTAAGGTTTAGGG
* *
62810803 ATTATGGGTTTAGGG
1 TTTA-AGGTTTAGGG
* * *
62810818 ATTATGGTTTATGG
1 TTTAAGGTTTAGGG
*
62810832 TTTATGGGTTATA-GG
1 TTTA-AGGTT-TAGGG
62810847 -TTAA-GTGTTAGGG
1 TTTAAGGT-TTAGGG
62810860 TTTAAGGTTTAGGGG
1 TTTAAGGTTTA-GGG
* * *
62810875 GTTAGGGTTTAAGG
1 TTTAAGGTTTAGGG
* *
62810889 TTTAGGGGTTAAGGG
1 TTTA-AGGTTTAGGG
* * *
62810904 TTAAAGGTTTATGT
1 TTTAAGGTTTAGGG
** *
62810918 TTTGTGGTTTAAGG
1 TTTAAGGTTTAGGG
*
62810932 TTTAAAGG-ATAGGG
1 TTT-AAGGTTTAGGG
* *
62810946 GTTAGGGGTTTAGGG
1 TTTA-AGGTTTAGGG
62810961 TTTA
1 TTTA
62810965 GATTAATTAG
Statistics
Matches: 119, Mismatches: 31, Indels: 23
0.69 0.18 0.13
Matches are distributed among these distances:
12 4 0.03
13 4 0.03
14 55 0.46
15 54 0.45
16 2 0.02
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:62810912 original size:29 final size:29
Alignment explanation
Indices: 62810880--62810962 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 29
62810870 AGGGGGTTAG
62810880 GGTTTAAGGTTTAGGGGTTAAGGGTTAAA
1 GGTTTAAGGTTTAGGGGTTAAGGGTTAAA
* * * *
62810909 GGTTT-ATGTTTTGTGGTTTAAGGTTTAAA
1 GGTTTAAGGTTTAG-GGGTTAAGGGTTAAA
* * * *
62810938 GG-ATAGGGGTTAGGGGTTTAGGGTT
1 GGTTTAAGGTTTAGGGGTTAAGGGTT
62810963 TAGATTAATT
Statistics
Matches: 40, Mismatches: 12, Indels: 5
0.70 0.21 0.09
Matches are distributed among these distances:
28 16 0.40
29 24 0.60
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.40
Consensus pattern (29 bp):
GGTTTAAGGTTTAGGGGTTAAGGGTTAAA
Found at i:62810939 original size:8 final size:7
Alignment explanation
Indices: 62810789--62810936 Score: 57
Period size: 7 Copynumber: 20.7 Consensus size: 7
62810779 TAGTTACTAT
62810789 TTTAAGG
1 TTTAAGG
*
62810796 TTTAGGG
1 TTTAAGG
* *
62810803 ATTATGGG
1 TTTA-AGG
*
62810811 TTTAGGG
1 TTTAAGG
* *
62810818 ATTATGG
1 TTTAAGG
*
62810825 TTTATGG
1 TTTAAGG
*
62810832 TTTATGG
1 TTTAAGG
*
62810839 GTTATAGG
1 TTTA-AGG
62810847 -TTAA-G
1 TTTAAGG
*
62810852 TGTTAGGG
1 T-TTAAGG
62810860 TTTAAGG
1 TTTAAGG
*
62810867 TTTAGGGG
1 TTTA-AGG
* *
62810875 GTTAGGG
1 TTTAAGG
62810882 TTTAAGG
1 TTTAAGG
*
62810889 TTTAGGG
1 TTTAAGG
*
62810896 GTTAAGGG
1 TTTAA-GG
*
62810904 TTAAAGG
1 TTTAAGG
* *
62810911 TTTATGT
1 TTTAAGG
**
62810918 TTTGTGG
1 TTTAAGG
62810925 TTTAAGG
1 TTTAAGG
62810932 TTTAA
1 TTTAA
62810937 AGGATAGGGG
Statistics
Matches: 108, Mismatches: 26, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
5 1 0.01
6 1 0.01
7 86 0.80
8 20 0.19
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (7 bp):
TTTAAGG
Found at i:62823166 original size:17 final size:18
Alignment explanation
Indices: 62823144--62823177 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62823134 CACATTGAAG
62823144 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
62823161 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
62823178 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:62824089 original size:27 final size:28
Alignment explanation
Indices: 62824059--62824116 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
62824049 AAATCTTACA
* *
62824059 TTCCACACATAGGGGTATTTT-AGTCAT
1 TTCCACACATAGGGGCATTTTCAGTAAT
* * *
62824086 TTCCGCCCTTAGGGGCATTTTCAGTAAT
1 TTCCACACATAGGGGCATTTTCAGTAAT
62824114 TTC
1 TTC
62824117 TCTTTATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (28 bp):
TTCCACACATAGGGGCATTTTCAGTAAT
Found at i:62824474 original size:28 final size:28
Alignment explanation
Indices: 62824431--62824533 Score: 125
Period size: 28 Copynumber: 3.7 Consensus size: 28
62824421 TGGCCCCTTT
* *
62824431 AGGCCCAATCTCATTCATTTGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * * *
62824459 GGGCCTAACCACATTCATACGGCCCATT
1 AGGCCCAATCACATTCATATGGCCCATC
* *
62824487 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
62824515 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
62824534 GTCATGCAAT
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:62827577 original size:35 final size:35
Alignment explanation
Indices: 62827535--62827606 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
62827525 TTTAATTGTG
*
62827535 TTATTAATTTATTAT-TTTAGATTTTAAATTTAAAT
1 TTATTAATTT-TTATATTTAGATTTTAAATTAAAAT
* *
62827570 TTATTAATTTTTATATTTAGTTTTTAAGTTAAAAT
1 TTATTAATTTTTATATTTAGATTTTAAATTAAAAT
62827605 TT
1 TT
62827607 TAATAATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 4 0.12
35 29 0.88
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (35 bp):
TTATTAATTTTTATATTTAGATTTTAAATTAAAAT
Found at i:62827806 original size:42 final size:41
Alignment explanation
Indices: 62827754--62827928 Score: 118
Period size: 43 Copynumber: 4.1 Consensus size: 41
62827744 TTATGCTCTT
* ** * *
62827754 TAGCGGCGTTTATGGGAAAAGCATTGCTACAGGTTTGTTCTA
1 TAGCGACGTTTATGGG-AAAGCACCGCTAAAGGTCTGTTCTA
*
62827796 TAGCGACGTTTGTGGGAAAGCACCGCTAAAGGTCTGTTCTA
1 TAGCGACGTTTATGGGAAAGCACCGCTAAAGGTCTGTTCTA
* * * * * *
62827837 TAGC-AGCATTTGTGGGAAAAAGCGCCGCGAAAGGCCATGTTCTT
1 TAGCGA-CGTTTATGGG--AAAGCACCGCTAAAGGTC-TGTTCTA
* * * * * *
62827881 TAGCGACATTTGTTGGGAAAGCGCCACTAAAGGCCATGTTCTT
1 TAGCGACGTTT-ATGGGAAAGCACCGCTAAAGGTC-TGTTCTA
62827924 TAGCG
1 TAGCG
62827929 GTATTTTTTT
Statistics
Matches: 113, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
40 1 0.01
41 34 0.30
42 14 0.12
43 44 0.39
44 15 0.13
45 5 0.04
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (41 bp):
TAGCGACGTTTATGGGAAAGCACCGCTAAAGGTCTGTTCTA
Found at i:62827903 original size:43 final size:42
Alignment explanation
Indices: 62827789--62827928 Score: 167
Period size: 43 Copynumber: 3.3 Consensus size: 42
62827779 GCTACAGGTT
* * *
62827789 TGTTCTATAGCGACGTTTGTGGGAAAGCACCGCTAAAGGTC-
1 TGTTCTATAGCGACATTTGTGGGAAAGCGCCGCTAAAGGCCA
*
62827830 TGTTCTATAGC-AGCATTTGTGGGAAAAAGCGCCGCGAAAGGCCA
1 TGTTCTATAGCGA-CATTTGTGGG--AAAGCGCCGCTAAAGGCCA
* *
62827874 TGTTCTTTAGCGACATTTGTTGGGAAAGCGCCACTAAAGGCCA
1 TGTTCTATAGCGACATTTG-TGGGAAAGCGCCGCTAAAGGCCA
*
62827917 TGTTCTTTAGCG
1 TGTTCTATAGCG
62827929 GTATTTTTTT
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
40 1 0.01
41 20 0.23
43 44 0.51
44 16 0.19
45 5 0.06
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (42 bp):
TGTTCTATAGCGACATTTGTGGGAAAGCGCCGCTAAAGGCCA
Found at i:62831069 original size:42 final size:41
Alignment explanation
Indices: 62831022--62831143 Score: 118
Period size: 43 Copynumber: 2.9 Consensus size: 41
62831012 TTAATGAGCT
*
62831022 CGGATGCTACATACCTCACGAACCCAGACCACTCAACCAGCC
1 CGGATGCTACAT-CCTCACGAACCCAGACCACTCAACAAGCC
* * * * * *
62831064 CGGATGCTTGCATCCATAATGAACTCAGACCTCTCAACAAGCT
1 CGGATGC-TACATCC-TCACGAACCCAGACCACTCAACAAGCC
* **
62831107 CAGATGCTACATTCCTCACGAACCTGGACCACTCAAC
1 CGGATGCTACA-TCCTCACGAACCCAGACCACTCAAC
62831144 GAGTTCAGAC
Statistics
Matches: 62, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.30, C:0.37, G:0.15, T:0.18
Consensus pattern (41 bp):
CGGATGCTACATCCTCACGAACCCAGACCACTCAACAAGCC
Found at i:62831100 original size:43 final size:43
Alignment explanation
Indices: 62830947--62831101 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
62830937 CATGAATCAT
* * *
62830947 ATCCATCATGAACTTAGACCTCTCAACGAGCCCGAATGCTTGC
1 ATCCATAATGAACTCAGACCTCTCAACGAGCCCGGATGCTTGC
* * * * *
62830990 ATCCATAATGAACTC-GAATCTCTTAATGAGCTCGGATGC-TAC
1 ATCCATAATGAACTCAG-ACCTCTCAACGAGCCCGGATGCTTGC
* * * * *
62831032 ATACC-TCACGAACCCAGACCACTCAACCAGCCCGGATGCTTGC
1 AT-CCATAATGAACTCAGACCTCTCAACGAGCCCGGATGCTTGC
62831075 ATCCATAATGAACTCAGACCTCTCAAC
1 ATCCATAATGAACTCAGACCTCTCAAC
62831102 AAGCTCAGAT
Statistics
Matches: 85, Mismatches: 22, Indels: 10
0.73 0.19 0.09
Matches are distributed among these distances:
42 30 0.35
43 55 0.65
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (43 bp):
ATCCATAATGAACTCAGACCTCTCAACGAGCCCGGATGCTTGC
Found at i:62831107 original size:85 final size:85
Alignment explanation
Indices: 62830962--62831143 Score: 249
Period size: 85 Copynumber: 2.1 Consensus size: 85
62830952 TCATGAACTT
* * * * ** *
62830962 AGACCTCTCAACGAGCCCGAATGCTTGCATCCATAATGAACTCGAATCTCTTAATGAGCTCGGAT
1 AGACCACTCAACCAGCCCGAATGCTTGCATCCATAATGAACTCGAACCTCTCAACAAGCTCAGAT
62831027 GCTACATACCTCACGAACCC
66 GCTACATACCTCACGAACCC
*
62831047 AGACCACTCAACCAGCCCGGATGCTTGCATCCATAATGAACTC-AGACCTCTCAACAAGCTCAGA
1 AGACCACTCAACCAGCCCGAATGCTTGCATCCATAATGAACTCGA-ACCTCTCAACAAGCTCAGA
* *
62831111 TGCTACATTCCTCACGAACCT
65 TGCTACATACCTCACGAACCC
*
62831132 GGACCACTCAAC
1 AGACCACTCAAC
62831144 GAGTTCAGAC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 1 0.01
85 84 0.99
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.20
Consensus pattern (85 bp):
AGACCACTCAACCAGCCCGAATGCTTGCATCCATAATGAACTCGAACCTCTCAACAAGCTCAGAT
GCTACATACCTCACGAACCC
Found at i:62833274 original size:28 final size:28
Alignment explanation
Indices: 62833232--62833286 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
62833222 CAATCCATAA
* *
62833232 CATACTCAATGTCTCGCACACTAAGTGC
1 CATACTCAATATCTCACACACTAAGTGC
*
62833260 CATACTCGATATCTCACACACTAAGTG
1 CATACTCAATATCTCACACACTAAGTG
62833287 TCGTACATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.25
Consensus pattern (28 bp):
CATACTCAATATCTCACACACTAAGTGC
Found at i:62833403 original size:40 final size:40
Alignment explanation
Indices: 62833273--62833405 Score: 117
Period size: 40 Copynumber: 3.3 Consensus size: 40
62833263 ACTCGATATC
* * * * *
62833273 TCACACACTAAGTGTCGTACATAGTC-GAAGCTATCTCAAA
1 TCACACACTAAGTGCCATATATAG-CAGAAGCTATGTCGAA
** * *
62833313 TTGCACACTAAGCGCCATATATAGCCGAAGCTATGTCGAA
1 TCACACACTAAGTGCCATATATAGCAGAAGCTATGTCGAA
* * *
62833353 TCACATACTAAGTGCCATATATAGCAGAAGTTATGT-TACA
1 TCACACACTAAGTGCCATATATAGCAGAAGCTATGTCGA-A
*
62833393 TCTCACACTAAGT
1 TCACACACTAAGT
62833406 ACCACAAATA
Statistics
Matches: 74, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 72 0.97
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCAGAAGCTATGTCGAA
Found at i:62845332 original size:28 final size:28
Alignment explanation
Indices: 62845292--62845345 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
62845282 ATGCCATTGA
62845292 ATACTCGATATCTCGCACACTAAGTGGC
1 ATACTCGATATCTCGCACACTAAGTGGC
*
62845320 ATACTCGATATCTCGCACATTAAGTG
1 ATACTCGATATCTCGCACACTAAGTG
62845346 TCGTACATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (28 bp):
ATACTCGATATCTCGCACACTAAGTGGC
Found at i:62845401 original size:40 final size:40
Alignment explanation
Indices: 62845357--62845468 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 40
62845347 CGTACATAAT
* *
62845357 CGAAGCTATCTCAAATCGCACACTAAGGGCCATATATAGC
1 CGAAGCTATGTCAAATCGCACACTAAGTGCCATATATAGC
** *
62845397 CGAAGCTATGTTGAATCGCACACTAAGTGCCATGTATAGC
1 CGAAGCTATGTCAAATCGCACACTAAGTGCCATATATAGC
* *
62845437 CGAAGTTATGTCATATCGCACACTAAGTGCCA
1 CGAAGCTATGTCAAATCGCACACTAAGTGCCA
62845469 CAAATAACTG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (40 bp):
CGAAGCTATGTCAAATCGCACACTAAGTGCCATATATAGC
Found at i:62851461 original size:17 final size:17
Alignment explanation
Indices: 62851439--62851495 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
62851429 AATAACATAG
62851439 AGTAAGCTTCATAGCTT
1 AGTAAGCTTCATAGCTT
* *
62851456 AGTAAGC-TCGTATG-AT
1 AGTAAGCTTCATA-GCTT
62851472 A-TAAGCTTCATAGCTT
1 AGTAAGCTTCATAGCTT
62851488 AGTAAGCT
1 AGTAAGCT
62851496 CGTATGATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 6 0.19
16 12 0.38
17 14 0.44
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (17 bp):
AGTAAGCTTCATAGCTT
Found at i:62851482 original size:32 final size:32
Alignment explanation
Indices: 62851441--62851507 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
62851431 TAACATAGAG
62851441 TAAGCTTCATAGCTTAGTAAGCTCGTATGATA
1 TAAGCTTCATAGCTTAGTAAGCTCGTATGATA
62851473 TAAGCTTCATAGCTTAGTAAGCTCGTATGATA
1 TAAGCTTCATAGCTTAGTAAGCTCGTATGATA
62851505 TAA
1 TAA
62851508 AAGCTCGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (32 bp):
TAAGCTTCATAGCTTAGTAAGCTCGTATGATA
Found at i:62851511 original size:17 final size:17
Alignment explanation
Indices: 62851491--62851525 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
62851481 ATAGCTTAGT
62851491 AAGCTCGTATGATATAA
1 AAGCTCGTATGATATAA
62851508 AAGCTCGTATGATATAA
1 AAGCTCGTATGATATAA
62851525 A
1 A
62851526 CTTATCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (17 bp):
AAGCTCGTATGATATAA
Found at i:62851764 original size:28 final size:28
Alignment explanation
Indices: 62851723--62851778 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
62851713 ATGTCGTTGA
*
62851723 ATACTCAAGGTCTCGCACACTAAGTGTC
1 ATACTCAAGATCTCGCACACTAAGTGTC
*
62851751 ATACTCAATATCTCGCACACTAAGTGTC
1 ATACTCAAGATCTCGCACACTAAGTGTC
62851779 GTACATAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
ATACTCAAGATCTCGCACACTAAGTGTC
Found at i:62851827 original size:40 final size:40
Alignment explanation
Indices: 62851763--62851899 Score: 157
Period size: 40 Copynumber: 3.4 Consensus size: 40
62851753 ACTCAATATC
* * * *
62851763 TCGCACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCAAA
* ** **
62851803 TTGCACACTAAGTGCCATATATAGCTAAAGCTATGTTGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCAAA
* * *
62851843 TCACACACTAAGTGCCATATATAGCCGAAGTTATGTCATA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCAAA
*
62851883 TCGCACAATAAGTGCCA
1 TCGCACACTAAGTGCCA
62851900 CAAATAACCG
Statistics
Matches: 78, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCAAA
Found at i:62853816 original size:18 final size:19
Alignment explanation
Indices: 62853782--62853853 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
62853772 TCATATCTTT
*
62853782 TAAGATTGCGTATCATATC
1 TAAGATTGCATATCATATC
62853801 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
*
62853819 TAAGATTGCATATCGTATC
1 TAAGATTGCATATCATATC
62853838 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
62853854 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
18 18 0.37
19 31 0.63
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:62853838 original size:37 final size:38
Alignment explanation
Indices: 62853782--62853853 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 38
62853772 TCATATCTTT
*
62853782 TAAGATTGCGTATCATATCTAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATCTAAGATTGCATATCATATC
*
62853819 TAAGATTGCATATCGTATCTAAGATTGCATATCAT
1 TAAGATTGCATATCATATCTAAGATTGCATATCAT
62853854 TGAAGATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 27 0.84
38 5 0.16
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (38 bp):
TAAGATTGCATATCATATCTAAGATTGCATATCATATC
Found at i:62854278 original size:45 final size:45
Alignment explanation
Indices: 62854229--62854351 Score: 203
Period size: 45 Copynumber: 2.7 Consensus size: 45
62854219 ATCTGCTTCC
62854229 CGTCTAATACAGAGATGCCAAATCTGTTATC-TCTAATTTGCTCCA
1 CGTCTAATACAGAGATGCCAAATCTGTTATCTTC-AATTTGCTCCA
* *
62854274 CGTCTAATACAAAGATGCCAAATCTGTTATCTTCAATTTGCTCCC
1 CGTCTAATACAGAGATGCCAAATCTGTTATCTTCAATTTGCTCCA
*
62854319 CGTCTAATACAGAGATGCCAAATCTGTCATCTT
1 CGTCTAATACAGAGATGCCAAATCTGTTATCTT
62854352 GGATCTGCTT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
45 71 0.97
46 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (45 bp):
CGTCTAATACAGAGATGCCAAATCTGTTATCTTCAATTTGCTCCA
Found at i:62854503 original size:78 final size:78
Alignment explanation
Indices: 62854374--62854668 Score: 387
Period size: 78 Copynumber: 3.8 Consensus size: 78
62854364 ATGTAAACAC
* * *
62854374 ATGAAGGTCAGATCTGCTATTTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTACTATGTCTTCGATCTACTCCTCGTCTAATACAGAGATGCCAAATCATCT
*
62854439 TAGATCTGCTTCA
66 TGGATCTGCTTCA
** * *
62854452 ATGAAGGTTCA-ATCTGTTATGTCTTTGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGG-TCAGATCTACTATGTCTTCGATCTACTCCTCGTCTAATACAGAGATGCCAAATCATC
*
62854516 TTGGAACTGCTTCA
65 TTGGATCTGCTTCA
* * * *
62854530 ATGAAGGTCAGATCTACTGTGTTTTTGATCTACTCCTCATCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTACTATGTCTTCGATCTACTCCTCGTCTAATACAGAGATGCCAAATCATCT
62854595 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * **
62854608 ATAAAGGTCAGATCTACAATGTCTTCGATCTGCT-CTCTGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTACTATGTCTTCGATCTACTCCTC-GTCTAATACAGAGATGCCAAATC
62854669 TGTTTCTTCG
Statistics
Matches: 190, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
77 6 0.03
78 181 0.95
79 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTACTATGTCTTCGATCTACTCCTCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:62877074 original size:22 final size:21
Alignment explanation
Indices: 62877039--62877114 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
62877029 AAAAGGTATC
* *
62877039 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
62877060 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
62877083 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
62877102 T-GAAATCATATCT
1 TACAAATCATATCT
62877115 AAGATTGTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
18 7 0.16
19 9 0.20
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:62877090 original size:17 final size:19
Alignment explanation
Indices: 62877075--62877186 Score: 135
Period size: 17 Copynumber: 5.9 Consensus size: 19
62877065 AATCATATCT
62877075 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
62877094 TCTAAGATTG-AAATCATA
1 TCTAAGATTGCATATCATA
62877112 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
62877129 TCTAAGATTGCATTGCAATCATA
1 TCTAAGATTGCA-T---ATCATA
*
62877152 TCAAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
62877169 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
62877187 TGAAGATTAT
Statistics
Matches: 81, Mismatches: 4, Indels: 16
0.80 0.04 0.16
Matches are distributed among these distances:
17 31 0.38
18 17 0.21
19 16 0.20
20 2 0.02
23 15 0.19
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:62877131 original size:35 final size:37
Alignment explanation
Indices: 62877052--62877186 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 37
62877042 AAATTAAATC
* *
62877052 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTGCATAATCATA---TCTAAGATTG--TATCATA
62877094 TCTAAGATTG-A-AATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATAATCATATCTAAGATTGTATCATA
*
62877129 TCTAAGATTGCATTGCAATCATATCAAAGATTGTATCATA
1 TCTAAGATTGCA-T--AATCATATCTAAGATTGTATCATA
62877169 TCTAAGATTGCAT-ATCAT
1 TCTAAGATTGCATAATCAT
62877187 TGAAGATTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 16
0.83 0.02 0.15
Matches are distributed among these distances:
35 17 0.20
36 6 0.07
37 10 0.12
39 1 0.01
40 42 0.49
41 1 0.01
42 9 0.10
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (37 bp):
TCTAAGATTGCATAATCATATCTAAGATTGTATCATA
Found at i:62882620 original size:30 final size:29
Alignment explanation
Indices: 62882559--62882628 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
62882549 TAAAAATATC
*
62882559 TAAAAATAAAAAAATAATAATAATAACTT
1 TAAAAATAAAAAAATAATAATAATAAATT
* *
62882588 TAAAAATTAAGAAA-AATCAATCAATAAATT
1 TAAAAATAAAAAAATAAT-AAT-AATAAATT
*
62882618 TAATAA-AAAAA
1 TAAAAATAAAAA
62882629 TCAATCTAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
28 3 0.09
29 18 0.55
30 12 0.36
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (29 bp):
TAAAAATAAAAAAATAATAATAATAAATT
Found at i:62883652 original size:10 final size:10
Alignment explanation
Indices: 62883639--62883710 Score: 60
Period size: 9 Copynumber: 7.4 Consensus size: 10
62883629 AAAAGTTTTT
62883639 AAAATTATAAA
1 AAAATTAT-AA
*
62883650 AAAATTATGA
1 AAAATTATAA
62883660 AAAATTATAA
1 AAAATTATAA
* *
62883670 TAAA-TCTAA
1 AAAATTATAA
*
62883679 AAAAGT-TAA
1 AAAATTATAA
*
62883688 AAAGTTAT-A
1 AAAATTATAA
*
62883697 AAAATTTTAA
1 AAAATTATAA
62883707 AAAA
1 AAAA
62883711 ATAAAACTCT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
9 21 0.43
10 20 0.41
11 8 0.16
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (10 bp):
AAAATTATAA
Found at i:62885553 original size:24 final size:25
Alignment explanation
Indices: 62885511--62885564 Score: 92
Period size: 24 Copynumber: 2.2 Consensus size: 25
62885501 ACCCCCCCAA
*
62885511 AAAAACCTAACCCCCAAAAAAAAAG
1 AAAAACCTAACCCCAAAAAAAAAAG
62885536 AAAAACCTAA-CCCAAAAAAAAAAG
1 AAAAACCTAACCCCAAAAAAAAAAG
62885560 AAAAA
1 AAAAA
62885565 AAGAAAAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 18 0.64
25 10 0.36
ACGTcount: A:0.70, C:0.22, G:0.04, T:0.04
Consensus pattern (25 bp):
AAAAACCTAACCCCAAAAAAAAAAG
Found at i:62885565 original size:25 final size:26
Alignment explanation
Indices: 62885510--62885565 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
62885500 AACCCCCCCA
*
62885510 AAAAAACCTAACCCCCAAAAAAAAAG
1 AAAAAACCTAACCCCAAAAAAAAAAG
62885536 -AAAAACCTAA-CCCAAAAAAAAAAG
1 AAAAAACCTAACCCCAAAAAAAAAAG
62885560 AAAAAA
1 AAAAAA
62885566 AGAAAAACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.71, C:0.21, G:0.04, T:0.04
Consensus pattern (26 bp):
AAAAAACCTAACCCCAAAAAAAAAAG
Found at i:62885568 original size:32 final size:32
Alignment explanation
Indices: 62885528--62885598 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
62885518 TAACCCCCAA
62885528 AAAAAAAGAAAAACCTAACCCAAAAAAAAAAG
1 AAAAAAAGAAAAACCTAACCCAAAAAAAAAAG
**
62885560 AAAAAAAGAAAAACCTAACCCAAAAAAAAACT
1 AAAAAAAGAAAAACCTAACCCAAAAAAAAAAG
62885592 AAAAAAA
1 AAAAAAA
62885599 CCCTAGCCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.76, C:0.15, G:0.04, T:0.04
Consensus pattern (32 bp):
AAAAAAAGAAAAACCTAACCCAAAAAAAAAAG
Found at i:62886171 original size:2 final size:2
Alignment explanation
Indices: 62886166--62886200 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
62886156 TAAATACTAT
*
62886166 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62886201 TTTAAATACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:62888195 original size:12 final size:12
Alignment explanation
Indices: 62888175--62888210 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
62888165 ATTCATTTAA
62888175 CATTCATGCATT
1 CATTCATGCATT
*
62888187 CATTTATGCATT
1 CATTCATGCATT
*
62888199 CATTCATTCATT
1 CATTCATGCATT
62888211 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:62895218 original size:70 final size:70
Alignment explanation
Indices: 62895046--62895230 Score: 234
Period size: 69 Copynumber: 2.6 Consensus size: 70
62895036 TAAGCCTTTT
* ** *
62895046 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGT
1 AATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACGATGAGGT
*
62895111 ATTTTC
65 AATTTC
*
62895117 AATTTTTGTGTTT--TAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACGATGA-GT
1 AATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACGATGAGGT
62895178 AATTTC
65 AATTTC
* *
62895184 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATTTTTGTTT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
62895231 ACCTTTTAAT
Statistics
Matches: 100, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
66 2 0.02
67 16 0.16
68 6 0.06
69 35 0.35
70 30 0.30
71 11 0.11
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (70 bp):
AATTTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACGATGAGGTA
ATTTC
Found at i:62895285 original size:124 final size:121
Alignment explanation
Indices: 62895131--62895474 Score: 395
Period size: 115 Copynumber: 2.9 Consensus size: 121
62895121 TTTGTGTTTT
* *
62895131 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACGATGA-GTAATTTCAATTTCTGTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTAATTTCAATTT-TGTT
*
62895194 TGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTTTTCAA
65 T-T-AA-AATCAACTCATATTGCGAGAGGTGAGTTGAAGCCTTTTAATTT-T-CTTTTTCAA
* * *
62895255 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGT-A-TT---TTTAGTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTAATTTCAATTTTGTT
** * *
62895315 TT-AAATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTTATTTTGTTTTTCAA
65 TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAAGCCTTTTAATTTTCTTTTTCAA
* *
62895370 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTGTG
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACGCTGAGGTAATTTCAA-TTT-TG
**
62895435 TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTG-AGCCT
63 TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAAGCCT
62895475 GAGGACACGC
Statistics
Matches: 187, Mismatches: 19, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
114 2 0.01
115 52 0.28
116 3 0.02
117 37 0.20
118 1 0.01
120 1 0.01
121 7 0.04
122 8 0.04
123 30 0.16
124 34 0.18
125 3 0.02
126 7 0.04
127 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.36
Consensus pattern (121 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTAATTTCAATTTTGTTT
TAAAATCAACTCATATTGCGAGAGGTGAGTTGAAGCCTTTTAATTTTCTTTTTCAA
Found at i:62895285 original size:193 final size:185
Alignment explanation
Indices: 62894874--62895309 Score: 524
Period size: 193 Copynumber: 2.3 Consensus size: 185
62894864 CTTTTCAAGG
* * * *
62894874 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGT
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTGT
** *
62894938 TGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTTA
65 TGTTTT-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGCACGATGAGGTATTTTTA
** **
62895003 GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
129 GTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTC
* * *
62895060 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTGTT
* *
62895124 GTGTTT-TAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACGATGA-GTAATTTCAA
66 GT-TTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGCACGATGAGGT-A-TT---
* *
62895186 TTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTT
125 TTT-AGTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TACTTT
62895250 TTC
183 TTC
*
62895253 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
62895310 TAGTTTTAAA
Statistics
Matches: 215, Mismatches: 20, Indels: 22
0.84 0.08 0.09
Matches are distributed among these distances:
182 2 0.01
183 7 0.03
184 37 0.17
185 24 0.11
186 36 0.17
187 4 0.02
188 4 0.02
189 1 0.00
191 1 0.00
192 36 0.17
193 44 0.20
194 19 0.09
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (185 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTGTT
GTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGCACGATGAGGTATTTTTAGT
TTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTC
Found at i:62895472 original size:71 final size:71
Alignment explanation
Indices: 62895372--62895589 Score: 249
Period size: 71 Copynumber: 3.0 Consensus size: 71
62895362 TTTTTCAAAA
*
62895372 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT-TGTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGT-T
62895436 TTTAATT
65 TTTAATT
* * *
62895443 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTGAGGACACGCTGAGGTAATTTCAATTTCTGTTC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTT-
*** **
62895508 AAAAAAA
65 TTTAATT
* * * * * *
62895515 TCAACTCGTATCGTGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCTGAGGTATTTTCAATTTCTGT
62895580 TTTTCAATT
64 TTTT-AATT
62895589 T
1 T
62895590 TCTGCCTTTC
Statistics
Matches: 119, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
71 56 0.47
72 35 0.29
74 28 0.24
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (71 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
TTAATT
Found at i:62895634 original size:94 final size:93
Alignment explanation
Indices: 62895508--62895679 Score: 220
Period size: 94 Copynumber: 1.8 Consensus size: 93
62895498 ATTTCTGTTC
* * * *
62895508 AAAAAAATCAACTCGTATCGTGAGCGGCGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCA
1 AAAAAAATCAACTCATATCGCGAGAGGCGAGTTGAGCCT-AGGCTCACACGCCGAGCTA-TTTCA
*
62895572 ATTTCTGTTTTTCAATTTTCTGCCTTTCAA
64 ATTTCTGTCTTTCAATTTTCTGCCTTTCAA
* * * * * *
62895602 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTCAAT
1 AAAAAAATCAACTCATATCGCGAGAGGCGAGTTGAGCCTAGGCTCACACGCCGAGCTATTTCAAT
62895667 TTCTGTCTTTCAA
66 TTCTGTCTTTCAA
62895680 AAAAATCAAC
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
93 21 0.32
94 45 0.68
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (93 bp):
AAAAAAATCAACTCATATCGCGAGAGGCGAGTTGAGCCTAGGCTCACACGCCGAGCTATTTCAAT
TTCTGTCTTTCAATTTTCTGCCTTTCAA
Found at i:62895710 original size:76 final size:75
Alignment explanation
Indices: 62895581--62896241 Score: 347
Period size: 74 Copynumber: 8.8 Consensus size: 75
62895571 AATTTCTGTT
* * *
62895581 TTTCAATTTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTCAA-TTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
*
62895645 TCACGCGCTGAGCT-A
62 --ACACGCTGAGCTAA
*
62895660 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
62895725 GCTGAGGTAA
66 GCTGAGCTAA
* * *
62895735 TTTCAATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
* *
62895799 ACGC-GAGGTAT
64 ACGCTGAGCTAA
* * * * * ** *
62895810 TTTCAATTT-TCGTTTTTCAATTTCTGCCTTTCAAAAA-AAAATCA-ACT-C-ATATTTCGAAGG
1 TTTCAATTTCT-GTCTTTCAA------------AAAAATCAACTCATATTGCGAGAGGT-G-AGT
* * * * * *
62895870 TGAG-TTGA-GCCTCG-GGACACGCTGA
51 TGAGCCTCAGGACACGCTG--A-GCTAA
** * *** * **
62895895 GGT-AATTTCATTTCTGTTTTTAAAATTC-ACTCATATTGC-AGAAATGAGTTGAGCCTCA-GAC
1 TTTCAATTTC-TGTCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
62895956 ACGCTGAGGTAA
64 ACGCTGAGCTAA
* ** * *
62895968 TTTCAATTTCTGT-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
** *
62896030 ATTGAGGTAA
66 GCTGAGCTAA
* * * *
62896040 TTTCAATTTCTGT-TTTC---AAAATCAACTCATATTGCAAGA-ATGAGTTGAGCCTTAAGACAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
62896100 GTTGAG-T-A
66 GCTGAGCTAA
* *
62896108 TTTCAATTTCTGT-TTTC-AAAAAATCAACTTA-ATTGTGAGAGGTGAGTTGAGCCTC-GGTTCA
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---A
* * *
62896169 CATGCTGAGGTAT
63 CACGCTGAGCTAA
*
62896182 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
62896242 ATCACACACT
Statistics
Matches: 460, Mismatches: 74, Indels: 97
0.73 0.12 0.15
Matches are distributed among these distances:
68 18 0.04
69 16 0.03
70 58 0.13
71 40 0.09
72 39 0.08
73 7 0.02
74 88 0.19
75 44 0.10
76 66 0.14
77 24 0.05
78 12 0.03
79 6 0.01
82 4 0.01
84 9 0.02
85 9 0.02
86 11 0.02
87 4 0.01
88 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (75 bp):
TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGCTAA
Found at i:62895836 original size:242 final size:237
Alignment explanation
Indices: 62895368--62896268 Score: 878
Period size: 242 Copynumber: 3.9 Consensus size: 237
62895358 TTTGTTTTTC
*
62895368 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCA-CGCTGAGGTATTTTCAATTT-
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACCGCTGAGGTA-TTTCAATTTC
* * *
62895431 TGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTGAGGACACGCTGAGGTAATTT
64 TGT-TTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* * *
62895496 CAATTTCTG-TTCAAAAAAATCAACTCGTATCGTGAGCGGCGAGTTGAGCCTCAGGTCACACGCC
128 CAATTTCTGTTTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
62895560 GAGGTATTTTCAATTTCTGTTTTTCAATTTTCTGCCTTTCAAAAA
193 GAGGTATTTTCAATTTCTGTTTTTCAATTTTCTGCCTTTCAAAAA
* * *
62895605 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TCAC-CGCTGAGGTATTTCAATTTC
* *
62895670 TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAA
64 TGT-TTT---AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
62895735 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
125 TTTCAATTTCTGTT-TCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
62895800 CG-CGAGGTATTTTCAATTT-TCGTTTTTCAA-TTTCTGCCTTTCAAAAA
189 CGCCGAGGTATTTTCAATTTCT-GTTTTTCAATTTTCTGCCTTTCAAAAA
* * *
62895847 AAAATCAACTCATATTTCGA-AGGTGAGTTGAGCCTCGG-GACACGCTGAGGTAATTTC-ATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTCAC-CGCTGAGGT-ATTTCAATTTC
**
62895909 TGTTTTTAAAATTC-ACTCATATTGC-AGAAATGAGTTGAGCCTCA-GACACGCTGAGGTAATTT
64 TG-TTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* * *** * * **
62895971 CAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAG--ACACAT
128 CAATTTCTG-TTTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
* *
62896032 TGAGG-----T-AA--------TTTCAA-TTTCTG-TTTTC-----
192 CGAGGTATTTTCAATTTCTGTTTTTCAATTTTCTGCCTTTCAAAAA
* * * * * *
62896057 AAAATCAACTCATATTGCAAGA-ATGAGTTGAGCCTTAAGACA-CGTTGAGT-ATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TAGGTCACCGCTGAGGTATTTCAATTTCT
* * * * *
62896119 GTTTTCAAAAAATCAACTTA-ATTGTGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAT
65 GTTTT--AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAA
* * * *
62896182 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
125 TTTCAATTTCTG--TTTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCAC
* * *
62896247 ACACTGTGGTATTTTTCAATTT
188 ACGCCGAGGTA-TTTTCAATTT
62896269 ATATTGCGAA
Statistics
Matches: 565, Mismatches: 58, Indels: 90
0.79 0.08 0.13
Matches are distributed among these distances:
208 9 0.02
209 7 0.01
210 45 0.08
211 24 0.04
212 1 0.00
214 24 0.04
215 8 0.01
216 12 0.02
217 34 0.06
219 9 0.02
224 2 0.00
225 2 0.00
226 2 0.00
229 4 0.01
230 4 0.01
231 34 0.06
233 28 0.05
234 19 0.03
235 11 0.02
236 8 0.01
237 37 0.07
238 9 0.02
239 35 0.06
240 6 0.01
241 17 0.03
242 98 0.17
243 27 0.05
244 49 0.09
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (237 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTCACCGCTGAGGTATTTCAATTTCTG
TTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
GTATTTTCAATTTCTGTTTTTCAATTTTCTGCCTTTCAAAAA
Found at i:62896122 original size:140 final size:140
Alignment explanation
Indices: 62895845--62896236 Score: 456
Period size: 140 Copynumber: 2.7 Consensus size: 140
62895835 GCCTTTCAAA
* **
62895845 AAAAAATCAACTCATATTTCGA-AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC-ATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACATTGAGGTAATTTCAATTT
* *
62895908 CTGTTTTTAAAATTC-ACTCATATTGCAGAAATGAGTTGAGCCTCAGACACGCTGAGGTAATTTC
65 CTGTTTTCAAAA-TCAACTCATATTGCAG-AATGAGTTGAGCCTAAGACACGCTGAGGTAATTTC
62895972 AATTTCTGTTTTC
128 AATTTCTGTTTTC
* ** * *
62895985 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACATTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACATTGAGGTAATTTCAATTT
*
62896049 CTGTTTTCAAAATCAACTCATATTGCAAGAATGAGTTGAGCCTTAAGACACGTTGA-GT-ATTTC
65 CTGTTTTCAAAATCAACTCATATTGC-AGAATGAGTTGAGCC-TAAGACACGCTGAGGTAATTTC
62896112 AATTTCTGTTTTC
128 AATTTCTGTTTTC
* * * *
62896125 AAAAAATCAACTTA-ATTGTGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACAT--TGAGGTAATTTCAAT
*
62896189 TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
63 TTCTGT-TTTC---AAAATCAACTCATATTGC-AGA-ATGAGTTGAGC
62896237 TTCAGATCAC
Statistics
Matches: 215, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
139 20 0.09
140 75 0.35
141 52 0.24
142 33 0.15
143 4 0.02
146 21 0.10
147 10 0.05
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (140 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATTGAGGTAATTTCAATTTC
TGTTTTCAAAATCAACTCATATTGCAGAATGAGTTGAGCCTAAGACACGCTGAGGTAATTTCAAT
TTCTGTTTTC
Found at i:62896131 original size:70 final size:72
Alignment explanation
Indices: 62895845--62896236 Score: 396
Period size: 70 Copynumber: 5.5 Consensus size: 72
62895835 GCCTTTCAAA
* * ***
62895845 AAAAAATCAACTCATATTTCGA-AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC-ATTT
1 AAAAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTTAAGACACGCTGAGGTAATTTCAATTT
62895908 CTGTTTT-
65 CTGTTTTC
* * *
62895915 TAAAATTC-ACTCATATTGC-AGAAATGAGTTGAGCC-TCAGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAG-AATGAGTTGAGCCTTAAGACACGCTGAGGTAATTTCAATTT
62895977 CTGTTTTC
65 CTGTTTTC
* * * **
62895985 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACATTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAG-AATGAGTTGAGCCTTAAGACACGCTGAGGTAATTTCAATTT
62896049 CTGTTTTC
65 CTGTTTTC
* *
62896057 --AAAATCAACTCATATTGCAAGAATGAGTTGAGCCTTAAGACACGTTGA-GT-ATTTCAATTTC
1 AAAAAATCAACTCATATTGCGAGAATGAGTTGAGCCTTAAGACACGCTGAGGTAATTTCAATTTC
62896118 TGTTTTC
66 TGTTTTC
* * * ** * *
62896125 AAAAAATCAACTTA-ATTGTGAGAGGTGAGTTGAGCCTCGGT-TCACATGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCT---TAAGACACGCTGAGGTAATTTCAA
62896188 TTTCTGTCTTTC
62 TTTCTGT-TTTC
*
62896200 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAATCAACTCATATTGCGAGA-ATGAGTTGAGC
62896237 TTCAGATCAC
Statistics
Matches: 276, Mismatches: 28, Indels: 29
0.83 0.08 0.09
Matches are distributed among these distances:
68 38 0.14
69 48 0.17
70 65 0.24
71 34 0.12
72 38 0.14
73 3 0.01
74 13 0.05
75 4 0.01
76 13 0.05
77 20 0.07
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (72 bp):
AAAAAATCAACTCATATTGCGAGAATGAGTTGAGCCTTAAGACACGCTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:62901948 original size:40 final size:40
Alignment explanation
Indices: 62901903--62902070 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
62901893 CGGAATACAA
62901903 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
62901943 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
62901983 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
62902023 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
62902063 CCGGATAT
1 CCGGATAT
62902071 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:62910079 original size:40 final size:41
Alignment explanation
Indices: 62909988--62910097 Score: 138
Period size: 40 Copynumber: 2.7 Consensus size: 41
62909978 ATAACCACGT
* *
62909988 GCACGAATGCCTTCGGGTCTTAGCCTGGA-TAGAACGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
62910028 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-CCG-CTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
*
62910068 GCAC-AATTGCCTTCGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
62910098 ATAATTTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
39 2 0.03
40 56 0.89
41 2 0.03
42 3 0.05
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:62914846 original size:28 final size:27
Alignment explanation
Indices: 62914785--62914853 Score: 120
Period size: 27 Copynumber: 2.5 Consensus size: 27
62914775 TAGTGAGTCT
62914785 GCACACTTAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTATATAATCAACTC
*
62914812 GCACACTTAGTGCTATATGATCCAACTC
1 GCACACTTAGTGCTATATAAT-CAACTC
62914840 GCACACTTAGTGCT
1 GCACACTTAGTGCT
62914854 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (27 bp):
GCACACTTAGTGCTATATAATCAACTC
Found at i:62919677 original size:24 final size:24
Alignment explanation
Indices: 62919645--62919755 Score: 213
Period size: 24 Copynumber: 4.6 Consensus size: 24
62919635 AATCTCAAAT
62919645 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
62919669 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
62919693 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
62919717 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
62919741 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
62919756 ACATAATAAG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 85 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:62919768 original size:24 final size:24
Alignment explanation
Indices: 62919645--62919777 Score: 196
Period size: 24 Copynumber: 5.5 Consensus size: 24
62919635 AATCTCAAAT
*
62919645 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
*
62919669 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
62919693 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
62919717 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
62919741 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
62919765 GCACTATGTGTGC
1 GCACTATGTGTGC
62919778 AACGTTTGGT
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 97 0.95
25 5 0.05
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:62925753 original size:28 final size:27
Alignment explanation
Indices: 62925692--62925761 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
62925682 ATAGTGAGTC
*
62925692 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
62925719 CGCACACTTAGTGCTATATGATCCAACT
1 CGCACACTTAGTGCTATATAAT-CAACT
62925747 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62925762 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:62928728 original size:21 final size:21
Alignment explanation
Indices: 62928681--62928729 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
62928671 CGGTTTCATG
62928681 GAAAAAAATAAATTGAAAAAT
1 GAAAAAAATAAATTGAAAAAT
62928702 GTAAAAAAA-AAATT-AATAAATT
1 G-AAAAAAATAAATTGAA-AAA-T
62928724 GAAAAA
1 GAAAAA
62928730 GAAGATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 2 0.08
21 14 0.56
22 9 0.36
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.20
Consensus pattern (21 bp):
GAAAAAAATAAATTGAAAAAT
Found at i:62933595 original size:7 final size:7
Alignment explanation
Indices: 62933585--62933613 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
62933575 AATACGATAA
62933585 ATTGATT
1 ATTGATT
62933592 ATTGATT
1 ATTGATT
62933599 ATTGATT
1 ATTGATT
62933606 ATT-ATT
1 ATTGATT
62933612 AT
1 AT
62933614 CACTTACCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (7 bp):
ATTGATT
Found at i:62940100 original size:42 final size:42
Alignment explanation
Indices: 62939934--62940150 Score: 145
Period size: 42 Copynumber: 5.1 Consensus size: 42
62939924 AAATAACAAA
* ** *
62939934 GCCATGTCCCCGACATGGTCTTACATG-GGTCTACATACCGAT
1 GCCATGTCCCAGACATGGTCTTACATGAAATCT-CATATCGAT
* * * *
62939976 GCCATATCCCAAATATGGTCTTAC--GAAGTCTCATGTTGATGCTGAT
1 GCCATGTCCCAGACATGGTCTTACATGAAATCTCA---T-AT-C-GAT
* * * * *
62940022 GCCGTGTCCCAGACATGGTCTTATACGAGA-CTTCATATTGAT
1 GCCATGTCCCAGACATGGTCTTACATGAAATC-TCATATCGAT
* *
62940064 GCCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAAC
1 GCCATGTCCCAGACATGGTCTTACATGAAATCTCATATCGAT
* * * * * *
62940106 GCCATATCCCATATATGGTTTTACATGAAATCACATACCGAT
1 GCCATGTCCCAGACATGGTCTTACATGAAATCTCATATCGAT
62940148 GCC
1 GCC
62940151 CCTGCCATAT
Statistics
Matches: 135, Mismatches: 29, Indels: 22
0.73 0.16 0.12
Matches are distributed among these distances:
40 3 0.02
41 4 0.03
42 93 0.69
43 2 0.01
44 3 0.02
45 2 0.01
46 22 0.16
47 1 0.01
48 5 0.04
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTACATGAAATCTCATATCGAT
Found at i:62940198 original size:48 final size:49
Alignment explanation
Indices: 62940106--62940327 Score: 148
Period size: 48 Copynumber: 4.6 Consensus size: 49
62940096 TCATATCAAC
* * ** * *
62940106 GCCATATCCCATATATGGTTTTACA-TGAAATCACATACCGATGCCCCT
1 GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAATGCCCAT
* * *
62940154 GCCATATCCCAGATATGGTCTTACACTGGCA-CACTTATCAATGCCGAT
1 GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAATGCCCAT
* * * * * * * *
62940202 GCCATGTCCCAGACATGATCTTACACTGGC-TCTCATATCAACGTCGAT
1 GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAATGCCCAT
* * * * * ** *
62940250 GCCATGTCCTAG-TCATGGTCTTACACTAGC-TCTCATATCAACACCGAT
1 GCCATATCCCAGAT-ATGGTCTTACACTGGCATCACATACCAATGCCCAT
* * *
62940298 GCCATGTCCCAAACATGGTCTTACACTGGC
1 GCCATATCCCAGATATGGTCTTACACTGGC
62940328 TCTTATAAAT
Statistics
Matches: 144, Mismatches: 26, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
48 141 0.98
49 3 0.02
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (49 bp):
GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAATGCCCAT
Found at i:62940330 original size:48 final size:48
Alignment explanation
Indices: 62940153--62940330 Score: 239
Period size: 48 Copynumber: 3.7 Consensus size: 48
62940143 CCGATGCCCC
* * * * * *
62940153 TGCCATATCCCAGATATGGTCTTACACTGGCACACTTATCAATGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACGCCGA
* *
62940201 TGCCATGTCCCAGACATGATCTTACACTGGCTCTCATATCAACGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACGCCGA
* * * *
62940249 TGCCATGTCCTAGTCATGGTCTTACACTAGCTCTCATATCAACACCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACGCCGA
*
62940297 TGCCATGTCCCAAACATGGTCTTACACTGGCTCT
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCT
62940331 TATAAATCAT
Statistics
Matches: 112, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 112 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAACGCCGA
Found at i:62941754 original size:28 final size:28
Alignment explanation
Indices: 62941693--62941790 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62941683 TCACAAATTG
** * *
62941693 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62941722 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62941750 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62941778 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62941791 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62949469 original size:39 final size:39
Alignment explanation
Indices: 62949350--62949533 Score: 242
Period size: 39 Copynumber: 4.7 Consensus size: 39
62949340 CTCGTTCAAA
* * ** * *
62949350 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* * * * *
62949390 GGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
*
62949430 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAAT
1 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
62949469 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
62949508 TGCCTTCGGGCTTAGCCCGGATATCA
1 TGCCTTCGGGCTTAGCCCGGATATCA
62949534 CTCGAACATT
Statistics
Matches: 126, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:62954371 original size:39 final size:39
Alignment explanation
Indices: 62954324--62954406 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
62954314 CCTTAATTCC
62954324 TCGA-GCCTTGAACGGATTTAGACATCGAACCATTGATA
1 TCGAGGCCTTGAACGGATTTAGACATCGAACCATTGATA
*
62954362 TCGAGGCCTTGAATGGATTTAGACATCGAACCATTGATA
1 TCGAGGCCTTGAACGGATTTAGACATCGAACCATTGATA
*
62954401 TTGAGG
1 TCGAGG
62954407 GATTAGGTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 4 0.10
39 38 0.90
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (39 bp):
TCGAGGCCTTGAACGGATTTAGACATCGAACCATTGATA
Found at i:62954604 original size:6 final size:6
Alignment explanation
Indices: 62954593--62954629 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
62954583 CATTTTTTTG
*
62954593 AAAAAT AAAAAT GAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
62954630 TATGAGCTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:62961866 original size:40 final size:40
Alignment explanation
Indices: 62961800--62961966 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
62961790 AAATTGAATG
* * *
62961800 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
62961839 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62961879 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62961919 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62961959 ATATCCGG
1 ATATCCGG
62961967 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62969963 original size:40 final size:39
Alignment explanation
Indices: 62969795--62969974 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
62969785 AGAAATTGAA
* *
62969795 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
62969835 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
62969875 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
62969915 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
62969955 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
62969975 TGGCCTTGGT
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:62973843 original size:40 final size:40
Alignment explanation
Indices: 62973777--62973943 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
62973767 AAATTGAATG
* * *
62973777 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
62973816 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62973856 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62973896 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62973936 ATATCCGG
1 ATATCCGG
62973944 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62977460 original size:17 final size:17
Alignment explanation
Indices: 62977434--62977469 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
62977424 TTTAGACCAA
*
62977434 AATCACATATACAATTC
1 AATCAAATATACAATTC
*
62977451 AATCAAATATACACTTC
1 AATCAAATATACAATTC
62977468 AA
1 AA
62977470 AATATGCATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (17 bp):
AATCAAATATACAATTC
Found at i:62993651 original size:32 final size:32
Alignment explanation
Indices: 62993610--62993674 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
62993600 AAGGTTGCAC
*
62993610 GGGTCGCCCAAGACGACTGGGGACCTACTATT
1 GGGTCGCCCAAGACGACTAGGGACCTACTATT
*
62993642 GGGTCGCCCAAGATGACTAGGGACCTACTATT
1 GGGTCGCCCAAGACGACTAGGGACCTACTATT
62993674 G
1 G
62993675 TGTCATAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.20
Consensus pattern (32 bp):
GGGTCGCCCAAGACGACTAGGGACCTACTATT
Found at i:62995570 original size:55 final size:55
Alignment explanation
Indices: 62995505--62995608 Score: 199
Period size: 55 Copynumber: 1.9 Consensus size: 55
62995495 CATTTAGCCT
62995505 AATCAATATCCACAAATCAACCATTTGCTACTCATAATGCCTATTACCACAAGCA
1 AATCAATATCCACAAATCAACCATTTGCTACTCATAATGCCTATTACCACAAGCA
*
62995560 AATCAATATCCACAAATCAACCGTTTGCTACTCATAATGCCTATTACCA
1 AATCAATATCCACAAATCAACCATTTGCTACTCATAATGCCTATTACCA
62995609 TTAAGCATCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.38, C:0.29, G:0.06, T:0.27
Consensus pattern (55 bp):
AATCAATATCCACAAATCAACCATTTGCTACTCATAATGCCTATTACCACAAGCA
Found at i:62995635 original size:55 final size:54
Alignment explanation
Indices: 62995505--62995626 Score: 156
Period size: 55 Copynumber: 2.2 Consensus size: 54
62995495 CATTTAGCCT
* *
62995505 AATCAATATCCACAAATCAACCATTTGCTACTCATAATGCCTATTACCACAAGC
1 AATCAACAACCACAAATCAACCATTTGCTACTCATAATGCCTATTACCACAAGC
* * * *
62995559 AAATCAATATCCACAAATCAACCGTTTGCTACTCATAATGCCTATTACCATTAAGC
1 -AATCAACAACCACAAATCAACCATTTGCTACTCATAATGCCTATTACCA-CAAGC
62995615 -ATCACACAACCA
1 AATCA-ACAACCA
62995627 TCATTCAACA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
54 4 0.07
55 53 0.87
56 4 0.07
ACGTcount: A:0.39, C:0.30, G:0.06, T:0.25
Consensus pattern (54 bp):
AATCAACAACCACAAATCAACCATTTGCTACTCATAATGCCTATTACCACAAGC
Found at i:62995960 original size:14 final size:14
Alignment explanation
Indices: 62995941--62995970 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
62995931 AAAAATAAAG
62995941 TAAGCTTTATAGCT
1 TAAGCTTTATAGCT
62995955 TAAGCTTTATAGCT
1 TAAGCTTTATAGCT
62995969 TA
1 TA
62995971 GTAAGCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (14 bp):
TAAGCTTTATAGCT
Found at i:62996944 original size:21 final size:20
Alignment explanation
Indices: 62996916--62996954 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
62996906 CAAAACTTGT
62996916 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
62996936 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
62996955 CAAAACACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:62999445 original size:3 final size:3
Alignment explanation
Indices: 62999437--62999469 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
62999427 ATGTTACCAC
62999437 ATT ATT ATT ATT ATT ATT ATT ATT ATAT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT AT
62999470 CACATTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:63003983 original size:46 final size:46
Alignment explanation
Indices: 63003796--63003969 Score: 285
Period size: 46 Copynumber: 3.8 Consensus size: 46
63003786 ATATATATAT
* * * *
63003796 ATATACATCTCATACATATCTCACATTAGCCATTCGACTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGACTTTACCTC
* *
63003842 ATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGACTTTACCTC
*
63003888 ATATCCATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGACTTTACCTC
63003934 ATATCCATCTCATACACATTTCGCATTAGCCATTCG
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCG
63003970 GCTTCGCCAC
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 120 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
ATATCCATCTCATACACATTTCGCATTAGCCATTCGACTTTACCTC
Found at i:63004028 original size:47 final size:47
Alignment explanation
Indices: 63003997--63004329 Score: 580
Period size: 47 Copynumber: 7.1 Consensus size: 47
63003987 CACTTCCACG
**
63003997 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
63004044 TTCATCACATTGGCCATTCGGCCTTATTACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
63004091 TTCATCACATTGGCCATTCGGCCTTATCAC--ACATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
63004136 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
63004183 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
63004230 TTCATCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
63004277 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
63004324 TTCATC
1 TTCATC
63004330 TCATAAAATC
Statistics
Matches: 273, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
45 43 0.16
47 230 0.84
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:63004154 original size:186 final size:187
Alignment explanation
Indices: 63003957--63004329 Score: 572
Period size: 186 Copynumber: 2.0 Consensus size: 187
63003947 ACACATTTCG
* * *
63003957 CATTAGCCATTCGG-CTTCGCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTACC
1 CATTAGCCATTCGGCCTT-ACCACATATATACA-TGTCCACATTCATCACATTGGCCATTCGACC
* *
63004020 TTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATTACATATATGCATG
64 TTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATGCATG
63004085 TTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ACATGCAAGTTCACATTCATCA
129 TTCACATTCATCACATTGGCCATTCGGCCTTATCACAACATGCAAGTTCACATTCATCA
* * * * * *
63004143 CATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATACATGTCCACATTCATCACATTGGCCATTCGACCTT
*
63004208 ATCACGTATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATGCATGTT
66 ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATGCATGTT
* *
63004273 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
131 CACATTCATCACATTGGCCATTCGGCCTTATCACA-ACATGCAAGTTCACATTCATC
63004330 TCATAAAATC
Statistics
Matches: 169, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
185 1 0.01
186 146 0.86
187 3 0.02
188 19 0.11
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (187 bp):
CATTAGCCATTCGGCCTTACCACATATATACATGTCCACATTCATCACATTGGCCATTCGACCTT
ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATGCATGTT
CACATTCATCACATTGGCCATTCGGCCTTATCACAACATGCAAGTTCACATTCATCA
Found at i:63004365 original size:141 final size:136
Alignment explanation
Indices: 63003997--63004354 Score: 452
Period size: 139 Copynumber: 2.6 Consensus size: 136
63003987 CACTTCCACG
** ** *
63003997 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT-GAAAAT
* * *
63004062 CGGCCTTATTACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATGC
65 --GCCTTATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATGC
63004127 AAGTTCACA
128 AAGTTCACA
* ** *
63004136 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT-GAAAAT
** *
63004201 CGGCCTTATCACGTATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATAT
65 --GCCTTATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCAC--ACAT
*
63004266 GCATGTTCACA
126 GCAAGTTCACA
*
63004277 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCTCA-T-AAAAT-
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGAAAATG
63004339 CCTATATCAAAATATA
66 CCT-TATC-AAATATA
63004355 AATTTTCATG
Statistics
Matches: 200, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
135 3 0.01
136 4 0.02
137 5 0.03
138 2 0.01
139 118 0.59
140 1 0.00
141 67 0.34
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.34
Consensus pattern (136 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGAAAATG
CCTTATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATGCAAG
TTCACA
Found at i:63015145 original size:21 final size:20
Alignment explanation
Indices: 63015108--63015149 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
63015098 TGTTCAAGGA
*
63015108 AAGCCGATTGATCCATCTAAG
1 AAGCCGATTCATCCATC-AAG
63015129 AAGCCAGATTCAT-CATCAAG
1 AAGCC-GATTCATCCATCAAG
63015149 A
1 A
63015150 CTGAAGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 9 0.47
22 6 0.32
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (20 bp):
AAGCCGATTCATCCATCAAG
Found at i:63018208 original size:21 final size:21
Alignment explanation
Indices: 63018160--63018209 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
63018150 TACATGCAAT
*
63018160 CAAACATCGATGCCACTGTCC
1 CAAACATGGATGCCACTGTCC
63018181 C-AACATGGATGCCACTGTCC
1 CAAACATGGATGCCACTGTCC
63018201 CAAACATGG
1 CAAACATGG
63018210 TCTTACACGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (21 bp):
CAAACATGGATGCCACTGTCC
Found at i:63018251 original size:42 final size:40
Alignment explanation
Indices: 63018188--63018304 Score: 112
Period size: 42 Copynumber: 2.8 Consensus size: 40
63018178 TCCCAACATG
* *
63018188 GATGCCACTGTCCCAAACATGGTCTTACACGAAATCAGATA-C
1 GATGCCAATGT-CCAGACATGGTCTTACACGAAAT-AGA-AGC
*
63018230 GATG-CAGATGTCTCAGACATGGTCTTACATGTAAAATAGAAGTC
1 GATGCCA-ATGTC-CAGACATGGTCTTACACG--AAATAGAAG-C
*
63018274 GATGCCAATGTCCAGACGTGGTCTTACACGA
1 GATGCCAATGTCCAGACATGGTCTTACACGA
63018305 TAACACATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
41 4 0.06
42 24 0.38
43 19 0.30
44 14 0.22
45 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (40 bp):
GATGCCAATGTCCAGACATGGTCTTACACGAAATAGAAGC
Found at i:63022682 original size:131 final size:131
Alignment explanation
Indices: 63022063--63022680 Score: 405
Period size: 131 Copynumber: 4.7 Consensus size: 131
63022053 TCCAAAGAGA
* ** * * * * * * *
63022063 TATTCGATTATTTTGAACAAACGGGAAATTGCAATCCAGCACGATAGGGTACTATTCCCCGAATC
1 TATTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGATAGGGCACGATTCCGCAAATT
* * * * * *** ** * *
63022128 GCCAAACATTGATTATCGCCTTCGTTTTAAAGGGTTTTTAGAAA-ATGTGAGGGAAATTCTGAAG
66 GCCAAACATCGAATCTCGTCTTCATTTTAAATAATTTTTA-AAAGACATGAGTGAAATTTTGAAG
63022192 GG
130 GG
* * * * * * * * ** * *
63022194 ATCTTCAATTGTTTCGAACCAATGAAAAAGCGCAACCCAACATGATAGGGCACGATT-CTCAAAT
1 -TATTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGATAGGGCACGATTCCGCAAAT
* * * * * *
63022258 CGCCAAACATTGAA-CATCGTCTTTATTTTTAAATAATTTTTATAAG-CATGAGTGAGAA-TATA
65 TGCCAAACATCGAATC-TCGTCTTCA-TTTTAAATAATTTTTAAAAGACATGAGTGA-AATTTTG
*
63022320 AAGGAA
127 AAGG-G
* ** * ** *
63022326 TGTTCGATCGTTTTGAGCAAACG-AGAAATCAG-AACCCAGTACGATAGGGCATGATTCTCG--A
1 TATTCGATTATTTTGAGCAAACGCA-AAAT-TGCAACCCAACACGATAGGGCACGATTC-CGCAA
* * * * * * * * * *
63022387 ATTGTCAAACACCGAATATTGCCTTCGTTTTAAATAATTTTTAGAAGATACGAATGAAATTTTGA
63 ATTGCCAAACATCGAATCTCGTCTTCATTTTAAATAATTTTTAAAAGACATGAGTGAAATTTTGA
63022452 AGGG
128 AGGG
* * * **
63022456 ATACTT-GATTATTTTGAGCAAACGCGAAATTGCAACCCAACAAGTTAGGGCACGATTCCGTGAA
1 -TA-TTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGATAGGGCACGATTCCGCAAA
* * * * *
63022520 TTGCTAAATATCGAATCTTGTC-TCTGTTTTGAA-AATTTTTAAAAGACATGAGTGAAATTTTGA
64 TTGCCAAACATCGAATCTCGTCTTC-ATTTTAAATAATTTTTAAAAGACATGAGTGAAATTTTGA
63022583 AGTGG
128 AG-GG
* *
63022588 TATTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCAAGATTCCGCAAATT
1 TATTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGATAGGGCACGATTCCGCAAATT
63022653 GCCAAACATCGAATCTCGTCTTCATTTT
66 GCCAAACATCGAATCTCGTCTTCATTTT
63022681 GAGGAATTTT
Statistics
Matches: 372, Mismatches: 92, Indels: 45
0.73 0.18 0.09
Matches are distributed among these distances:
130 27 0.07
131 256 0.69
132 88 0.24
133 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (131 bp):
TATTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGATAGGGCACGATTCCGCAAATT
GCCAAACATCGAATCTCGTCTTCATTTTAAATAATTTTTAAAAGACATGAGTGAAATTTTGAAGG
G
Found at i:63025122 original size:29 final size:29
Alignment explanation
Indices: 63025061--63025122 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
63025051 TTTGTTGGTT
* * *
63025061 TTTTATTATATTTATTTATTCATTTTTTA
1 TTTTATTATATTTATTTATACATATTTGA
*
63025090 TTTTATTTTATTT-TTTATACATATTTGA
1 TTTTATTATATTTATTTATACATATTTGA
63025118 GTTTT
1 -TTTT
63025123 TAGTAGGCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 12 0.43
29 16 0.57
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (29 bp):
TTTTATTATATTTATTTATACATATTTGA
Found at i:63027284 original size:40 final size:40
Alignment explanation
Indices: 63027239--63027406 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
63027229 CGGAATATAA
63027239 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
63027279 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63027319 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63027359 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
63027399 CCGGATAT
1 CCGGATAT
63027407 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63027389 original size:80 final size:80
Alignment explanation
Indices: 63027255--63027404 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
63027245 ATAATCACGT
*
63027255 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
63027319 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
63027335 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
63027398 CCCGGAT
64 CCCGGAT
63027405 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:63035303 original size:40 final size:40
Alignment explanation
Indices: 63035258--63035425 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
63035248 CGGAATATAA
63035258 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63035298 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63035338 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63035378 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
63035418 CCGGATAT
1 CCGGATAT
63035426 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63035408 original size:80 final size:80
Alignment explanation
Indices: 63035274--63035423 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
63035264 ATAATCACGT
*
63035274 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
63035338 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
63035354 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
63035417 CCCGGAT
64 CCCGGAT
63035424 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:63041519 original size:59 final size:58
Alignment explanation
Indices: 63041403--63041563 Score: 250
Period size: 59 Copynumber: 2.7 Consensus size: 58
63041393 GACAAGATTG
* * * * *
63041403 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATATA
*
63041462 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAACTGAAAA-TATATA
63041521 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
63041564 GATTCACTAT
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
58 26 0.27
59 69 0.73
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:63041552 original size:88 final size:88
Alignment explanation
Indices: 63041403--63041563 Score: 268
Period size: 88 Copynumber: 1.8 Consensus size: 88
63041393 GACAAGATTG
* * * *
63041403 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
63041468 AGTGTGCGAGCTGAAAATATATA
66 AGTGTGCGAGCTGAAAATATATA
* *
63041491 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
63041556 AGTGTGCG
66 AGTGTGCG
63041564 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 67 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (88 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
AGTGTGCGAGCTGAAAATATATA
Found at i:63041575 original size:29 final size:29
Alignment explanation
Indices: 63041403--63041563 Score: 250
Period size: 29 Copynumber: 5.5 Consensus size: 29
63041393 GACAAGATTG
* * * * *
63041403 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
*
63041433 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
63041462 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
63041491 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
63041521 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
63041550 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63041564 GATTCACTAT
Statistics
Matches: 123, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
29 75 0.61
30 48 0.39
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:63043025 original size:44 final size:44
Alignment explanation
Indices: 63042961--63043777 Score: 919
Period size: 44 Copynumber: 18.6 Consensus size: 44
63042951 TTGGGGTGTT
*
63042961 ACAATCACAGAGACGCCAAATCTG-TGATCTTCGATCTGCCCTCTG
1 ACAAT-ACAGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTG
*
63043006 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * * *
63043050 CCAATACAGAGTCGCCAAATCTACTATCTTCGATCTACCCTCTG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * *
63043094 ACAAT-CAGAGATGCCAAATCTGCTATCTTCGATCTACTCTC-C
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * *
63043136 ACCAATACAGAGATGCCAAATCTACTATATTCGATCTGCTCTC-C
1 A-CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* *
63043180 ACCAATACAGAGACGCCAAATCTTCTATCTTCGATCTACTCTCTG
1 A-CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * * *
63043225 TCAACACAGAGATGCCAAATCTGCTATTTTCGATCTACTCTCTG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * * *
63043269 CCAATACTGAGACGTCAAATCTGCTAGCTTCGATTTGCTCTCTG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * *
63043313 TCAATCACAGAGACGTCAAATCTG-TGATCTTTGATCTGCCCTCTG
1 ACAAT-ACAGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTG
* *
63043358 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * *
63043402 CCAATACAGAGACGCCAAATCTACTATCTTCGATCTACCCTCTG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * *
63043446 ACAAT-CAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCCG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * * *
63043489 CCAATACAGAGACACCAAATCTACTATATTCGATCTGCTCTC-C
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* **
63043532 ACCAATACAGAGACGCCAAATCTTCTATCTTCGATCTATTCTCTG
1 A-CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * * * *
63043577 TCAACACAGTGATGCCAAATCTGCTATTTTCGATCTGCTCTCTG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* *** * ** *
63043621 CCAATACAGAGACGTTGAATCTGCTAGCTTCGATCTATTCTCCG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* * *
63043665 CCAATATAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
*
63043709 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTG
1 ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
* **
63043753 CCAATACAGAGGTGCCAAATCTGCT
1 ACAATACAGAGACGCCAAATCTGCT
63043778 GGATTGGCCA
Statistics
Matches: 656, Mismatches: 106, Indels: 21
0.84 0.14 0.03
Matches are distributed among these distances:
42 1 0.00
43 74 0.11
44 538 0.82
45 43 0.07
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.28
Consensus pattern (44 bp):
ACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
Found at i:63043606 original size:352 final size:352
Alignment explanation
Indices: 63042962--63043774 Score: 1387
Period size: 352 Copynumber: 2.3 Consensus size: 352
63042952 TGGGGTGTTA
*
63042962 CAATCACAGAGACGCCAAATCTGTGATCTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATC
1 CAATCACAGAGACGCCAAATCTGTGATCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATC
*
63043027 TGCTATCTTCGATCTGCTCTCCGCCAATACAGAGTCGCCAAATCTACTATCTTCGATCTACCCTC
66 TGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTACTATCTTCGATCTACCCTC
* **
63043092 TGACAATCAGAGATGCCAAATCTGCTATCTTCGATCTACTCTCCACCAATACAGAGATGCCAAAT
131 TGACAATCAGAGATGCCAAATCTACTATCTTCGATCTACTCTCCACCAATACAGAGACACCAAAT
63043157 CTACTATATTCGATCTGCTCTCCACCAATACAGAGACGCCAAATCTTCTATCTTCGATCTACTCT
196 CTACTATATTCGATCTGCTCTCCACCAATACAGAGACGCCAAATCTTCTATCTTCGATCTACTCT
*
63043222 CTGTCAACACAGAGATGCCAAATCTGCTATTTTCGATCTACTCTCTGCCAATACTGAGACGTCAA
261 CTGTCAACACAGAGATGCCAAATCTGCTATTTTCGATCTACTCTCTGCCAATACAGAGACGTCAA
* * * *
63043287 ATCTGCTAGCTTCGATTTGCTCTCTGT
326 ATCTGCTAGCTTCGATCTACTCTCCGC
* *
63043314 CAATCACAGAGACGTCAAATCTGTGATCTTTGATCTGCCCTCTGACAATACAGAGATGCCAAATC
1 CAATCACAGAGACGCCAAATCTGTGATCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATC
63043379 TGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTACTATCTTCGATCTACCCTC
66 TGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTACTATCTTCGATCTACCCTC
* *
63043444 TGACAATCAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCCGCCAATACAGAGACACCAAAT
131 TGACAATCAGAGATGCCAAATCTACTATCTTCGATCTACTCTCCACCAATACAGAGACACCAAAT
*
63043509 CTACTATATTCGATCTGCTCTCCACCAATACAGAGACGCCAAATCTTCTATCTTCGATCTATTCT
196 CTACTATATTCGATCTGCTCTCCACCAATACAGAGACGCCAAATCTTCTATCTTCGATCTACTCT
* * **
63043574 CTGTCAACACAGTGATGCCAAATCTGCTATTTTCGATCTGCTCTCTGCCAATACAGAGACGTTGA
261 CTGTCAACACAGAGATGCCAAATCTGCTATTTTCGATCTACTCTCTGCCAATACAGAGACGTCAA
*
63043639 ATCTGCTAGCTTCGATCTATTCTCCGC
326 ATCTGCTAGCTTCGATCTACTCTCCGC
*
63043666 CAAT-ATAGAGACGCCAAATCTGCT-ATCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAAT
1 CAATCACAGAGACGCCAAATCTG-TGATCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAAT
* **
63043729 CTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGGTGCCAAATCT
65 CTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCT
63043775 GCTGGATTGG
Statistics
Matches: 434, Mismatches: 26, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
351 97 0.22
352 337 0.78
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.28
Consensus pattern (352 bp):
CAATCACAGAGACGCCAAATCTGTGATCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATC
TGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTACTATCTTCGATCTACCCTC
TGACAATCAGAGATGCCAAATCTACTATCTTCGATCTACTCTCCACCAATACAGAGACACCAAAT
CTACTATATTCGATCTGCTCTCCACCAATACAGAGACGCCAAATCTTCTATCTTCGATCTACTCT
CTGTCAACACAGAGATGCCAAATCTGCTATTTTCGATCTACTCTCTGCCAATACAGAGACGTCAA
ATCTGCTAGCTTCGATCTACTCTCCGC
Found at i:63055601 original size:119 final size:119
Alignment explanation
Indices: 63055374--63055624 Score: 344
Period size: 119 Copynumber: 2.1 Consensus size: 119
63055364 TCTAAATAAT
* **
63055374 TTTTAGAAGATATGAATGAAATTTTGAAGGGATACTCGATTATTTTGAGCAAACGTGAAATTGCA
1 TTTT-GAAGA-ATGAATGAAATTTTGAAGGGATACTCGATTATTTTGAACAAACGCAAAATTGCA
* * *
63055439 ACCCAACACGTTAGGGCACGATTCTGCGAATTGCTAAATATCGAATCTCATC-TCTG
64 ACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCGAATCTCATCTTC-G
* * *
63055495 TTTTGAAGAATGAGTGAAATTTTGAAGTGG-TATTCGATTATTTTGAACAAATGCAAAATTGCAA
1 TTTTGAAGAATGAATGAAATTTTGAAG-GGATACTCGATTATTTTGAACAAACGCAAAATTGCAA
* *
63055559 CCTAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCGAATCTCGTCTTCG
65 CCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCGAATCTCATCTTCG
*
63055614 TTTTGAGGAAT
1 TTTTGAAGAAT
63055625 TTTTGAATGA
Statistics
Matches: 116, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
119 103 0.89
120 9 0.08
121 4 0.03
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (119 bp):
TTTTGAAGAATGAATGAAATTTTGAAGGGATACTCGATTATTTTGAACAAACGCAAAATTGCAAC
CCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCGAATCTCATCTTCG
Found at i:63058061 original size:21 final size:22
Alignment explanation
Indices: 63058035--63058089 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
63058025 TTGTTGGTTT
63058035 TTTATTATATTTA-TTTATTCA
1 TTTATTATATTTATTTTATTCA
**
63058056 TTTATTAT-TTTATTTTATTTT
1 TTTATTATATTTATTTTATTCA
63058077 TTTATATATATTT
1 TTTAT-TATATTT
63058090 GGGTTTTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 4 0.14
21 19 0.66
22 3 0.10
23 3 0.10
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTATTATATTTATTTTATTCA
Found at i:63074490 original size:28 final size:28
Alignment explanation
Indices: 63074459--63074515 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
63074449 TGTTGCTATT
63074459 TATTTGCATGTGAACTTACGAAGCTTTA
1 TATTTGCATGTGAACTTACGAAGCTTTA
* *
63074487 TATTTTCATGTGAACTTACTAAGCTTTA
1 TATTTGCATGTGAACTTACGAAGCTTTA
63074515 T
1 T
63074516 GCTTACTCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (28 bp):
TATTTGCATGTGAACTTACGAAGCTTTA
Found at i:63077115 original size:40 final size:40
Alignment explanation
Indices: 63077070--63077197 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 40
63077060 CAGGGTCAAC
* *
63077070 TCCCGAAGGCATTTGTGTGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGCTAAG
* * * *
63077110 TCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAT
1 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGCTAAG
* * * * * *
63077150 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATG
1 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGCTAAG
63077190 TCCCGAAG
1 TCCCGAAG
63077198 ACAATCGAGT
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGCTAAG
Found at i:63077222 original size:80 final size:80
Alignment explanation
Indices: 63077053--63077223 Score: 173
Period size: 80 Copynumber: 2.1 Consensus size: 80
63077043 GTGCTAAGTG
* * * * * * *
63077053 ACTAAATCAGGG-TCAACTCCCGAAGGCATTTGTGTGAGTTACCAAAACCGGGTTAAGTCCCGAA
1 ACTAAATCCGGGCT-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
* * * *
63077117 GGCATTCGTGCGAGTT
65 GACAATCGAGCGAGTC
* * *
63077133 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
*
63077198 ACAATCGAGTGAGTC
66 ACAATCGAGCGAGTC
* *
63077213 GCTACATCCGG
1 ACTAAATCCGG
63077224 TTAAATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
80 72 0.99
81 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:63085187 original size:40 final size:40
Alignment explanation
Indices: 63085085--63085265 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 40
63085075 TTCGAATGGT
* * * *
63085085 ATCCGGGCTAAGTCCAGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAA
* * *
63085126 ATCCGGG-TCAACTCCCAAAGGCATTTGTGTGAGTTACCAAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGTGAGTTA-CTAA
* * *
63085167 AT-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAA
* * * * *
63085206 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTA-A
*
63085247 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
63085266 ACAATCGAGT
Statistics
Matches: 115, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
39 5 0.04
40 79 0.69
41 31 0.27
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAA
Found at i:63085261 original size:80 final size:81
Alignment explanation
Indices: 63085087--63085265 Score: 191
Period size: 80 Copynumber: 2.2 Consensus size: 81
63085077 CGAATGGTAT
* * * *
63085087 CCGGGCTAAGTCCAGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCAAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCAAAGGCAATT
* * *
63085152 GTGTGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * * * * *
63085168 TCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AACTCCCAAAGGCAAT
* *
63085231 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
63085248 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
63085266 ACAATCGAGT
Statistics
Matches: 79, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
79 1 0.01
80 55 0.70
81 23 0.29
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCAAAGGCAATT
GTGCGAATCACCAAAA
Found at i:63089524 original size:43 final size:43
Alignment explanation
Indices: 63089413--63089748 Score: 478
Period size: 43 Copynumber: 7.9 Consensus size: 43
63089403 TCTGAATTCA
* * * *
63089413 TTCACCGGTATT-TCGCCTGCTAGGCTCGAAGCCAGATATTA-
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* *
63089454 TTCACCGGTATTATAGCCTGCTAGGCTCGAGGCCTGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* * *
63089497 TTCATCGGCATTATAGCCTGCTAGGCTCGAGTCCCAATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* * * *
63089540 TTCACCAGTATTATAGCCTGCTAGGCTCGAGGTCTGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* *
63089583 TTCACCGGTATTATAGCCTGTTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* *
63089626 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* *
63089669 TTCACCAGCATTATAGCCTGCTAGGCTCAAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
*
63089712 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGA
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGA
63089749 ATTCATCATA
Statistics
Matches: 265, Mismatches: 28, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
41 12 0.05
42 26 0.10
43 227 0.86
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
Found at i:63094964 original size:42 final size:42
Alignment explanation
Indices: 63094846--63094967 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 42
63094836 AATCATACCA
* * ** *
63094846 ATGCCATATCCAAGATATGGTCTTACATGGGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* ** * * * *
63094888 ACGCCAATAGGCCAGCTGTGGCCTTTCACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
63094931 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
63094968 ACTAACCCTA
Statistics
Matches: 60, Mismatches: 19, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
42 30 0.50
43 30 0.50
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:63099804 original size:8 final size:8
Alignment explanation
Indices: 63099791--63099815 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63099781 AATAGGGACT
63099791 AAAATGTG
1 AAAATGTG
63099799 AAAATGTG
1 AAAATGTG
63099807 AAAATGTG
1 AAAATGTG
63099815 A
1 A
63099816 GGGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:63101454 original size:14 final size:14
Alignment explanation
Indices: 63101426--63101458 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
63101416 CCGTGTGAGG
*
63101426 CACAC-GGCCTGCT
1 CACACGGGCCTACT
63101439 CACACGGGCCTACT
1 CACACGGGCCTACT
63101453 CACACG
1 CACACG
63101459 AGCATGTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.21, C:0.45, G:0.21, T:0.12
Consensus pattern (14 bp):
CACACGGGCCTACT
Found at i:63103199 original size:71 final size:71
Alignment explanation
Indices: 63103113--63103276 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
63103103 CGATTTGTCT
63103113 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
63103178 CTTTCA
66 CTTTCA
*
63103184 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
63103249 CTTTCA
66 CTTTCA
63103255 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63103277 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:63103314 original size:71 final size:70
Alignment explanation
Indices: 63103113--63103310 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
63103103 CGATTTGTCT
* * *
63103113 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
63103178 CTTTCA
65 CTTTCA
* * * *
63103184 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
63103249 CTTTCA
65 CTTTCA
* *
63103255 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
63103311 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:63108424 original size:24 final size:24
Alignment explanation
Indices: 63108397--63108603 Score: 378
Period size: 24 Copynumber: 8.6 Consensus size: 24
63108387 CTTATTATGT
* * *
63108397 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
63108421 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63108445 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63108469 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63108493 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63108517 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63108541 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
63108565 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
63108589 TCGCACACATAGTGC
1 TCGCACACATAGTGC
63108604 ATTTGAGATA
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 179 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:63116306 original size:24 final size:24
Alignment explanation
Indices: 63116279--63116413 Score: 234
Period size: 24 Copynumber: 5.6 Consensus size: 24
63116269 CTTATTATGT
* * *
63116279 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
63116303 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63116327 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63116351 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
63116375 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
63116399 TCGCACACATAGTGC
1 TCGCACACATAGTGC
63116414 ATTTGAGATA
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 107 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:63118908 original size:43 final size:42
Alignment explanation
Indices: 63118844--63118965 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 42
63118834 AATCATACCA
*
63118844 ATGCCATATCCCAGATATGGTCTTACATAG-GATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-AGAAATCTCATATCG
*
63118886 ATGCCAATATCCCA-ACTGTGGTCTTACAAGAAATCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACAAGAAATCTCATATCG
63118929 ATGCCATATCCCAGATATGGTCTTACACA-AAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACA-AGAAATCTCA
63118966 ACTAACCCTA
Statistics
Matches: 72, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
42 35 0.49
43 37 0.51
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATCG
Found at i:63124991 original size:294 final size:291
Alignment explanation
Indices: 63124460--63125033 Score: 794
Period size: 294 Copynumber: 2.0 Consensus size: 291
63124450 TTGTGTTATA
*
63124460 TTAGTTCCACTAAAATAATCACACACAAAGTAGAAAAATTACCCAAAAAAATGTATTTCAAATGA
1 TTAGTTCCACTAAAATAATCACACACAAAGTAGAAAAATCACCCAAAAAAATGTATTTCAAATGA
* **
63124525 GAAAGTACCTTAACTTCAAGATTAGGTGGTTCTCTGATTAACAACTTGGGTTGTGTGTATTCTTG
66 GAAAGTACCTTAACTTCAAGATTAGGCGGTTCTCTGATTAACAACTTGGGTTGTGTGTATTCCCG
* * * * * *
63124590 AGCTTCAAACTCTAATAGTTCAAATCGTGCTACTTGAACATAGTCCCTCATATTGTCTTTCACCA
131 AGCTTCAAACTCAAATAGTTCAAATCATGCTACTTGAACATAATCCATCAAATTGGCTTTCACCA
* *
63124655 AAGCCATAATTTCCTTACCTTATTCATCTTCTAATGGCTCAGACCTTAAGGTGTTTTCCAATGGG
196 AAGCCATAATTTCCTTACCTTATTCATATTCTAATGGCTCAGACCATAAGGTGTTTTCCAATGGG
63124720 TCGTCTACAGAATTACACTCTTGGCATTCTG
261 TCGTCTACAGAATTACACTCTTGGCATTCTG
** * * * *
63124751 TTAGTTCTTCTAAAATAATCACA-AGCAAAGTAGAACAATCACCTAGATAAATGTATTTCAAATG
1 TTAGTTCCACTAAAATAATCACACA-CAAAGTAGAAAAATCACCCAAAAAAATGTATTTCAAATG
* * *
63124815 AGAGGGAAGTACCTTAAGTTCAAGATT-GGACGGTTC-CTCGATTGATAACTTGGGTTGTGTGTA
65 AGA---AAGTACCTTAACTTCAAGATTAGG-CGGTTCTCT-GATTAACAACTTGGGTTGTGTGTA
* * **
63124878 TTCCCGAGCTTCCAACTCAAATGGTTCAAATCATGCTGGTTGAACATAATCCATCAAATTGGCTT
125 TTCCCGAGCTTCAAACTCAAATAGTTCAAATCATGCTACTTGAACATAATCCATCAAATTGGCTT
* * * * *
63124943 TCATCAAAGTCATATTTTCCTTACCTTGTTCATATTCTAATTGCTCAGACCATAAGGTGTTTTCC
190 TCACCAAAGCCATAATTTCCTTACCTTATTCATATTCTAATGGCTCAGACCATAAGGTGTTTTCC
*
63125008 AATGGGTCTTCTACAGAATTACACTC
255 AATGGGTCGTCTACAGAATTACACTC
63125034 ACATTTCATA
Statistics
Matches: 246, Mismatches: 31, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
290 1 0.00
291 58 0.24
293 4 0.02
294 183 0.74
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (291 bp):
TTAGTTCCACTAAAATAATCACACACAAAGTAGAAAAATCACCCAAAAAAATGTATTTCAAATGA
GAAAGTACCTTAACTTCAAGATTAGGCGGTTCTCTGATTAACAACTTGGGTTGTGTGTATTCCCG
AGCTTCAAACTCAAATAGTTCAAATCATGCTACTTGAACATAATCCATCAAATTGGCTTTCACCA
AAGCCATAATTTCCTTACCTTATTCATATTCTAATGGCTCAGACCATAAGGTGTTTTCCAATGGG
TCGTCTACAGAATTACACTCTTGGCATTCTG
Found at i:63127356 original size:29 final size:31
Alignment explanation
Indices: 63127307--63127365 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
63127297 AATGTGTATC
* *
63127307 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
63127336 TATTTATTCTAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
63127366 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Done.