Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 209 of 438
Found at i:64741521 original size:118 final size:118
Alignment explanation
Indices: 64741261--64741575 Score: 461
Period size: 118 Copynumber: 2.6 Consensus size: 118
64741251 TCGAATGATG
* * * * * **
64741261 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATT
*
64741325 TGTGCGAGTTACTAAATCCAAACTAAGATCCGAAGGCATTTGTACGAGTTACTAAT
63 TGTGCGAGTTACTAAATCCAAACTAAAATCCGAAGGCATTTGTACGAGTTACTAAT
64741381 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
* * ** *
64741446 GCGAGTTATTAAATTCGGACTAAAATCCGAAGGCATTTGTGCGAGTTACTAAT
66 GCGAGTTACTAAATCCAAACTAAAATCCGAAGGCATTTGTACGAGTTACTAAT
*
64741499 TCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCTCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTC-CGAAGGCATTTG
64741564 TGCGAGTTACTA
65 TGCGAGTTACTA
64741576 TAACCGGGCT
Statistics
Matches: 178, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
118 113 0.63
119 48 0.27
120 17 0.10
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (118 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGTTACTAAATCCAAACTAAAATCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:64750612 original size:39 final size:39
Alignment explanation
Indices: 64750558--64750701 Score: 227
Period size: 39 Copynumber: 3.7 Consensus size: 39
64750548 GAATGTTCGA
64750558 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64750597 GTGATA-CCTGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCC-GGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
64750636 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
64750675 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
64750702 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
38 2 0.02
39 82 0.86
40 11 0.12
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:64750648 original size:78 final size:79
Alignment explanation
Indices: 64750559--64750741 Score: 262
Period size: 78 Copynumber: 2.3 Consensus size: 79
64750549 AATGTTCGAG
64750559 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCTGGGCTAAG-CCCGAAGG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCC-GGGCTAAGTCCCGAAGG
64750622 CAATTGTGCGAGTTA
65 CAATTGTGCGAGTTA
*
64750637 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
64750702 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
64750716 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
64750742 TTTGAACGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
78 51 0.54
79 34 0.36
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:64752879 original size:79 final size:80
Alignment explanation
Indices: 64752724--64753067 Score: 473
Period size: 79 Copynumber: 4.3 Consensus size: 80
64752714 TCGAATGATG
* * * *
64752724 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGACCCGAAGGCATT
64752788 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * *
64752804 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAA-ACCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGACCCGAAGGCATT
*
64752867 GGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * *
64752883 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGACCCGAAGGCATTT
*
64752948 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAA
* ** *
64752963 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGACCCGAAGGCATTT
64753027 GTGCGAGTTACTATAA
66 GTGCGAGTTACTA-AA
*
64753043 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64753068 AACGAGTAGC
Statistics
Matches: 232, Mismatches: 26, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.00
79 140 0.60
80 83 0.36
81 8 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGACCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:64753074 original size:40 final size:40
Alignment explanation
Indices: 64752724--64753067 Score: 459
Period size: 40 Copynumber: 8.7 Consensus size: 40
64752714 TCGAATGATG
* * *
64752724 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
64752764 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64752804 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64752844 TCCGGGCTAA-ACCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64752883 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64752923 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64752963 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64753002 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64753043 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64753068 AACGAGTAGC
Statistics
Matches: 273, Mismatches: 23, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
39 69 0.25
40 193 0.71
41 11 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64753086 original size:119 final size:119
Alignment explanation
Indices: 64752724--64753067 Score: 525
Period size: 119 Copynumber: 2.9 Consensus size: 119
64752714 TCGAATGATG
* * * * **
64752724 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
64752787 TTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
63 TTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
* *
64752844 TCCGGGCTAAACCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
64752909 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
66 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
64752963 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
* *
64753028 TGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
66 TGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
64753068 AACGAGTAGC
Statistics
Matches: 208, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
118 2 0.01
119 188 0.90
120 18 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:64756628 original size:22 final size:20
Alignment explanation
Indices: 64756603--64756643 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
64756593 AAACATAAAA
64756603 AACTAAAAAATAATATATTAAC
1 AACTAAAAAAT--TATATTAAC
*
64756625 AACTAAATAATTATATTAA
1 AACTAAAAAATTATATTAA
64756644 TTAAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (20 bp):
AACTAAAAAATTATATTAAC
Found at i:64759824 original size:17 final size:17
Alignment explanation
Indices: 64759802--64759858 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
64759792 TTTTATGAAT
64759802 AAAAGATTTATTAATTA
1 AAAAGATTTATTAATTA
** **
64759819 AAAAGATGAATTAAAAA
1 AAAAGATTTATTAATTA
*
64759836 ACAATATATTTATTAATTA
1 A-AA-AGATTTATTAATTA
64759855 AAAA
1 AAAA
64759859 TAAAAAAAGC
Statistics
Matches: 29, Mismatches: 9, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
17 15 0.52
18 4 0.14
19 10 0.34
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (17 bp):
AAAAGATTTATTAATTA
Found at i:64761693 original size:15 final size:17
Alignment explanation
Indices: 64761673--64761704 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64761663 TCATTTCATT
64761673 TATAT-AAT-CATAAAA
1 TATATAAATGCATAAAA
64761688 TATATAAATGCATAAAA
1 TATATAAATGCATAAAA
64761705 AGATTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 3 0.20
17 7 0.47
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (17 bp):
TATATAAATGCATAAAA
Found at i:64763519 original size:29 final size:29
Alignment explanation
Indices: 64763477--64763534 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
64763467 TAAATAAATT
64763477 CTTTTTTAGAACTACATAGATCTATGGAA
1 CTTTTTTAGAACTACATAGATCTATGGAA
*
64763506 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTAGAACTACATAGATCTATGGAA
64763535 TCGATTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (29 bp):
CTTTTTTAGAACTACATAGATCTATGGAA
Found at i:64767227 original size:21 final size:21
Alignment explanation
Indices: 64767203--64767242 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64767193 TTTATCAGTA
*
64767203 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
64767224 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
64767243 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:64767823 original size:11 final size:11
Alignment explanation
Indices: 64767807--64767831 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
64767797 CTTTATATTT
64767807 ATATACAATAA
1 ATATACAATAA
64767818 ATATACAATAA
1 ATATACAATAA
64767829 ATA
1 ATA
64767832 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:64780828 original size:46 final size:46
Alignment explanation
Indices: 64780761--64780936 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
64780751 TGTAACCCGC
* *
64780761 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
* * *
64780807 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTAGCAT
* *** * * * *
64780853 ACATCTCTTGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
*
64780900 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
64780937 TGCCTAAATA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
Found at i:64780876 original size:93 final size:93
Alignment explanation
Indices: 64780769--64780942 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
64780759 GCCCATAAGC
* *
64780769 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64780834 CGAGCTCGGATGCCTAGTTACATCTCTT
66 CGAGCTCGGATGCCTAGTTACATCTCTT
* *
64780862 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
64780927 CGAGTTCGGATGCCTA
66 CGAGCTCGGATGCCTA
64780943 AATATCCCGG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTT
Found at i:64788471 original size:21 final size:21
Alignment explanation
Indices: 64788432--64788471 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64788422 TTTATTTAAA
*
64788432 AATATAAATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
64788453 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
64788472 TGCTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:64788615 original size:14 final size:14
Alignment explanation
Indices: 64788596--64788624 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
64788586 TAGATAAATA
64788596 ATAATCTATATAAC
1 ATAATCTATATAAC
64788610 ATAATCTATATAAC
1 ATAATCTATATAAC
64788624 A
1 A
64788625 AAGTAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:64792795 original size:29 final size:27
Alignment explanation
Indices: 64792761--64792863 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
64792751 TACTCAATCA
*
64792761 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
64792790 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
64792819 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
64792848 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
64792864 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:64801523 original size:40 final size:40
Alignment explanation
Indices: 64801478--64801645 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
64801468 CGGAATATAA
64801478 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
64801518 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
64801558 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
64801598 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
64801638 CCGGATAT
1 CCGGATAT
64801646 TATTCGATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64808850 original size:28 final size:28
Alignment explanation
Indices: 64808813--64808967 Score: 84
Period size: 29 Copynumber: 5.4 Consensus size: 28
64808803 AATCTCATTT
* *
64808813 CACACTTAGTGCCCACTGACCGATCTCG
1 CACACATAGTGCCCATTGACCGATCTCG
** *
64808841 CACACATAGTGCTCGGTTGGA--GAACTCG
1 CACACATAGTGC-CCATT-GACCGATCTCG
* *
64808869 CACACACAGTGCCTCATTTACCGATCTCG
1 CACACATAGTGCC-CATTGACCGATCTCG
* ** * **
64808898 CTCACATAGTGCTCGGTTAAGGGAAT-TCG
1 CACACATAGTGC-CCATTGACCG-ATCTCG
* *
64808927 CACACACAGTGCCTCAATT-ACTGATCTCG
1 CACACATAGTGCC-C-ATTGACCGATCTCG
64808956 CACACATAGTGC
1 CACACATAGTGC
64808968 TCGGTTAAAG
Statistics
Matches: 93, Mismatches: 24, Indels: 19
0.68 0.18 0.14
Matches are distributed among these distances:
27 2 0.02
28 33 0.35
29 51 0.55
30 7 0.08
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (28 bp):
CACACATAGTGCCCATTGACCGATCTCG
Found at i:64808903 original size:29 final size:29
Alignment explanation
Indices: 64808865--64808967 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
64808855 GGTTGGAGAA
64808865 CTCGCACACACAGTGCCTCATTTACCGAT
1 CTCGCACACACAGTGCCTCATTTACCGAT
* * * * **
64808894 CTCGCTCACATAGTG-CTCGGTTAAGGGAAT
1 CTCGCACACACAGTGCCTC-ATTTACCG-AT
* *
64808924 -TCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCATTTACCGAT
*
64808952 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
64808968 TCGGTTAAAG
Statistics
Matches: 56, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
28 5 0.09
29 46 0.82
30 5 0.09
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.24
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCATTTACCGAT
Found at i:64808955 original size:58 final size:58
Alignment explanation
Indices: 64808831--64808983 Score: 238
Period size: 58 Copynumber: 2.7 Consensus size: 58
64808821 GTGCCCACTG
* *
64808831 ACCGATCTCGCACACATAGTGCTCGGTT--GGAGAACTCGCACACACAGTGCCTCATTT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGG-GAATTCGCACACACAGTGCCTCAATT
*
64808888 ACCGATCTCGCTCACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
* *
64808946 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTC
64808984 ATACGGTAAT
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
57 27 0.31
58 59 0.67
59 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
Found at i:64809080 original size:43 final size:43
Alignment explanation
Indices: 64809030--64809228 Score: 338
Period size: 43 Copynumber: 4.8 Consensus size: 43
64809020 CGGCATTAAG
*
64809030 CTGCTAGGCACGAAGACCCGAATACATATCACCGGCACAAAGC
1 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGC
*
64809073 CTGCTAGGCTCGAAGGCCCGAATAC-TATCACCGGCACAAAGC
1 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGC
64809115 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCAC-AA--
1 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGC
64809155 CTGCTAGGCACG-AGG-CCGAATACATATCACCGGCACAAAGC
1 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGC
64809196 CTGCTAGGCACGAAGGCCCGAATACATATCACC
1 CTGCTAGGCACGAAGGCCCGAATACATATCACC
64809229 AGCATAACTG
Statistics
Matches: 147, Mismatches: 3, Indels: 12
0.91 0.02 0.07
Matches are distributed among these distances:
38 21 0.14
39 5 0.03
40 12 0.08
41 12 0.08
42 46 0.31
43 51 0.35
ACGTcount: A:0.32, C:0.33, G:0.23, T:0.13
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGC
Found at i:64809212 original size:81 final size:82
Alignment explanation
Indices: 64809030--64809240 Score: 336
Period size: 81 Copynumber: 2.5 Consensus size: 82
64809020 CGGCATTAAG
* *
64809030 CTGCTAGGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAA
1 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCAC-AA--CTGCTAGGCACGAAGGCCCGAA
64809095 TACTATCACCGGCACAAAGC
63 TACTATCACCGGCACAAAGC
64809115 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAACTGCTAGGCACG-AGG-CCGAATAC
1 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAACTGCTAGGCACGAAGGCCCGAATAC
64809178 ATATCACCGGCACAAAGC
66 -TATCACCGGCACAAAGC
* *
64809196 CTGCTAGGCACGAAGGCCCGAATACATATCACCAGCATAACTGCT
1 CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAACTGCT
64809241 CTTCGGGACC
Statistics
Matches: 121, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
80 8 0.07
81 63 0.52
82 11 0.09
84 2 0.02
85 37 0.31
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.14
Consensus pattern (82 bp):
CTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAACTGCTAGGCACGAAGGCCCGAATAC
TATCACCGGCACAAAGC
Found at i:64809318 original size:40 final size:42
Alignment explanation
Indices: 64809211--64809384 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 42
64809201 AGGCACGAAG
* * * * *
64809211 GCCCGAATACATATCACCAGCA-TAACTGCTCTTCGGGACCTG
1 GCCCGGATATATATCACCAGCACGAA-TGCTCTTCGGGACTTA
* * * * * *
64809253 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGAGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
64809293 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
64809333 ACCTGGATATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGG--ATATATATCACCAGCACGAATGCTCTTCGGGACTTA
64809377 GCCCGGAT
1 GCCCGGAT
64809385 CATCGTCGAG
Statistics
Matches: 101, Mismatches: 24, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
40 55 0.54
41 3 0.03
42 12 0.12
43 1 0.01
44 30 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:64810565 original size:2 final size:2
Alignment explanation
Indices: 64810558--64810585 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
64810548 TTGGCTGTCT
64810558 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64810586 CCTTCGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:64811367 original size:49 final size:49
Alignment explanation
Indices: 64811240--64811505 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
64811230 CCCTTCGGGA
* *
64811240 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64811287 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64811334 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64811383 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64811432 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64811481 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
64811506 TGTACAGACT
Statistics
Matches: 207, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 49 0.24
49 157 0.76
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64812799 original size:2 final size:2
Alignment explanation
Indices: 64812764--64812790 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64812754 TAAGGCATAC
64812764 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
64812791 CCTATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64813160 original size:2 final size:2
Alignment explanation
Indices: 64813153--64813180 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
64813143 TGCCGAATAC
64813153 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64813181 CATCATCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64816791 original size:12 final size:12
Alignment explanation
Indices: 64816774--64816810 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
64816764 CCCCAAGGAA
64816774 AATCCCGAATTG
1 AATCCCGAATTG
64816786 AATCCCGAATTG
1 AATCCCGAATTG
* *
64816798 GATCCCAAATTG
1 AATCCCGAATTG
64816810 A
1 A
64816811 CGGGTTAGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (12 bp):
AATCCCGAATTG
Found at i:64818277 original size:40 final size:40
Alignment explanation
Indices: 64818198--64818357 Score: 213
Period size: 40 Copynumber: 4.0 Consensus size: 40
64818188 CGGGATTTAA
* *
64818198 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
64818237 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64818277 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
64818317 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTT-GGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
64818357 C
1 C
64818358 GGTTATCATC
Statistics
Matches: 112, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
38 1 0.01
39 18 0.16
40 80 0.71
41 9 0.08
42 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64825467 original size:229 final size:229
Alignment explanation
Indices: 64825066--64825524 Score: 873
Period size: 229 Copynumber: 2.0 Consensus size: 229
64825056 CACCTTAAAA
64825066 ATCATATCTCGAGTTCCAAAACTCAAAAACCAGTTCCGTAAATTTTTCCTGAAACCAGACTCATA
1 ATCATATCTCGAGTTCCAAAACTCAAAAACCAGTTCCGTAAATTTTTCCTGAAACCAGACTCATA
*
64825131 TGTCCTTCTACAAATAGTTTTCTAGAATTTTTGGTCGAACCAATTAGTACATTTTATTAGTTAAA
66 TGTCCATCTACAAATAGTTTTCTAGAATTTTTGGTCGAACCAATTAGTACATTTTATTAGTTAAA
64825196 GTCTCCCCTGTTTCAGGGTTCGACTACACTGACCTTTTCGCATTACAACCTGGATATCTCCCTGT
131 GTCTCCCCTGTTTCAGGGTTCGACTACACTGACCTTTTCGCATTACAACCTGGATATCTCCCTGT
*
64825261 ACAGGGCTTCAATACTGATGCCGTTTATTTCTAT
196 ACAAGGCTTCAATACTGATGCCGTTTATTTCTAT
*
64825295 ATCATATCTCGAGTTTCAAAACTCAAAAACCAGTTCCGTAAATTTTTCCTGAAACCAGACTCATA
1 ATCATATCTCGAGTTCCAAAACTCAAAAACCAGTTCCGTAAATTTTTCCTGAAACCAGACTCATA
64825360 TGTCCATCTACAAATAGTTTTCTAGAATTTTTGGTCGAACCAATTAGTACATTTTATTAGTTAAA
66 TGTCCATCTACAAATAGTTTTCTAGAATTTTTGGTCGAACCAATTAGTACATTTTATTAGTTAAA
64825425 GTCTCCCCTGTTTCAGGGTTCGACTACACTGACCTTTTCGCATTACAACCTGGATATCTCCCTGT
131 GTCTCCCCTGTTTCAGGGTTCGACTACACTGACCTTTTCGCATTACAACCTGGATATCTCCCTGT
**
64825490 ACAAGGCTTCAATACTGATGTTGTTTATTTCTAT
196 ACAAGGCTTCAATACTGATGCCGTTTATTTCTAT
64825524 A
1 A
64825525 GAAACTAGTC
Statistics
Matches: 225, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
229 225 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (229 bp):
ATCATATCTCGAGTTCCAAAACTCAAAAACCAGTTCCGTAAATTTTTCCTGAAACCAGACTCATA
TGTCCATCTACAAATAGTTTTCTAGAATTTTTGGTCGAACCAATTAGTACATTTTATTAGTTAAA
GTCTCCCCTGTTTCAGGGTTCGACTACACTGACCTTTTCGCATTACAACCTGGATATCTCCCTGT
ACAAGGCTTCAATACTGATGCCGTTTATTTCTAT
Found at i:64826603 original size:40 final size:40
Alignment explanation
Indices: 64826531--64826773 Score: 350
Period size: 40 Copynumber: 6.1 Consensus size: 40
64826521 GGGATTTAAT
* *
64826531 CGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
*
64826570 CGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
64826610 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
64826650 CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
64826690 CAGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
64826730 CGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCC
1 CGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGCC
64826771 CGG
1 CGG
64826774 TTATCATCCA
Statistics
Matches: 187, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 16 0.09
40 142 0.76
41 24 0.13
42 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:64831464 original size:14 final size:14
Alignment explanation
Indices: 64831445--64831471 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64831435 ACAACAAAAC
64831445 CCAATTTTATTGAG
1 CCAATTTTATTGAG
64831459 CCAATTTTATTGA
1 CCAATTTTATTGA
64831472 CAGAAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (14 bp):
CCAATTTTATTGAG
Found at i:64831566 original size:12 final size:12
Alignment explanation
Indices: 64831541--64831578 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
64831531 ACAAAACAAC
64831541 ATAAAAT-A-AG
1 ATAAAATAACAG
64831551 ATAAAATAACAG
1 ATAAAATAACAG
*
64831563 ATAAAATAACAT
1 ATAAAATAACAG
64831575 ATAA
1 ATAA
64831579 CATATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 7 0.28
11 1 0.04
12 17 0.68
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21
Consensus pattern (12 bp):
ATAAAATAACAG
Found at i:64838714 original size:30 final size:30
Alignment explanation
Indices: 64838692--64838780 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 30
64838682 ATTTTCTTTC
64838692 TATATTATT-ATATTATTAATA-TTATTTA
1 TATATTATTAATATTATTAATATTTATTTA
*
64838720 TATATTATTAAATATTATTAATA--TATTAA
1 TATATTATT-AATATTATTAATATTTATTTA
* *
64838749 TATATTATTAATA-TATTAAAATTTATATA
1 TATATTATTAATATTATTAATATTTATTTA
64838778 TAT
1 TAT
64838781 TTAAATTATA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
27 7 0.13
28 13 0.25
29 21 0.40
30 12 0.23
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (30 bp):
TATATTATTAATATTATTAATATTTATTTA
Found at i:64838724 original size:11 final size:10
Alignment explanation
Indices: 64838694--64838766 Score: 80
Period size: 11 Copynumber: 7.2 Consensus size: 10
64838684 TTTCTTTCTA
64838694 TATTATTATAT
1 TATTA-TATAT
64838705 TATTA-ATAT
1 TATTATATAT
64838714 TATTTATATAT
1 TA-TTATATAT
*
64838725 TATTAAATAT
1 TATTATATAT
64838735 TATTA-ATA-
1 TATTATATAT
64838743 TATTAATATAT
1 TATT-ATATAT
64838754 TATTAATATAT
1 TATT-ATATAT
64838765 TA
1 TA
64838767 AAATTTATAT
Statistics
Matches: 56, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
8 4 0.07
9 10 0.18
10 18 0.32
11 24 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TATTATATAT
Found at i:64838765 original size:8 final size:9
Alignment explanation
Indices: 64838693--64838767 Score: 84
Period size: 8 Copynumber: 8.1 Consensus size: 9
64838683 TTTTCTTTCT
64838693 ATATTATT-
1 ATATTATTA
64838701 ATATTATTA
1 ATATTATTA
64838710 ATATTATTTA
1 ATATTA-TTA
64838720 TATATTATTAA
1 -ATATTATT-A
64838731 ATATTATTA
1 ATATTATTA
64838740 ATA-TATTAA
1 ATATTATT-A
64838749 TATATTATTA
1 -ATATTATTA
64838759 ATA-TATTA
1 ATATTATTA
64838767 A
1 A
64838768 AATTTATATA
Statistics
Matches: 60, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
8 18 0.30
9 14 0.23
10 17 0.28
11 11 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
ATATTATTA
Found at i:64838791 original size:15 final size:15
Alignment explanation
Indices: 64838717--64838793 Score: 64
Period size: 19 Copynumber: 4.5 Consensus size: 15
64838707 TTAATATTAT
64838717 TTATATATTATTAAATA
1 TTATATA-TATTAAA-A
64838734 TTATTAATATATTAATATA
1 TTA-T-ATATATTAA-A-A
64838753 TTATTAATATATTAAAA
1 TTA-T-ATATATTAAAA
*
64838770 TTTATATATATTTAAA
1 -TTATATATATTAAAA
64838786 TTATATAT
1 TTATATAT
64838794 TGAAATGATA
Statistics
Matches: 55, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
15 8 0.15
16 10 0.18
17 5 0.09
18 11 0.20
19 21 0.38
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATATATATTAAAA
Found at i:64838792 original size:29 final size:29
Alignment explanation
Indices: 64838715--64838799 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 29
64838705 TATTAATATT
*
64838715 ATTTATATAT-TATTAAA-TAT-TATTAAT
1 ATTTATATATAT-TTAAATTATATATTAAA
64838742 ATATTA-ATATA-TT--ATTAATATATTAAA
1 AT-TTATATATATTTAAATT-ATATATTAAA
*
64838769 ATTTATATATATTTAAATTATATATTGAA
1 ATTTATATATATTTAAATTATATATTAAA
64838798 AT
1 AT
64838800 GATAAATAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
24 1 0.02
25 1 0.02
26 7 0.15
27 19 0.40
28 5 0.11
29 11 0.23
30 3 0.06
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (29 bp):
ATTTATATATATTTAAATTATATATTAAA
Found at i:64844310 original size:12 final size:12
Alignment explanation
Indices: 64844293--64844318 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64844283 CAAAGGCTAT
64844293 TAACAATATTTA
1 TAACAATATTTA
64844305 TAACAATATTTA
1 TAACAATATTTA
64844317 TA
1 TA
64844319 TTTATGTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:64845652 original size:21 final size:21
Alignment explanation
Indices: 64845612--64845650 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
64845602 AAATCATGGA
64845612 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
64845633 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
64845651 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:64845995 original size:13 final size:13
Alignment explanation
Indices: 64845977--64846004 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
64845967 GTTATTCATA
64845977 ATTAATATGAATT
1 ATTAATATGAATT
64845990 ATTAATATGAATT
1 ATTAATATGAATT
64846003 AT
1 AT
64846005 AGACTCGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:64846316 original size:17 final size:17
Alignment explanation
Indices: 64846294--64846332 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
64846284 CTGACTCCAT
*
64846294 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
64846311 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
64846328 TTTTA
1 TTTTA
64846333 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:64846422 original size:31 final size:31
Alignment explanation
Indices: 64846387--64846446 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
64846377 CGATCGATTT
64846387 AATAGATTTAATATAGATTAAATTTATTTTG
1 AATAGATTTAATATAGATTAAATTTATTTTG
64846418 AATAGATTTAATATAGATTAAATTTATTT
1 AATAGATTTAATATAGATTAAATTTATTT
64846447 CTATTTAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.48
Consensus pattern (31 bp):
AATAGATTTAATATAGATTAAATTTATTTTG
Found at i:64846652 original size:27 final size:28
Alignment explanation
Indices: 64846622--64846678 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
64846612 AAATGAATGG
*
64846622 AATAATTAGTTCTAGTTATTA-AATATA
1 AATAATTAGTTCTAGCTATTATAATATA
*
64846649 AATAATTAGTTCTAGCTATTATACTATA
1 AATAATTAGTTCTAGCTATTATAATATA
64846677 AA
1 AA
64846679 AAAATAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (28 bp):
AATAATTAGTTCTAGCTATTATAATATA
Found at i:64852811 original size:23 final size:23
Alignment explanation
Indices: 64852785--64852830 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
64852775 GGGATATTAG
64852785 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
64852808 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
64852831 TCAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
ATATTGACTAGTTATATACGAAC
Found at i:64861271 original size:17 final size:18
Alignment explanation
Indices: 64861230--64861272 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
64861220 TGTATTTACT
64861230 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
* *
64861248 TAATATA-AAGTAAATTA
1 TATTATATAAGTAAATAA
64861265 TATTATAT
1 TATTATAT
64861273 TATATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:64861394 original size:11 final size:11
Alignment explanation
Indices: 64861370--64861403 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
64861360 GAATAGCAGG
64861370 GAAAGAAAGAAA
1 GAAA-AAAGAAA
*
64861382 GAAAAAGGAAA
1 GAAAAAAGAAA
64861393 GAAAAAAGAAA
1 GAAAAAAGAAA
64861404 AGGAAAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
GAAAAAAGAAA
Found at i:64863274 original size:22 final size:22
Alignment explanation
Indices: 64863246--64863301 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
64863236 CGGGTTGATG
*
64863246 ACACGGGCATGTCACATCAGCC
1 ACACGGGCATGTCACACCAGCC
*
64863268 ACACGGGCGTGTCACACCAGCC
1 ACACGGGCATGTCACACCAGCC
*
64863290 AAACGGGCATGT
1 ACACGGGCATGT
64863302 GGTACTATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.27, C:0.34, G:0.27, T:0.12
Consensus pattern (22 bp):
ACACGGGCATGTCACACCAGCC
Found at i:64877643 original size:37 final size:37
Alignment explanation
Indices: 64877592--64877667 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
64877582 ATGGTCGATG
*
64877592 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
64877629 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
64877666 TT
1 TT
64877668 TGACTTTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:64880168 original size:2 final size:2
Alignment explanation
Indices: 64880161--64880186 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64880151 ATGAAAGTGC
64880161 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
64880187 CTTAAGAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64881939 original size:40 final size:40
Alignment explanation
Indices: 64881880--64882048 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
64881870 CGGGACTTTA
* * *
64881880 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
64881920 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
64881960 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
64882000 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
64882040 CCCGGATAT
1 CCCGGATAT
64882049 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:64891466 original size:60 final size:61
Alignment explanation
Indices: 64891391--64891529 Score: 160
Period size: 60 Copynumber: 2.3 Consensus size: 61
64891381 CCAATTATGT
* *
64891391 TAATAT-GGCCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTACGGCCCAGATTGATAC
1 TAATATGGGCTAAGGCCCAATATACTCTCATAC-TGTAA-AGGGCTACGGCCCAGATTAATAC
* * * * *
64891451 TAATATTGGCT-AGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATAT
1 TAATATGGGCTAAGGCCCAATATACTCTCATACTGTAAAGGGCTACGGCCCAGATTAATAC
*
64891511 TGATATGGGCTAAGGCCCA
1 TAATATGGGCTAAGGCCCA
64891530 GTTAACACTG
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
60 46 0.69
61 19 0.28
62 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (61 bp):
TAATATGGGCTAAGGCCCAATATACTCTCATACTGTAAAGGGCTACGGCCCAGATTAATAC
Found at i:64897898 original size:40 final size:39
Alignment explanation
Indices: 64897771--64897915 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 39
64897761 TGCTGGAAAT
* * * *
64897771 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
64897810 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* *
64897850 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
64897890 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
64897916 CTTGGTGCGG
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 88 0.99
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
Found at i:64918806 original size:40 final size:39
Alignment explanation
Indices: 64918679--64918808 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
64918669 ATGCTGGAAA
* *
64918679 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
64918719 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
64918759 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
64918799 TTATATCCGG
1 TTATATCCGG
64918809 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:64920403 original size:123 final size:123
Alignment explanation
Indices: 64920184--64920454 Score: 524
Period size: 123 Copynumber: 2.2 Consensus size: 123
64920174 GGGGTGTTAC
64920184 ATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAA
1 ATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAA
64920249 TTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATA
66 TTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATA
64920307 ATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAA
1 ATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAA
* *
64920372 TTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATACTCATACACACATATGTCAATA
66 TTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATA
64920430 ATCATTACACATCCATATTTCATTT
1 ATCATTACACATCCATATTTCATTT
64920455 CACATAATTC
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 146 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (123 bp):
ATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATAA
TTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATA
Found at i:64920417 original size:64 final size:64
Alignment explanation
Indices: 64920221--64920417 Score: 147
Period size: 64 Copynumber: 3.2 Consensus size: 64
64920211 GTTACTAAGG
*
64920221 CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATA
1 CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATA
* * * * * * * *** * * ** * * *
64920285 CTCATACACACATATATCAATA--ATCATTACACATCCATA-TT-TCAT---TTTCGTTACTAAG
1 CTCAAACACAAACATATCACTAGCATAATTGC-CTTCGGGACTTAGCCTGGGTACCATT-CAAAT
*
64920343 G
64 A
64920344 CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATA
1 CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATA
*
64920408 CTCATACACA
1 CTCAAACACA
64920418 CATATGTCAA
Statistics
Matches: 86, Mismatches: 38, Indels: 18
0.61 0.27 0.13
Matches are distributed among these distances:
58 4 0.05
59 21 0.24
60 4 0.05
61 9 0.10
62 10 0.12
63 4 0.05
64 30 0.35
65 4 0.05
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (64 bp):
CTCAAACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATA
Found at i:64924712 original size:29 final size:29
Alignment explanation
Indices: 64924607--64924704 Score: 117
Period size: 29 Copynumber: 3.4 Consensus size: 29
64924597 TTCACATACC
* * * *
64924607 TGTATCTGGCCCACTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
** *
64924635 TCCATATGGCCCATTAGGCCCAAATCACC
1 TGTATATGGCCCATTAGGCCCAAATCACA
64924664 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
64924693 TTTATATGGCCC
1 TGTATATGGCCC
64924705 GTTGGGCCTA
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
28 16 0.28
29 42 0.72
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:64927744 original size:49 final size:52
Alignment explanation
Indices: 64927623--64927814 Score: 187
Period size: 53 Copynumber: 3.7 Consensus size: 52
64927613 ATTACGGTTT
* * * ** *
64927623 AAGGATACCATGTAAGACCATGCCAAGCCATGGCAATTGGTAAGGTTTCTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATT-GTGA-GTTAATAAGGC
* *
64927678 AAGGATATCATGCAAGACCATGTCAAGACATGGCA-T-TGA-TCT-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGTGAGT-TAATAAGGC
* * *
64927727 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTAATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATT-GTGAGTTAATAAGGC
*
64927780 AAGGATACCATGTAAGACCATGTCGAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
64927815 ATGGTAAGTT
Statistics
Matches: 113, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
49 31 0.27
50 6 0.05
51 2 0.02
52 8 0.07
53 35 0.31
54 1 0.01
55 30 0.27
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGTGAGTTAATAAGGC
Found at i:64927844 original size:102 final size:103
Alignment explanation
Indices: 64927623--64927873 Score: 271
Period size: 102 Copynumber: 2.4 Consensus size: 103
64927613 ATTACGGTTT
** * *
64927623 AAGGATACCATGTAAGACCATGCCAAGCCATGGCAATTGGTAAGGTTTCTAAGGTAAGGATATCA
1 AAGGATACCATGTAAGACCATGCCAAGCCATGGCAATTGGTAAGGTTAATAAGGCAAGGATACCA
*
64927688 TGCAAGACCATGTCAAGACATGGCATTGATCTATAAGGCA
66 TGCAAGACCATGTCAAGACATGGCA-T-ATCGATAAGGCA
* * *
64927728 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTAATAAGGCAAGGATACCA
1 AAGGATACCATGTAAGACCATGCCAAGCCATGGCAATTGGTAAGGTTAATAAGGCAAGGATACCA
* * * *
64927790 TGTAAGACCATGTCGAGACATGGCA-AT-GGTAAGTTTCAA
66 TGCAAGACCATGTCAAGACATGGCATATCGATAAG--GC-A
* * * *
64927829 AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGCCATGGCAATTGGTAAGGT
64927874 ACCCGTGTAT
Statistics
Matches: 122, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
98 4 0.03
99 2 0.02
100 1 0.01
101 5 0.04
102 70 0.57
103 9 0.07
104 27 0.22
105 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (103 bp):
AAGGATACCATGTAAGACCATGCCAAGCCATGGCAATTGGTAAGGTTAATAAGGCAAGGATACCA
TGCAAGACCATGTCAAGACATGGCATATCGATAAGGCA
Found at i:64934602 original size:2 final size:2
Alignment explanation
Indices: 64934597--64934636 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
64934587 TTTAATTGAA
*
64934597 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64934637 GCGGATTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64936539 original size:18 final size:18
Alignment explanation
Indices: 64936506--64936551 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
64936496 TTGTGGGCTT
64936506 TGTGGG-CCACACGAGCA
1 TGTGGGCCCACACGAGCA
*
64936523 TGTGGGCCCACATGAGCA
1 TGTGGGCCCACACGAGCA
64936541 TGTGGGCCCAC
1 TGTGGGCCCAC
64936552 TGGGCCGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 6 0.22
18 21 0.78
ACGTcount: A:0.20, C:0.30, G:0.35, T:0.15
Consensus pattern (18 bp):
TGTGGGCCCACACGAGCA
Found at i:64937712 original size:25 final size:25
Alignment explanation
Indices: 64937655--64937712 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
64937645 CAGATTATAT
*
64937655 GAGCTTACTGTTATTCAACTCGGAG
1 GAGCTTACGGTTATTCAACTCGGAG
*
64937680 GGGCTTACGGTTATTCAACTCGGAG
1 GAGCTTACGGTTATTCAACTCGGAG
*
64937705 GAGTTTAC
1 GAGCTTAC
64937713 CGTTTATAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (25 bp):
GAGCTTACGGTTATTCAACTCGGAG
Found at i:64941438 original size:17 final size:18
Alignment explanation
Indices: 64941416--64941449 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64941406 TCATAGCATG
64941416 AATGTGAAATAT-TTGGA
1 AATGTGAAATATATTGGA
*
64941433 AATGTGATATATATTGG
1 AATGTGAAATATATTGG
64941450 TGAGATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (18 bp):
AATGTGAAATATATTGGA
Found at i:64943516 original size:18 final size:18
Alignment explanation
Indices: 64943489--64943529 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
64943479 CGTACATGAG
* * *
64943489 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAAAAAAAAA
64943507 AGAAAAAAAAAAAAAAAA
1 AGAAAAAAAAAAAAAAAA
64943525 AGAAA
1 AGAAA
64943530 GGAAGAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.85, C:0.05, G:0.10, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAAAAAAA
Found at i:64946315 original size:80 final size:80
Alignment explanation
Indices: 64946231--64946379 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
64946221 TATGGTAACC
* * * *
64946231 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
64946295 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64946311 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
64946376 CCGG
66 CCGG
64946380 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64946321 original size:40 final size:38
Alignment explanation
Indices: 64946272--64946379 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64946262 ATCACGATTT
*
64946272 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
64946312 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
64946352 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64946380 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:64954435 original size:80 final size:80
Alignment explanation
Indices: 64954351--64954499 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
64954341 TATGGTAACC
* * * *
64954351 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
64954415 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64954431 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
64954496 CCGG
66 CCGG
64954500 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64954441 original size:40 final size:38
Alignment explanation
Indices: 64954392--64954499 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64954382 ATCACGATTT
*
64954392 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
64954432 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
64954472 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64954500 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:64956356 original size:39 final size:40
Alignment explanation
Indices: 64956230--64956358 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
64956220 ATGCTGGAAA
* *
64956230 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGC-TAGTGA
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGG
* * * *
64956270 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
*
64956310 TTCTATCCGGGCTAAGACCCG-AGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
64956349 TTATATCCGG
1 TTATATCCGG
64956359 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 28 0.37
40 47 0.63
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
Found at i:64962988 original size:16 final size:18
Alignment explanation
Indices: 64962957--64962992 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
64962947 CGTACATGAG
64962957 AGAAACAAAAACAAAGAA
1 AGAAACAAAAACAAAGAA
64962975 AGAAA-AAAAA-AAAGAA
1 AGAAACAAAAACAAAGAA
64962991 AG
1 AG
64962993 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.81, C:0.06, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAACAAAAACAAAGAA
Found at i:64962992 original size:20 final size:20
Alignment explanation
Indices: 64962963--64963000 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64962953 TGAGAGAAAC
64962963 AAAAACAAAGAAAGAAAAAA
1 AAAAACAAAGAAAGAAAAAA
* *
64962983 AAAAAGAAAGGAAGAAAA
1 AAAAACAAAGAAAGAAAA
64963001 GTGTTCATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.82, C:0.03, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAAACAAAGAAAGAAAAAA
Found at i:64964284 original size:40 final size:40
Alignment explanation
Indices: 64964225--64964331 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
64964215 CAATTGAATG
* * * *
64964225 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
64964265 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
64964305 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
64964332 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:64964351 original size:40 final size:39
Alignment explanation
Indices: 64964266--64964392 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
64964256 CTGGAAATTA
* * *
64964266 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
64964304 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
64964346 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
64964386 TATCCGG
1 TATCCGG
64964393 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:64967418 original size:9 final size:9
Alignment explanation
Indices: 64967404--64967438 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
64967394 TTATCTAACT
64967404 AATTAATTA
1 AATTAATTA
64967413 AATTAATTA
1 AATTAATTA
*
64967422 AATTAACTA
1 AATTAATTA
64967431 AATTAATT
1 AATTAATT
64967439 TCTTAATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (9 bp):
AATTAATTA
Found at i:64968299 original size:19 final size:19
Alignment explanation
Indices: 64968271--64968309 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
64968261 AATAAACAAA
*
64968271 TAAAATCATTGAAATTTAC
1 TAAAACCATTGAAATTTAC
64968290 TAAAACCATTGAAATTTAC
1 TAAAACCATTGAAATTTAC
64968309 T
1 T
64968310 GTTGAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.13, G:0.05, T:0.36
Consensus pattern (19 bp):
TAAAACCATTGAAATTTAC
Found at i:64970395 original size:48 final size:48
Alignment explanation
Indices: 64970342--64970436 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
64970332 TCTTCACATT
64970342 TTACTAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATAG
1 TTACTAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATAG
64970390 TTACTAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATA
1 TTACTAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATA
64970437 TATACGACAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (48 bp):
TTACTAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATAG
Found at i:64970449 original size:48 final size:48
Alignment explanation
Indices: 64970342--64970449 Score: 173
Period size: 48 Copynumber: 2.2 Consensus size: 48
64970332 TCTTCACATT
*
64970342 TTACTAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATAG
1 TTACGAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATAG
*
64970390 TTACTAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATA-
1 TTACGAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATAG
*
64970437 TATACGACATCAA
1 T-TACGAAATCAA
64970450 CCACTTCACA
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
47 1 0.02
48 56 0.98
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (48 bp):
TTACGAAATCAAGCCAAACCACATGATTTATTAATCATTAATATATAG
Found at i:64972121 original size:50 final size:50
Alignment explanation
Indices: 64972001--64972144 Score: 175
Period size: 49 Copynumber: 2.9 Consensus size: 50
64971991 AGTCAAAGCT
* * * * **
64972001 ATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AATT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
64972050 ATCCGGTACACGTAGTAGCCTGCACTTAGTCCTACACACGTGACCTAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
64972100 ATCTGATACACATAGTAGCCTGCACTGAGTACTA-ACACGTGACCT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT
64972145 CACAATAGAT
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 49 0.61
50 31 0.39
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (50 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:64977193 original size:49 final size:49
Alignment explanation
Indices: 64977140--64977371 Score: 320
Period size: 49 Copynumber: 4.7 Consensus size: 49
64977130 CTAGTACGCA
*
64977140 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * ** *
64977189 TAGTAGCCTGCACTTAGTGCTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * *
64977239 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
*
64977290 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
*
64977339 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
64977372 TCACAATAGA
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 72 0.46
50 48 0.30
51 38 0.24
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:64977362 original size:100 final size:99
Alignment explanation
Indices: 64977140--64977371 Score: 331
Period size: 100 Copynumber: 2.3 Consensus size: 99
64977130 CTAGTACGCA
* * * *
64977140 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* *
64977205 GTGCTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* *
64977239 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
64977304 TAGTACTACACATGCGACC-AATTATCTGGTACACG
64 TAGTACTACACACGCGACCTAACCATCTGATACACG
64977339 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
64977372 TCACAATAGA
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.25
100 47 0.40
101 41 0.35
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:64980191 original size:43 final size:43
Alignment explanation
Indices: 64980136--64980306 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 43
64980126 AGCTCATATA
*
64980136 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
64980179 ATGCC-ACTGTCCCAAACAG-GGTCTTATACG-AATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
** * * *
64980220 ATGCTGATGTCCCAGACATGGTCTTACACATAAATCACA-ATTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCACATA-TCG
* *
64980264 AGGCCAACGTCCCAGACGTGATCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
64980307 GAATCTTATG
Statistics
Matches: 101, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
41 22 0.22
42 13 0.13
43 39 0.39
44 27 0.27
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:64984858 original size:37 final size:37
Alignment explanation
Indices: 64984799--64984907 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
64984789 AGCTCAGATG
* *
64984799 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
64984836 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
64984873 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
64984908 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:64985109 original size:48 final size:48
Alignment explanation
Indices: 64985054--64985500 Score: 671
Period size: 48 Copynumber: 9.1 Consensus size: 48
64985044 ACACATCGCC
*
64985054 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
64985102 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
64985152 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
64985200 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
64985252 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
64985304 TATATATTTCGCATTAGCCATTCGGTTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
64985352 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
64985400 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
64985448 TACATATTTCACATTAGCCATCCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
64985496 TACAT
1 TACAT
64985501 CAATTTCAGC
Statistics
Matches: 372, Mismatches: 19, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
48 234 0.63
49 2 0.01
50 43 0.12
52 93 0.25
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:64985400 original size:200 final size:193
Alignment explanation
Indices: 64985054--64985500 Score: 673
Period size: 200 Copynumber: 2.3 Consensus size: 193
64985044 ACACATCGCC
*
64985054 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
* *
64985119 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATTGACCATTCGACTTTACC
*
64985184 ACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
130 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--
64985249 ATA
193 --A
* * * * *
64985252 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCGCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACA
* *
64985317 TTAGCCATTCGGTTTTACCACATATACATATCTC-ATACATATTTCACATT-AGCCATTCGACTT
62 CTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTGA-CCATTCGACTT
64985380 TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
126 TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
64985445 TCA
191 TCA
* *
64985448 TACATATTTCACATTAGCCATCCGGCTTTACCACATATACATATCTTATACAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
64985501 CAATTTCAGC
Statistics
Matches: 227, Mismatches: 17, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
192 5 0.02
196 43 0.19
198 43 0.19
199 1 0.00
200 91 0.40
202 44 0.19
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (193 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
CCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTGACCATTCGACTTTACCA
CATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:64993778 original size:25 final size:25
Alignment explanation
Indices: 64993750--64993828 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
64993740 ACTCGGCCCT
*
64993750 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** *
64993775 ATCACAT-T-GGC-CATTCGGCATT-
1 ATCACATATATACACATTC-ACATTC
*
64993797 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
64993822 ATCACAT
1 ATCACAT
64993829 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:64993874 original size:49 final size:49
Alignment explanation
Indices: 64993700--64994060 Score: 493
Period size: 49 Copynumber: 7.3 Consensus size: 49
64993690 CCCTTCGGGA
* * * * * *
64993700 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64993747 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
64993794 ATTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
64993841 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
64993890 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGG------C
64993945 ACATATTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 -C---TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
64993998 CTTATCACATATATACACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
64994046 CTTATCACATATATA
1 CTTATCACATATATA
64994061 TATCTTACAT
Statistics
Matches: 289, Mismatches: 9, Indels: 31
0.88 0.03 0.09
Matches are distributed among these distances:
47 94 0.33
48 28 0.10
49 116 0.40
52 1 0.00
53 1 0.00
55 1 0.00
56 1 0.00
59 47 0.16
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64993961 original size:59 final size:59
Alignment explanation
Indices: 64993891--64994057 Score: 257
Period size: 59 Copynumber: 3.0 Consensus size: 59
64993881 CCATTAGGCC
64993891 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
64993950 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGG------C-C---
1 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
64993999 TTATCACATATATACACACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATA
1 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
64994057 T
1 T
64994058 ATATATCTTA
Statistics
Matches: 98, Mismatches: 0, Indels: 21
0.82 0.00 0.18
Matches are distributed among these distances:
48 9 0.09
49 37 0.38
52 1 0.01
53 1 0.01
54 1 0.01
55 1 0.01
58 1 0.01
59 47 0.48
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (59 bp):
TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
Found at i:64993964 original size:108 final size:107
Alignment explanation
Indices: 64993842--64994057 Score: 423
Period size: 108 Copynumber: 2.0 Consensus size: 107
64993832 CCATTAGGCC
64993842 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
64993907 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
66 CACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATA
64993950 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
64994015 CACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATA
66 CACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATA
64994057 T
1 T
64994058 ATATATCTTA
Statistics
Matches: 108, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
107 22 0.20
108 86 0.80
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (107 bp):
TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATA
Found at i:64997882 original size:40 final size:40
Alignment explanation
Indices: 64997833--64998144 Score: 534
Period size: 40 Copynumber: 7.8 Consensus size: 40
64997823 CCAGCATGAT
* * *
64997833 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * *
64997873 TGCTCTTCGGGACTTAGTCCGGTTGCATTACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
64997913 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
64997953 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
64997993 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
64998033 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
64998073 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
64998113 TGCTCTTCGGAACTTAGTCCGAATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
64998145 CTCAATTCTC
Statistics
Matches: 258, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 258 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:65000399 original size:49 final size:49
Alignment explanation
Indices: 65000287--65000576 Score: 453
Period size: 49 Copynumber: 6.0 Consensus size: 49
65000277 TCACATTTAT
* * * * * *
65000287 ACACTTCCACATCCATCACGTTGGCCACTCA-GCCCTATCACATATAT--
1 ACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATAC
*
65000334 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65000383 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65000432 ACAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
65000480 ACACTTTCACATTCAACACATCGGCCATTAGGCCTTATCACATATATAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
65000529 ACACTTTCACATTCATCACTTCTGCCATTAGGCCTTATCACATATATA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
65000577 TATCTCATAC
Statistics
Matches: 227, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.01
47 37 0.16
48 48 0.21
49 140 0.62
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.30
Consensus pattern (49 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:65000474 original size:97 final size:97
Alignment explanation
Indices: 65000287--65000576 Score: 449
Period size: 97 Copynumber: 3.0 Consensus size: 97
65000277 TCACATTTAT
* * * * * * *
65000287 ACACTTCCACATCCATCACGTTGGCCACTCA-GCCCTATCACATATATACAC-TTTCACATTCAT
1 ACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATACACACTTCACATTCAT
*
65000350 CACATCGGCCATTAGGCCTTATTACATATATAC
65 CACATCGGCCATTAGGCCTTATCACATATATAC
65000383 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTCACATTCATC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTCACATTCATC
65000448 ACATCGGCCATTAGGCCTTATCACATATATAC
66 ACATCGGCCATTAGGCCTTATCACATATATAC
*
65000480 ACACTTTCACATTCAACACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC-TTCACATTCAT
* *
65000545 CACTTCTGCCATTAGGCCTTATCACATATATA
65 CACATCGGCCATTAGGCCTTATCACATATATA
65000577 TATCTCATAC
Statistics
Matches: 180, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
95 2 0.01
96 42 0.23
97 95 0.53
98 41 0.23
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.30
Consensus pattern (97 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:65000556 original size:146 final size:145
Alignment explanation
Indices: 65000287--65000576 Score: 458
Period size: 146 Copynumber: 2.0 Consensus size: 145
65000277 TCACATTTAT
* * *
65000287 ACACTTCCACATCCATCACGTTGGCCACTCAGCCCTATCACATATATACACTTTCACATTCATCA
1 ACACTTCCACATCCATCACATCGGCCACTCAGCCCTATCACATATATACACTTTCACATTCAACA
*
65000352 CATCGGCCATTAGGCCTTATTACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCC
65000417 TTATCACATATATAC
131 TTATCACATATATAC
* * *
65000432 ACACTT-CACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATACACACTTTCACATTCA
1 ACACTTCCACATCCATCACATCGGCCACTCA-GCCCTATCACATATAT--ACACTTTCACATTCA
* *
65000495 ACACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACTTCTGCCATTAG
63 ACACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAG
65000560 GCCTTATCACATATATA
128 GCCTTATCACATATATA
65000577 TATCTCATAC
Statistics
Matches: 133, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
143 2 0.02
144 32 0.24
145 6 0.05
146 93 0.70
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.30
Consensus pattern (145 bp):
ACACTTCCACATCCATCACATCGGCCACTCAGCCCTATCACATATATACACTTTCACATTCAACA
CATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATATATAC
Found at i:65006058 original size:43 final size:43
Alignment explanation
Indices: 65006011--65006118 Score: 135
Period size: 45 Copynumber: 2.5 Consensus size: 43
65006001 CAAACATGGC
* * *
65006011 CTTACTCGTAACCACATATGGATGCCAACATCCCAGACGTAGT
1 CTTACACGAAACCACATATCGATGCCAACATCCCAGACGTAGT
* * *
65006054 CTTACACGAAAACACATATATCGATGCCAACATCCCAGATGTGGT
1 CTTACACG-AAAC-CACATATCGATGCCAACATCCCAGACGTAGT
*
65006099 CTTACACGAAAACACATATC
1 CTTACACGAAACCACATATC
65006119 AGAATGCTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
43 14 0.25
44 6 0.11
45 35 0.64
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (43 bp):
CTTACACGAAACCACATATCGATGCCAACATCCCAGACGTAGT
Found at i:65006088 original size:45 final size:45
Alignment explanation
Indices: 65006026--65006117 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
65006016 TCGTAACCAC
*
65006026 ATATGGATGCCAACATCCCAGACGTAGTCTTACACGAAAACACAT
1 ATATCGATGCCAACATCCCAGACGTAGTCTTACACGAAAACACAT
* *
65006071 ATATCGATGCCAACATCCCAGATGTGGTCTTACACGAAAACACAT
1 ATATCGATGCCAACATCCCAGACGTAGTCTTACACGAAAACACAT
65006116 AT
1 AT
65006118 CAGAATGCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (45 bp):
ATATCGATGCCAACATCCCAGACGTAGTCTTACACGAAAACACAT
Found at i:65008397 original size:48 final size:48
Alignment explanation
Indices: 65008339--65008840 Score: 859
Period size: 48 Copynumber: 10.5 Consensus size: 48
65008329 ATATACACAC
*
65008339 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
65008387 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
65008433 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** *
65008481 ATCTCATGTATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
65008529 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
65008577 ATCTCATGTATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** *
65008625 ATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
65008673 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
65008721 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
65008769 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCGC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
65008815 ATCTCATACATATTTCACACTAGCCA
1 ATCTCATACATATTTCACACTAGCCA
65008841 CATATCTCAT
Statistics
Matches: 433, Mismatches: 19, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 75 0.17
48 358 0.83
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:65008856 original size:29 final size:29
Alignment explanation
Indices: 65008810--65008869 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
65008800 CTTTACCGCA
65008810 CACATATCTCATACATATTTCACACTAGC
1 CACATATCTCATACATATTTCACACTAGC
** *
65008839 CACATATCTCATGTATATTTCACATTAGC
1 CACATATCTCATACATATTTCACACTAGC
65008868 CA
1 CA
65008870 TTCGGCTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (29 bp):
CACATATCTCATACATATTTCACACTAGC
Found at i:65008857 original size:75 final size:76
Alignment explanation
Indices: 65008765--65008917 Score: 236
Period size: 75 Copynumber: 2.0 Consensus size: 76
65008755 TACCACATAT
*
65008765 ACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCGC-ACACATATCTCATACATATT
1 ACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACAACACATATCTCATACATATT
65008829 TCACACTAGCC
66 TCACACTAGCC
* * * *
65008840 ACATATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACA-ACACATATCTCATACATAT
*
65008905 TTCACATTAGCC
65 TTCACACTAGCC
65008917 A
1 A
65008918 TTCGGCTTTA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
75 41 0.59
77 29 0.41
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (76 bp):
ACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACAACACATATCTCATACATATT
TCACACTAGCC
Found at i:65008896 original size:48 final size:48
Alignment explanation
Indices: 65008840--65008932 Score: 177
Period size: 48 Copynumber: 1.9 Consensus size: 48
65008830 CACACTAGCC
*
65008840 ACATATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATAT
65008888 ACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
65008933 CACATATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.37
Consensus pattern (48 bp):
ACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATAT
Found at i:65008936 original size:123 final size:123
Alignment explanation
Indices: 65008717--65008939 Score: 401
Period size: 123 Copynumber: 1.8 Consensus size: 123
65008707 TACCACATAT
65008717 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
65008782 TTCACACTAGCCATTCGGCTTTACCGCACACATATCTCATACATATTTCACACTAGCC
66 TTCACACTAGCCATTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCC
** *
65008840 ACATATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
65008905 TTCACATTAGCCATTCGGCTTTACCACACACATAT
66 TTCACACTAGCCATTCGGCTTTACCACACACATAT
65008940 ATATTTATCT
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 95 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (123 bp):
ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
TTCACACTAGCCATTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCC
Found at i:65018319 original size:40 final size:39
Alignment explanation
Indices: 65018151--65018321 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
65018141 AGAAATTGAA
* *
65018151 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
65018191 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
65018231 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
65018271 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
65018311 TGATATCCGGG
1 TGATATCCGGG
65018322 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:65029378 original size:40 final size:37
Alignment explanation
Indices: 65029285--65029430 Score: 154
Period size: 39 Copynumber: 3.9 Consensus size: 37
65029275 AAATTGAATG
* * * *
65029285 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCT--AGTT
*
65029324 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGT---T
65029364 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTG--AGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTT
* *
65029399 TTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
65029431 AAATCGTGAT
Statistics
Matches: 93, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
35 27 0.29
36 2 0.02
37 2 0.02
38 3 0.03
39 32 0.34
40 27 0.29
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (37 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTT
Found at i:65029411 original size:35 final size:36
Alignment explanation
Indices: 65029323--65029431 Score: 132
Period size: 35 Copynumber: 2.9 Consensus size: 36
65029313 ATGCTGAAAT
*
65029323 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGT-G
65029362 CTATATCCGGGCTAAGACCCGAAGGCATTCGTG-AGT-
1 -TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTG
*
65029398 TTTATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
65029432 AATCGTGATA
Statistics
Matches: 64, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
35 28 0.44
36 3 0.05
38 3 0.05
39 3 0.05
40 27 0.42
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (36 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAGTG
Found at i:65029443 original size:75 final size:80
Alignment explanation
Indices: 65029283--65029462 Score: 201
Period size: 75 Copynumber: 2.3 Consensus size: 80
65029273 AGAAATTGAA
* * * *
65029283 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAATTATATCCGGGTTAAGACCCGAAGGC
1 TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGAAATTATATCCGGGCTAAGACCCGAAGGC
* * *
65029348 AATTGTGCTAGTGGC
66 AATTGTGCAAATCGC
* *
65029363 T-ATATCCGGGCTAAGACCCGAAGGC-ATT-CG-TG-AGTTTTATCCGGGCTAAGACCCGAAGGC
1 TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGAAATTATATCCGGGCTAAGACCCGAAGGC
*
65029423 ATTTGTGCAAATCG-
66 AATTGTGCAAATCGC
* * *
65029437 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
65029463 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
74 1 0.01
75 56 0.65
76 2 0.02
77 1 0.01
78 3 0.03
79 22 0.26
80 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGAAATTATATCCGGGCTAAGACCCGAAGGC
AATTGTGCAAATCGC
Found at i:65036191 original size:2 final size:2
Alignment explanation
Indices: 65036184--65036214 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
65036174 GAGACTAGTC
65036184 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
65036215 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65037506 original size:68 final size:67
Alignment explanation
Indices: 65037394--65037548 Score: 167
Period size: 68 Copynumber: 2.3 Consensus size: 67
65037384 TGGAACCATG
* ** * * *
65037394 CATGCGACCTAGCTACATAT-A--TCCCGTAGCTCTCTTGTCTACATGGTGTACACAT-AGTATC
1 CATGTGACCTAGCTACATATAATGTCTTGTAGCTCTCTTGTCTACATGATGTACAC-TCAGCACC
*
65037455 ACC
65 ACA
*
65037458 CATGTGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTAC-ACATGATGTGCACTCAGCAC
1 CATGTGACCTAGCTACAT-ATAATGTCTTGTAGCTCTCTTGT-CTACATGATGTACACTCAGCAC
*
65037522 CATA
64 CACA
65037526 CATGTGACCTAGCTACATATAAT
1 CATGTGACCTAGCTACATATAAT
65037549 CTGTATCATC
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
64 17 0.22
65 2 0.03
66 1 0.01
67 6 0.08
68 49 0.64
69 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (67 bp):
CATGTGACCTAGCTACATATAATGTCTTGTAGCTCTCTTGTCTACATGATGTACACTCAGCACCA
CA
Found at i:65038242 original size:30 final size:30
Alignment explanation
Indices: 65038208--65038265 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
65038198 TCCTTAACTC
65038208 AAACTTTTGAAAAATTACAATTTTGCCCAT
1 AAACTTTTGAAAAATTACAATTTTGCCCAT
* * * *
65038238 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTTGAAAAATTACAATTTTGCCC
65038266 CTAGGCTCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.40
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCAT
Found at i:65044959 original size:2 final size:2
Alignment explanation
Indices: 65044952--65044978 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65044942 AATCACCTCA
65044952 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
65044979 CTTTAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65047977 original size:21 final size:20
Alignment explanation
Indices: 65047943--65047994 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
65047933 TGTTTTAAGA
*
65047943 ATTTTTTTAGTATTATTTTT
1 ATTTTTTTAATATTATTTTT
*
65047963 ATTTGTTTTAATATTTGTTTTT
1 ATTT-TTTTAATA-TTATTTTT
*
65047985 ATGTTTTTAA
1 ATTTTTTTAA
65047995 ATATATTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.15
21 13 0.48
22 10 0.37
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (20 bp):
ATTTTTTTAATATTATTTTT
Found at i:65048017 original size:26 final size:24
Alignment explanation
Indices: 65047973--65048022 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
65047963 ATTTGTTTTA
*
65047973 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
65047997 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
65048023 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:65049551 original size:29 final size:29
Alignment explanation
Indices: 65049517--65049592 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
65049507 TACTCGATTT
* * *
65049517 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
65049546 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
65049575 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
65049593 TATTTCCAGC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.25, C:0.36, G:0.18, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:65049608 original size:29 final size:29
Alignment explanation
Indices: 65049576--65049648 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
65049566 CTTCGAGCTC
65049576 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
65049605 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
65049634 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
65049649 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:65049609 original size:58 final size:59
Alignment explanation
Indices: 65049516--65049648 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
65049506 ATACTCGATT
* * *
65049516 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACCCTTCCAGCA
* * * * ***
65049574 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACCCTTCCAGCA
65049633 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
65049649 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACCCTTCCAGCA
Found at i:65051339 original size:37 final size:37
Alignment explanation
Indices: 65051289--65051369 Score: 162
Period size: 37 Copynumber: 2.2 Consensus size: 37
65051279 GGCCGGGCCG
65051289 GGCCCGGGCCTAGTAGATGGGCCTAAAATTTTATCTT
1 GGCCCGGGCCTAGTAGATGGGCCTAAAATTTTATCTT
65051326 GGCCCGGGCCTAGTAGATGGGCCTAAAATTTTATCTT
1 GGCCCGGGCCTAGTAGATGGGCCTAAAATTTTATCTT
65051363 GGCCCGG
1 GGCCCGG
65051370 CCCGGCCCGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (37 bp):
GGCCCGGGCCTAGTAGATGGGCCTAAAATTTTATCTT
Found at i:65061663 original size:44 final size:43
Alignment explanation
Indices: 65061513--65061677 Score: 142
Period size: 43 Copynumber: 3.9 Consensus size: 43
65061503 AGCTCGTACA
* * * *
65061513 ATGCCAACGTCCCAAATGTGGTCTTCCATGTAATCACATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACAAATCG
* * *
65061556 ATACC-ACTGTCCCAGACAG-GGTCTTACAC-CAAT--CAAATACG
1 ATGCCAAC-GTCCCAAAC-GTGGTCTTACACGTAATCACAAAT-CG
* ** * *
65061597 ATGCCGATATCCCAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGT-AATCACAAATCG
*
65061641 ATGCCAACGTCCCAAACGTGGTCTTACACATAATCAC
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAC
65061678 CTATAAGAAT
Statistics
Matches: 95, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
40 4 0.04
41 24 0.25
42 6 0.06
43 28 0.29
44 28 0.29
45 5 0.05
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACAAATCG
Found at i:65062448 original size:17 final size:17
Alignment explanation
Indices: 65062426--65062469 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
65062416 CATCTTCAAG
65062426 CTCTTTCTTGCTAAGAT
1 CTCTTTCTTGCTAAGAT
65062443 CTCTTTCTTGCTAAGAT
1 CTCTTTCTTGCTAAGAT
65062460 CTCTTTCTTG
1 CTCTTTCTTG
65062470 GAGGGGGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.14, C:0.25, G:0.11, T:0.50
Consensus pattern (17 bp):
CTCTTTCTTGCTAAGAT
Found at i:65067104 original size:24 final size:24
Alignment explanation
Indices: 65067069--65067117 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
65067059 GTGTCGCACA
65067069 CGGCTGAAACACACGCCTGTGTCC
1 CGGCTGAAACACACGCCTGTGTCC
65067093 CGGCT-AAGACACACGCCTGTGTCC
1 CGGCTGAA-ACACACGCCTGTGTCC
65067117 C
1 C
65067118 TACCCGTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.20, C:0.39, G:0.24, T:0.16
Consensus pattern (24 bp):
CGGCTGAAACACACGCCTGTGTCC
Found at i:65073938 original size:40 final size:41
Alignment explanation
Indices: 65073779--65073924 Score: 185
Period size: 40 Copynumber: 3.6 Consensus size: 41
65073769 TCGAATGATG
* * *
65073779 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
65073819 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65073859 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65073900 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65073925 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
39 1 0.01
40 82 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65076938 original size:39 final size:39
Alignment explanation
Indices: 65076895--65077149 Score: 397
Period size: 39 Copynumber: 6.5 Consensus size: 39
65076885 GTGTGAGATA
* * *
65076895 TATATCCGAGCTAATTCCCAAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
65076934 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
65076973 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
65077012 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
65077051 TATA-CTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATC-CGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
65077090 TATATCCGGGCTAAGTCCTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
65077128 TACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
65077150 CATGCTTTGT
Statistics
Matches: 202, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
38 22 0.11
39 172 0.85
40 8 0.04
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:65077025 original size:117 final size:116
Alignment explanation
Indices: 65076862--65077148 Score: 393
Period size: 117 Copynumber: 2.4 Consensus size: 116
65076852 AGGATTTTAA
* * * *
65076862 CCGGGCTAAGACCCGCAAGCCTT-GTG-TGAG-ATATATATCCGAGCTAATTCCCAAAGGCATTC
1 CCGGGCTAAGTCCCG-AAGGCTTCGTGCTG-GTAT-TATATCCGGGCTAAGTCCCAAAGGCATTC
65076924 GTGCTGGTGTTATA-TCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
63 GTGCTGGTGTTATACT-CGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
* *
65076978 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGC-TTCGTGCTGGTATTATATCCGGGCTAAGTCCCAAAGGCATTCGT
*
65077043 GCTGGTGTTATACTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
65 GCTGGTGTTATACTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
* * *
65077095 CCGGGCTAAGTCCTGAAGGCTTTGTGCTGGTATTACATCCGGGCTTAAAGTCCC
1 CCGGGCTAAGTCCCGAAGGCTTCGTGCTGGTATTATATCCGGGC-T-AAGTCCC
65077149 GCATGCTTTG
Statistics
Matches: 153, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
115 4 0.03
116 37 0.24
117 101 0.66
118 11 0.07
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (116 bp):
CCGGGCTAAGTCCCGAAGGCTTCGTGCTGGTATTATATCCGGGCTAAGTCCCAAAGGCATTCGTG
CTGGTGTTATACTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
Done.