Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 207 of 438
Found at i:64086637 original size:20 final size:20
Alignment explanation
Indices: 64086594--64086638 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
64086584 ATGAATACAT
**
64086594 CATGTACATATCATACATTT
1 CATGTACATATCATACATAC
*
64086614 CATGTGCATATCATACATAC
1 CATGTACATATCATACATAC
64086634 CATGT
1 CATGT
64086639 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (20 bp):
CATGTACATATCATACATAC
Found at i:64091493 original size:42 final size:42
Alignment explanation
Indices: 64091394--64091550 Score: 190
Period size: 42 Copynumber: 3.7 Consensus size: 42
64091384 GTACCAATGC
* ** *
64091394 CATATCCCAGATATGGTCTTACATGTA-TCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGTAGTCTAATATCGATGT
* * * *
64091435 CAATAGCTCAGCTATGGTCTTACACGAAGTCTAATATCGATGT
1 C-ATATCCCAGATATGGTCTTACACGTAGTCTAATATCGATGT
* * *
64091478 CATATGCCAGATATGGTCTTACACGTAGTCTTATATTGATGT
1 CATATCCCAGATATGGTCTTACACGTAGTCTAATATCGATGT
*
64091520 CATATCCCAGATATGGTCTCACACGTAGTCT
1 CATATCCCAGATATGGTCTTACACGTAGTCT
64091551 CGTCATGACA
Statistics
Matches: 97, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
41 1 0.01
42 84 0.87
43 12 0.12
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGTAGTCTAATATCGATGT
Found at i:64093042 original size:51 final size:51
Alignment explanation
Indices: 64092982--64093086 Score: 165
Period size: 51 Copynumber: 2.1 Consensus size: 51
64092972 ATGTGAAAGA
*
64092982 TCTGATCGATAACAACATAACATAGACACATGAAACAAATTGTGGATCCTT
1 TCTGATCGATAACAACACAACATAGACACATGAAACAAATTGTGGATCCTT
** **
64093033 TCTGATCGATAACGGCACAACATAGACACATGAAACCCATTGTGGATCCTT
1 TCTGATCGATAACAACACAACATAGACACATGAAACAAATTGTGGATCCTT
64093084 TCT
1 TCT
64093087 AACTCATCAG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (51 bp):
TCTGATCGATAACAACACAACATAGACACATGAAACAAATTGTGGATCCTT
Found at i:64096574 original size:79 final size:79
Alignment explanation
Indices: 64096385--64096615 Score: 247
Period size: 79 Copynumber: 2.9 Consensus size: 79
64096375 TCGAATGATG
* * * *
64096385 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGGACTAAGATCCAAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCGGGCTAAG-TCCGAAGGCAT
* * * *
64096448 CCGTGCAAGTTACTAAT
63 TCGTACGAGTTACTAAA
* *
64096465 TCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTCG
64096529 TACGAGTTACTAAA
66 TACGAGTTACTAAA
* *
64096543 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA--CCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAATTCCGGGCTAAGT-CCGAAGGCAT
* *
64096606 TTGAACGAGT
63 TCGTACGAGT
64096616 AGCTATATCC
Statistics
Matches: 130, Mismatches: 15, Indels: 12
0.83 0.10 0.08
Matches are distributed among these distances:
78 33 0.25
79 55 0.42
80 38 0.29
81 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTCG
TACGAGTTACTAAA
Found at i:64096575 original size:40 final size:39
Alignment explanation
Indices: 64096385--64096608 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 39
64096375 TCGAATGATG
* * *
64096385 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * ** * *
64096425 TCCGGACTAAGATCCAAAGGCATCCGTGCAAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64096465 TCCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64096504 TCCGGGCTAAGTCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64096543 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT-AAA
*
64096584 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
64096609 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 72 0.45
40 80 0.50
41 8 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64096630 original size:79 final size:77
Alignment explanation
Indices: 64096455--64096641 Score: 218
Period size: 79 Copynumber: 2.4 Consensus size: 77
64096445 CATCCGTGCA
* *
64096455 AGTTACTAATTCCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAATTCCGGGCTAAGTCCGA
1 AGTTACTAAATCCGGGTTAAGTCCGAAGGCATTGGTGCGAGTTACTAA-TCCGGGCTAAGTCCGA
*
64096520 AGGCATTGGTACG
65 AGGCATTGGAACG
* *
64096533 AGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA-CCGGGCTATGTCC
1 AGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTGGTGCGAGTTA--CTAATCCGGGCTAAGT-C
*
64096597 CGAAGGCATTTGAACG
62 CGAAGGCATTGGAACG
* *
64096613 AG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 AGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
64096642 TACGTGATTC
Statistics
Matches: 95, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 20 0.21
79 44 0.46
80 27 0.28
81 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
AGTTACTAAATCCGGGTTAAGTCCGAAGGCATTGGTGCGAGTTACTAATCCGGGCTAAGTCCGAA
GGCATTGGAACG
Found at i:64102474 original size:42 final size:42
Alignment explanation
Indices: 64102321--64102479 Score: 176
Period size: 42 Copynumber: 3.8 Consensus size: 42
64102311 CTGTACCAAA
* * *
64102321 GCCATATCCCATATATGGTCTTACATATA-TCTCGTATTGAT
1 GCCATATCCCAGATATGGTCTTACACATAGTCTCATATTGAT
* * **
64102362 GCCAATATCCCAGCTATGGTCTTACACAAAGTCTCATATCAAT
1 GCC-ATATCCCAGATATGGTCTTACACATAGTCTCATATTGAT
** *
64102405 GCCATATCCCAGATATGGTCTGGCACGTAGTCTCATATTGAT
1 GCCATATCCCAGATATGGTCTTACACATAGTCTCATATTGAT
* ** *
64102447 GTCATATCCTTGATATGGTCTTACACGTAGTCT
1 GCCATATCCCAGATATGGTCTTACACATAGTCT
64102480 TAGTAACCAT
Statistics
Matches: 97, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
41 3 0.03
42 82 0.85
43 12 0.12
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACACATAGTCTCATATTGAT
Found at i:64104869 original size:19 final size:19
Alignment explanation
Indices: 64104845--64104890 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
64104835 GAACACAAAA
64104845 AGTAAGCTTTTAAAAGCTT
1 AGTAAGCTTTTAAAAGCTT
64104864 AGTAAGCTTTTAAAAGCTT
1 AGTAAGCTTTTAAAAGCTT
64104883 AGTAAGCT
1 AGTAAGCT
64104891 CGTATGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (19 bp):
AGTAAGCTTTTAAAAGCTT
Found at i:64107150 original size:29 final size:29
Alignment explanation
Indices: 64107118--64107190 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
64107108 CTTCGAGCTC
* *
64107118 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64107147 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64107176 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
64107191 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:64108394 original size:21 final size:20
Alignment explanation
Indices: 64108352--64108405 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
64108342 AATGAACACT
*
64108352 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
*
64108370 TTTTTCTTCATATTCTCTTTT
1 TTTTTCTTCAT-TTCTCTTTG
*
64108391 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
64108406 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.27
19 1 0.03
20 6 0.20
21 15 0.50
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:64114633 original size:38 final size:39
Alignment explanation
Indices: 64114579--64114674 Score: 131
Period size: 38 Copynumber: 2.5 Consensus size: 39
64114569 AATTAGTTTA
* * *
64114579 AGTCTTTAATTATGTCATCATTTGAACATCATTAATATG
1 AGTCTTTAATTATGTCATAATCTGAACATCATTAATAAG
*
64114618 AG-CTTTAATTATGTCATAATCTGAACATCTTTAATAAG
1 AGTCTTTAATTATGTCATAATCTGAACATCATTAATAAG
* *
64114656 GGTTTTTAATTATGTCATA
1 AGTCTTTAATTATGTCATA
64114675 GTTTAGGACA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
38 33 0.66
39 17 0.34
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (39 bp):
AGTCTTTAATTATGTCATAATCTGAACATCATTAATAAG
Found at i:64114701 original size:40 final size:39
Alignment explanation
Indices: 64114583--64114693 Score: 109
Period size: 38 Copynumber: 2.8 Consensus size: 39
64114573 AGTTTAAGTC
* * * * *
64114583 TTTAATTATGTCATCATTTGAACATCATT-AATATGAG-C
1 TTTAATTATGTCATAATCTGAACATC-TTAAATAAGGGTT
*
64114621 TTTAATTATGTCATAATCTGAACATCTTTAATAAGGGTT
1 TTTAATTATGTCATAATCTGAACATCTTAAATAAGGGTT
* * *
64114660 TTTAATTATGTCATAGTTTAGGACATCTTAAATA
1 TTTAATTATGTCATAATCT-GAACATCTTAAATA
64114694 TTTGTTTTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
37 2 0.03
38 30 0.49
39 17 0.28
40 12 0.20
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (39 bp):
TTTAATTATGTCATAATCTGAACATCTTAAATAAGGGTT
Found at i:64119353 original size:15 final size:16
Alignment explanation
Indices: 64119325--64119354 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
64119315 ATTTCCGACG
64119325 TTTCAGCATTTTGCCT
1 TTTCAGCATTTTGCCT
64119341 TTTCAGC-TTTTGCC
1 TTTCAGCATTTTGCC
64119355 GAATCACAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.10, C:0.27, G:0.13, T:0.50
Consensus pattern (16 bp):
TTTCAGCATTTTGCCT
Found at i:64121434 original size:65 final size:65
Alignment explanation
Indices: 64121330--64121459 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
64121320 TCATTATTTC
64121330 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
1 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
64121395 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
1 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
64121460 TTCATACCCT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.31
Consensus pattern (65 bp):
ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
Found at i:64123037 original size:57 final size:58
Alignment explanation
Indices: 64122974--64123084 Score: 163
Period size: 58 Copynumber: 1.9 Consensus size: 58
64122964 AATGTCATAT
* *
64122974 ACCTGTATCTGGCCCATTAAGCCC-AATCATA-TTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACACTT-ATATGGCCCATTAGGCCCAAATC
* *
64123031 ACCTGTATATGGCCCATTAGGCCCAAATCACACTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACACTTATATGGCCCATTAGGCCCA
64123085 GTCACTTTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
57 22 0.46
58 24 0.50
59 2 0.04
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACACTTATATGGCCCATTAGGCCCAAATC
Found at i:64123040 original size:29 final size:28
Alignment explanation
Indices: 64122974--64123084 Score: 134
Period size: 29 Copynumber: 3.9 Consensus size: 28
64122964 AATGTCATAT
* *
64122974 ACCTGTATCTGGCCCATTAAGCCC-AATC
1 ACCT-TATATGGCCCATTAGGCCCAAATC
**
64123002 ATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTT-ATATGGCCCATTAGGCCCAAATC
64123031 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACCT-TATATGGCCCATTAGGCCCAAATC
*
64123060 ACACTTATATGGCCCGTTAGGCCCA
1 AC-CTTATATGGCCCATTAGGCCCA
64123085 GTCACTTTTA
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
27 1 0.01
28 18 0.25
29 50 0.69
30 3 0.04
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (28 bp):
ACCTTATATGGCCCATTAGGCCCAAATC
Found at i:64128303 original size:40 final size:40
Alignment explanation
Indices: 64128137--64128289 Score: 216
Period size: 40 Copynumber: 3.8 Consensus size: 40
64128127 TCGAATGGTG
* * * * *
64128137 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAA
* *
64128178 TCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* *
64128218 TCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
64128258 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
64128290 CTATTATAAC
Statistics
Matches: 101, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 76 0.75
41 25 0.25
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
Found at i:64128312 original size:40 final size:40
Alignment explanation
Indices: 64128137--64128330 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
64128127 TCGAATGGTG
* * * * *
64128137 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTTACCAAA
*
64128178 TCCGGGTCAAT-TCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGG-CTATGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* *
64128218 TCCGGGTTAAT-TCCCGAAGGCAATTGTGCGAGTTACCAAA
1 TCCGGGCT-ATGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* * * **
64128258 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACCA-AA
* * *
64128299 -CCGGGCTATGTCCCAAAGGCTTTTGAGCGAGT
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGT
64128331 CGCTATATCC
Statistics
Matches: 129, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 101 0.78
41 25 0.19
42 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACCAAA
Found at i:64128329 original size:80 final size:80
Alignment explanation
Indices: 64128137--64128330 Score: 221
Period size: 80 Copynumber: 2.4 Consensus size: 80
64128127 TCGAATGGTG
* * * *
64128137 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
1 TCCGGGCTATGTCCCGAAGGCTTTTGTGC-GAGTGACCAAATCCGGGTCAAGTCCCGAAGGCATT
*
64128202 TGTGCGAGTTACCAAA
65 TGTGCGAGCTACCAAA
* ** * *
64128218 TCCGGGTTAAT-TCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCT-ATGTCCCGAAGGCTTTTGTGCGAGTGACCAAATCCGGGTCAAGTCCCGAAGGCATT
**
64128282 TGTGCGAGCTATTATAA
65 TGTGCGAGCTACCA-AA
* *
64128299 -CCGGGCTATGTCCCAAAGGCTTTTGAGCGAGT
1 TCCGGGCTATGTCCCGAAGGCTTTTGTGCGAGT
64128331 CGCTATATCC
Statistics
Matches: 93, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
79 2 0.02
80 65 0.70
81 25 0.27
82 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTATGTCCCGAAGGCTTTTGTGCGAGTGACCAAATCCGGGTCAAGTCCCGAAGGCATTT
GTGCGAGCTACCAAA
Found at i:64130866 original size:29 final size:28
Alignment explanation
Indices: 64130809--64130894 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
64130799 TACCTGTATC
* *
64130809 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
64130837 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
64130866 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
64130894 T
1 T
64130895 TCATGCTAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:64131128 original size:16 final size:16
Alignment explanation
Indices: 64131104--64131139 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
64131094 GTAGCCAAAC
*
64131104 TTTCGGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
64131120 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
64131136 TTTC
1 TTTC
64131140 GACTTTTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.25, G:0.17, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:64131145 original size:16 final size:16
Alignment explanation
Indices: 64131104--64131146 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
64131094 GTAGCCAAAC
*
64131104 TTTCGGCTTTTCGACA
1 TTTCGACTTTTCGACA
*
64131120 TTTC-AGCTTTTCGGCA
1 TTTCGA-CTTTTCGACA
64131136 TTTCGACTTTT
1 TTTCGACTTTT
64131147 GCTGATACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.12, C:0.23, G:0.16, T:0.49
Consensus pattern (16 bp):
TTTCGACTTTTCGACA
Found at i:64140731 original size:40 final size:40
Alignment explanation
Indices: 64140539--64140724 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
64140529 TCGAATGATG
* * *
64140539 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64140579 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64140619 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64140659 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64140700 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64140725 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64140731 original size:80 final size:80
Alignment explanation
Indices: 64140539--64140757 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
64140529 TCGAATGATG
* * **
64140539 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
64140603 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
64140619 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
64140681 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
64140700 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
64140758 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:64148747 original size:40 final size:40
Alignment explanation
Indices: 64148555--64148740 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
64148545 TCGAATGATG
* * *
64148555 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64148595 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64148635 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64148675 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64148716 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64148741 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64148747 original size:80 final size:80
Alignment explanation
Indices: 64148555--64148773 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
64148545 TCGAATGATG
* * **
64148555 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
64148619 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
64148635 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
64148697 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
64148716 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
64148774 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:64151342 original size:17 final size:18
Alignment explanation
Indices: 64151316--64151349 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64151306 TTTATTTTTA
64151316 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
64151333 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
64151350 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:64151978 original size:17 final size:17
Alignment explanation
Indices: 64151942--64151979 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
64151932 CCTAAATTTT
* *
64151942 AATTATTTAATTTTTCA
1 AATTATTTAATTATTAA
64151959 AATTATTTAATTATTAA
1 AATTATTTAATTATTAA
64151976 AATT
1 AATT
64151980 TTATATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTATTTAATTATTAA
Found at i:64164616 original size:50 final size:50
Alignment explanation
Indices: 64164560--64164656 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
64164550 TGCATTTATT
*
64164560 ATTGACATGAAATATCTTAGAAATGCATATTTGATGATAACGTGTGATAG
1 ATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGATAG
64164610 ATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGA
1 ATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGA
64164657 AAAATGTCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (50 bp):
ATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGATAG
Found at i:64165548 original size:27 final size:27
Alignment explanation
Indices: 64165518--64165571 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
64165508 TGATTTGCCA
64165518 AATGAAGGCATGTAAAAATAAGTTTAT
1 AATGAAGGCATGTAAAAATAAGTTTAT
64165545 AATGAAGGCATGTAAAAATAAGTTTAT
1 AATGAAGGCATGTAAAAATAAGTTTAT
64165572 CTCTTTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.04, G:0.19, T:0.30
Consensus pattern (27 bp):
AATGAAGGCATGTAAAAATAAGTTTAT
Found at i:64170136 original size:23 final size:22
Alignment explanation
Indices: 64170110--64170170 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
64170100 TCATTAGTGT
*
64170110 TTACCGTTTCAGCTC-GTATGAGC
1 TTACCGTTT-AGCTCAATA-GAGC
* *
64170133 TTACTGTTTTGCTCAATAGAGC
1 TTACCGTTTAGCTCAATAGAGC
64170155 TTACCGTTTTAGCTCA
1 TTACCG-TTTAGCTCA
64170171 CTGTTTATCA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
22 13 0.42
23 18 0.58
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (22 bp):
TTACCGTTTAGCTCAATAGAGC
Found at i:64176327 original size:25 final size:25
Alignment explanation
Indices: 64176299--64176354 Score: 58
Period size: 27 Copynumber: 2.2 Consensus size: 25
64176289 ACATACATCA
* *
64176299 CATAGGGGCAAAATAGTCATCTTAC
1 CATAAGGGAAAAATAGTCATCTTAC
* *
64176324 CATATAAGGGAAAAATAGTCATTTTAT
1 C--ATAAGGGAAAAATAGTCATCTTAC
64176351 CATA
1 CATA
64176355 TATAGGGGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
25 4 0.16
27 21 0.84
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (25 bp):
CATAAGGGAAAAATAGTCATCTTAC
Found at i:64176338 original size:27 final size:28
Alignment explanation
Indices: 64176308--64176361 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
64176298 ACATAGGGGC
64176308 AAAATAGTCATCTTACCATATA-AGGGA
1 AAAATAGTCATCTTACCATATATAGGGA
* *
64176335 AAAATAGTCATTTTATCATATATAGGG
1 AAAATAGTCATCTTACCATATATAGGG
64176362 GGTCTAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (28 bp):
AAAATAGTCATCTTACCATATATAGGGA
Found at i:64179657 original size:42 final size:43
Alignment explanation
Indices: 64179523--64179658 Score: 145
Period size: 42 Copynumber: 3.2 Consensus size: 43
64179513 CTTACATGGG
* * **
64179523 ATCTCATATCGATGCCAATAGCCCAGCTATGGTCTTACAC-T-A
1 ATCTCATAACGATGCC-ATATCCCAAATATGGTCTTACACATAA
* * * * *
64179565 TTCTCATATCGATGCCATGTCCCAGACATGGTCTTACACA-AA
1 ATCTCATAACGATGCCATATCCCAAATATGGTCTTACACATAA
*
64179607 ATCTCATAACGATGTCATATCCCAAATATGGTCTTACACATAA
1 ATCTCATAACGATGCCATATCCCAAATATGGTCTTACACATAA
64179650 AT-TCATAAC
1 ATCTCATAAC
64179659 CCTAATGTCA
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
41 19 0.24
42 57 0.71
43 4 0.05
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.29
Consensus pattern (43 bp):
ATCTCATAACGATGCCATATCCCAAATATGGTCTTACACATAA
Found at i:64186984 original size:40 final size:40
Alignment explanation
Indices: 64186936--64187163 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
64186926 GCTACTTGCT
64186936 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
64186976 CAAGTGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
64187016 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
64187056 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* ** * *
64187096 CAAATGCCTTCGGG-CTTAGACC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
64187135 CAAATGACTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
64187164 CATCCGAATA
Statistics
Matches: 170, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 3 0.02
39 30 0.18
40 135 0.79
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:64197786 original size:6 final size:6
Alignment explanation
Indices: 64197767--64197876 Score: 73
Period size: 6 Copynumber: 17.8 Consensus size: 6
64197757 TATTAGAACT
* * *
64197767 AGAATC AAAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * *
64197816 AGTATC AGGTAA-C AAAATC AAAATC AGAATC AGTATC ATGTAA-C AGAATC
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
64197866 AAAATC AGAAT
1 AGAATC AGAAT
64197877 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
5 5 0.06
6 65 0.80
7 8 0.10
8 3 0.04
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:64197802 original size:31 final size:31
Alignment explanation
Indices: 64197767--64197876 Score: 166
Period size: 31 Copynumber: 3.5 Consensus size: 31
64197757 TATTAGAACT
* * *
64197767 AGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
64197798 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
64197829 AAAATCAAAATCAGAATCAGTATCATGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
64197860 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
64197877 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:64198314 original size:27 final size:27
Alignment explanation
Indices: 64198284--64198508 Score: 226
Period size: 27 Copynumber: 8.3 Consensus size: 27
64198274 AAGGTAAAAT
* *
64198284 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
64198311 GGTAATTCTACCTTA-TAGGAGTATTTT
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * * *
64198338 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
64198365 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
64198392 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
64198419 AGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTTTACCCTACAAGGG-TATTTC
**
64198446 AAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
64198473 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
64198500 GGTAATTTT
1 GGTAATTTT
64198509 GTAAATTGAG
Statistics
Matches: 168, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
26 13 0.08
27 142 0.85
28 13 0.08
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:64198343 original size:54 final size:53
Alignment explanation
Indices: 64198285--64198506 Score: 255
Period size: 54 Copynumber: 4.1 Consensus size: 53
64198275 AGGTAAAATG
* * * * * *
64198285 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTATAGGAGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAAAGG-GTATTTCA
* * * *
64198339 GTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTA-AAGGGTATTTCA
** *
64198393 GTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGTTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAAAGGG-TATTTCA
* * * *
64198447 ATATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTA-AAGGGTATTTCA
64198501 GTAATT
1 GTAATT
64198507 TTGTAAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 4 0.03
54 130 0.92
55 7 0.05
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAAAGGGTATTTCA
Found at i:64198418 original size:81 final size:81
Alignment explanation
Indices: 64198283--64198498 Score: 319
Period size: 81 Copynumber: 2.7 Consensus size: 81
64198273 AAAGGTAAAA
* * * *
64198283 TGGTAATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTA-TAGGAGTATTTTAGTAATTC
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTTAGTAATTC
64198346 TACCCTACAGGGGTATTT
64 TACCCTACAGGGGTATTT
64198364 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTA
*
64198429 CCCTACAGGGTTATTT
66 CCCTACAGGGGTATTT
*** *
64198445 CAATATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTT
64198499 CGGTAATTTT
Statistics
Matches: 124, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
80 4 0.03
81 117 0.94
82 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (81 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTA
CCCTACAGGGGTATTT
Found at i:64199000 original size:27 final size:27
Alignment explanation
Indices: 64198542--64198993 Score: 548
Period size: 27 Copynumber: 16.7 Consensus size: 27
64198532 TTCTGTAAAT
* **
64198542 CAGGGGTACTTTGGTAATTTTACAAGT
1 CAGGGGTATTTTGGTAATTTTACAAAC
** ***
64198569 C-GAGGGTATTTTAATAATTTTACAGGT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* * *
64198596 C-GAGGGTATTTTAGTAATTTCACAAAT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
64198623 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
64198650 TAGGGGTATTTTGATAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
64198677 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
64198704 TAAGGGTATTTTGGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
64198731 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
64198758 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
64198785 CAAGGGTATTTTGGTAATTATACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
64198812 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
64198839 CAAGGGTATTCTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
64198866 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
64198893 TAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
64198920 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
64198947 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
64198974 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
64198994 GGTAAACTAA
Statistics
Matches: 365, Mismatches: 58, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 363 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:64199003 original size:108 final size:108
Alignment explanation
Indices: 64198599--64199000 Score: 624
Period size: 108 Copynumber: 3.7 Consensus size: 108
64198589 TACAGGTCGA
* * * * * * * *
64198599 GGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
** * * *
64198664 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAA
66 TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
*
64198707 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
*
64198772 TAATTTTGTAAACCAAGGGTATTTTGGTAATTATACAAACCAG
66 TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* *
64198815 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
*
64198880 TAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACCAG
66 TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
*
64198923 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
*
64198988 TAATTTGGTAAAC
66 TAATTTTGTAAAC
64199001 TAAAGTATTC
Statistics
Matches: 272, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 272 1.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (108 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:64200287 original size:224 final size:223
Alignment explanation
Indices: 64199894--64200341 Score: 808
Period size: 224 Copynumber: 2.0 Consensus size: 223
64199884 AAAACTCCAA
64199894 TACAAAAATATTAATCCAAAACATATCTTTCATAATTTATCATCAAACATCACAAAACACAAATA
1 TACAAAAATATTAATCCAAAACATATCTTTCATAATTTATCATCAAACATCACAAAACACAAATA
*
64199959 TTCATCAATGGCATAACTCAAAATATTCATCAAAATCAGAAATTCTAGCATGGGTCGGATAGTAT
66 TTCATCAATGGCATAACTCAAAATATTCATCAAAATCAGAAATTCTAGCATAGGTCGGATAGTAT
*
64200024 TCGAAGCAAAGATATCAAAAACGTAAAAATTATAAAAAATCGAGCTAGTTACATACCTTGATCAA
131 TCGAAGCAAAGATATCAAAAACATAAAAATTATAAAAAATCGAGCTAGTTACATACCTTGATCAA
*
64200089 GCTTTGTTTTGGCCGAACCCTTGAAGGT
196 GCTTAGTTTTGGCCGAACCCTTGAAGGT
*
64200117 TACAAAACATATTAATCCAAAACATATCTTTCATAATTTATCATCAAACATCACAATACACAAAT
1 TACAAAA-ATATTAATCCAAAACATATCTTTCATAATTTATCATCAAACATCACAAAACACAAAT
*
64200182 ATTCATCAATGGCATAACTCAAAATATTCATCAAAATCAGAAATTCTTGCATAGGTC-GATAGTA
65 ATTCATCAATGGCATAACTCAAAATATTCATCAAAATCAGAAATTCTAGCATAGGTCGGATAGTA
*
64200246 TTCGAAGCAACGATATCAAAAACATAAAAATTATAAAAAAATCGAGCTAGTTACATACCTTGATC
130 TTCGAAGCAAAGATATCAAAAACATAAAAATTAT-AAAAAATCGAGCTAGTTACATACCTTGATC
*
64200311 AATCTTAGTTTTGGCCGAACCCTTGAAGGT
194 AAGCTTAGTTTTGGCCGAACCCTTGAAGGT
64200341 T
1 T
64200342 TTGTTTCTTA
Statistics
Matches: 216, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
223 46 0.21
224 170 0.79
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (223 bp):
TACAAAAATATTAATCCAAAACATATCTTTCATAATTTATCATCAAACATCACAAAACACAAATA
TTCATCAATGGCATAACTCAAAATATTCATCAAAATCAGAAATTCTAGCATAGGTCGGATAGTAT
TCGAAGCAAAGATATCAAAAACATAAAAATTATAAAAAATCGAGCTAGTTACATACCTTGATCAA
GCTTAGTTTTGGCCGAACCCTTGAAGGT
Found at i:64200356 original size:23 final size:23
Alignment explanation
Indices: 64200328--64200373 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
64200318 GTTTTGGCCG
64200328 AACCCTTGAAGGTTTTGTTTCTT
1 AACCCTTGAAGGTTTTGTTTCTT
*
64200351 AACCCTTGGAGGTTTTGTTTCTT
1 AACCCTTGAAGGTTTTGTTTCTT
64200374 TTCTTTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.48
Consensus pattern (23 bp):
AACCCTTGAAGGTTTTGTTTCTT
Found at i:64204365 original size:40 final size:40
Alignment explanation
Indices: 64204309--64204386 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
64204299 AAAACCACAG
* *
64204309 CTATAGATCGAGCATTAG-TGGCGCTTTTTGAAAAACACCA
1 CTATAGATCGACCATTAGCT-GCGCTTTCTGAAAAACACCA
* *
64204349 CTATAGGTCGACCATTAGCTGCTCTTTCTGAAAAACAC
1 CTATAGATCGACCATTAGCTGCGCTTTCTGAAAAACAC
64204387 TACAAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (40 bp):
CTATAGATCGACCATTAGCTGCGCTTTCTGAAAAACACCA
Found at i:64204520 original size:114 final size:114
Alignment explanation
Indices: 64204320--64204626 Score: 350
Period size: 114 Copynumber: 2.7 Consensus size: 114
64204310 TATAGATCGA
* * * *
64204320 GCATTAGTGGCGCTTTTTGAAAAACACCACTATAGGTCGACCATTAGC-TGCTCTTTCTGAAAAA
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCAT-CGCTTTCTGAAAAA
** *
64204384 CACTACAAAAAAATTAAGCACAACGCCATCGTTTTATGTGAGCTTTAATG
65 CACCGCAAAAAAATTAAACACAACGCCATCGTTTTATGTGAGCTTTAATG
* * ** *
64204434 GCATTAGCGGTACTTTTTAAAAAATGCCATTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
* * * * *
64204499 GCCGCAAAAAAATTAAACACAACGTCGTCGTTTTCTGTGAGCTTTAGTG
66 ACCGCAAAAAAATTAAACACAACGCCATCGTTTTATGTGAGCTTTAATG
* * ** * * *
64204548 GCATTAGCGGCGCTTTTTGAAAAACACC-GTATAGACCAAGCATTAGCAGCGCTTTTTGAAAAAC
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
* *
64204612 CCCG-TAAAAAATTAA
66 ACCGCAAAAAAATTAA
64204627 TTTAGTTTAT
Statistics
Matches: 162, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
112 10 0.06
113 33 0.20
114 118 0.73
115 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (114 bp):
GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
ACCGCAAAAAAATTAAACACAACGCCATCGTTTTATGTGAGCTTTAATG
Found at i:64204693 original size:21 final size:21
Alignment explanation
Indices: 64204669--64204718 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
64204659 GCTTATAATT
*
64204669 TAGGTTTTTTGGTTTATGGTC
1 TAGGTTTTATGGTTTATGGTC
* *
64204690 TAGGATTTATGGTTTATGGTT
1 TAGGTTTTATGGTTTATGGTC
64204711 TAAGGTTT
1 T-AGGTTT
64204719 GGGGGTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.54
Consensus pattern (21 bp):
TAGGTTTTATGGTTTATGGTC
Found at i:64205213 original size:14 final size:14
Alignment explanation
Indices: 64205183--64205211 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
64205173 TGGGGTTAAA
64205183 GGTTTATGGTTTAG
1 GGTTTATGGTTTAG
64205197 GGTTTA-GGTTTAG
1 GGTTTATGGTTTAG
64205210 GG
1 GG
64205212 GTAGGGGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (14 bp):
GGTTTATGGTTTAG
Found at i:64205382 original size:14 final size:14
Alignment explanation
Indices: 64205329--64205375 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
64205319 TACTATTTTC
*
64205329 GGTTTAGAGTTTTT
1 GGTTTAGAGTTTAT
* *
64205343 GGTTTGGGGTTTAT
1 GGTTTAGAGTTTAT
64205357 GGTTTAGAGTTTAT
1 GGTTTAGAGTTTAT
64205371 GGTTT
1 GGTTT
64205376 TTTGTTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.13, C:0.00, G:0.34, T:0.53
Consensus pattern (14 bp):
GGTTTAGAGTTTAT
Found at i:64207942 original size:2 final size:2
Alignment explanation
Indices: 64207935--64207960 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64207925 CGGCATTTTG
64207935 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
64207961 GATTATATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64210344 original size:85 final size:85
Alignment explanation
Indices: 64210130--64210375 Score: 304
Period size: 85 Copynumber: 2.9 Consensus size: 85
64210120 ATAATTTTTT
* * * *
64210130 TAAAGGTCATGTTCTTTAGCGGCGTTTATGAGAAAAGCACCGCTAAAGGT-TTGTTCTATAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTATG-GAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGG
*
64210194 CGTTTGT-GGGAAAGCGTCGC
65 CGTTTGTAGGAAAAGCGTCGC
64210214 TAAAGGTCATGTT-TTTAGCGGCGTTCCTA-GGAAAAGCG-CAGCTAAAGGTCATGTTCTTTAGC
1 TAAAGGTCATGTTCTTTAGCGGCGTT--TATGGAAAAGCGCCA-CTAAAGGTCATGTTCTTTAGC
* *
64210276 GACGTTTCTAGGAAAAGCGTCGC
63 GGCGTTTGTAGGAAAAGCGTCGC
* * * * * *
64210299 TAAAGGTTATGTTCTTTAGCGGCGTTTGTGGGAATGCGCCACTAAAGGTCATGTGCTTTAGCGGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTATGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGC
64210364 GTTTGTAGGAAA
66 GTTTGTAGGAAA
64210376 GTCATGTTCT
Statistics
Matches: 139, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
82 1 0.01
83 27 0.19
84 32 0.23
85 65 0.47
86 14 0.10
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (85 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTATGGAAAAGCGCCACTAAAGGTCATGTTCTTTAGCGGC
GTTTGTAGGAAAAGCGTCGC
Found at i:64210368 original size:42 final size:42
Alignment explanation
Indices: 64210130--64210375 Score: 280
Period size: 42 Copynumber: 5.8 Consensus size: 42
64210120 ATAATTTTTT
* *
64210130 TAAAGGTCATGTTCTTTAGCGGCGTTTATGAGAAAAGCACCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTG-GAAAAGCGCCGC
* * * *
64210173 TAAAGGT-TTGTTCTATAGCGGCGTTTGTGGGAAAGCGTCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGC
** *
64210214 TAAAGGTCATGTT-TTTAGCGGCGTTCCTAGGAAAAGCGCAGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGT-GGAAAAGCGCCGC
* * *
64210256 TAAAGGTCATGTTCTTTAGCGACGTTTCTAGGAAAAGCGTCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGT-GGAAAAGCGCCGC
* * * *
64210299 TAAAGGTTATGTTCTTTAGCGGCGTTTGTGGGAATGCGCCAC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGC
* *
64210341 TAAAGGTCATGTGCTTTAGCGGGGTTTGTAGGAAA
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGT-GGAAA
64210376 GTCATGTTCT
Statistics
Matches: 171, Mismatches: 28, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
41 28 0.16
42 81 0.47
43 62 0.36
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (42 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGC
Found at i:64210399 original size:30 final size:30
Alignment explanation
Indices: 64210346--64210405 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
64210336 GCCACTAAAG
** *
64210346 GTCATGTGCTTTAGCGGGGTTTGTAGGAAA
1 GTCATGTGCTTTAGCGGCATTTGTAAGAAA
*
64210376 GTCATGTTCTTTAGCGGCATTTGTAAGAAA
1 GTCATGTGCTTTAGCGGCATTTGTAAGAAA
64210406 AGCGCCACTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.35
Consensus pattern (30 bp):
GTCATGTGCTTTAGCGGCATTTGTAAGAAA
Found at i:64210497 original size:25 final size:25
Alignment explanation
Indices: 64210463--64210510 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
64210453 CCACAAAATG
64210463 TTAGCGATGTTGTCTTTAGCGGCGT
1 TTAGCGATGTTGTCTTTAGCGGCGT
64210488 TTAGCGATGTTGTCTTTAGCGGC
1 TTAGCGATGTTGTCTTTAGCGGC
64210511 ATTTTTTGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.17, G:0.31, T:0.40
Consensus pattern (25 bp):
TTAGCGATGTTGTCTTTAGCGGCGT
Found at i:64214455 original size:37 final size:35
Alignment explanation
Indices: 64214393--64214462 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 35
64214383 TTCCAAAAAT
*
64214393 AATATTATTTTAATAGTTTAATATTAAATTTAATTG
1 AATATTATTTTAATAATTTAATATT-AATTTAATTG
*
64214429 AATACTTATTTTAATAATATT-TTATTAATTTAAT
1 AATA-TTATTTTAATAAT-TTAATATTAATTTAAT
64214463 ATTAAAGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 12 0.40
37 16 0.53
38 2 0.07
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (35 bp):
AATATTATTTTAATAATTTAATATTAATTTAATTG
Found at i:64214475 original size:20 final size:18
Alignment explanation
Indices: 64214393--64214502 Score: 57
Period size: 19 Copynumber: 5.9 Consensus size: 18
64214383 TTCCAAAAAT
* *
64214393 AATATTATTTTAATAGTTT
1 AATATTAATTTAATA-TTA
*
64214412 AATATTAAATTT-A-ATTG
1 AATATT-AATTTAATATTA
* *
64214429 AATACTTATTTTAATAATA
1 AATA-TTAATTTAATATTA
**
64214448 TTTTATTAATTTAATATTA
1 -AATATTAATTTAATATTA
*
64214467 AAGTGATT-ATCTTATTATTA
1 AA-T-ATTAAT-TTAATATTA
64214487 AAT-TTAATTTAATATT
1 AATATTAATTTAATATT
64214503 TATCTTGTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 20
0.68 0.13 0.20
Matches are distributed among these distances:
17 19 0.28
18 6 0.09
19 25 0.36
20 19 0.28
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (18 bp):
AATATTAATTTAATATTA
Found at i:64223966 original size:49 final size:49
Alignment explanation
Indices: 64223905--64224086 Score: 256
Period size: 49 Copynumber: 3.7 Consensus size: 49
64223895 AACCTATCTA
*
64223905 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
* * * * *
64223954 GTACACATAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCG
** *
64224005 GTATGCATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
*
64224054 GTACACGTAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
64224087 CGTGACCTCA
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 69 0.61
50 6 0.05
51 38 0.34
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
Found at i:64224042 original size:100 final size:100
Alignment explanation
Indices: 64223909--64224091 Score: 339
Period size: 100 Copynumber: 1.8 Consensus size: 100
64223899 TATCTAGTAC
*
64223909 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCTTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCAC
64223974 TTAGTACTACACACGTGATCGAAGTTATCGGGTAT
66 TTAGTACTACACACGTGATCGAAGTTATCGGGTAT
* *
64224009 GCATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCAC
64224074 TTAGTACTACACACGTGA
66 TTAGTACTACACACGTGA
64224092 CCTCACAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCAC
TTAGTACTACACACGTGATCGAAGTTATCGGGTAT
Found at i:64226811 original size:13 final size:13
Alignment explanation
Indices: 64226793--64226817 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64226783 TCGACAGGGA
64226793 CATGCCCGTGTGT
1 CATGCCCGTGTGT
64226806 CATGCCCGTGTG
1 CATGCCCGTGTG
64226818 AGGTGGCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28
Consensus pattern (13 bp):
CATGCCCGTGTGT
Found at i:64228935 original size:18 final size:19
Alignment explanation
Indices: 64228912--64228958 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
64228902 ATTGAAAAAG
* * *
64228912 ATAAATAAAGATAAAAGTA
1 ATAAATAAAAACAAAAATA
64228931 A-AAATAAAAACAAAAATA
1 ATAAATAAAAACAAAAATA
64228949 ATAAATAAAA
1 ATAAATAAAA
64228959 GTCTTCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (19 bp):
ATAAATAAAAACAAAAATA
Found at i:64228940 original size:6 final size:6
Alignment explanation
Indices: 64228914--64228958 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
64228904 TGAAAAAGAT
* * *
64228914 AAATAA AGATAA AAGTAA AAATAA AAACAA AAATAA TAAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AA
64228959 GTCTTCAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:64231247 original size:53 final size:54
Alignment explanation
Indices: 64231139--64231372 Score: 198
Period size: 55 Copynumber: 4.4 Consensus size: 54
64231129 CATGACTTGC
* * * *
64231139 CATGGTCTTACGTGGTATCC-T---TT-TGAAACTTACCATTGCCATGTCTTGA
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTAA
* * * **
64231188 CATGGTCTTACATGGTATCCTGGCCTCATG-AACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTAA
* * * * *
64231241 CATGGTCTTACATGGGA-CCTTTGCCTTATAGCAAA-TTATCAATGTCGTGTCTTAA
1 CATGGTCTTACATGGTATCC-TTGCCTTAT-G-AAACTTACCAATGCCATGCCTTAA
* * * *
64231296 CATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTCCCATGCCTTAG
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAA-TGCCATGCCTTAA
64231351 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
64231373 AAACCCTAAT
Statistics
Matches: 144, Mismatches: 28, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
49 19 0.13
52 5 0.03
53 44 0.31
54 9 0.06
55 63 0.44
56 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTAA
Found at i:64238305 original size:49 final size:48
Alignment explanation
Indices: 64238249--64238345 Score: 115
Period size: 48 Copynumber: 2.0 Consensus size: 48
64238239 CCTGTATGAG
* * * *
64238249 GTGGCTTAGCCCATGT-CTAGAGTCTGCTAAATAGACATGGTCGTGTGGT
1 GTGGCTTAG-CC-TGTGCTACAATCTGCTAAATAGACACGGGCGTGTGGT
* *
64238298 GTGGCTTAGGCTGTGCTACAATCTGTTAAATAGACACGGGCGTGTGGT
1 GTGGCTTAGCCTGTGCTACAATCTGCTAAATAGACACGGGCGTGTGGT
64238346 TTACCCATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
47 3 0.07
48 29 0.71
49 9 0.22
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.30
Consensus pattern (48 bp):
GTGGCTTAGCCTGTGCTACAATCTGCTAAATAGACACGGGCGTGTGGT
Found at i:64241743 original size:38 final size:38
Alignment explanation
Indices: 64241692--64241767 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
64241682 CTTTTGCTGT
64241692 TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
1 TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
64241730 TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
1 TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
64241768 ACACTCACTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (38 bp):
TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
Found at i:64244427 original size:48 final size:47
Alignment explanation
Indices: 64244368--64244525 Score: 174
Period size: 48 Copynumber: 3.3 Consensus size: 47
64244358 CATGTCTCAG
* *
64244368 ACATGGGCTTACACTAGCTTTAATATTAATGCCGATGTCATGTTCCAA
1 ACATGGTCTTACACTAGCTTTAATATTAACGCCGATG-CATGTTCCAA
* * ** * * * *
64244416 ACATGGTCTTACACTGGC-TCACATATCGAGGCCAATGCATGTCCCAG
1 ACATGGTCTTACACTAGCTTTA-ATATTAACGCCGATGCATGTTCCAA
* *
64244463 ACATGGTCTTACACTAGCTCTCATATTAACGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTTTAATATTAACGCCGATG-CATGTTCCAA
64244511 ACATGGTCTTACACT
1 ACATGGTCTTACACT
64244526 GGCCTATATA
Statistics
Matches: 88, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
47 38 0.43
48 50 0.57
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (47 bp):
ACATGGTCTTACACTAGCTTTAATATTAACGCCGATGCATGTTCCAA
Found at i:64246138 original size:2 final size:2
Alignment explanation
Indices: 64246131--64246160 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
64246121 CAAATCAAAC
64246131 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64246161 GTATTTACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64246737 original size:19 final size:19
Alignment explanation
Indices: 64246686--64246754 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 19
64246676 CTGAGATGCT
*
64246686 AAACAAGGCA-CAAATGTGC
1 AAACAGGGCACCAAA-GTGC
*
64246705 ATACAGGAGCACCAAAGTGC
1 AAACAGG-GCACCAAAGTGC
64246725 AAACAGGGCACCAAAGTGC
1 AAACAGGGCACCAAAGTGC
64246744 ATAACAGGGCA
1 A-AACAGGGCA
64246755 TAGATCAGGG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
19 18 0.41
20 22 0.50
21 4 0.09
ACGTcount: A:0.43, C:0.23, G:0.25, T:0.09
Consensus pattern (19 bp):
AAACAGGGCACCAAAGTGC
Found at i:64247098 original size:2 final size:2
Alignment explanation
Indices: 64247091--64247121 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
64247081 ATGTTTCACA
64247091 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
64247122 CACACATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64254011 original size:145 final size:145
Alignment explanation
Indices: 64253829--64254107 Score: 540
Period size: 145 Copynumber: 1.9 Consensus size: 145
64253819 CATGTTGAAC
64253829 TGGATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
1 TGGATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
*
64253894 TGATCTTCAAGTCTTCCAATATAATCTTTAGTCATAACAACTCACAAACTCCAAGAGCCATTGCC
66 TGATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCC
64253959 CTAATCACGTTGAGG
131 CTAATCACGTTGAGG
*
64253974 TGGATTATGTGTGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
1 TGGATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
64254039 TGATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCC
66 TGATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCC
64254104 CTAA
131 CTAA
64254108 ATTCAGCTTC
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 132 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (145 bp):
TGGATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
TGATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCC
CTAATCACGTTGAGG
Found at i:64255719 original size:21 final size:21
Alignment explanation
Indices: 64255690--64255730 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
64255680 TGCTGGACAG
*
64255690 GAGCCGGAATGGGAGTGTTTA
1 GAGCCGGAATGAGAGTGTTTA
*
64255711 GAGCTGGAATGAGAGTGTTT
1 GAGCCGGAATGAGAGTGTTT
64255731 GGTTGCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.41, T:0.27
Consensus pattern (21 bp):
GAGCCGGAATGAGAGTGTTTA
Found at i:64259048 original size:16 final size:17
Alignment explanation
Indices: 64259017--64259048 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
64259007 CTCAGGACAA
64259017 ATGTTGTTCAAGAATAG
1 ATGTTGTTCAAGAATAG
64259034 ATGTTGTTC-AGAATA
1 ATGTTGTTCAAGAATA
64259049 ACCTCTACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (17 bp):
ATGTTGTTCAAGAATAG
Found at i:64262777 original size:67 final size:65
Alignment explanation
Indices: 64262662--64262793 Score: 192
Period size: 67 Copynumber: 2.0 Consensus size: 65
64262652 TTGGAAACTC
* **
64262662 AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGTCATTTAAATCTTACACTCACATTTTC
1 AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACA--CACATTTTC
64262727 TT
64 TT
* * *
64262729 AATCAAGAAAAATATTAAACTGTAATTTTGGCAAAAAGCCATACAAATCTTACACACATTTTCTT
1 AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACACACATTTTCTT
64262794 TCTGCAAGCA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 11 0.19
67 48 0.81
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.32
Consensus pattern (65 bp):
AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACACACATTTTCTT
Found at i:64265030 original size:9 final size:9
Alignment explanation
Indices: 64265016--64265064 Score: 73
Period size: 9 Copynumber: 5.3 Consensus size: 9
64265006 ATTAAAACAC
64265016 CTTTTTTTT
1 CTTTTTTTT
64265025 CTTTTTTTT
1 CTTTTTTTT
64265034 CTTTTTTTT
1 CTTTTTTTT
64265043 CTTTTTCTCTT
1 CTTTTT-T-TT
64265054 -TTTTTTTT
1 CTTTTTTTT
64265062 CTT
1 CTT
64265065 AGGGAATGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.05
9 27 0.73
10 6 0.16
11 2 0.05
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:64265040 original size:17 final size:18
Alignment explanation
Indices: 64265016--64265059 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
64265006 ATTAAAACAC
*
64265016 CTTTTTTTTCTTTTTTTT
1 CTTTTTTTTCTTTTTTCT
64265034 CTTTTTTTTC-TTTTTCT
1 CTTTTTTTTCTTTTTTCT
64265051 CTTTTTTTT
1 CTTTTTTTT
64265060 TTCTTAGGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (18 bp):
CTTTTTTTTCTTTTTTCT
Found at i:64268626 original size:29 final size:29
Alignment explanation
Indices: 64268536--64268753 Score: 296
Period size: 29 Copynumber: 7.5 Consensus size: 29
64268526 ACTCGATTTC
* * **
64268536 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
64268565 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
64268593 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
64268623 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
64268652 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
64268681 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
64268710 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
64268739 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
64268754 ATCTCGTCAC
Statistics
Matches: 169, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
28 2 0.01
29 166 0.98
30 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:64270064 original size:18 final size:17
Alignment explanation
Indices: 64270041--64270084 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
64270031 TCCACAATCT
64270041 TTTTTTTTCATCATTTTC
1 TTTTTTTTCATCA-TTTC
**
64270059 TTTTTTTTTTTCATTTC
1 TTTTTTTTCATCATTTC
*
64270076 TTTATTTTC
1 TTTTTTTTC
64270085 CTTCCATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTTTTCATCATTTC
Found at i:64271601 original size:58 final size:58
Alignment explanation
Indices: 64271537--64271652 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 58
64271527 TTTGCATGAA
* *
64271537 TTACTAGGTAAAAAGTACAGTAGATAACTTTATATTTTAGAGTTGTCATTTGGTTCAT
1 TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
* *
64271595 TTACTAGTTAAAAAGTACCGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
1 TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
64271653 GTTGTTCAAG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (58 bp):
TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
Found at i:64273396 original size:46 final size:46
Alignment explanation
Indices: 64273215--64273396 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
64273205 TTTGACATGA
* * * * * *
64273215 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
64273261 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
64273307 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
64273353 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
64273397 AGAGCACACT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 120 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:64275547 original size:11 final size:11
Alignment explanation
Indices: 64275531--64275582 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
64275521 TATACTAAAT
64275531 AAATAATAATA
1 AAATAATAATA
*
64275542 AAATAAT-ATT
1 AAATAATAATA
* *
64275552 AAATATCTCATA
1 AAATA-ATAATA
*
64275564 AAATATTAATA
1 AAATAATAATA
64275575 AAATAATA
1 AAATAATA
64275583 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:64278602 original size:46 final size:46
Alignment explanation
Indices: 64278421--64278602 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
64278411 TTTGACATGA
* * * * * *
64278421 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
64278467 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
64278513 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
64278559 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
64278603 AGAGCACACT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 120 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:64280749 original size:11 final size:11
Alignment explanation
Indices: 64280733--64280784 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
64280723 TATACTAAAT
64280733 AAATAATAATA
1 AAATAATAATA
*
64280744 AAATAAT-ATT
1 AAATAATAATA
* *
64280754 AAATATCTCATA
1 AAATA-ATAATA
*
64280766 AAATATTAATA
1 AAATAATAATA
64280777 AAATAATA
1 AAATAATA
64280785 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:64282326 original size:22 final size:22
Alignment explanation
Indices: 64282300--64282341 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
64282290 ACCATGTAGA
**
64282300 AGGAGACACACGGTCGTGTTGG
1 AGGAGACACACAATCGTGTTGG
64282322 AGGAGACACACAATCGTGTT
1 AGGAGACACACAATCGTGTT
64282342 CTAAGACCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.19, G:0.33, T:0.19
Consensus pattern (22 bp):
AGGAGACACACAATCGTGTTGG
Found at i:64282576 original size:21 final size:21
Alignment explanation
Indices: 64282550--64282589 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64282540 TAAAAACACA
*
64282550 TCAAAAGTATGCCAAATCATG
1 TCAAAAGTATACCAAATCATG
*
64282571 TCAAAATTATACCAAATCA
1 TCAAAAGTATACCAAATCA
64282590 CAATCAACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.25
Consensus pattern (21 bp):
TCAAAAGTATACCAAATCATG
Found at i:64286404 original size:17 final size:18
Alignment explanation
Indices: 64286357--64286410 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
64286347 ATAGCTCATC
*
64286357 AGAACTGTGAGCGCACCA
1 AGAACTGTGAGCTCACCA
*
64286375 AGAACTATGAGCTCACCA
1 AGAACTGTGAGCTCACCA
*
64286393 AGATC-GTGAGCTCACCA
1 AGAACTGTGAGCTCACCA
64286410 A
1 A
64286411 CACTGCAAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 12 0.38
18 20 0.62
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (18 bp):
AGAACTGTGAGCTCACCA
Found at i:64286438 original size:17 final size:18
Alignment explanation
Indices: 64286400--64286442 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
64286390 CCAAGATCGT
64286400 GAGCTCACCAACACTGCA
1 GAGCTCACCAACACTGCA
64286418 -AGCTCACCAA-ACATG-A
1 GAGCTCACCAACAC-TGCA
64286434 GAGCTCACC
1 GAGCTCACC
64286443 TACGAGCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.35, C:0.37, G:0.16, T:0.12
Consensus pattern (18 bp):
GAGCTCACCAACACTGCA
Found at i:64288099 original size:40 final size:40
Alignment explanation
Indices: 64288062--64288285 Score: 262
Period size: 39 Copynumber: 5.7 Consensus size: 40
64288052 GCTACTCGTT
* *
64288062 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
64288102 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
64288142 CCAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
64288181 CCAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * * *
64288220 CGAATGCCTTC-GGATCTTAGTCTGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
64288261 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64288286 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 80 0.49
40 71 0.44
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:64288176 original size:79 final size:79
Alignment explanation
Indices: 64288064--64288285 Score: 279
Period size: 79 Copynumber: 2.8 Consensus size: 79
64288054 TACTCGTTCA
* * * *
64288064 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAA
64288129 TTAGTAACTCGCACC
65 TTAGTAACTCGCACC
* *
64288144 AATGCCTTCGGACTTAGCCCGGA-ATTAGTAACTCGCACCAATGCC-TTCGGACTTAGCCCGGAA
1 AATGCCTTCGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAA
*
64288207 TTAGTAACTCGCACG
65 TTAGTAACTCGCACC
* * * * *
64288222 AATGCCTTCGGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTTGGGACTTAGCCCGGA
64288286 CATCATTCGA
Statistics
Matches: 123, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
78 42 0.34
79 49 0.40
80 32 0.26
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAT
TAGTAACTCGCACC
Found at i:64297599 original size:14 final size:14
Alignment explanation
Indices: 64297580--64297608 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
64297570 TCTCATAATC
64297580 TATAAATTTTGAGG
1 TATAAATTTTGAGG
64297594 TATAAATTTTGAGG
1 TATAAATTTTGAGG
64297608 T
1 T
64297609 GTATCTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (14 bp):
TATAAATTTTGAGG
Found at i:64300727 original size:38 final size:38
Alignment explanation
Indices: 64300680--64300917 Score: 341
Period size: 38 Copynumber: 6.3 Consensus size: 38
64300670 GGCTCAAAGG
* * * *
64300680 CCCGAATATAATACCAGCACTAGGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
64300718 ACCGGATATAATACCAGCAAGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
64300756 CCCGGATATATTACCAGCATGAAGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
64300794 CCCGGGTATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
64300832 CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
64300870 CCCGGATATATTACCAGCACGAAGCTTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
64300908 CCCAGATATA
1 CCCGGATATA
64300918 CATCGAATAT
Statistics
Matches: 180, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 180 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:64304168 original size:3 final size:3
Alignment explanation
Indices: 64304160--64304195 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
64304150 TCACTCATCT
64304160 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
64304196 TAATAATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:64304200 original size:3 final size:3
Alignment explanation
Indices: 64304194--64304261 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
64304184 CAACAACAAC
64304194 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
64304242 AAT AAT AAT GAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
64304262 CCTCATATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:64304925 original size:20 final size:20
Alignment explanation
Indices: 64304886--64304928 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
64304876 AAATCCCTAG
* **
64304886 TTTTTCCTTTTCTTTTTTTC
1 TTTTCCCTTTTCTTCCTTTC
64304906 TTTTCCCTTTTCTTCCTTTC
1 TTTTCCCTTTTCTTCCTTTC
64304926 TTT
1 TTT
64304929 CCCGTTTGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTCCCTTTTCTTCCTTTC
Found at i:64305215 original size:32 final size:30
Alignment explanation
Indices: 64305178--64305259 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
64305168 ATTATTTAAT
*
64305178 TAATAAATATCT-TTTAACTTAATAATAATAAG
1 TAATAAATATCTATTT-ACTT-A-AATAATAAA
64305210 TAATAAATATCTATTTACTTAAATAATAAA
1 TAATAAATATCTATTTACTTAAATAATAAA
*
64305240 TAATTAAATATTTATGTTAC
1 TAA-TAAATATCTAT-TTAC
64305260 AATTATATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 11 0.24
31 11 0.24
32 20 0.44
33 3 0.07
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (30 bp):
TAATAAATATCTATTTACTTAAATAATAAA
Found at i:64312495 original size:17 final size:18
Alignment explanation
Indices: 64312475--64312516 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
64312465 CAAAATAGTA
64312475 AGCTCACCT-GAACTGCG
1 AGCTCACCTAGAACTGCG
*
64312492 AGCTCA-CTATAACTGCG
1 AGCTCACCTAGAACTGCG
64312509 AGCTCACC
1 AGCTCACC
64312517 AAAATGTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 19 0.86
18 1 0.05
ACGTcount: A:0.26, C:0.36, G:0.19, T:0.19
Consensus pattern (18 bp):
AGCTCACCTAGAACTGCG
Found at i:64317985 original size:21 final size:21
Alignment explanation
Indices: 64317961--64318010 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
64317951 ACAGCCACTG
64317961 TTTTTCCTGTTTTGGAACCTA
1 TTTTTCCTGTTTTGGAACCTA
* *
64317982 TTTTTCCTGTTTTGGAACTTG
1 TTTTTCCTGTTTTGGAACCTA
64318003 TTTTTCCT
1 TTTTTCCT
64318011 ATCTCCACTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (21 bp):
TTTTTCCTGTTTTGGAACCTA
Found at i:64323555 original size:4 final size:4
Alignment explanation
Indices: 64323546--64323575 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
64323536 TTGCTATTCT
64323546 GGAG GGAG GGAG GGAG GGAG GGAG GGAG GG
1 GGAG GGAG GGAG GGAG GGAG GGAG GGAG GG
64323576 GCAAAGAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.77, T:0.00
Consensus pattern (4 bp):
GGAG
Found at i:64328446 original size:25 final size:25
Alignment explanation
Indices: 64328417--64328466 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
64328407 TATATAAAAG
64328417 TTAACTTTAATGTATGTATATTATA
1 TTAACTTTAATGTATGTATATTATA
64328442 TTAACTTTAATGTATGTATATTATA
1 TTAACTTTAATGTATGTATATTATA
64328467 ATAAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (25 bp):
TTAACTTTAATGTATGTATATTATA
Found at i:64329728 original size:20 final size:19
Alignment explanation
Indices: 64329673--64329720 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
64329663 ATGTCAGAGT
* *
64329673 TGAGAAATG-ATTATGAGA
1 TGAGAAATGAAATATGAAA
64329691 TGAGAAATGAAATATGAAA
1 TGAGAAATGAAATATGAAA
64329710 TGATGAAATGA
1 TGA-GAAATGA
64329721 GATGTGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 9 0.35
19 10 0.38
20 7 0.27
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (19 bp):
TGAGAAATGAAATATGAAA
Found at i:64331074 original size:24 final size:24
Alignment explanation
Indices: 64331012--64331147 Score: 84
Period size: 23 Copynumber: 5.8 Consensus size: 24
64331002 AGACTCACTA
* * *
64331012 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCATAAGAGCTTACCG-T-TTT
* **
64331038 CAGCTCAAAAGAGCTTATTGTTTT
1 CAGCTCATAAGAGCTTACCGTTTT
*
64331062 CAGCTCATTAGAGCTTACCGTTTT
1 CAGCTCATAAGAGCTTACCGTTTT
* * *
64331086 -AGCTCATATGAGATTA-C-TGTT
1 CAGCTCATAAGAGCTTACCGTTTT
*
64331107 CAGCTCGAT-AGAGCTTACC-ATTT
1 CAGCTC-ATAAGAGCTTACCGTTTT
* * *
64331130 CATCTTATTAGAGCTTAC
1 CAGCTCATAAGAGCTTAC
64331148 TGTTCATCGA
Statistics
Matches: 86, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
21 3 0.03
22 14 0.16
23 31 0.36
24 22 0.26
25 1 0.01
26 15 0.17
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.35
Consensus pattern (24 bp):
CAGCTCATAAGAGCTTACCGTTTT
Found at i:64331148 original size:45 final size:45
Alignment explanation
Indices: 64331060--64331153 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 45
64331050 GCTTATTGTT
* *
64331060 TTCAGCTCATTAGAGCTTACCGTTTTAGCTCATATGAGATTACTG
1 TTCAGCTCATTAGAGCTTACCATTTCAGCTCATATGAGATTACTG
* * *
64331105 TTCAGCTCGA-TAGAGCTTACCATTTCATCTTAT-TAGAGCTTACTG
1 TTCAGCTC-ATTAGAGCTTACCATTTCAGCTCATAT-GAGATTACTG
64331150 TTCA
1 TTCA
64331154 TCGACTCAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
44 1 0.02
45 40 0.95
46 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.38
Consensus pattern (45 bp):
TTCAGCTCATTAGAGCTTACCATTTCAGCTCATATGAGATTACTG
Found at i:64335590 original size:24 final size:24
Alignment explanation
Indices: 64335563--64335769 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
64335553 CTTATTATGT
* * *
64335563 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
64335587 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
64335611 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64335635 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64335659 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
64335683 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
64335707 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
64335731 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
64335755 TCGCACACATAGTGC
1 TCGCACACATAGTGC
64335770 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:64337851 original size:46 final size:46
Alignment explanation
Indices: 64337801--64337973 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
64337791 TGGTTGAGCA
*
64337801 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
64337847 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
64337894 TCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
64337940 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64337974 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64337957 original size:93 final size:93
Alignment explanation
Indices: 64337798--64337968 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
64337788 GGATGGTTGA
* * *
64337798 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
64337863 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
64337891 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
64337956 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64337969 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64350153 original size:40 final size:40
Alignment explanation
Indices: 64350068--64350218 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
64350058 AATTGAATGA
* * *
64350068 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
64350108 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
64350149 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
64350188 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
64350219 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:64350232 original size:40 final size:40
Alignment explanation
Indices: 64350104--64350234 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
64350094 TATGCTGGAA
* * *
64350104 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
64350144 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
64350184 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
64350224 ATTATATCCGG
1 ATTATATCCGG
64350235 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:64358162 original size:40 final size:40
Alignment explanation
Indices: 64358077--64358227 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
64358067 AATTGAATGA
* * *
64358077 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
64358117 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
64358158 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
64358197 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
64358228 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:64358241 original size:40 final size:40
Alignment explanation
Indices: 64358113--64358243 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
64358103 TATGCTGGAA
* * *
64358113 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
64358153 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
64358193 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
64358233 ATTATATCCGG
1 ATTATATCCGG
64358244 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:64361134 original size:48 final size:48
Alignment explanation
Indices: 64360954--64361134 Score: 159
Period size: 48 Copynumber: 3.8 Consensus size: 48
64360944 AAGCTGAAGC
* *** *
64360954 CATGTCCCAGACAGGTCTTACACTACTAGCTTGTATATCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTT--AC-ACTAGCTCACATATCTCGAGGCCGATG
* * * * *
64361005 CATGTCCCAGACATGCCTTACACTAGCTCTC--GTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCACATATCTCGAGGCCGATG
* * * * *
64361051 CATGTCCCAGACATGTCTTACACTGGTTTAAATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCACATATCTCGAGGCCGATG
* * *
64361099 CATGTCCCAGACGTGTCTGACACTAGCACACATATC
1 CATGTCCCAGACATGTCTTACACTAGCTCACATATC
64361135 ACCCATTATC
Statistics
Matches: 102, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
46 36 0.35
48 47 0.46
49 2 0.02
51 17 0.17
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTCACATATCTCGAGGCCGATG
Found at i:64366673 original size:53 final size:54
Alignment explanation
Indices: 64366603--64366799 Score: 216
Period size: 55 Copynumber: 3.6 Consensus size: 54
64366593 AACTTATCAT
* * *
64366603 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAATTTACCAT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAATTTACCAA
* * * * * *
64366656 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AATTTACCAA
* * * * * * *
64366711 TGCCATGTCTTGACATGGTCTTTCATGATTTCCTTGCCTTGTAAAACTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAATTTACCAA
* *
64366765 TGCCATGCCTTGCCATGGTCTTACTTGGTATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
64366800 AAAGCCTAAT
Statistics
Matches: 115, Mismatches: 27, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 37 0.32
54 37 0.32
55 41 0.36
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAATTTACCAA
Found at i:64366748 original size:55 final size:53
Alignment explanation
Indices: 64366596--64366799 Score: 210
Period size: 53 Copynumber: 3.8 Consensus size: 53
64366586 CTTTTTAAAC
*
64366596 TTATCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAAT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAT
* * * * * *
64366649 TTACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AAT
* * * * * * *
64366704 TTATCAATGCCATGTCTTGACATGGTCTTTCATGATTTCCTTGCCTTGTAAAAC
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAAT
* * * * *
64366758 TTACCAATGCCATGCCTTGCCATGGTCTTACTTGGTATCCTT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTT
64366800 AAAGCCTAAT
Statistics
Matches: 121, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 41 0.34
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.40
Consensus pattern (53 bp):
TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAT
Found at i:64367819 original size:20 final size:20
Alignment explanation
Indices: 64367794--64367831 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64367784 GTTTATTCGC
*
64367794 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
64367814 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
64367832 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:64369499 original size:27 final size:27
Alignment explanation
Indices: 64369468--64369557 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
64369458 TAGAACACGA
64369468 AATTACCCTTAAAGAGCAAAATTACCG
1 AATTACCCTTAAAGAGCAAAATTACCG
*
64369495 AATTACCCCTAAAGAGCAAAATTACCG
1 AATTACCCTTAAAGAGCAAAATTACCG
* *
64369522 AAATTACCCTTAAGGAGTAAAATTACC-
1 -AATTACCCTTAAAGAGCAAAATTACCG
64369549 AATATACCC
1 AAT-TACCC
64369558 CTAGGGTTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 3 0.05
27 31 0.54
28 23 0.40
ACGTcount: A:0.44, C:0.23, G:0.10, T:0.22
Consensus pattern (27 bp):
AATTACCCTTAAAGAGCAAAATTACCG
Found at i:64380534 original size:28 final size:29
Alignment explanation
Indices: 64380480--64380537 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
64380470 ACAGGGGTTT
* *
64380480 TTCACATGGCCAGGCACACGCCCGTGTCC
1 TTCACACGGCCACGCACACGCCCGTGTCC
*
64380509 TTCACACGGCCACG-ACACGCTCGTGTCC
1 TTCACACGGCCACGCACACGCCCGTGTCC
64380537 T
1 T
64380538 AGCCCGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.17, C:0.41, G:0.22, T:0.19
Consensus pattern (29 bp):
TTCACACGGCCACGCACACGCCCGTGTCC
Found at i:64381558 original size:47 final size:45
Alignment explanation
Indices: 64381489--64381751 Score: 233
Period size: 47 Copynumber: 5.6 Consensus size: 45
64381479 GTAAGGTGCT
64381489 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-TACAAGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCACATCT-CAAGTC
* * * * *
64381536 GATGCCATGTCCTAGACATGGTCTTACATTGACT-ATCATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTC-AAGTC
* * *
64381584 GATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GTC
* * * * *
64381630 GATGCATATCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GTC
* * *** *
64381676 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCACAT-CTCAAGTC
64381724 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
64381752 AGCCAACAAC
Statistics
Matches: 183, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 74 0.40
47 76 0.42
48 31 0.17
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGTC
Found at i:64381727 original size:94 final size:92
Alignment explanation
Indices: 64381489--64381754 Score: 278
Period size: 94 Copynumber: 2.8 Consensus size: 92
64381479 GTAAGGTGCT
* *
64381489 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTACAAGT--CGATGCCATGTCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-T--AAGTGGCGATG-CATGTCCCAGA
* *
64381552 CATGGTCTTACA-TTGACTATCATCTCGTAGCC
62 CAT-GTCTTACACTAG-CTATCATCTCATAGCC
* * *
64381584 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGTC-TCAAG-GTCGATGCATATCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCAT-AAGTGGCGATGCATGTCCCAGA
* *
64381645 CATGTCTTACACTAGCTCTCGTCTCA-ATGCC
62 CATGTCTTACACTAGCTATCATCTCATA-GCC
64381676 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGACGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA-GTGG-CGATGCATGTCCCAGACA
64381741 TGTCTTACACTAGC
64 TGTCTTACACTAGC
64381755 CAACAACAAC
Statistics
Matches: 147, Mismatches: 11, Indels: 27
0.79 0.06 0.15
Matches are distributed among these distances:
91 5 0.03
92 26 0.18
93 46 0.31
94 64 0.44
95 5 0.03
96 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGTGGCGATGCATGTCCCAGACATG
TCTTACACTAGCTATCATCTCATAGCC
Found at i:64381750 original size:140 final size:141
Alignment explanation
Indices: 64381489--64381754 Score: 369
Period size: 140 Copynumber: 1.9 Consensus size: 141
64381479 GTAAGGTGCT
* * * *
64381489 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTACAAGTCGATGCCATGTCCTAGACA
1 GATGCCATATCCCAGACATGGTCTTACACTAGCTCACATTACAAGCCGATGCCATGTCCCAGACA
* * *
64381554 TGGTCTTACATTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTAC
66 TGGTCTTACACTGACTATCATATCGTAGACGATGCATGTCCCAGACATGTCTTACACTAGCTTAC
64381619 GTCTCAAGGTC
131 GTCTCAAGGTC
* *
64381630 GATG-CATATCCCAGACAT-GTCTTACACTAGCTCTCGTCT-CAATGCCGATGCCATGTCCCAGA
1 GATGCCATATCCCAGACATGGTCTTACACTAGCTCACAT-TACAA-GCCGATGCCATGTCCCAGA
* * *
64381692 CATGGTCTTACACTGGCTCTCATAAT-GTGGACGATGCATGTCCCAGACATGTCTTACACTAGC
64 CATGGTCTTACACTGACTATCAT-ATCGTAGACGATGCATGTCCCAGACATGTCTTACACTAGC
64381755 CAACAACAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
139 19 0.17
140 86 0.78
141 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
GATGCCATATCCCAGACATGGTCTTACACTAGCTCACATTACAAGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGACTATCATATCGTAGACGATGCATGTCCCAGACATGTCTTACACTAGCTTAC
GTCTCAAGGTC
Found at i:64390639 original size:39 final size:39
Alignment explanation
Indices: 64390596--64390724 Score: 134
Period size: 40 Copynumber: 3.3 Consensus size: 39
64390586 CGGAATATAA
64390596 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAG
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAG
* *** * *
64390635 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAG
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAG
* * * *
64390674 CCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 -CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTT-AG
64390715 CCGGATATAA
1 CCGGATATAA
64390725 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.46
40 36 0.51
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAG
Found at i:64390702 original size:40 final size:39
Alignment explanation
Indices: 64390612--64390761 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
64390602 ATAACCACGT
* *
64390612 GCACAAATGCCTTCGGGTCTTAG-CCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
64390651 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
64390691 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
64390731 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
64390762 TTATTCAATT
Statistics
Matches: 91, Mismatches: 14, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 26 0.29
40 63 0.69
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:64390759 original size:80 final size:79
Alignment explanation
Indices: 64390612--64390760 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
64390602 ATAACCACGT
* *
64390612 GCACAAATGCCTTCGGGTCTTAGCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCCC
64390677 GGATGTAGCCACTA
66 GGATGTAGCCACTA
* * * * *
64390691 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTT-ACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
64390754 CCCGGAT
63 CCCGGAT
64390761 ATTATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 23 0.38
80 37 0.62
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:64391419 original size:12 final size:12
Alignment explanation
Indices: 64391402--64391429 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
64391392 TGCTAGGCCG
64391402 AATTGTGCTTGC
1 AATTGTGCTTGC
64391414 AATTGTGCTTGC
1 AATTGTGCTTGC
64391426 AATT
1 AATT
64391430 TCACAAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (12 bp):
AATTGTGCTTGC
Done.