Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 206 of 438
Found at i:63785498 original size:47 final size:47
Alignment explanation
Indices: 63785377--63785498 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
63785367 CCTAGCCTCT
* *
63785377 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
63785424 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
63785471 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
63785499 CACTTCATCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:63785567 original size:9 final size:9
Alignment explanation
Indices: 63785553--63785609 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
63785543 ATCTCATGTG
63785553 CATATCATA
1 CATATCATA
*
63785562 CATATCATGTG
1 CATATCA--TA
63785573 CATATCATA
1 CATATCATA
* *
63785582 CATGTCATGTG
1 CATATCA--TA
63785593 CATATCATA
1 CATATCATA
63785602 CATATCAT
1 CATATCAT
63785610 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:63785571 original size:20 final size:20
Alignment explanation
Indices: 63785546--63785611 Score: 123
Period size: 20 Copynumber: 3.3 Consensus size: 20
63785536 TATGAATATC
63785546 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
63785566 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
63785586 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
63785606 TCATGT
1 TCATGT
63785612 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:63785576 original size:11 final size:11
Alignment explanation
Indices: 63785546--63785600 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63785536 TATGAATATC
63785546 TCATGTGCATA
1 TCATGTGCATA
*
63785557 TCA--TACATA
1 TCATGTGCATA
63785566 TCATGTGCATA
1 TCATGTGCATA
* *
63785577 TCA--TACATG
1 TCATGTGCATA
63785586 TCATGTGCATA
1 TCATGTGCATA
63785597 TCAT
1 TCAT
63785601 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:63785694 original size:25 final size:25
Alignment explanation
Indices: 63785648--63785695 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
63785638 ATATATAAAC
* * * *
63785648 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63785673 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63785696 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63786954 original size:27 final size:27
Alignment explanation
Indices: 63786933--63787379 Score: 457
Period size: 27 Copynumber: 16.7 Consensus size: 27
63786923 AAGGGTATTT
*
63786933 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
63786960 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
63786987 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
63787014 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
63787041 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
63787068 -CGATAATTATGTAAATCG-GGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* * *
63787094 TGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
*
63787121 TGGTAATT-TGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
63787147 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
63787174 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
63787201 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
63787228 CAGTAATTCTGTAAATC-ATGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
* * *
63787255 CAATAATTCTGTAAATCAAGGGTAAACA
1 TAGTAATTCTGTAAATCGAGGGTAAA-A
63787283 -A-TAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
63787308 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
63787335 CGGTAATTCTATAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
63787362 -AGGTAATTCTGTAAATCG
1 TA-GTAATTCTGTAAATCG
63787380 GGAGTACTTT
Statistics
Matches: 374, Mismatches: 28, Indels: 36
0.85 0.06 0.08
Matches are distributed among these distances:
25 2 0.01
26 65 0.17
27 302 0.81
28 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:63787255 original size:187 final size:187
Alignment explanation
Indices: 63786935--63787371 Score: 600
Period size: 187 Copynumber: 2.3 Consensus size: 187
63786925 GGGTATTTTA
* * *
63786935 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA-GTAATTCTAT
1 GTAA-TTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-AGGTAATTCTAC
* * *
63786999 AAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
64 AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGT
* * * * *
63787064 AAAACGATAATTATGTAAATC-GGGGTAAA-ATGGTAATTATGTAAA-TTAGGGGTAAAATG
129 AAAACAATAATTATGTAAATCAAGGGTAAACA--ATAATTATGTAAACTGA-GGGTAAAACG
* *
63787123 GTAATTTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
1 GTAATTTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAAGGTAATTCTACA
63787187 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATC-ATGGGT
65 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA-GGGT
* *
63787251 AAAACAATAATTCTGTAAATCAAGGGTAAACAATAATTCTGTAAACTGAGGGTAAAACG
129 AAAACAATAATTATGTAAATCAAGGGTAAACAATAATTATGTAAACTGAGGGTAAAACG
*
63787310 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAA-CTGAGGGTAAAAAGGTAATTCT
1 GTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAAAGGTAATTCT
63787372 GTAAATCGGG
Statistics
Matches: 222, Mismatches: 18, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
186 2 0.01
187 157 0.71
188 61 0.27
189 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (187 bp):
GTAATTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAAGGTAATTCTACAA
ATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
AACAATAATTATGTAAATCAAGGGTAAACAATAATTATGTAAACTGAGGGTAAAACG
Found at i:63787396 original size:54 final size:53
Alignment explanation
Indices: 63786935--63787379 Score: 547
Period size: 54 Copynumber: 8.3 Consensus size: 53
63786925 GGGTATTTTA
* * * **
63786935 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACG
* *
63786989 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACG
* * *
63787043 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACG
* * *
63787096 GTAATTATGTAAAT-TAGGGGTAAAATGGTAATT-TGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAA-TGAGGGTAAAACG
* **
63787149 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACG
* * * *
63787203 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCATGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATGA-GGGTAAAACG
* * **
63787257 ATAATTCTGTAAATCAAGGGT-AAACAATAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGTAAAACG
* *
63787310 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGGTAAAAAG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGTAAAACG
63787364 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
63787380 GGAGTACTTT
Statistics
Matches: 341, Mismatches: 41, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
52 8 0.02
53 121 0.35
54 212 0.62
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (53 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATGAGGGTAAAACG
Found at i:63787396 original size:134 final size:134
Alignment explanation
Indices: 63786935--63787378 Score: 587
Period size: 134 Copynumber: 3.3 Consensus size: 134
63786925 GGGTATTTTA
* * * *
63786935 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAGGGGTAAAATAGTAATTCTGTA
63787000 AATCGAGGGTAAA-ATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
66 AATCGAGGGTAAACA--GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
63787064 AAAACG
129 AAAACG
* * * ** * * *
63787070 ATAATTATGTAAATCG-GGGTAAAATGGTAATTATGTAAATTAGGGGTAAAATGGTAATT-TGTA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAGGGGTAAAATAGTAATTCTGTA
* * **
63787133 AA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGT
66 AATC-GAGGGT-AAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
63787197 AAAACG
129 AAAACG
* * *
63787203 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCATGGGTAAAACAATAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAGGGGTAAAATAGTAATTCTGTA
* *
63787268 AATCAAGGGTAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
66 AATCGAGGGTAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
63787332 AAACG
130 AAACG
63787337 GTAATTCTATAAA-CTGAGGGTAAAA-AGGTAATTCTGTAAATC
1 GTAATTCTATAAATC-GAGGGTAAAACA-GTAATTCTGTAAATC
63787379 GGGAGTACTT
Statistics
Matches: 270, Mismatches: 30, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
132 1 0.00
133 78 0.29
134 165 0.61
135 25 0.09
136 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (134 bp):
GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAGGGGTAAAATAGTAATTCTGTA
AATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
AACG
Found at i:63797641 original size:3 final size:3
Alignment explanation
Indices: 63797633--63797663 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
63797623 CGGGAAGCTA
*
63797633 TGG TGG TGG TGG TGG TGG TGG TGG TAG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG T
63797664 AGGTCTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.03, C:0.00, G:0.61, T:0.35
Consensus pattern (3 bp):
TGG
Found at i:63798593 original size:258 final size:258
Alignment explanation
Indices: 63798136--63798655 Score: 1022
Period size: 258 Copynumber: 2.0 Consensus size: 258
63798126 CCGAGGATCG
63798136 TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
1 TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
63798201 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
66 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
63798266 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATGAGCATGGATGAT
131 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATGAGCATGGATGAT
63798331 TAGCTCGCTTCGGCTGTCATAAATAATTGTTGCTTTGGGTTCCTTGTTAAATCAACTATTCGT
196 TAGCTCGCTTCGGCTGTCATAAATAATTGTTGCTTTGGGTTCCTTGTTAAATCAACTATTCGT
63798394 TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
1 TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
*
63798459 AAATATATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
66 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
63798524 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATGAGCATGGATGAT
131 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATGAGCATGGATGAT
*
63798589 TAGCTCGCTTCGGTTGTCATAAATAATTGTTGCTTTGGGTTCCTTGTTAAATCAACTATTCGT
196 TAGCTCGCTTCGGCTGTCATAAATAATTGTTGCTTTGGGTTCCTTGTTAAATCAACTATTCGT
63798652 TACC
1 TACC
63798656 CTAGTAGGAT
Statistics
Matches: 260, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
258 260 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (258 bp):
TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATGAGCATGGATGAT
TAGCTCGCTTCGGCTGTCATAAATAATTGTTGCTTTGGGTTCCTTGTTAAATCAACTATTCGT
Found at i:63802496 original size:22 final size:22
Alignment explanation
Indices: 63802468--63802512 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
63802458 AGTATGAATG
63802468 TGTAAAAATTTTGTTAAGAAAT
1 TGTAAAAATTTTGTTAAGAAAT
63802490 TGTAAAAATTTTGTTAAGAAAT
1 TGTAAAAATTTTGTTAAGAAAT
63802512 T
1 T
63802513 TAATCGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (22 bp):
TGTAAAAATTTTGTTAAGAAAT
Found at i:63802513 original size:13 final size:13
Alignment explanation
Indices: 63802473--63802513 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
63802463 GAATGTGTAA
63802473 AAATTTTGTTAAG
1 AAATTTTGTTAAG
63802486 AAA--TTG-TAA-
1 AAATTTTGTTAAG
63802495 AAATTTTGTTAAG
1 AAATTTTGTTAAG
63802508 AAATTT
1 AAATTT
63802514 AATCGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
9 3 0.12
10 3 0.12
11 6 0.25
12 3 0.12
13 9 0.38
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (13 bp):
AAATTTTGTTAAG
Found at i:63812781 original size:28 final size:28
Alignment explanation
Indices: 63812509--63812781 Score: 226
Period size: 28 Copynumber: 9.8 Consensus size: 28
63812499 TTCGTAGATC
* * * *
63812509 GCCATAAAGGCTTCCCTATCTATAGATT
1 GCCACAAAGGCTTCCCTTTTTATAGTTT
* * * *
63812537 GCAACAAAGTCTTTCCTTCTTATAGATTT
1 GCCACAAAGGCTTCCCTTTTTATAG-TTT
* * * *
63812566 -CCAGAAATGCTTCCTTTTTTTATAATTT
1 GCCACAAAGGCTTCC-CTTTTTATAGTTT
* * *
63812594 TCCACAAAGGCTTCCCTTTTCATAG-TC
1 GCCACAAAGGCTTCCCTTTTTATAGTTT
* * *
63812621 GCCAAAAAGGCTTTCCTTTTTATAGTTC
1 GCCACAAAGGCTTCCCTTTTTATAGTTT
* * * * * *
63812649 ACCACTAAGGCTTCACTTTTCAAAGATT
1 GCCACAAAGGCTTCCCTTTTTATAGTTT
* *
63812677 GCCACAAAGACTTCCCTTTTTATAGTTC
1 GCCACAAAGGCTTCCCTTTTTATAGTTT
* *
63812705 GCCATAAAGGCTTCCCTTTTCATAGTTT
1 GCCACAAAGGCTTCCCTTTTTATAGTTT
***
63812733 GTTGCAAAGGCTTCCCTTTTTATAGTTT
1 GCCACAAAGGCTTCCCTTTTTATAGTTT
*
63812761 GCAACAAAGGCTTCCCTTTTT
1 GCCACAAAGGCTTCCCTTTTT
63812782 TTAATGTCTT
Statistics
Matches: 186, Mismatches: 55, Indels: 8
0.75 0.22 0.03
Matches are distributed among these distances:
27 22 0.12
28 143 0.77
29 21 0.11
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (28 bp):
GCCACAAAGGCTTCCCTTTTTATAGTTT
Found at i:63825334 original size:213 final size:213
Alignment explanation
Indices: 63824963--63825378 Score: 769
Period size: 213 Copynumber: 2.0 Consensus size: 213
63824953 TTATCAATCT
*
63824963 TGTATTCAATTTCACATCAATAGCATGTACACAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
* *
63825028 AAATAAACACAATTTAGTTACACGAACTTACCTCAATACTTGTTCTTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAATTACACGAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
63825093 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
63825158 TTAATCATGAATTTATCA
196 TTAATCATGAATTTATCA
*
63825176 TGTATTCAATTTCACATCAATAGCATTTAAACAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
63825241 AAATAAACACAATTTAATTACACGAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAATTACACGAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
* * *
63825306 CAGAAACTTTTTGTTTTCCTCGATCCAATTTCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
63825371 TTAATCAT
196 TTAATCAT
63825379 CAATATATTA
Statistics
Matches: 196, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
213 196 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.38
Consensus pattern (213 bp):
TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
AAATAAACACAATTTAATTACACGAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
TTAATCATGAATTTATCA
Found at i:63828115 original size:40 final size:40
Alignment explanation
Indices: 63828059--63828226 Score: 161
Period size: 40 Copynumber: 4.2 Consensus size: 40
63828049 CAATTGAATG
*
63828059 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
*
63828100 -TATCCAGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * *
63828139 AAATCCGGGCTAATACCCGAAGGCATTTGTGCA-AGACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
*
63828179 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCA-GTGACTT
63828219 ATATCCGG
1 ATATCCGG
63828227 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 13, Indels: 21
0.75 0.09 0.15
Matches are distributed among these distances:
37 1 0.01
39 8 0.08
40 90 0.87
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:63828194 original size:80 final size:80
Alignment explanation
Indices: 63828061--63828226 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 80
63828051 ATTGAATGAT
* *
63828061 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCAGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCAGGCTAAGACCCGAAGGCATT
*
63828126 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
* * *
63828141 ATCCGGGCTAATACCCGAAGGCATTTGTGC-A-AGACGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGAC-TT-TATCCAGGCTAAGACCCGAAGGCA
* *
63828204 TTCGTGCATGTGGTTAT
64 TTCGTGCAAGTGGTTAA
63828221 ATCCGG
1 ATCCGG
63828227 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.04
79 3 0.04
80 70 0.92
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCAGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:63836138 original size:40 final size:40
Alignment explanation
Indices: 63836082--63836249 Score: 152
Period size: 40 Copynumber: 4.2 Consensus size: 40
63836072 CAATTGAATG
* *
63836082 ATATCCGGGTTAAGACCCGAAAGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
63836123 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * * *
63836162 AAATCTGGGCTAATACCCGAAGGCATTTGTGCA-AGACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
*
63836202 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCA-GTGACTT
63836242 ATATCCGG
1 ATATCCGG
63836250 TTGTATTCCG
Statistics
Matches: 103, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
37 1 0.01
39 8 0.08
40 89 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:63838895 original size:213 final size:213
Alignment explanation
Indices: 63838524--63838939 Score: 724
Period size: 213 Copynumber: 2.0 Consensus size: 213
63838514 TTATCGATCT
** *
63838524 TGTATTCAATTTCACATCAATAGCATGTACGCAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAATTTAAGCATAT
*
63838589 AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCTTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
63838654 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCCATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCCATATAAATGAAT
63838719 TTAATCATGAATTTATCA
196 TTAATCATGAATTTATCA
* *
63838737 TGTATTCAATTTCACATCAATAGCATTTAAACGACTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAATTTAAGCATAT
* **
63838802 AAATAAACACGATTTAGTTACATGAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
* * *
63838867 CAGAAACTTTTTGTTTTCCTCGATCCAATTCTGTATTTGGTCTTTTCGGATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCCATATAAATGAAT
63838932 TTAATCAT
196 TTAATCAT
63838940 CAATATATTA
Statistics
Matches: 191, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
213 191 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (213 bp):
TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAATTTAAGCATAT
AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCCATATAAATGAAT
TTAATCATGAATTTATCA
Found at i:63842119 original size:25 final size:25
Alignment explanation
Indices: 63842091--63842138 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63842081 TTATACCATG
* * *
63842091 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63842116 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63842139 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63842207 original size:20 final size:20
Alignment explanation
Indices: 63842182--63842240 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
63842172 TAAATATGGT
*
63842182 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
63842202 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
63842222 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
63842241 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:63842347 original size:24 final size:24
Alignment explanation
Indices: 63842290--63842457 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
63842280 GGAGGAAGTG
63842290 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
63842314 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63842337 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63842361 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63842385 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
** *
63842409 TGAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
63842433 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
63842458 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 8, Indels: 5
0.91 0.05 0.03
Matches are distributed among these distances:
23 22 0.17
24 100 0.75
25 11 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:63842687 original size:31 final size:31
Alignment explanation
Indices: 63842649--63842712 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63842639 CGGTTACAGT
63842649 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* ** *
63842680 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
63842711 AA
1 AA
63842713 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:63851969 original size:40 final size:40
Alignment explanation
Indices: 63851893--63852077 Score: 164
Period size: 40 Copynumber: 4.6 Consensus size: 40
63851883 TACACATTCA
* *
63851893 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACG
* *
63851933 AATGCCTTCGGGACTTAAG-CCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTT-AGCCCGGATTTAGTAACTCGCACG
* * *
63851973 AAAGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * ** * *
63852013 TATGCCGTC-GGATCTTATTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACG
*
63852053 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
63852078 ATCATTCGAA
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 5 0.04
40 102 0.86
41 12 0.10
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Found at i:63856035 original size:52 final size:50
Alignment explanation
Indices: 63855974--63856075 Score: 132
Period size: 52 Copynumber: 2.0 Consensus size: 50
63855964 GCCTGATAAT
* * *
63855974 TAAACACCGACTCACAGCCTGCTAGATAAATCACTGGCTCAAAGTCTACTAA
1 TAAACACCGACTCAAAGCCTGCTA-ATAAA-CACTGACTCAAAGCCTACTAA
* * *
63856026 TAAATACCGACTCAAAGCCTGCTAATATACACTGACTTAAAGCCTACTAA
1 TAAACACCGACTCAAAGCCTGCTAATAAACACTGACTCAAAGCCTACTAA
63856076 GCAATCACAT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
50 18 0.41
51 4 0.09
52 22 0.50
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (50 bp):
TAAACACCGACTCAAAGCCTGCTAATAAACACTGACTCAAAGCCTACTAA
Found at i:63856041 original size:25 final size:25
Alignment explanation
Indices: 63855974--63856075 Score: 96
Period size: 25 Copynumber: 4.0 Consensus size: 25
63855964 GCCTGATAAT
* *
63855974 TAAACACCGACTCACAGCCTGCTAGA
1 TAAACACCGACTCAAAGCCTACTA-A
* * *
63856000 TAAATCACTGGCTCAAAGTCTACTAA
1 TAAA-CACCGACTCAAAGCCTACTAA
* *
63856026 TAAATACCGACTCAAAGCCTGCTAA
1 TAAACACCGACTCAAAGCCTACTAA
* * *
63856051 TATACACTGACTTAAAGCCTACTAA
1 TAAACACCGACTCAAAGCCTACTAA
63856076 GCAATCACAT
Statistics
Matches: 60, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
25 36 0.60
26 9 0.15
27 15 0.25
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (25 bp):
TAAACACCGACTCAAAGCCTACTAA
Found at i:63862145 original size:28 final size:28
Alignment explanation
Indices: 63861921--63862304 Score: 319
Period size: 28 Copynumber: 13.6 Consensus size: 28
63861911 AGACCGCTAT
** * *
63861921 AAAGGCTTCTATTTT-AGTAGATCACCAT
1 AAAGGCTTCCCTTTTCA-TAGATCGCCAC
* * *
63861949 AAAGGCTTCTCTTTTCATAGATTGCCAT
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * *
63861977 AAAGGCTTCCCTTTTTATAGTTCACCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * * *
63862005 AAAGGTTTCCCTTTTCATAGATAGTCTC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
*
63862033 AAAGGCTTCCCTTTTCATAGATCGACAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * * *
63862061 AAAGGCTTCCCTCTT-ATAGTTCACCAT
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * *
63862088 AAAGGCTTCTCTTTTCATATATCACCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
63862116 AAAGGCTTCCCTTTTCATAGATCGCTACAAAC
1 AAAGGCTTCCCTTTTCATAGATCGC--C--AC
* * * *
63862148 AAAGGATTTCTTTTTCATA-ATTTGCCAC
1 AAAGGCTTCCCTTTTCATAGA-TCGCCAC
* *
63862176 AAAGGCTT-CCTTTGTCAGAAATCGCCAC
1 AAAGGCTTCCCTTT-TCATAGATCGCCAC
* ** *
63862204 AAAGGCTTCTCTTTTTTTAGTTCGCCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* *
63862232 AAAGGCTTCTCTTTTCGTAGATCGCCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * * *
63862260 AAAGGCTT-CATTTTTATAGTTTGCCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
*
63862287 AAAAGCTTCCCTTTTCAT
1 AAAGGCTTCCCTTTTCAT
63862305 GCTTCTCTTT
Statistics
Matches: 286, Mismatches: 59, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
27 45 0.16
28 211 0.74
29 6 0.02
30 2 0.01
31 1 0.00
32 21 0.07
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (28 bp):
AAAGGCTTCCCTTTTCATAGATCGCCAC
Found at i:63862345 original size:28 final size:28
Alignment explanation
Indices: 63862305--63862368 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
63862295 CCCTTTTCAT
* * *
63862305 GCTTCTCTTTTTATAGTTTGCCACAAAG
1 GCTTCCCTCTTTATAGTTCGCCACAAAG
63862333 GCTTCCCTCTTTATAGTTCGCCACAAAG
1 GCTTCCCTCTTTATAGTTCGCCACAAAG
63862361 GCTTCCCT
1 GCTTCCCT
63862369 TTTTCTAACG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.38
Consensus pattern (28 bp):
GCTTCCCTCTTTATAGTTCGCCACAAAG
Found at i:63867589 original size:10 final size:10
Alignment explanation
Indices: 63867562--63867604 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
63867552 TTTTTGCCTT
*
63867562 TTTCAAAAAA
1 TTTCAAAATA
* *
63867572 CTTAAAAATA
1 TTTCAAAATA
63867582 TTTCAAAATA
1 TTTCAAAATA
63867592 TTTCAAAATA
1 TTTCAAAATA
63867602 TTT
1 TTT
63867605 TTCATTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (10 bp):
TTTCAAAATA
Found at i:63867841 original size:15 final size:17
Alignment explanation
Indices: 63867810--63867845 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
63867800 ACTTTTCAAC
63867810 TTTTCAAATTAAATTAA
1 TTTTCAAATTAAATTAA
63867827 TTTT-AAATT-AATTAA
1 TTTTCAAATTAAATTAA
63867842 TTTT
1 TTTT
63867846 GATATTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.53
16 5 0.26
17 4 0.21
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTCAAATTAAATTAA
Found at i:63871216 original size:15 final size:14
Alignment explanation
Indices: 63871178--63871230 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
63871168 TGTTTTTCGT
*
63871178 AAAATGATTTCTGA
1 AAAATGATTTCTGG
*
63871192 AAAATAATTTCTTGG
1 AAAATGATTTC-TGG
*
63871207 AAAATGATTTCTAG
1 AAAATGATTTCTGG
63871221 AAAATGATTT
1 AAAATGATTT
63871231 ACTTTTCTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:63880306 original size:13 final size:13
Alignment explanation
Indices: 63880288--63880313 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63880278 AATATTGCAT
63880288 GAAAATTTTTATC
1 GAAAATTTTTATC
63880301 GAAAATTTTTATC
1 GAAAATTTTTATC
63880314 AATTATGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
GAAAATTTTTATC
Found at i:63880788 original size:20 final size:21
Alignment explanation
Indices: 63880763--63880804 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
63880753 AATATGCTGT
*
63880763 AAAATGAAAG-TTTTTGATAG
1 AAAATGAAAGATTATTGATAG
63880783 AAAATGAAAGATTATTGATAG
1 AAAATGAAAGATTATTGATAG
63880804 A
1 A
63880805 TAAACCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAATGAAAGATTATTGATAG
Found at i:63881537 original size:32 final size:32
Alignment explanation
Indices: 63881495--63881602 Score: 119
Period size: 32 Copynumber: 3.3 Consensus size: 32
63881485 AAATGATACA
*
63881495 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
* *
63881527 ACTTGGAAAGGTTAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
** *
63881559 -CATATGAAAAGGAAAGGTATACTTTGTGAGTACC
1 AC-T-TGAAAAGGTTAGGTATACTTTGTGTGTA-C
*
63881593 ACTTGGAAAG
1 ACTTGAAAAG
63881603 AATGTACGCC
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
31 1 0.02
32 30 0.48
33 29 0.46
34 2 0.03
35 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.31
Consensus pattern (32 bp):
ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
Found at i:63887014 original size:32 final size:32
Alignment explanation
Indices: 63886972--63887139 Score: 169
Period size: 32 Copynumber: 5.2 Consensus size: 32
63886962 AAGTGATACA
63886972 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
* * *
63887004 ACTTGGAAAGGTTAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
**
63887036 -CATATGAAAAGGAAAGGTACACTTTGTGTGTAC
1 AC-T-TGAAAAGGTTAGGTACACTTTGTGTGTAC
* * *
63887069 ACTTGGAAAGGTTAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
* ** *
63887101 -CATATGAAAATGAAAGGTACACTTTGTGAGTACC
1 AC-T-TGAAAAGGTTAGGTACACTTTGTGTGTA-C
63887135 ACTTG
1 ACTTG
63887140 GAATGGAATG
Statistics
Matches: 109, Mismatches: 20, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
31 2 0.02
32 55 0.50
33 48 0.44
34 3 0.03
35 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (32 bp):
ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
Found at i:63887024 original size:65 final size:65
Alignment explanation
Indices: 63886939--63887142 Score: 245
Period size: 65 Copynumber: 3.1 Consensus size: 65
63886929 AAAGGGCAAA
**
63886939 ACTTGGAAAGGACTTA--TATACCTAAGTG-ATACAACT-TGAAAAGGTTAGGTACACTTTGTGT
1 ACTTGGAAAGG--TTAGGTATA-CTAAGTGTATACAA-TATGAAAAGGAAAGGTACACTTTGTGT
63887000 GTAC
62 GTAC
** *
63887004 ACTTGGAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTTTGTGTGTAC
1 ACTTGGAAAGGTTAGGTATACTAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTAC
** * * *
63887069 ACTTGGAAAGGTTAGGTATACTTTGTGTATACCATATGAAAATGAAAGGTACACTTTGTGAGTAC
1 ACTTGGAAAGGTTAGGTATACTAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTA-
63887134 C
65 C
63887135 ACTTGGAA
1 ACTTGGAA
63887143 TGGAATGTAC
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
63 3 0.02
64 6 0.05
65 109 0.86
66 9 0.07
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.31
Consensus pattern (65 bp):
ACTTGGAAAGGTTAGGTATACTAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTAC
Found at i:63889927 original size:21 final size:21
Alignment explanation
Indices: 63889891--63889943 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
63889881 TACATTTATG
*
63889891 GGCATTAAAATAAGCCTACGA
1 GGCATTAAAACAAGCCTACGA
* * *
63889912 GGTATTAAAACGAGCCTATGA
1 GGCATTAAAACAAGCCTACGA
*
63889933 GGCCTTAAAAC
1 GGCATTAAAAC
63889944 TAGTTTAGGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (21 bp):
GGCATTAAAACAAGCCTACGA
Found at i:63890893 original size:38 final size:38
Alignment explanation
Indices: 63890790--63890893 Score: 106
Period size: 38 Copynumber: 2.7 Consensus size: 38
63890780 ACACCAATAC
*
63890790 GAAGCCTGCTAGGCATCAAGCCCGATAAACACCTACAAT
1 GAAGCCTGCTAGGCATCAAG-TCGATAAACACCTACAAT
* * **
63890829 -AAGCCTACTAGGCATCAAGATCGATAAACATC-GGAAT
1 GAAGCCTGCTAGGCATCAAG-TCGATAAACACCTACAAT
63890866 GAAGCCTGCTAGGC-TCAAAGTCTGATAA
1 GAAGCCTGCTAGGCATC-AAGTC-GATAA
63890894 GTCTCCGGCA
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
37 7 0.13
38 48 0.87
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (38 bp):
GAAGCCTGCTAGGCATCAAGTCGATAAACACCTACAAT
Found at i:63890918 original size:39 final size:39
Alignment explanation
Indices: 63890867--63890976 Score: 166
Period size: 39 Copynumber: 2.8 Consensus size: 39
63890857 CATCGGAATG
* * *
63890867 AAGCCTGCTAGGCTCAAAGTCTGATAAGTCTCCGGCACA
1 AAGCCTGTTAGGCTCAAAGCCTGATAAGTCACCGGCACA
* * *
63890906 AAGCTTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACG
1 AAGCCTGTTAGGCTCAAAGCCTGATAAGTCACCGGCACA
63890945 AAGCCTGTTAGGCTCAAAGCCTGATAAGTCAC
1 AAGCCTGTTAGGCTCAAAGCCTGATAAGTCAC
63890977 TGAACAAGGC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (39 bp):
AAGCCTGTTAGGCTCAAAGCCTGATAAGTCACCGGCACA
Found at i:63896904 original size:58 final size:58
Alignment explanation
Indices: 63896752--63896906 Score: 156
Period size: 57 Copynumber: 2.7 Consensus size: 58
63896742 CCACATATCA
* * * * *
63896752 TATAACAGGATTACTTGTCCAAGCTAAATCCTGTTTC--CAACATATGCTCATAAGAGCT
1 TATATCAGGATTACTAGTCCAGGCTAAAT-CT-TTTCTATAACATATGCTCAAAAGAGCT
* ** * * *
63896810 TA-ATCAGGACTACCCGTCCGGGCTAAATCCTGTCTATAACATATGCTCAAAAG-GTCT
1 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAACATATGCTCAAAAGAG-CT
63896867 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAA
1 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAA
63896907 TGAGGTCAAT
Statistics
Matches: 77, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
55 3 0.04
56 2 0.03
57 39 0.51
58 33 0.43
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (58 bp):
TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAACATATGCTCAAAAGAGCT
Found at i:63907000 original size:18 final size:19
Alignment explanation
Indices: 63906977--63907013 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63906967 AATTTAGCTT
63906977 TTAAACTC-TAAATGAAAA
1 TTAAACTCTTAAATGAAAA
*
63906995 TTAAACTCTTAAATTAAAA
1 TTAAACTCTTAAATGAAAA
63907014 ATTTTTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (19 bp):
TTAAACTCTTAAATGAAAA
Found at i:63907898 original size:28 final size:28
Alignment explanation
Indices: 63907866--63907920 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
63907856 TTATTTTGAC
*
63907866 TTTTTAAAATTTAGTTAAATATTTTAAAA
1 TTTTCAAAATTT-GTTAAATATTTTAAAA
* * *
63907895 TTTTCTAAATTTTTTTAATATTTTAA
1 TTTTCAAAATTTGTTAAATATTTTAA
63907921 TATATTATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 12 0.55
29 10 0.45
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (28 bp):
TTTTCAAAATTTGTTAAATATTTTAAAA
Found at i:63907912 original size:20 final size:18
Alignment explanation
Indices: 63907866--63907909 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
63907856 TTATTTTGAC
63907866 TTTTTAAAATTTAGTTAAAT
1 TTTTTAAAATTT--TTAAAT
*
63907886 ATTTTAAAATTTTCTAAAT
1 TTTTTAAAATTTT-TAAAT
63907905 TTTTT
1 TTTTT
63907910 TAATATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 9 0.43
20 11 0.52
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTTTAAAATTTTTAAAT
Found at i:63908871 original size:4 final size:4
Alignment explanation
Indices: 63908862--63908886 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
63908852 GAAGCATGGT
63908862 CCAC CCAC CCAC CCAC CCAC CCAC C
1 CCAC CCAC CCAC CCAC CCAC CCAC C
63908887 TTAAAAGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.76, G:0.00, T:0.00
Consensus pattern (4 bp):
CCAC
Found at i:63915010 original size:13 final size:13
Alignment explanation
Indices: 63914994--63915020 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63914984 TATGTATTAG
63914994 TTTATTTTATTTA
1 TTTATTTTATTTA
63915007 TTTATTTTATTTA
1 TTTATTTTATTTA
63915020 T
1 T
63915021 AACAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:63917190 original size:21 final size:22
Alignment explanation
Indices: 63917158--63917199 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
63917148 TATGACAGGG
63917158 TGCCTCCTTTCACAGGGGCGTA
1 TGCCTCCTTTCACAGGGGCGTA
* *
63917180 TGCCT-CTTTCATATGGGCGT
1 TGCCTCCTTTCACAGGGGCGT
63917200 GTTGACCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.12, C:0.29, G:0.26, T:0.33
Consensus pattern (22 bp):
TGCCTCCTTTCACAGGGGCGTA
Found at i:63923793 original size:17 final size:16
Alignment explanation
Indices: 63923771--63923804 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
63923761 ATTTGGTTCA
63923771 TTTTCTTCTTCTTCTCT
1 TTTTCTTCTTCTT-TCT
63923788 TTTTCTTCTTCTTTCT
1 TTTTCTTCTTCTTTCT
63923804 T
1 T
63923805 GGTTGTTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTCTTCTTCTTTCT
Found at i:63927703 original size:14 final size:14
Alignment explanation
Indices: 63927684--63927712 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
63927674 GAGATAATGG
63927684 ACATGATTTAGTAA
1 ACATGATTTAGTAA
63927698 ACATGATTTAGTAA
1 ACATGATTTAGTAA
63927712 A
1 A
63927713 GTATGCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (14 bp):
ACATGATTTAGTAA
Found at i:63928230 original size:10 final size:10
Alignment explanation
Indices: 63928215--63928241 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
63928205 ATTAGATAAA
63928215 ATGTTATTAT
1 ATGTTATTAT
63928225 ATGTTATTAT
1 ATGTTATTAT
63928235 ATGTTAT
1 ATGTTAT
63928242 AATTTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
ATGTTATTAT
Found at i:63928746 original size:43 final size:43
Alignment explanation
Indices: 63928696--63928781 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
63928686 TTTGTGATTC
** **
63928696 CGATATGTGTTTACGAGTAAGACCTTGTCTGGGACAG-TGGCAT
1 CGATATGTGGCTACGAGTAAGACCACGTCTGGGAC-GTTGGCAT
*
63928739 CGATATGTGGCTACGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGGCTACGAGTAAGACCACGTCTGGGACGTTGGCAT
63928782 TATACGATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (43 bp):
CGATATGTGGCTACGAGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:63932437 original size:40 final size:39
Alignment explanation
Indices: 63932373--63932540 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 39
63932363 TTCTTGGAAT
* **
63932373 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
63932412 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
63932452 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * * *
63932492 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
63932532 TTAGCCCGG
1 TTAGCCCGG
63932541 GTATCATTCA
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:63932521 original size:80 final size:80
Alignment explanation
Indices: 63932373--63932540 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
63932363 TTCTTGGAAT
* * **
63932373 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTTGCAC
*
63932437 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGAC
** * *
63932452 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCA-TTAGC
1 TTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTT-GC
*
63932515 ATAAATGCCTTCGGGAC
64 ACAAATGCCTTCGGGAC
63932532 TTAGCCCGG
1 TTAGCCCGG
63932541 GTATCATTCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 6 0.08
80 68 0.89
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTTGCAC
AAATGCCTTCGGGAC
Found at i:63940500 original size:40 final size:39
Alignment explanation
Indices: 63940452--63940659 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
63940442 TTCTTCGAAT
* *
63940452 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
63940491 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
63940531 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
63940571 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* * *
63940611 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
63940651 TTAGCCCGG
1 TTAGCCCGG
63940660 GTATCATTCA
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 140 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:63960341 original size:23 final size:23
Alignment explanation
Indices: 63960294--63960385 Score: 60
Period size: 23 Copynumber: 3.7 Consensus size: 23
63960284 AATGAAAAGG
* **
63960294 GCACTATGTGTGCGAATGGGGAA
1 GCACTATGTGTGCGAATAGAAAA
*
63960317 GCACTATGTGTGCGTATAGAAAA
1 GCACTATGTGTGCGAATAGAAAA
*
63960340 GCTAGTACTATGTGTGCAAAT-GAATATA
1 GC----ACTATGTGTGCGAATAGAA-A-A
*
63960368 TGCACTATGTGTACGAAT
1 -GCACTATGTGTGCGAAT
63960386 TTATTAACCG
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
23 21 0.39
25 13 0.24
26 3 0.06
27 14 0.26
28 1 0.02
29 2 0.04
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (23 bp):
GCACTATGTGTGCGAATAGAAAA
Found at i:63964831 original size:64 final size:64
Alignment explanation
Indices: 63964750--63964931 Score: 217
Period size: 64 Copynumber: 2.8 Consensus size: 64
63964740 AGACATTATG
* * *
63964750 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
63964814 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
63964879 A
64 A
* * *
63964880 ATG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
63964932 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
61 1 0.01
62 19 0.19
63 1 0.01
64 43 0.43
65 2 0.02
66 33 0.33
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63966016 original size:2 final size:2
Alignment explanation
Indices: 63966009--63966044 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
63965999 GTATCATGAC
63966009 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63966045 GACTAGTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63969114 original size:68 final size:67
Alignment explanation
Indices: 63969042--63969191 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
63969032 CATCATGTGT
* * * *
63969042 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
63969104 ATGTAG
62 ATGTAG
** * *
63969110 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
63969175 AG
66 AG
63969177 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
63969192 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:63969147 original size:64 final size:64
Alignment explanation
Indices: 63969066--63969249 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
63969056 AGACATTATG
* *
63969066 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63969130 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63969195 AA
63 AA
* * * *
63969197 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63969250 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63979305 original size:40 final size:39
Alignment explanation
Indices: 63979147--63979307 Score: 254
Period size: 38 Copynumber: 4.2 Consensus size: 39
63979137 TGTGTATGAA
*
63979147 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
63979186 TGTGCGA-TTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
63979223 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
63979262 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
63979302 TGTGCG
1 TGTGCG
63979308 GGTTACCATA
Statistics
Matches: 113, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
37 7 0.06
38 58 0.51
39 31 0.27
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:63979323 original size:40 final size:40
Alignment explanation
Indices: 63979164--63979343 Score: 154
Period size: 38 Copynumber: 4.6 Consensus size: 40
63979154 ATTGTGATAT
* *** *
63979164 CCGGGCTAAG-CCCGAAGGCAATTGTGCGA-TTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * ** *
63979202 CCGGGCTAAG-CCCGAAGGCA-ATGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
63979240 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
63979279 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
63979319 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63979344 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
37 7 0.06
38 47 0.38
39 24 0.20
40 45 0.37
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:63986957 original size:39 final size:39
Alignment explanation
Indices: 63986903--63987062 Score: 245
Period size: 38 Copynumber: 4.2 Consensus size: 39
63986893 TGTGTATGAA
*
63986903 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
63986942 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
63986980 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGG--AT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
63987017 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
63987057 TGTGCG
1 TGTGCG
63987063 GGTTACCATA
Statistics
Matches: 110, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
36 1 0.01
37 24 0.22
38 41 0.37
39 37 0.34
40 7 0.06
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:63987062 original size:77 final size:76
Alignment explanation
Indices: 63986901--63987054 Score: 249
Period size: 77 Copynumber: 2.0 Consensus size: 76
63986891 GATGTGTATG
*
63986901 AATGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
1 AATGTGCGAGA-TATGATATCCGGGCTAAGCCCGAAGG-AATTGTGCGAGTTGTGATATCCGGGC
63986965 TAAGCCCGAAGGC
64 TAAGCCCGAAGGC
*
63986978 AATGTGCGAGATATGATATCCGGGCTAAGCCCGAAGG-ATTGTGCGAGTTGTGATATCCGGGTTA
1 AATGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGAATTGTGCGAGTTGTGATATCCGGGCTA
63987042 AGTCCCGAAGGC
66 AG-CCCGAAGGC
63987054 A
1 A
63987055 TTTGTGCGGG
Statistics
Matches: 73, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
75 28 0.38
76 10 0.14
77 34 0.47
78 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.23
Consensus pattern (76 bp):
AATGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGAATTGTGCGAGTTGTGATATCCGGGCTA
AGCCCGAAGGC
Found at i:63987078 original size:40 final size:38
Alignment explanation
Indices: 63986903--63987093 Score: 231
Period size: 38 Copynumber: 4.9 Consensus size: 38
63986893 TGTGTATGAA
* *
63986903 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC-AT
* *
63986942 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAA
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAT
*
63986980 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGG-AT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAT
* *
63987017 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCA-T
* ** * *
63987057 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
63987094 GTTTGAACGA
Statistics
Matches: 134, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
37 25 0.19
38 42 0.31
39 36 0.27
40 31 0.23
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (38 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAT
Found at i:63987078 original size:77 final size:76
Alignment explanation
Indices: 63986920--63987092 Score: 231
Period size: 77 Copynumber: 2.2 Consensus size: 76
63986910 ATTGTGATAT
63986920 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGTGC
1 CCGGGCTAAGCCCGAAGG-AATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGTGC
** *
63986985 GAGATATGATAT
65 GAGATACCATAA
* *
63986997 CCGGGCTAAGCCCGAAGG-ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 CCGGGCTAAGCCCGAAGGAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA-ATGTG
* *
63987061 CGGGTTACCATAA
64 CGAGATACCATAA
*
63987074 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAG-CCCGAAGG
63987093 CGTTTGAACG
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
75 28 0.33
76 10 0.12
77 39 0.46
78 8 0.09
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.22
Consensus pattern (76 bp):
CCGGGCTAAGCCCGAAGGAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGTGCG
AGATACCATAA
Found at i:64000182 original size:49 final size:49
Alignment explanation
Indices: 64000123--64000360 Score: 253
Period size: 49 Copynumber: 4.8 Consensus size: 49
64000113 GGCTATCTAG
* *
64000123 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATGCAG-
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTAT-CAGA
* * * ** *
64000172 TACATGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCAGA
* * * * *
64000222 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCAGA
* * * *
64000273 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGA
* * *
64000322 CACACGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
64000361 TCATAATAGA
Statistics
Matches: 155, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
49 75 0.48
50 43 0.28
51 37 0.24
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGA
Found at i:64000347 original size:100 final size:101
Alignment explanation
Indices: 64000178--64000358 Score: 292
Period size: 100 Copynumber: 1.8 Consensus size: 101
64000168 GCAGTACATG
* * * *
64000178 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGACACACGTAGTAGCCTACACTT
64000243 AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
* **
64000279 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGACACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGACACACGTAGTAGCCTACACTT
64000343 AGTACTACACACGTGA
66 AGTACTACACACGTGA
64000359 CCTCATAATA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
100 43 0.59
101 30 0.41
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGACACACGTAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
Found at i:64001652 original size:245 final size:245
Alignment explanation
Indices: 64001222--64001712 Score: 955
Period size: 245 Copynumber: 2.0 Consensus size: 245
64001212 ACTGTCACCT
*
64001222 TAAAAATCGTAACTTGAGTTCTACAACTCGAAAATCAGATTCAAAATTTTTCCCCGAAACTAGAC
1 TAAAAATCGTAACTTGAGTTCCACAACTCGAAAATCAGATTCAAAATTTTTCCCCGAAACTAGAC
64001287 TCATATGTCCATCTACATATATTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAG
66 TCATATGTCCATCTACATATATTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAG
64001352 TTAAAGTCTCCACTGTTACAGGGTACGACTACACTGATCTTCATGCATTACGACCTGGATATCTC
131 TTAAAGTCTCCACTGTTACAGGGTACGACTACACTGATCTTCATGCATTACGACCTGGATATCTC
64001417 CCTGTACAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGAC
196 CCTGTACAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGAC
64001467 TAAAAATCGTAACTTGAGTTCCACAACTCGAAAATCAGATTCAAAATTTTTCCCCGAAACTAGAC
1 TAAAAATCGTAACTTGAGTTCCACAACTCGAAAATCAGATTCAAAATTTTTCCCCGAAACTAGAC
*
64001532 TCATATGTCCATCTACATATATTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAG
66 TCATATGTCCATCTACATATATTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAG
*
64001597 TTAAAGTCTCCACTGTTACAGGGTACGACTACACTGATCTTCATGTATTACGACCTGGATATCTC
131 TTAAAGTCTCCACTGTTACAGGGTACGACTACACTGATCTTCATGCATTACGACCTGGATATCTC
64001662 CCTGTACAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGAC
196 CCTGTACAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGAC
64001712 T
1 T
64001713 CAAAGAGGAA
Statistics
Matches: 243, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
245 243 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (245 bp):
TAAAAATCGTAACTTGAGTTCCACAACTCGAAAATCAGATTCAAAATTTTTCCCCGAAACTAGAC
TCATATGTCCATCTACATATATTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAG
TTAAAGTCTCCACTGTTACAGGGTACGACTACACTGATCTTCATGCATTACGACCTGGATATCTC
CCTGTACAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGAC
Found at i:64002765 original size:37 final size:37
Alignment explanation
Indices: 64002713--64002840 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
64002703 TTATTACGAA
*
64002713 GTCTTACCCGAACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
64002750 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
64002787 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
64002824 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
64002841 TTTCCAAGTT
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
37 83 0.94
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:64002938 original size:48 final size:48
Alignment explanation
Indices: 64002880--64003031 Score: 232
Period size: 48 Copynumber: 3.2 Consensus size: 48
64002870 TATTACAACA
64002880 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * ** * *
64002928 TTTACATTAGCCATTCGGCTTTACCACATACACATATCTTATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
64002976 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
64003024 TTCACATT
1 TTCACATT
64003032 CATCACATCG
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 90 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:64003067 original size:96 final size:97
Alignment explanation
Indices: 64002865--64003178 Score: 274
Period size: 96 Copynumber: 3.3 Consensus size: 97
64002855 GTACATTTAG
* * *
64002865 TCACATAT-TACA-ACATTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TCACATATATATATACATTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
* * * **
64002928 TTTACATT-AGC-CATTCGG-CTTTA--CCACA
66 TTCACATTCATCACA-TCGGCCATTAGGCCTTA
* **
64002956 TACACATATCTTATATATGTTTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATA
1 T-CACATAT-ATATATA-CATTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATA
64003021 TATTTCACATTCATCACATCGGCCATTAGGCCTTA
63 TATTTCACATTCATCACATCGGCCATTAGGCCTTA
* * * * * * *
64003056 TCACATATATATATACATTCACATTCATCACATCGGCCATTAGGC-CTTAT-CACAT---ATATA
1 TCACATATATATATACATTCACATT-AGCCCTTCGG-CTTTA-CCACATATACACATCACACATA
*
64003116 CACTTTCACATTCATCACATCGGCCATTAGGCCTTA
63 TA-TTTCACATTCATCACATCGGCCATTAGGCCTTA
*
64003152 TCACATATATACATACACTTTCACATT
1 TCACATATATATATACA--TTCACATT
64003179 CATCACATCG
Statistics
Matches: 185, Mismatches: 22, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
91 1 0.01
92 7 0.04
94 3 0.02
95 6 0.03
96 102 0.55
97 14 0.08
98 32 0.17
99 15 0.08
100 5 0.03
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (97 bp):
TCACATATATATATACATTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
TTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:64003077 original size:49 final size:49
Alignment explanation
Indices: 64003024--64003216 Score: 327
Period size: 47 Copynumber: 3.9 Consensus size: 49
64003014 ACACATATAT
64003024 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACA
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACA
* *
64003073 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACA
*
64003120 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACA
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACA
64003169 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 --TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
64003217 CTTATACATG
Statistics
Matches: 134, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
47 45 0.34
49 44 0.33
51 45 0.34
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACA
Found at i:64003189 original size:51 final size:50
Alignment explanation
Indices: 64003023--64003213 Score: 329
Period size: 51 Copynumber: 3.9 Consensus size: 50
64003013 CACACATATA
64003023 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACA-
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ATACAC
64003073 -TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT-ATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACAC
64003119 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ATACAC
64003170 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
64003214 TATCTTATAC
Statistics
Matches: 135, Mismatches: 0, Indels: 11
0.92 0.00 0.08
Matches are distributed among these distances:
45 5 0.04
47 40 0.30
49 40 0.30
51 50 0.37
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.32
Consensus pattern (50 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAATACAC
Found at i:64003211 original size:96 final size:95
Alignment explanation
Indices: 64003023--64003213 Score: 337
Period size: 96 Copynumber: 2.0 Consensus size: 95
64003013 CACACATATA
*
64003023 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACATTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACATTCACATTCATCACA
64003088 TCGGCCATTAGGCCTTATCACATATATACAC
66 TCGGCCATTAGGCCTTATCACA-ATATACAC
64003119 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACA--TTCACATTCATCA
64003184 CATCGGCCATTAGGCCTTATCACATATATA
64 CATCGGCCATTAGGCCTTATCACA-ATATA
64003214 TATCTTATAC
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
96 49 0.53
98 43 0.47
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.32
Consensus pattern (95 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACATTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAATATACAC
Found at i:64003232 original size:51 final size:48
Alignment explanation
Indices: 64003018--64003219 Score: 325
Period size: 49 Copynumber: 4.1 Consensus size: 48
64003008 CACATCACAC
*
64003018 ATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATATCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
64003066 ATATACATTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATAT-CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
64003115 ACA-CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATATCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
64003162 ACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 --ATA-TCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
64003213 ATATCTT
1 ATATCTT
64003220 ATACATGTTT
Statistics
Matches: 143, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
47 43 0.30
48 7 0.05
49 49 0.34
51 44 0.31
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
ATATCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
Found at i:64006298 original size:40 final size:39
Alignment explanation
Indices: 64006232--64006382 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
64006222 AAATTGAATG
* * *
64006232 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
64006271 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
64006311 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
64006351 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64006383 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:64006396 original size:40 final size:39
Alignment explanation
Indices: 64006269--64006398 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
64006259 ATGCTGGAAA
* *
64006269 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
64006309 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
64006349 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
64006389 TTATATCCGG
1 TTATATCCGG
64006399 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:64013958 original size:51 final size:49
Alignment explanation
Indices: 64013783--64014014 Score: 302
Period size: 49 Copynumber: 4.7 Consensus size: 49
64013773 CTAGTACGCA
* *
64013783 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
* ** *
64013832 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * *
64013882 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACG
* * * *
64013933 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
*
64013982 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
64014015 TTACAATAGA
Statistics
Matches: 156, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 70 0.45
50 48 0.31
51 38 0.24
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:64016087 original size:16 final size:16
Alignment explanation
Indices: 64016066--64016104 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
64016056 TTTTAAAGTT
64016066 TAATTAAG-TAATATGA
1 TAATTAAGTTAA-ATGA
*
64016082 TAATTAAGTTAAATGT
1 TAATTAAGTTAAATGA
64016098 TAATTAA
1 TAATTAA
64016105 ACAAAAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (16 bp):
TAATTAAGTTAAATGA
Found at i:64016912 original size:40 final size:40
Alignment explanation
Indices: 64016868--64017025 Score: 235
Period size: 40 Copynumber: 4.0 Consensus size: 40
64016858 ATTGTATGAC
*
64016868 TGCACATATGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
1 TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
*
64016908 TGCACATACATGCCCTTGTTTGTACTTCGGTACCCCTGAT
1 TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
* * *
64016948 TGCAGATGCGTGCCCTTGTTTGTACTTCGATACCCCTGAT
1 TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
* * * *
64016988 TGTACATATGTGCCCCTGTTTGTACTTTGGTACCCCTG
1 TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTG
64017026 CCTGTTTGTA
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37
Consensus pattern (40 bp):
TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
Found at i:64016992 original size:20 final size:20
Alignment explanation
Indices: 64016887--64017097 Score: 104
Period size: 20 Copynumber: 10.3 Consensus size: 20
64016877 GTGCCCTTGT
64016887 TTGTACTTCGGTACCCCTGA
1 TTGTACTTCGGTACCCCTGA
* * * * * *
64016907 TTGCACATAC-ATGCCCTTGT
1 TTGTAC-TTCGGTACCCCTGA
64016927 TTGTACTTCGGTACCCCTGA
1 TTGTACTTCGGTACCCCTGA
* ** * * *
64016947 TTGCAGAT-GCGTGCCCTTGT
1 TTGTACTTCG-GTACCCCTGA
*
64016967 TTGTACTTCGATACCCCTGA
1 TTGTACTTCGGTACCCCTGA
* ** * *
64016987 TTGTACATATGTGCCCCTGT
1 TTGTACTTCGGTACCCCTGA
* *
64017007 TTGTACTTTGGTACCCCTGCCTGT
1 TTGTACTTCGGTA--CC--CCTGA
64017031 TTGTACTTCGGTACCCCTGA
1 TTGTACTTCGGTACCCCTGA
* * * *
64017051 TTGCACATAC-GTGCCCCTGT
1 TTGTAC-TTCGGTACCCCTGA
* *
64017071 TTGTATTTTGGTACCCCTGA
1 TTGTACTTCGGTACCCCTGA
64017091 TTGTACT
1 TTGTACT
64017098 CACATGCCCC
Statistics
Matches: 133, Mismatches: 48, Indels: 20
0.66 0.24 0.10
Matches are distributed among these distances:
19 4 0.03
20 103 0.77
21 5 0.04
22 4 0.03
24 17 0.13
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37
Consensus pattern (20 bp):
TTGTACTTCGGTACCCCTGA
Found at i:64017032 original size:24 final size:24
Alignment explanation
Indices: 64017002--64017049 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
64016992 CATATGTGCC
*
64017002 CCTGTTTGTACTTTGGTACCCCTG
1 CCTGTTTGTACTTCGGTACCCCTG
64017026 CCTGTTTGTACTTCGGTACCCCTG
1 CCTGTTTGTACTTCGGTACCCCTG
64017050 ATTGCACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.08, C:0.31, G:0.21, T:0.40
Consensus pattern (24 bp):
CCTGTTTGTACTTCGGTACCCCTG
Found at i:64017039 original size:64 final size:64
Alignment explanation
Indices: 64016964--64017089 Score: 216
Period size: 64 Copynumber: 2.0 Consensus size: 64
64016954 TGCGTGCCCT
* *
64016964 TGTTTGTACTTCGATACCCCTGATTGTACATATGTGCCCCTGTTTGTACTTTGGTACCCCTGCC
1 TGTTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGCC
* *
64017028 TGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTATTTTGGTACCCCTG
1 TGTTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTG
64017090 ATTGTACTCA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.13, C:0.28, G:0.20, T:0.39
Consensus pattern (64 bp):
TGTTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGCC
Found at i:64017084 original size:40 final size:40
Alignment explanation
Indices: 64017026--64017117 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
64017016 GGTACCCCTG
*
64017026 CCTGTTTGTACTTCGGTACCCCTGATTGCACAT-ACGTGCC
1 CCTGTTTGTACTTCGGTACCCCTGATTGCAC-TCACATGCC
* * *
64017066 CCTGTTTGTATTTTGGTACCCCTGATTGTACTCACATGCC
1 CCTGTTTGTACTTCGGTACCCCTGATTGCACTCACATGCC
*
64017106 CCTGTTTATACT
1 CCTGTTTGTACT
64017118 CTGATAACTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.02
40 44 0.98
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.38
Consensus pattern (40 bp):
CCTGTTTGTACTTCGGTACCCCTGATTGCACTCACATGCC
Found at i:64017106 original size:104 final size:104
Alignment explanation
Indices: 64016924--64017117 Score: 291
Period size: 104 Copynumber: 1.9 Consensus size: 104
64016914 TACATGCCCT
* * *
64016924 TGTTTGTACTTCGGTACCCCTGATTGCAGATGCGTGCCCTTGTTTGTACTTCGATACCCCTGATT
1 TGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTGATT
** *
64016989 GTACATATGTGCCCCTGTTTGTACTTTGGTACCCCTGCC
66 GTACATACATGCCCCTGTTTATACTTTGGTACCCCTGCC
* * *
64017028 TGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTATTTTGGTACCCCTGATT
1 TGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTGATT
64017093 GTAC-TCACATGCCCCTGTTTATACT
66 GTACAT-ACATGCCCCTGTTTATACT
64017118 CTGATAACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
103 1 0.01
104 79 0.99
ACGTcount: A:0.14, C:0.28, G:0.20, T:0.38
Consensus pattern (104 bp):
TGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTGATT
GTACATACATGCCCCTGTTTATACTTTGGTACCCCTGCC
Found at i:64019582 original size:47 final size:47
Alignment explanation
Indices: 64019506--64019774 Score: 380
Period size: 47 Copynumber: 5.7 Consensus size: 47
64019496 GATTTTATGC
*
64019506 GATGAATGTGAATGTGTATATATATGTGATAAGGCCTAATGG-CGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
64019554 GATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGT
64019602 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
64019651 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * *
64019698 GATGAATGTGAAAGTGTATATATGTGAT-AGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
64019744 GATGGATGTGGAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
64019775 TCCCGAAGGG
Statistics
Matches: 206, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
46 41 0.20
47 85 0.41
48 34 0.17
49 43 0.21
50 3 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:64019609 original size:96 final size:95
Alignment explanation
Indices: 64019506--64019774 Score: 391
Period size: 96 Copynumber: 2.8 Consensus size: 95
64019496 GATTTTATGC
*
64019506 GATGAATGTGAATGTGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
64019570 TTATATATGTGATAAGGCCTAATGGCCGATGT
65 -TATATATGTGATAAGGCCGAATGGCCAATGT
*
64019602 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 GATGAATGTGAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
64019667 TATATATGTGATAAGGCCGAATGGCCAATGT
65 TATATATGTGATAAGGCCGAATGGCCAATGT
* * * * * *
64019698 GATGAATGTGAAAGTG-TATATATGTGAT-AGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGT
1 GATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
64019761 ATAAATGTGATAAG
66 ATATATGTGATAAG
64019775 TCCCGAAGGG
Statistics
Matches: 159, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
93 41 0.26
94 12 0.08
96 85 0.53
97 21 0.13
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (95 bp):
GATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:64021948 original size:40 final size:40
Alignment explanation
Indices: 64021884--64022168 Score: 416
Period size: 40 Copynumber: 7.2 Consensus size: 40
64021874 GAGAATTGAG
* * *
64021884 AGTGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
64021924 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
64021964 AGTGATGTAT--GGA-TAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
64022001 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
64022041 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
64022081 AGTAATGCAACCGGACTAAG-TCCTGAAGGGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCC-GAAGAGCATTCGTGCT
* * * * *
64022121 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
64022161 GGTGATGT
1 AGTGATGT
64022169 GTATTCGGGC
Statistics
Matches: 223, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
37 34 0.15
38 3 0.01
39 6 0.03
40 178 0.80
41 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:64025691 original size:49 final size:49
Alignment explanation
Indices: 64025638--64025908 Score: 376
Period size: 49 Copynumber: 5.7 Consensus size: 49
64025628 GATTTTATGC
*
64025638 GATGAATGTGAATGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
64025687 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGGTGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
64025736 AATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* * *
64025785 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* * * *
64025832 GATGAATGTGAAAGTG--TATATATGTGAT-AGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
64025878 GATGGATGTGGAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAG
64025909 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 14, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
46 37 0.18
47 56 0.28
48 8 0.04
49 102 0.50
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:64033748 original size:27 final size:26
Alignment explanation
Indices: 64033701--64033751 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
64033691 CGAGGCTGCC
*
64033701 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
64033727 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
64033752 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:64038166 original size:40 final size:40
Alignment explanation
Indices: 64038083--64038235 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
64038073 TCGAATGATG
* *
64038083 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
64038123 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
64038163 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
64038204 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
64038236 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:64041270 original size:17 final size:18
Alignment explanation
Indices: 64041238--64041271 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
64041228 CTCTCCTAAA
64041238 ATGATTTTGATCTTTCTC
1 ATGATTTTGATCTTTCTC
64041256 ATGATTTTG-TCTTTCT
1 ATGATTTTGATCTTTCT
64041272 GTATGCTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.59
Consensus pattern (18 bp):
ATGATTTTGATCTTTCTC
Found at i:64043375 original size:27 final size:26
Alignment explanation
Indices: 64043328--64043378 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
64043318 CGAGGCTGCC
*
64043328 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
64043354 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
64043379 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:64046124 original size:12 final size:13
Alignment explanation
Indices: 64046107--64046135 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
64046097 CTCATACATG
64046107 AATAAATAAA-GC
1 AATAAATAAATGC
64046119 AATAAATAAATGC
1 AATAAATAAATGC
64046132 AATA
1 AATA
64046136 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:64048239 original size:16 final size:16
Alignment explanation
Indices: 64048214--64048249 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
64048204 GAGAAACCAT
*
64048214 TTGGATTGATTAAGGG
1 TTGGACTGATTAAGGG
64048230 TTGGACTGATTAAGGG
1 TTGGACTGATTAAGGG
64048246 TTGG
1 TTGG
64048250 TAGTATTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.03, G:0.39, T:0.36
Consensus pattern (16 bp):
TTGGACTGATTAAGGG
Found at i:64054702 original size:40 final size:39
Alignment explanation
Indices: 64054657--64054786 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
64054647 CGGAATATAA
64054657 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
64054697 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
64054737 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
64054777 CCGGATATAA
1 CCGGATATAA
64054787 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64054801 original size:40 final size:40
Alignment explanation
Indices: 64054673--64054824 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
64054663 ATAACCATGT
* * *
64054673 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
64054713 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
64054753 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
64054793 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
64054825 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:64054807 original size:80 final size:80
Alignment explanation
Indices: 64054673--64054822 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
64054663 ATAACCATGT
*
64054673 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
64054737 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
64054753 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
64054816 CCCGGAT
64 CCCGGAT
64054823 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:64057000 original size:70 final size:70
Alignment explanation
Indices: 64056887--64057029 Score: 286
Period size: 70 Copynumber: 2.0 Consensus size: 70
64056877 ATTTTTTATT
64056887 ATTAACAAGGGTAAAATAGTAAATTAGTAAATAAACCTAAAATAAACTAAGTAAATGCTATTATC
1 ATTAACAAGGGTAAAATAGTAAATTAGTAAATAAACCTAAAATAAACTAAGTAAATGCTATTATC
64056952 TTCCC
66 TTCCC
64056957 ATTAACAAGGGTAAAATAGTAAATTAGTAAATAAACCTAAAATAAACTAAGTAAATGCTATTATC
1 ATTAACAAGGGTAAAATAGTAAATTAGTAAATAAACCTAAAATAAACTAAGTAAATGCTATTATC
64057022 TTCCC
66 TTCCC
64057027 ATT
1 ATT
64057030 TCTTTCTTGT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (70 bp):
ATTAACAAGGGTAAAATAGTAAATTAGTAAATAAACCTAAAATAAACTAAGTAAATGCTATTATC
TTCCC
Found at i:64058223 original size:40 final size:38
Alignment explanation
Indices: 64058130--64058223 Score: 109
Period size: 38 Copynumber: 2.4 Consensus size: 38
64058120 TAGTTAAAGT
* *
64058130 CTTTAATTATGTCATAATCTAAACATCATTAATATGAG
1 CTTTAATTATGTCATAATATAAACATCATTAATAAGAG
* *
64058168 CTTTAATTATGTCATAATATGAACAT-ATTTAATAAGGG
1 CTTTAATTATGTCATAATATAAACATCA-TTAATAAGAG
*
64058206 TTTTTTAATTATGTCATA
1 --CTTTAATTATGTCATA
64058224 GTTTAGGACA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
37 1 0.02
38 32 0.67
40 15 0.31
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (38 bp):
CTTTAATTATGTCATAATATAAACATCATTAATAAGAG
Found at i:64058265 original size:39 final size:38
Alignment explanation
Indices: 64058208--64058290 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 38
64058198 AATAAGGGTT
* *
64058208 TTTTAATTATGTCATAGTTTAGGACATCTTAAATATATG
1 TTTTAAATATGTCATAGTTTA-GACATCTTAAATACATG
* * *
64058247 TTTTAAATATGTCCTAGTTTAGACGTCTTTAATACATG
1 TTTTAAATATGTCATAGTTTAGACATCTTAAATACATG
64058285 TCTTTA
1 T-TTTA
64058291 GTTCAGACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
38 15 0.39
39 23 0.61
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (38 bp):
TTTTAAATATGTCATAGTTTAGACATCTTAAATACATG
Found at i:64059664 original size:30 final size:30
Alignment explanation
Indices: 64059630--64059689 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
64059620 TTTCTGAGCC
64059630 CAGGGGCAAAATCATAATTCTGCAAAGGTT
1 CAGGGGCAAAATCATAATTCTGCAAAGGTT
* ** * *
64059660 CAGGGTCAAAATTGTAATTTTTCAAAGGTT
1 CAGGGGCAAAATCATAATTCTGCAAAGGTT
64059690 TGAGTTAGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (30 bp):
CAGGGGCAAAATCATAATTCTGCAAAGGTT
Found at i:64060630 original size:55 final size:54
Alignment explanation
Indices: 64060501--64060697 Score: 254
Period size: 54 Copynumber: 3.6 Consensus size: 54
64060491 TTGGTAAGAT
* *
64060501 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
64060555 AAGGAAATCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * *
64060610 AAAGG-TCCCATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTC-ATAAGGG
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
64060663 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCA
64060698 ATGGTAAGTT
Statistics
Matches: 125, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.25
54 43 0.34
55 43 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:64062062 original size:12 final size:10
Alignment explanation
Indices: 64062047--64062124 Score: 52
Period size: 10 Copynumber: 7.5 Consensus size: 10
64062037 AAAAATTGAA
64062047 ATAAAAATATTT
1 ATAAAAATA--T
*
64062059 ATAATAATAT
1 ATAAAAATAT
64062069 ATAAAAATAT
1 ATAAAAATAT
64062079 AT-AAAATAT
1 ATAAAAATAT
* *
64062088 TTAGAATATAT
1 ATA-AAAATAT
64062099 ATAATAAA-AT
1 ATAA-AAATAT
* *
64062109 AGATATAATAT
1 ATA-AAAATAT
64062120 ATAAA
1 ATAAA
64062125 TAAATTGAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 8 0.16
10 20 0.39
11 15 0.29
12 8 0.16
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (10 bp):
ATAAAAATAT
Found at i:64062079 original size:18 final size:17
Alignment explanation
Indices: 64062062--64062124 Score: 58
Period size: 18 Copynumber: 3.7 Consensus size: 17
64062052 AATATTTATA
64062062 ATAATATATAAAAATAT
1 ATAATATATAAAAATAT
* * *
64062079 ATAAAATATTTAGAATAT
1 ATAATATA-TAAAAATAT
*
64062097 AT-ATA-ATAAAATAGAT
1 ATAATATATAAAA-ATAT
64062113 ATAATATATAAA
1 ATAATATATAAA
64062125 TAAATTGAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
15 3 0.09
16 6 0.17
17 12 0.34
18 14 0.40
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
ATAATATATAAAAATAT
Found at i:64062086 original size:9 final size:9
Alignment explanation
Indices: 64062058--64062124 Score: 52
Period size: 9 Copynumber: 7.7 Consensus size: 9
64062048 TAAAAATATT
64062058 TATAATAATA
1 TATAA-AATA
64062068 TATAAAAATA
1 TAT-AAAATA
64062078 TATAAAATA
1 TATAAAATA
* *
64062087 TTTAGAATA
1 TATAAAATA
64062096 TAT---ATA
1 TATAAAATA
64062102 -ATAAAATA
1 TATAAAATA
* *
64062110 GATATAATA
1 TATAAAATA
64062119 TATAAA
1 TATAAA
64062125 TAAATTGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
5 2 0.04
6 3 0.07
8 3 0.07
9 26 0.57
10 10 0.22
11 2 0.04
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (9 bp):
TATAAAATA
Found at i:64062098 original size:20 final size:20
Alignment explanation
Indices: 64062051--64062155 Score: 76
Period size: 20 Copynumber: 5.2 Consensus size: 20
64062041 ATTGAAATAA
*
64062051 AAATATTTATAATAATATAT
1 AAATATATATAATAATATAT
* *
64062071 AAAAATATATAA-AATATTT
1 AAATATATATAATAATATAT
*
64062090 AGAATATATATAATAAAATAGAT
1 A-AATATATATAAT--AATATAT
64062113 ATAATATATA-AATAA-AT-T
1 A-AATATATATAATAATATAT
* *
64062131 GAATATA-ATATTAAATATAT
1 AAATATATATAAT-AATATAT
64062151 AAATA
1 AAATA
64062156 AATTAAACCA
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
16 1 0.02
17 8 0.12
18 3 0.05
19 10 0.15
20 27 0.41
22 3 0.05
23 14 0.21
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
AAATATATATAATAATATAT
Found at i:64062101 original size:32 final size:33
Alignment explanation
Indices: 64062050--64062121 Score: 94
Period size: 31 Copynumber: 2.2 Consensus size: 33
64062040 AATTGAAATA
* *
64062050 AAAATATTTATAATAATAT-ATAAAA-ATATAT
1 AAAATATTTAGAATAATATAATAAAATAGATAT
64062081 AAAATATTTAGAATATATATAATAAAATAGATAT
1 AAAATATTTAGAATA-ATATAATAAAATAGATAT
*
64062115 AATATAT
1 AAAATAT
64062122 AAATAAATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
31 14 0.40
32 4 0.11
33 6 0.17
34 11 0.31
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (33 bp):
AAAATATTTAGAATAATATAATAAAATAGATAT
Found at i:64062102 original size:40 final size:39
Alignment explanation
Indices: 64062052--64062153 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 39
64062042 TTGAAATAAA
* *
64062052 AATATTTATAATAATATATAAAAATATATAAA-ATATTTAG
1 AATATATATAATAATATATAAAAATATATAAATA-AATT-G
* * *
64062092 AATATATATAATAAAATAGATATAATATATAAATAAATTG
1 AATATATATAATAATATATA-AAAATATATAAATAAATTG
*
64062132 AATATA-ATATTAAATATATAAA
1 AATATATATAAT-AATATATAAA
64062154 TAAATTAAAC
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
39 5 0.10
40 30 0.60
41 14 0.28
42 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (39 bp):
AATATATATAATAATATATAAAAATATATAAATAAATTG
Found at i:64062109 original size:23 final size:23
Alignment explanation
Indices: 64062075--64062128 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
64062065 ATATATAAAA
**
64062075 ATAT-ATAAAATATTTAGAATAT
1 ATATAATAAAATAGATAGAATAT
*
64062097 ATATAATAAAATAGATATAATAT
1 ATATAATAAAATAGATAGAATAT
64062120 ATA-AATAAA
1 ATATAATAAA
64062129 TTGAATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATAATAAAATAGATAGAATAT
Found at i:64062136 original size:22 final size:22
Alignment explanation
Indices: 64062092--64062147 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
64062082 AAATATTTAG
64062092 AATATATATAATAAAATAGATAT
1 AATATATA-AATAAAATAGATAT
*
64062115 AATATATAAAT-AAATTGAATAT
1 AATATATAAATAAAATAG-ATAT
64062137 AATAT-TAAATA
1 AATATATAAATA
64062148 TATAAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 10 0.33
22 12 0.40
23 8 0.27
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (22 bp):
AATATATAAATAAAATAGATAT
Found at i:64065924 original size:40 final size:39
Alignment explanation
Indices: 64065875--64066079 Score: 216
Period size: 40 Copynumber: 5.2 Consensus size: 39
64065865 TCTTCGGAAT
* *
64065875 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** * *
64065914 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
64065954 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
64065994 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* * *
64066034 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
64066074 TTAGCC
1 TTAGCC
64066080 TGGGTATCAT
Statistics
Matches: 141, Mismatches: 21, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 135 0.96
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:64071120 original size:55 final size:54
Alignment explanation
Indices: 64070991--64071187 Score: 227
Period size: 54 Copynumber: 3.6 Consensus size: 54
64070981 TTGGTAAGAT
* * * *
64070991 AAGGATATCATGTAAGACCATGCCAAGGCATGGGATTGATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
* * * *
64071045 AAGGAAATCATGTAAGACCATGTCAAGACATGGCTTTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-A
* * * * *
64071101 AAGG-TCCCATGTATGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
* *
64071153 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
64071188 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.26
54 40 0.33
55 40 0.33
56 5 0.04
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
Found at i:64072342 original size:21 final size:21
Alignment explanation
Indices: 64072316--64072358 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
64072306 GTGCAACAAG
*
64072316 GGAAACTTTAACTAATAAACT
1 GGAAACTTTAACGAATAAACT
64072337 GGAAACTTTAACGAATAAACT
1 GGAAACTTTAACGAATAAACT
64072358 G
1 G
64072359 TACTAATTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.26
Consensus pattern (21 bp):
GGAAACTTTAACGAATAAACT
Found at i:64075688 original size:48 final size:48
Alignment explanation
Indices: 64075525--64075743 Score: 168
Period size: 48 Copynumber: 4.6 Consensus size: 48
64075515 GGCATAATGT
* ** *
64075525 CGATGCCATGTCCCAGACATGGTCTT-CACTGACTATCAAAATTAAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCACTA-TACGTGC
** * * * * *
64075573 CGGCGCCATGTCCTAGACATGGTCTTACACT-AGCTCTCACATATTCATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-CAC-TATACGTGC
* * *
64075623 CGATGCCTTGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCACTATACGTGC
*
64075671 CGATGCCATGTCCCAGACATGGTTTTACACTGACA-CATCTCATA---GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCA-CT-ATACGTGC
*
64075717 CGATG-CATGTCCCAAACAT-GTCTTACA
1 CGATGCCATGTCCCAGACATGGTCTTACA
64075744 TTGGCTTACA
Statistics
Matches: 136, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
44 7 0.05
45 13 0.10
46 6 0.04
47 1 0.01
48 64 0.47
49 13 0.10
50 31 0.23
51 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACCACTATACGTGC
Found at i:64075845 original size:48 final size:47
Alignment explanation
Indices: 64075577--64075876 Score: 217
Period size: 46 Copynumber: 6.4 Consensus size: 47
64075567 TAAGGCCGGC
* * * * *
64075577 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATTCATACCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCT--CAT-CTCATGCTGAT
* * * * *
64075627 GCCTTGTCCCAGACATGGTCTTACACTGACACCTCTAT-ACGTG-TCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGC-TCTC-ATCTCATGCT-GAT
* * * *
64075675 GCCATGTCCCAGACATGGTTTTACACT-G-ACACATCTCATAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAT-GCTGAT
* * *
64075721 G-CATGTCCCAAACAT-GTCTTACATTGGCT-TACATCTCGAGGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTC-ATGCTGAT
* * *
64075767 G-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC-ATGCTGAT
* *
64075813 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CTCAT-GCTGAT
64075861 G-CATGTCCCAGACATG
1 GCCATGTCCCAGACATG
64075877 TCTGGCACTA
Statistics
Matches: 199, Mismatches: 36, Indels: 33
0.74 0.13 0.12
Matches are distributed among these distances:
44 10 0.05
45 18 0.09
46 54 0.27
47 32 0.16
48 53 0.27
49 2 0.01
50 28 0.14
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCATGCTGAT
Found at i:64075858 original size:94 final size:95
Alignment explanation
Indices: 64075525--64075876 Score: 298
Period size: 98 Copynumber: 3.7 Consensus size: 95
64075515 GGCATAATGT
* * * ** *
64075525 CGATGCCATGTCCCAGACATGGTCTT-CACTGACTATCAAAAT-TAAGGCCGGCGCCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGT--GGCTGATGCCATGTCCCA
* *
64075588 GACATGGTCTTACACTAGCTCTCACATATTCATAC
64 GACATGGTCTTACACTAGCTCT--CAT-CTCATGC
* * * *
64075623 CGATGCCTTGTCCCAGACATGGTCTTACACTGACACCTC-TATACGTGTC-GATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-TCTCATA-ATGTGGCTGATGCCATGTCCCA
* * *
64075686 GACATGGTTTTACACT-G-ACACATCTCATAGC
64 GACATGGTCTTACACTAGCTCTCATCTCAT-GC
* * * * *
64075717 CGATG-CATGTCCCAAACAT-GTCTTACATTGGCT-TACAT-CTCGAGGCTGATG-CATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CATAAT-GTGGCTGATGCCATGTCCCA
*
64075777 GACAT-GTCTTACACTAGCTCTCGTCTCAATGC
64 GACATGGTCTTACACTAGCTCTCATCTC-ATGC
* * *
64075809 TGACGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATG-CATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCTGATGCCATGTCCCAGA
64075873 CATG
66 CATG
64075877 TCTGGCACTA
Statistics
Matches: 204, Mismatches: 33, Indels: 37
0.74 0.12 0.14
Matches are distributed among these distances:
90 10 0.05
91 19 0.09
92 27 0.13
93 31 0.15
94 48 0.24
95 2 0.01
96 1 0.00
97 1 0.00
98 51 0.25
99 10 0.05
100 3 0.01
101 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCTGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCATCTCATGC
Found at i:64083506 original size:46 final size:46
Alignment explanation
Indices: 64083375--64083589 Score: 188
Period size: 46 Copynumber: 4.6 Consensus size: 46
64083365 AGGCTGACAC
* *
64083375 CATGTCCCAGACATGGTCTTACACTAGCTCTTACATATTTGTGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTC-T-CATATAT-AGCCGATG
* * * *
64083424 CAATGTCCTAGACATGGTCTTACACT-G-ACACATCTCATAGCCGATG
1 C-ATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-ATAGCCGATG
* * *
64083470 CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCA-ATGCTGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-ATA-GCCGATG
* * * *
64083516 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATATAGCCGATG
*
64083564 CATGTCCTAGACAT-GTCTTACACTAG
1 CATGTCCCAGACATGGTCTTACACTAG
64083590 TGCACAAATG
Statistics
Matches: 139, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 36 0.26
47 28 0.20
48 25 0.18
49 3 0.02
50 23 0.17
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCATATATAGCCGATG
Found at i:64083576 original size:94 final size:96
Alignment explanation
Indices: 64083315--64083589 Score: 283
Period size: 94 Copynumber: 2.9 Consensus size: 96
64083305 CATAGGGTCT
* * * * **
64083315 AATGTCGATGCCATGTCCTAGACATGGTCTTACACTGAATATCGA-AATTGAGGCTGACACCATG
1 AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCTC-ATAA-TGTGGCTGA-TGCATG
*
64083379 TCCCAGACATGGTCTTACACTAGCTCTTACATATT
63 TCCCAGACAT-GTCTTACACTAGCTCTTACATATC
** * * * * *
64083414 TGTGCCGATGCAATGTCCTAGACATGGTCTTACACTGACACATC-TCA--TAGCCGATGCATGTC
1 AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACTC-TCATAATGTGGCTGATGCATGTC
* *
64083476 CCAGACATGTCTTACACTAGCTC-T-CGTCTC
65 CCAGACATGTCTTACACTAGCTCTTACATATC
* * *
64083506 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCC
1 AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCTCATAATGTGGCTGATGCATGTCC
*
64083571 TAGACATGTCTTACACTAG
66 CAGACATGTCTTACACTAG
64083590 TGCACAAATG
Statistics
Matches: 144, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
91 2 0.01
92 39 0.27
93 1 0.01
94 47 0.33
95 14 0.10
96 4 0.03
99 35 0.24
100 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (96 bp):
AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCTCATAATGTGGCTGATGCATGTCC
CAGACATGTCTTACACTAGCTCTTACATATC
Found at i:64086511 original size:24 final size:24
Alignment explanation
Indices: 64086462--64086541 Score: 101
Period size: 24 Copynumber: 3.3 Consensus size: 24
64086452 CTGGAGGCCT
*
64086462 AGCCTCTTTTAATAACTT-GGGC-AA
1 AGCC-CTTTCAATAA-TTGGGGCAAA
64086486 AGCCCTTTCAATAATTGGGGCAAA
1 AGCCCTTTCAATAATTGGGGCAAA
* *
64086510 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTCAATAATTGGGGCAAA
64086534 AGCCCTTT
1 AGCCCTTT
64086542 TTCACTTCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
22 2 0.04
23 13 0.25
24 36 0.71
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTCAATAATTGGGGCAAA
Found at i:64086618 original size:20 final size:20
Alignment explanation
Indices: 64086593--64086631 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
64086583 TATGAATACA
64086593 TCATGTACATATCATACATT
1 TCATGTACATATCATACATT
*
64086613 TCATGTGCATATCATACAT
1 TCATGTACATATCATACAT
64086632 ACCATGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (20 bp):
TCATGTACATATCATACATT
Done.