Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 212 of 438
Found at i:65787717 original size:12 final size:12
Alignment explanation
Indices: 65787700--65787726 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
65787690 TGGAGTATGT
65787700 GAAAAATGAATC
1 GAAAAATGAATC
65787712 GAAAAATGAATC
1 GAAAAATGAATC
65787724 GAA
1 GAA
65787727 TTTGATGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (12 bp):
GAAAAATGAATC
Found at i:65790144 original size:27 final size:27
Alignment explanation
Indices: 65790103--65790274 Score: 229
Period size: 27 Copynumber: 6.4 Consensus size: 27
65790093 TGGATAAGTT
65790103 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
65790130 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
65790157 GTAGAATTACCGAAATA-CCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
65790183 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
65790210 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
65790237 GTAGAATTAACGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
65790264 GTAAAATTACC
1 GTAGAATTACC
65790275 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.19
27 101 0.81
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:65790237 original size:80 final size:80
Alignment explanation
Indices: 65790104--65790257 Score: 236
Period size: 80 Copynumber: 1.9 Consensus size: 80
65790094 GGATAAGTTG
* ** *
65790104 TAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTATAGGGTAGAATTACCG
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTAACG
65790169 AAATACCCTGTAGGA
66 AAATACCCTGTAGGA
* * *
65790184 TAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTAACG
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTAACG
*
65790249 AGATACCCT
66 AAATACCCT
65790258 TGTGGGGTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
TAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTAACG
AAATACCCTGTAGGA
Found at i:65790256 original size:54 final size:54
Alignment explanation
Indices: 65790103--65790270 Score: 241
Period size: 53 Copynumber: 3.1 Consensus size: 54
65790093 TGGATAAGTT
* * * *
65790103 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTATAGG
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGG
* *
65790157 GTAGAATTACCGAAATA-CCCTGTAGGATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGG
* * *
65790210 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTAACGAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGG
65790264 GTA-AAAT
1 GTAGAAAT
65790271 TACCATTTTG
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
53 52 0.50
54 52 0.50
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (54 bp):
GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGG
Found at i:65790661 original size:8 final size:8
Alignment explanation
Indices: 65790648--65790679 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
65790638 ATGGGCCGAA
65790648 AATGGGCC
1 AATGGGCC
65790656 AATGGGCC
1 AATGGGCC
65790664 AATGGGCC
1 AATGGGCC
*
65790672 AACGGGCC
1 AATGGGCC
65790680 CACTTTGGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.38, T:0.09
Consensus pattern (8 bp):
AATGGGCC
Found at i:65790978 original size:27 final size:26
Alignment explanation
Indices: 65790934--65790985 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65790924 CTCGCTGCAA
*
65790934 TCTGGTGGCCTCGCCACAAATATCTGT
1 TCTGGTGACCTCGCCAC-AATATCTGT
* *
65790961 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
65790986 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:65791025 original size:2 final size:2
Alignment explanation
Indices: 65791018--65791053 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
65791008 GTTTCACCAC
65791018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65791054 CTGTTCTGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65799095 original size:48 final size:48
Alignment explanation
Indices: 65799031--65799327 Score: 479
Period size: 48 Copynumber: 6.2 Consensus size: 48
65799021 CAAGATAAAT
* * *
65799031 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
65799079 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
65799127 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT-AG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
65799174 ATATGTATATGTGGTAAAGTCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
65799222 ATATATATATGCGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
65799270 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
65799318 ATGTGTATAT
1 ATATGTATAT
65799328 ATTGTGGCCG
Statistics
Matches: 228, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 43 0.19
48 185 0.81
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:65799221 original size:143 final size:144
Alignment explanation
Indices: 65799031--65799327 Score: 479
Period size: 143 Copynumber: 2.1 Consensus size: 144
65799021 CAAGATAAAT
* * *** * *
65799031 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGCGGTAA
65799096 AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGT
65799161 GAAATATGTAT-AG
131 GAAATATGTATGAG
*
65799174 ATATGTATATGTGGTAAAGTCGAATGGCTAACATGAAATATGTATGAGATATATATATGCGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGCGGTAA
* * *
65799239 ATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGT
65799304 GAAATATGTATGAG
131 GAAATATGTATGAG
*
65799318 ATGTGTATAT
1 ATATGTATAT
65799328 ATTGTGGCCG
Statistics
Matches: 141, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
143 130 0.92
144 11 0.08
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGCGGTAA
AGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATGTATGAG
Found at i:65799580 original size:36 final size:36
Alignment explanation
Indices: 65799459--65799602 Score: 202
Period size: 37 Copynumber: 4.0 Consensus size: 36
65799449 TGGAAATATA
*
65799459 TTCCGGGTAA-ACCTGATGACTACGTGTGGAGATTAT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATT-T
* *
65799495 GTT-CGGGTAAGACCTGATGACTATGTGTGGAGATTT
1 -TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65799531 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 T-TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
* *
65799568 TTCCGGGTAAGACCCGATAACTACGTGTGGGGATT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATT
65799603 ATTCGAGCAA
Statistics
Matches: 99, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
35 1 0.01
36 41 0.41
37 57 0.58
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (36 bp):
TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
Found at i:65799581 original size:73 final size:73
Alignment explanation
Indices: 65799460--65799602 Score: 209
Period size: 73 Copynumber: 2.0 Consensus size: 73
65799450 GGAAATATAT
* * * *
65799460 TCCGGGTAAACCTGATGACTACGTGTGGAGATTATGTTCGGGTAAGACCTGATGACTATGTGTGG
1 TCCGGGTAAACCCGATGACTACGTGTGGAGATTATGTTCGGGTAAGACCCGATAACTACGTGTGG
65799525 AGATTTTG
66 AGATTTTG
65799533 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-T-TTCCGGGTAAGACCCGATAACTACGTGT
1 TCCGGGTAA-ACCCGATGACTACGTGTGGAGATTATGTT-CGGGTAAGACCCGATAACTACGTGT
*
65799596 GGGGATT
64 GGAGATT
65799603 ATTCGAGCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
72 2 0.03
73 38 0.60
74 23 0.37
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (73 bp):
TCCGGGTAAACCCGATGACTACGTGTGGAGATTATGTTCGGGTAAGACCCGATAACTACGTGTGG
AGATTTTG
Found at i:65801362 original size:27 final size:27
Alignment explanation
Indices: 65801325--65801391 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
65801315 TCGTGCCTAG
*
65801325 CAGG-CTTCGTGCCGATGATGTGTATT
1 CAGGCCTTCGTGCCGATGATATGTATT
*
65801351 CAGGCCTTCGTGCCGGTGATATGTATT
1 CAGGCCTTCGTGCCGATGATATGTATT
*
65801378 CGGGCCTTCGTGCC
1 CAGGCCTTCGTGCC
65801392 TAGCAGGCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 4 0.11
27 33 0.89
ACGTcount: A:0.12, C:0.25, G:0.31, T:0.31
Consensus pattern (27 bp):
CAGGCCTTCGTGCCGATGATATGTATT
Found at i:65801403 original size:43 final size:43
Alignment explanation
Indices: 65801351--65801499 Score: 253
Period size: 43 Copynumber: 3.4 Consensus size: 43
65801341 GATGTGTATT
65801351 CAGGCCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAG
1 CAGG-CTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAG
65801395 CAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAG
**
65801438 CAGGCTTCGTGCCGGTGATATGTATTCGGGTGTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAG
**
65801481 CAGGCTTAATGCCGGTGAT
1 CAGGCTTCGTGCCGGTGAT
65801500 TCGAGCAAGG
Statistics
Matches: 101, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
43 97 0.96
44 4 0.04
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
CAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAG
Found at i:65801407 original size:70 final size:70
Alignment explanation
Indices: 65801294--65801434 Score: 246
Period size: 70 Copynumber: 2.0 Consensus size: 70
65801284 GCATGAAACT
* *
65801294 CGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTGTATTCAGGCCTT
1 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATATGTATTCAGGCCTT
65801359 CGTGC
66 CGTGC
* *
65801364 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCCTT
1 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATATGTATTCAGGCCTT
65801429 CGTGC
66 CGTGC
65801434 C
1 C
65801435 TAGCAGGCTT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (70 bp):
CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATATGTATTCAGGCCTT
CGTGC
Found at i:65801689 original size:29 final size:29
Alignment explanation
Indices: 65801656--65801812 Score: 85
Period size: 29 Copynumber: 5.4 Consensus size: 29
65801646 ATGATTAGAG
*
65801656 GCACTGTGTGTGCAAATTCTGTTAACCGA
1 GCACTATGTGTGCAAATTCTGTTAACCGA
* * **
65801685 GCACTATGTGTGCGAGA-TCAG-TAATTGA
1 GCACTATGTGTGC-AAATTCTGTTAACCGA
* *
65801713 GGCACTGTGTGTGCGAATTCCT-TTAACCGA
1 -GCACTATGTGTGCAAATT-CTGTTAACCGA
* * * **
65801743 GCATTATGTGTGCGAGA-T-TGGTAATTGA
1 GCACTATGTGTGC-AAATTCTGTTAACCGA
* *
65801771 GGCACTATGTGTGCGAGTT-T-TTCAACCGA
1 -GCACTATGTGTGCAAATTCTGTT-AACCGA
65801800 GCACTATGTGTGC
1 GCACTATGTGTGC
65801813 GAGATCGGTC
Statistics
Matches: 93, Mismatches: 25, Indels: 21
0.67 0.18 0.15
Matches are distributed among these distances:
27 1 0.01
28 25 0.27
29 58 0.62
30 9 0.10
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (29 bp):
GCACTATGTGTGCAAATTCTGTTAACCGA
Found at i:65801721 original size:58 final size:57
Alignment explanation
Indices: 65801653--65801818 Score: 244
Period size: 58 Copynumber: 2.9 Consensus size: 57
65801643 CGAATGATTA
*
65801653 GAGGCACTGTGTGTGCAAATTCTGTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCT-TTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* **
65801711 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCATTATGTGTGCGAGATTGGTAATT
1 GAGGCACTGTGTGTGCGAATT-CTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* *
65801769 GAGGCACTATGTGTGCGAGTT-TTTCAACCGAGCACTATGTGTGCGAGATC
1 GAGGCACTGTGTGTGCGAATTCTTT-AACCGAGCACTATGTGTGCGAGATC
65801819 GGTCAGTGGG
Statistics
Matches: 98, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 3 0.03
57 23 0.23
58 70 0.71
59 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
Found at i:65801831 original size:28 final size:28
Alignment explanation
Indices: 65801747--65801839 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 28
65801737 AACCGAGCAT
* *
65801747 TATGTGTGCGAGATTGGTAATTGAGGCAC
1 TATGTGTGCGAGATTGGTCACTG-GGCAC
** * *
65801776 TATGTGTGCGAG-TTTTTCAACCGAGCAC
1 TATGTGTGCGAGATTGGTC-ACTGGGCAC
* *
65801804 TATGTGTGCGAGATCGGTCAGTGGGCAC
1 TATGTGTGCGAGATTGGTCACTGGGCAC
*
65801832 TAAGTGTG
1 TATGTGTG
65801840 TGAAATGAGA
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.30
Consensus pattern (28 bp):
TATGTGTGCGAGATTGGTCACTGGGCAC
Found at i:65805517 original size:48 final size:48
Alignment explanation
Indices: 65805446--65805741 Score: 502
Period size: 48 Copynumber: 6.2 Consensus size: 48
65805436 CAAGATAAAT
* * *
65805446 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
65805494 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
65805542 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
65805590 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
65805638 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
65805686 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
65805734 ATGTGTAT
1 ATATGTAT
65805742 TTATTGTGGC
Statistics
Matches: 232, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 232 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:65805931 original size:37 final size:37
Alignment explanation
Indices: 65805876--65806022 Score: 222
Period size: 37 Copynumber: 4.0 Consensus size: 37
65805866 GGAAATATAT
*
65805876 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
65805913 TCCGGGTAAGACCCGATGACTATGTGTGGGGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
65805950 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
65805987 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
65806023 TCGAGCTAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:65805997 original size:74 final size:74
Alignment explanation
Indices: 65805876--65806020 Score: 263
Period size: 74 Copynumber: 2.0 Consensus size: 74
65805866 GGAAATATAT
* *
65805876 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTATGTGTG
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
65805941 GGGATTTTG
66 GGGATTTTG
*
65805950 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTGTG
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
65806015 GGGATT
66 GGGATT
65806021 ATTCGAGCTA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (74 bp):
TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
GGGATTTTG
Found at i:65808113 original size:27 final size:27
Alignment explanation
Indices: 65808071--65808275 Score: 302
Period size: 27 Copynumber: 7.6 Consensus size: 27
65808061 CAATGGGTCC
*
65808071 GTAGGGTAGAATTACCGAAATACCCCT
1 GTAGGGTAGAATTACCGAAATACCCTT
*
65808098 GTAAGGTAGAATTACCGAAATACCCTT
1 GTAGGGTAGAATTACCGAAATACCCTT
** *
65808125 GTAGGGTAGAATTATTGAAATACCCCT
1 GTAGGGTAGAATTACCGAAATACCCTT
65808152 GTAGGGTAGAATTACCGAAATACCCTT
1 GTAGGGTAGAATTACCGAAATACCCTT
* *
65808179 GTAGGGTAGAATTACTGAAATAACCTT
1 GTAGGGTAGAATTACCGAAATACCCTT
* *
65808206 GTAGGGTAGAATTATCGAAATACCCCT
1 GTAGGGTAGAATTACCGAAATACCCTT
*
65808233 GTAGGGTAGAATTACCGAGATACCCTT
1 GTAGGGTAGAATTACCGAAATACCCTT
* *
65808260 ATAGGGTAAAATTACC
1 GTAGGGTAGAATTACC
65808276 ATTTTTCCCC
Statistics
Matches: 158, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 158 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGGGTAGAATTACCGAAATACCCTT
Found at i:65808206 original size:81 final size:81
Alignment explanation
Indices: 65808071--65808275 Score: 338
Period size: 81 Copynumber: 2.5 Consensus size: 81
65808061 CAATGGGTCC
* * *
65808071 GTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
1 GTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATAACCTTGTAGGGTAGAA
*
65808136 TTATTGAAATACCCCT
66 TTATCGAAATACCCCT
*
65808152 GTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATAACCTTGTAGGGTAGAA
1 GTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATAACCTTGTAGGGTAGAA
65808217 TTATCGAAATACCCCT
66 TTATCGAAATACCCCT
* * *
65808233 GTAGGGTAGAATTACCGAGATACCCTTATAGGGTAAAATTACC
1 GTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACC
65808276 ATTTTTCCCC
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 115 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (81 bp):
GTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATAACCTTGTAGGGTAGAA
TTATCGAAATACCCCT
Found at i:65813429 original size:23 final size:23
Alignment explanation
Indices: 65813403--65813449 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
65813393 AAAAGAAAGA
65813403 TAGAAATTTTTTTACGTCTTTTT
1 TAGAAATTTTTTTACGTCTTTTT
*
65813426 TAGAAATTTTTTTACGTTTTTTT
1 TAGAAATTTTTTTACGTCTTTTT
65813449 T
1 T
65813450 TCAATTCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.06, G:0.09, T:0.64
Consensus pattern (23 bp):
TAGAAATTTTTTTACGTCTTTTT
Found at i:65819335 original size:40 final size:40
Alignment explanation
Indices: 65819291--65819378 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
65819281 TAAATAACTT
*
65819291 AAATAATAAATAAGAGAGACTTAAAGAACAATTTTTCCCA
1 AAATAATAAATAAGAGAGACTTAAAGAACAATTTTGCCCA
*
65819331 AAATAATAAATAAGAGAGACTTAAAGAGCAATTTTGCCCA
1 AAATAATAAATAAGAGAGACTTAAAGAACAATTTTGCCCA
65819371 AAATAATA
1 AAATAATA
65819379 TGGGTTGGAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.24
Consensus pattern (40 bp):
AAATAATAAATAAGAGAGACTTAAAGAACAATTTTGCCCA
Found at i:65820407 original size:53 final size:53
Alignment explanation
Indices: 65820325--65820425 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 53
65820315 CAACATGTGA
65820325 TATGTGCTTCCGTATAAGACCATAGCTGGG-CTATGGCATCAGTATGATGTAAT
1 TATGTGCTTCCGTATAAGACCATAGCTGGGAC-ATGGCATCAGTATGATGTAAT
*
65820378 TATGTG-TTCCCGTATAAGACCAT-GTCTGGGACATGGCATCAGTGTGAT
1 TATGTGCTT-CCGTATAAGACCATAG-CTGGGACATGGCATCAGTATGAT
65820426 ATGAGCTTCT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
52 3 0.07
53 40 0.91
54 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (53 bp):
TATGTGCTTCCGTATAAGACCATAGCTGGGACATGGCATCAGTATGATGTAAT
Found at i:65820461 original size:47 final size:46
Alignment explanation
Indices: 65820392--65820492 Score: 130
Period size: 47 Copynumber: 2.2 Consensus size: 46
65820382 TGTTCCCGTA
** * * *
65820392 TAAGACCATGTCTGGGACATGGCATCAGTGTGATATGAGCTTCTGTG
1 TAAGACCACATCTGGGACATGGCATCAATGTGATATGAGATCCT-TG
* *
65820439 TAAGACCACATCTGGGATATGGCATCAATGTGATATGTGATCCTTG
1 TAAGACCACATCTGGGACATGGCATCAATGTGATATGAGATCCTTG
65820485 TAAGACCA
1 TAAGACCA
65820493 TGGCTGGGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 10 0.21
47 37 0.79
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (46 bp):
TAAGACCACATCTGGGACATGGCATCAATGTGATATGAGATCCTTG
Found at i:65825467 original size:18 final size:20
Alignment explanation
Indices: 65825431--65825477 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
65825421 TTGTAAGTAT
65825431 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
65825451 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
65825470 ATGATATA
1 AT-ATATA
65825478 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:65826004 original size:50 final size:50
Alignment explanation
Indices: 65825830--65826217 Score: 366
Period size: 50 Copynumber: 7.7 Consensus size: 50
65825820 GTGAGCCACG
* * * *
65825830 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACA
* ** * * ** ** *
65825879 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAAGTCACA
* * **
65825930 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTTATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACA
* * * * * * *
65825980 TGTGTAGTACTAAATGCAGGCTACTACGTATACCGGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACA
* * * ** *
65826030 TGTGTAGTACTACGTGCAGGCTACTACGTGTACCTGTTAACTT-TGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAAG-TCACA
* * *
65826081 TGTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACA
* * * * *
65826131 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACA
* *
65826181 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
65826218 GAGCTTCGGT
Statistics
Matches: 273, Mismatches: 61, Indels: 9
0.80 0.18 0.03
Matches are distributed among these distances:
49 34 0.12
50 162 0.59
51 77 0.28
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAGTCACA
Found at i:65826034 original size:100 final size:100
Alignment explanation
Indices: 65825826--65826206 Score: 428
Period size: 101 Copynumber: 3.8 Consensus size: 100
65825816 TGTTGTGAGC
* * *
65825826 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACATGTGTAGTACT
* * * * *
65825890 AAGTGCAGGCTACTATGCATACCCG-TTAACTTCGGT
66 AAGTGCAGGCTACTACGTATACCAGATTGA--TAGGT
* * * **
65825926 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTTATGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACATGTGTAGTACT
* *
65825991 AAATGCAGGCTACTACGTATACCGGATTGATAGGT
66 AAGTGCAGGCTACTACGTATACCAGATTGATAGGT
* * * * * *
65826026 CGCATGTGTAGTACTACGTGCAGGCTACTACGTGTACCTG-TTAACTT-TGATCACATGTGTAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAAG-TCACATGTGTAGT
* * * *
65826089 ACTAAGTGCAGGCTACTACGTATATCAGATGGTTAAGT
63 ACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGT
* * * *
65826127 CACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAGGTCACATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACATGTGTAGTACT
65826192 AAGTGCAGGCTACTA
66 AAGTGCAGGCTACTA
65826207 TGCGTACCAG
Statistics
Matches: 234, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
99 1 0.00
100 113 0.48
101 115 0.49
102 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (100 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTATACCAGATTGATAGGT
Found at i:65826214 original size:151 final size:151
Alignment explanation
Indices: 65825826--65826214 Score: 618
Period size: 151 Copynumber: 2.6 Consensus size: 151
65825816 TGTTGTGAGC
65825826 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
* * *
65825890 AAGTGCAGGCTACTATGCATACCCGTTAACTTCGGTCACGTGTGTAGTACTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACT
*
65825955 ACGTGTATCAGATGGTTAAGT
131 ACGTATATCAGATGGTTAAGT
* * * * * *
65825976 TATGTGTGTAGTACTAAATGCAGGCTACTACGTATACCGGATTGATAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
* * * * *
65826041 ACGTGCAGGCTACTACGTGTACCTGTTAACTTTGATCACATGTGTAGTACTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACT
65826106 ACGTATATCAGATGGTTAAGT
131 ACGTATATCAGATGGTTAAGT
* *
65826127 CACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAGGTCACATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
65826192 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
65826215 AGAGAGCTTC
Statistics
Matches: 212, Mismatches: 26, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
150 38 0.18
151 174 0.82
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (151 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACT
ACGTATATCAGATGGTTAAGT
Found at i:65826438 original size:16 final size:16
Alignment explanation
Indices: 65826417--65826448 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
65826407 AGAATAGAGT
65826417 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
65826433 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
65826449 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:65827746 original size:45 final size:45
Alignment explanation
Indices: 65827682--65827771 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
65827672 GTGAATAAGC
*
65827682 ATGGGAGAGAATTAAGGACAACATAAGGCTTGGAAAATAGCCTAA
1 ATGGGAGAGAATTAAGGACAACATAAAGCTTGGAAAATAGCCTAA
*
65827727 ATGGGAGAGAATTAAGGACAACATAAAGCTTGGAGAATAGCCTAA
1 ATGGGAGAGAATTAAGGACAACATAAAGCTTGGAAAATAGCCTAA
65827772 GTGTTGGCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.44, C:0.11, G:0.27, T:0.18
Consensus pattern (45 bp):
ATGGGAGAGAATTAAGGACAACATAAAGCTTGGAAAATAGCCTAA
Found at i:65829175 original size:69 final size:70
Alignment explanation
Indices: 65829061--65829194 Score: 216
Period size: 69 Copynumber: 1.9 Consensus size: 70
65829051 TAGTTTATTA
* * * *
65829061 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
65829126 CTTAG
66 CTTAG
*
65829131 CTAATTAATATGCTGTTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
65829195 TTATGTGCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 37 0.63
70 22 0.37
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:65830321 original size:45 final size:45
Alignment explanation
Indices: 65830257--65830473 Score: 300
Period size: 45 Copynumber: 4.9 Consensus size: 45
65830247 TGGATTTGAT
*
65830257 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
65830302 TATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
65830347 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGATAC
1 TATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * * *
65830392 TATTTG-GGCTTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGA-
1 TATTCGAGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* *
65830437 TATT-GAGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
65830474 ATGAATTCGA
Statistics
Matches: 157, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
42 10 0.06
43 14 0.09
44 7 0.04
45 125 0.80
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
TATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:65833262 original size:42 final size:43
Alignment explanation
Indices: 65833162--65833313 Score: 119
Period size: 43 Copynumber: 3.6 Consensus size: 43
65833152 TGTCCATTAT
* *
65833162 GAACTTGGACCACTCAACGAGCTCAGATGCTCACATCTATAAT
1 GAACTTGGACCACTCAACGAGCTCAGATGCTCACATATATAAC
*** * * * *
65833205 GAACTCAAACTACTCAAGGAGCTCGGATGC-CACATATATCAC
1 GAACTTGGACCACTCAACGAGCTCAGATGCTCACATATATAAC
* * * * * *
65833247 GAACTTGGACCACTCAACAAGTTC-GAATTCTCACTTATATCAT
1 GAACTTGGACCACTCAACGAGCTCAG-ATGCTCACATATATAAC
** *
65833290 GAACTCAGACCGCTCAACGAGCTC
1 GAACTTGGACCACTCAACGAGCTC
65833314 GAATTTCTTA
Statistics
Matches: 83, Mismatches: 24, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
41 1 0.01
42 29 0.35
43 53 0.64
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (43 bp):
GAACTTGGACCACTCAACGAGCTCAGATGCTCACATATATAAC
Found at i:65836711 original size:26 final size:25
Alignment explanation
Indices: 65836665--65836717 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
65836655 TAATTTTGGG
65836665 AAAATTAATAACATTATAAAAATATA
1 AAAATTAATAACATTATAAAAAT-TA
* *
65836691 AAAATTAAATTACTTTA-AAAAATTA
1 AAAATT-AATAACATTATAAAAATTA
65836716 AA
1 AA
65836718 GTATAGAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
26 12 0.50
27 8 0.33
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (25 bp):
AAAATTAATAACATTATAAAAATTA
Found at i:65837023 original size:7 final size:7
Alignment explanation
Indices: 65837011--65837038 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
65837001 ACCATTTCAT
65837011 ATGTATA
1 ATGTATA
65837018 ATGTATA
1 ATGTATA
65837025 ATGTATA
1 ATGTATA
65837032 ATGTATA
1 ATGTATA
65837039 GTCCCTTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (7 bp):
ATGTATA
Found at i:65838261 original size:44 final size:44
Alignment explanation
Indices: 65838212--65838295 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 44
65838202 TATTATATAT
* * ** *
65838212 AAGTTGTGATAATTATATGTTTAAAAATAATTATAATTTAATAG
1 AAGTTGTAATAATTACACATTTAAAAATAACTATAATTTAATAG
65838256 AAGTTGTAATAATTACACATTTAAAAATAACTATAATTTA
1 AAGTTGTAATAATTACACATTTAAAAATAACTATAATTTA
65838296 GTTTAAAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (44 bp):
AAGTTGTAATAATTACACATTTAAAAATAACTATAATTTAATAG
Found at i:65838634 original size:29 final size:29
Alignment explanation
Indices: 65838601--65838707 Score: 81
Period size: 32 Copynumber: 3.4 Consensus size: 29
65838591 GGACTTAGAA
*
65838601 AATATAAAAATAAAATATTTGAAAATTTT
1 AATATAAAAATAAAATATTTAAAAATTTT
* * *
65838630 AATATAATTTAATAAAAATATTTAATTTCAAAATAT
1 AATATAA--AAAT-AAAATATTTAA----AAATTTT
* *
65838666 AAT-TTAAAATAAAATATTTTAAAATATTT
1 AATATAAAAATAAAATATTTAAAAAT-TTT
65838695 AATATAAAAATAA
1 AATATAAAAATAA
65838708 TTATATTATT
Statistics
Matches: 59, Mismatches: 10, Indels: 17
0.69 0.12 0.20
Matches are distributed among these distances:
28 3 0.05
29 12 0.20
30 8 0.14
31 3 0.05
32 20 0.34
33 3 0.05
35 2 0.03
36 8 0.14
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (29 bp):
AATATAAAAATAAAATATTTAAAAATTTT
Found at i:65838646 original size:31 final size:31
Alignment explanation
Indices: 65838608--65838701 Score: 95
Period size: 32 Copynumber: 2.9 Consensus size: 31
65838598 GAAAATATAA
65838608 AAATAAAATATTTGAAAATTTTAATATAATTT
1 AAATAAAATATTT-AAAATTTTAATATAATTT
*
65838640 -AATAAAAATATTT--AATTTCAAAATATAATTT
1 AAAT-AAAATATTTAAAATTT--TAATATAATTT
65838671 AAAATAAAATATTTTAAAATATTTAATATAA
1 -AAATAAAATA-TTTAAAAT-TTTAATATAA
65838702 AAATAATTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
29 5 0.10
31 13 0.25
32 15 0.29
33 6 0.12
34 7 0.14
35 3 0.06
36 2 0.04
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (31 bp):
AAATAAAATATTTAAAATTTTAATATAATTT
Found at i:65849993 original size:33 final size:31
Alignment explanation
Indices: 65849930--65849991 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
65849920 AACTTTTTTT
65849930 AAGTTAAAAACCTATTTTATATATATATATA
1 AAGTTAAAAACCTATTTTATATATATATATA
65849961 AAGTTAAAAACCTATTTTATATATATATATA
1 AAGTTAAAAACCTATTTTATATATATATATA
65849992 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (31 bp):
AAGTTAAAAACCTATTTTATATATATATATA
Found at i:65850022 original size:2 final size:2
Alignment explanation
Indices: 65849978--65850004 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65849968 AAACCTATTT
65849978 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
65850005 TAAATTAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65851839 original size:79 final size:82
Alignment explanation
Indices: 65851699--65851883 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
65851689 TCGAATGATG
* * *
65851699 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
65851763 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
65851779 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
65851841 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
65851859 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65851884 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:65851891 original size:40 final size:40
Alignment explanation
Indices: 65851700--65851891 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
65851690 CGAATGATGT
* * * * *
65851700 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
65851740 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
65851780 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
65851819 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
65851859 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
65851892 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:65851914 original size:79 final size:79
Alignment explanation
Indices: 65851699--65851916 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
65851689 TCGAATGATG
* * * * ** *
65851699 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
65851762 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
65851779 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
65851844 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
65851859 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
65851917 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:65859868 original size:79 final size:82
Alignment explanation
Indices: 65859728--65859912 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
65859718 TCGAATGATG
* * *
65859728 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
65859792 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
65859808 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
65859870 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
65859888 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65859913 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:65859920 original size:40 final size:40
Alignment explanation
Indices: 65859729--65859920 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
65859719 CGAATGATGT
* * * * *
65859729 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
65859769 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
65859809 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
65859848 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
65859888 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
65859921 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:65859943 original size:79 final size:79
Alignment explanation
Indices: 65859728--65859945 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
65859718 TCGAATGATG
* * * * ** *
65859728 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
65859791 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
65859808 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
65859873 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
65859888 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
65859946 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:65869807 original size:20 final size:20
Alignment explanation
Indices: 65869769--65869811 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
65869759 TAAATTCTAA
* **
65869769 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
65869789 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
65869809 AAA
1 AAA
65869812 ACAAAATCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:65872053 original size:4 final size:4
Alignment explanation
Indices: 65872044--65872068 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
65872034 CCATGATTTA
65872044 AATT AATT AATT AATT AATT AATT A
1 AATT AATT AATT AATT AATT AATT A
65872069 GGACTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:65875080 original size:18 final size:18
Alignment explanation
Indices: 65875043--65875080 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
65875033 GTAATAAAGC
**
65875043 ATGCATAAAAATATTGAA
1 ATGCATAAAAATATCAAA
65875061 ATGCATAAAAATATCAAA
1 ATGCATAAAAATATCAAA
65875079 AT
1 AT
65875081 AAAACTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.26
Consensus pattern (18 bp):
ATGCATAAAAATATCAAA
Found at i:65878064 original size:25 final size:25
Alignment explanation
Indices: 65878030--65878111 Score: 128
Period size: 25 Copynumber: 3.3 Consensus size: 25
65878020 TCATTAGGGT
*
65878030 TACCAATTTATAGCTTGTGAGAGCA
1 TACCGATTTATAGCTTGTGAGAGCA
*
65878055 TACCGATTTATAGCTTGTAAGAGCA
1 TACCGATTTATAGCTTGTGAGAGCA
* *
65878080 TACCGATTCATAGCTCGTGAGAGCA
1 TACCGATTTATAGCTTGTGAGAGCA
65878105 TACCGAT
1 TACCGAT
65878112 CTTCAGCTCA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (25 bp):
TACCGATTTATAGCTTGTGAGAGCA
Found at i:65878119 original size:25 final size:24
Alignment explanation
Indices: 65878040--65878120 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 24
65878030 TACCAATTTA
* *
65878040 TAGCTTGTGAGAGCATACCGATTT
1 TAGCTCGTGAGAGCATACCGATCT
* * *
65878064 ATAGCTTGTAAGAGCATACCGATTCA
1 -TAGCTCGTGAGAGCATACCGA-TCT
65878090 TAGCTCGTGAGAGCATACCGATCT
1 TAGCTCGTGAGAGCATACCGATCT
65878114 TCAGCTC
1 T-AGCTC
65878121 AAATGAGCAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.06
25 44 0.92
26 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
TAGCTCGTGAGAGCATACCGATCT
Found at i:65878128 original size:25 final size:25
Alignment explanation
Indices: 65878100--65878157 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
65878090 TAGCTCGTGA
*
65878100 GAGCATACCGATCTT-CAGCTCAAAT
1 GAGCATACCAAT-TTACAGCTCAAAT
**
65878125 GAGCATACCAATTTACAGCTCGTAT
1 GAGCATACCAATTTACAGCTCAAAT
65878150 GAGCATAC
1 GAGCATAC
65878158 ATGTACATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.07
25 27 0.93
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (25 bp):
GAGCATACCAATTTACAGCTCAAAT
Found at i:65878129 original size:50 final size:50
Alignment explanation
Indices: 65878030--65878157 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
65878020 TCATTAGGGT
* * **
65878030 TACCAATTTATAGCTTGTGAGAGCATACCGATTTATAGCTTGTAAGAGCA
1 TACCAATTTATAGCTCGTGAGAGCATACCGATTTACAGCTTCAAAGAGCA
* *
65878080 TACCGATTCATAGCTCGTGAGAGCATACCGATCTT-CAGC-TCAAATGAGCA
1 TACCAATTTATAGCTCGTGAGAGCATACCGAT-TTACAGCTTCAAA-GAGCA
*
65878130 TACCAATTTACAGCTCGT-ATGAGCATAC
1 TACCAATTTATAGCTCGTGA-GAGCATAC
65878158 ATGTACATGA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
49 4 0.06
50 60 0.91
51 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (50 bp):
TACCAATTTATAGCTCGTGAGAGCATACCGATTTACAGCTTCAAAGAGCA
Found at i:65884597 original size:123 final size:123
Alignment explanation
Indices: 65884378--65884716 Score: 579
Period size: 123 Copynumber: 2.8 Consensus size: 123
65884368 GAATTATGTG
*
65884378 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
65884443 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
65884501 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
65884566 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTTGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * * *
65884624 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCAGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
65884689 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
65884717 AATTATATCC
Statistics
Matches: 205, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 205 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:65884882 original size:40 final size:40
Alignment explanation
Indices: 65884687--65884888 Score: 233
Period size: 40 Copynumber: 5.0 Consensus size: 40
65884677 AATGATACCA
* * * * **
65884687 GGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATATCC
* * * **
65884727 GGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATATCC
* *
65884767 GGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATATCC
* *
65884807 GGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATATCC
* * **
65884847 GGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATATCC
65884887 GG
1 GG
65884889 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATATCC
Found at i:65888092 original size:38 final size:38
Alignment explanation
Indices: 65888034--65888106 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
65888024 TTTTAGTTTT
* * *
65888034 TAATTCTATTTTATTCAATTAAGTAACCCAAAATAGTG
1 TAATTCTAATTTAATAAATTAAGTAACCCAAAATAGTG
*
65888072 TAATTCTAATTTAATAAATTAAGTGACCCAAAATA
1 TAATTCTAATTTAATAAATTAAGTAACCCAAAATA
65888107 TTCAGTATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (38 bp):
TAATTCTAATTTAATAAATTAAGTAACCCAAAATAGTG
Found at i:65888498 original size:2 final size:2
Alignment explanation
Indices: 65888491--65888521 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
65888481 CTCCTCTTTT
65888491 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
65888522 CAATAGCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65889728 original size:26 final size:26
Alignment explanation
Indices: 65889699--65889763 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
65889689 ATTTTAATCT
*
65889699 AATTTAATATAAAAATATTTATATTA-
1 AATTTAAT-TAAAAATAATTATATTAG
* *
65889725 AATTATATTTAATAATAATTATATTAG
1 AATT-TAATTAAAAATAATTATATTAG
*
65889752 AATATAATTAAA
1 AATTTAATTAAA
65889764 TTATTTTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 25 0.81
27 6 0.19
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (26 bp):
AATTTAATTAAAAATAATTATATTAG
Found at i:65889758 original size:16 final size:17
Alignment explanation
Indices: 65889725--65889766 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
65889715 ATTTATATTA
*
65889725 AATTATATT-TAATAAT
1 AATTATATTAGAATAAT
65889741 AATTATATTAGAAT-AT
1 AATTATATTAGAATAAT
*
65889757 AATTAAATTA
1 AATTATATTA
65889767 TTTTTAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
AATTATATTAGAATAAT
Found at i:65889763 original size:37 final size:37
Alignment explanation
Indices: 65889721--65889827 Score: 110
Period size: 37 Copynumber: 2.9 Consensus size: 37
65889711 AAATATTTAT
*
65889721 ATTAAATTATATTTAATAATAATTATATTAGAATATA
1 ATTAAATTATATTTAATAATAATTATATTAAAATATA
* * * *
65889758 ATTAAATTATTTTTAATAATAGTTCTATTAAAATTTA
1 ATTAAATTATATTTAATAATAATTATATTAAAATATA
* * *
65889795 ATAATAATAATA-ATAATAATAATT-TATCTAAAA
1 ATTA-AATTATATTTAATAATAATTATAT-TAAAA
65889828 AATTATGCTA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
36 3 0.05
37 50 0.86
38 5 0.09
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (37 bp):
ATTAAATTATATTTAATAATAATTATATTAAAATATA
Found at i:65889801 original size:3 final size:3
Alignment explanation
Indices: 65889793--65889817 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
65889783 TATTAAAATT
65889793 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
65889818 TTATCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:65893253 original size:4 final size:4
Alignment explanation
Indices: 65893244--65893295 Score: 104
Period size: 4 Copynumber: 13.0 Consensus size: 4
65893234 TGCTATTGAG
65893244 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
65893292 ATGT
1 ATGT
65893296 GCAGATTATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:65905950 original size:14 final size:14
Alignment explanation
Indices: 65905931--65905957 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65905921 GAAATTGGTT
65905931 TAAATTTGGAAGTC
1 TAAATTTGGAAGTC
65905945 TAAATTTGGAAGT
1 TAAATTTGGAAGT
65905958 TATGATAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (14 bp):
TAAATTTGGAAGTC
Found at i:65911429 original size:23 final size:22
Alignment explanation
Indices: 65911386--65911443 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
65911376 AAAAGGTATC
* *
65911386 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
65911407 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
65911430 TGCATATCATATCT
1 TACAAATCATATCT
65911444 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:65911446 original size:19 final size:19
Alignment explanation
Indices: 65911422--65911472 Score: 88
Period size: 17 Copynumber: 2.8 Consensus size: 19
65911412 AATCATATCT
65911422 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
65911441 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
65911458 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
65911473 TGAAATTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 17 0.57
19 13 0.43
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:65911457 original size:22 final size:19
Alignment explanation
Indices: 65911413--65911460 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
65911403 AGATTACAAA
65911413 ATCATATCTTCTAAGATTG
1 ATCATATCTTCTAAGATTG
65911432 --CATATCATATCTAAGATTG
1 ATCATATC-T-TCTAAGATTG
65911451 TATCATATCT
1 -ATCATATCT
65911461 AAGATTGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 10 0.42
21 1 0.04
22 6 0.25
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (19 bp):
ATCATATCTTCTAAGATTG
Found at i:65912121 original size:41 final size:41
Alignment explanation
Indices: 65912076--65912212 Score: 100
Period size: 41 Copynumber: 3.2 Consensus size: 41
65912066 ATACAGAGAC
65912076 GCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAA
1 GCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAA
* * ** * * *
65912117 GCCAAATCAACTATGTCTTCGATCTGC-TCCCTGCCAATACA-GAG-AC
1 GCCAAAT---C-A--TCTTAGATTTGCTTCAATG-TAA-ACACGTGAAA
*
65912163 GCCAAATCATCTTAGATTTGCTTTAATGTAAACACGTGAAA
1 GCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAA
*
65912204 ACCAAATCA
1 GCCAAATCA
65912213 GCTATGTCCT
Statistics
Matches: 69, Mismatches: 16, Indels: 22
0.64 0.15 0.21
Matches are distributed among these distances:
39 3 0.04
40 14 0.20
41 19 0.28
42 1 0.01
43 1 0.01
44 1 0.01
45 1 0.01
46 12 0.17
47 14 0.20
48 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (41 bp):
GCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAA
Found at i:65912191 original size:87 final size:87
Alignment explanation
Indices: 65912045--65912692 Score: 876
Period size: 87 Copynumber: 7.4 Consensus size: 87
65912035 AGATCTGTTA
* * * *
65912045 TCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAATGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
65912110 CGTGAAAGCCAAATCAACTATG
66 CGTGAAAGCCAAATCAGCTATG
* *
65912132 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTTAATGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
65912197 CGTGAAAACCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* *
65912219 TCCTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATAATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
65912284 CGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* *
65912306 TCTTCGATCTGTTCCCTGCCAATATAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
65912371 CGTGAAAGCCAAATCAACTATG
66 CGTGAAAGCCAAATCAGCTATG
*
65912393 TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATCA-CTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
65912457 CGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* * * * ** *
65912479 TCCTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTACTGTCTTTGATATGCTCTCTGC-C
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC-A---TCTTAGATTTGCT-TCAACGT
* * * *
65912543 AATACA-GAGATA-CCAAATCTG-T-TA
61 AA-ACACGTGAAAGCCAAATCAGCTATG
* * * * * * *
65912567 TCTTCAATTTGCTCTCTGACAATACAGAGACGCCAAATCATCTTGGGTTTGCTTCAACATAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
65912632 CGTGAAAGCCAAATCAGTTATG
66 CGTGAAAGCCAAATCAGCTATG
* * *
65912654 TCTTTGATCTGCTCCTTGCCAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
65912693 TATTATCTTC
Statistics
Matches: 494, Mismatches: 55, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
83 6 0.01
84 16 0.03
85 8 0.02
86 82 0.17
87 317 0.64
88 34 0.07
89 1 0.00
90 8 0.02
91 16 0.03
92 6 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (87 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
CGTGAAAGCCAAATCAGCTATG
Found at i:65912542 original size:44 final size:43
Alignment explanation
Indices: 65912482--65912736 Score: 180
Period size: 44 Copynumber: 5.8 Consensus size: 43
65912472 AGCTATGTCC
* * *
65912482 TCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTACTGTCT
1 TCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTA-TATCT
* * * * *
65912526 TTGATATGCTCTCTGCCAATACAGAGATACCAAATCTGTTATCT
1 TCGATCTGCTCTCTGACAATACAGAGATGCCAAATCT-ATATCT
* * *
65912570 TCAATTTGCTCTCTGACAATACAGAGACGCCAAATC---ATCT
1 TCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTATATCT
* * * * * * * *
65912610 TGGGTTTGCT-TC-AACATAAACACGTGAAAGCCAAATCAGTTATGTCT
1 TCGATCTGCTCTCTGACA-ATACA-GAG-ATGCCAAATC---TATATCT
* *
65912657 TTGATCTGCTC-CTTGCCAATACAGAGATGCCAAATCTATTATCT
1 TCGATCTGCTCTC-TGACAATACAGAGATGCCAAATCTA-TATCT
*
65912701 TCGATCTGCTCTCTGACAATATAGAGATGCCAAATC
1 TCGATCTGCTCTCTGACAATACAGAGATGCCAAATC
65912737 ATCTTGGATC
Statistics
Matches: 164, Mismatches: 32, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
38 3 0.02
39 6 0.04
40 13 0.08
41 9 0.05
43 2 0.01
44 102 0.62
45 1 0.01
46 9 0.05
47 13 0.08
48 4 0.02
49 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (43 bp):
TCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTATATCT
Found at i:65912761 original size:131 final size:131
Alignment explanation
Indices: 65912521--65912768 Score: 363
Period size: 131 Copynumber: 1.9 Consensus size: 131
65912511 CCAAATCTAC
* *
65912521 TGTCTTTGATATGCTCTCTGCCAATACAGAGATACCAAATCTGTTATCTTCAATTTGCTCTCTGA
1 TGTCTTTGATATGCTCTCTGCCAATACAGAGATACCAAATCTATTATCTTCAATCTGCTCTCTGA
* * *
65912586 CAATACAGAGACGCCAAATCATCTTGGGTTTGCTTCAACATAAACACGTGAAAGCCAAATCAGTT
66 CAATACAGAGACGCCAAATCATCTTGGATCTGCTTCAACATAAACACCTGAAAGCCAAATCAGTT
65912651 A
131 A
* * *
65912652 TGTCTTTGATCTGCTC-CTTGCCAATACAGAGATGCCAAATCTATTATCTTCGATCTGCTCTCTG
1 TGTCTTTGATATGCTCTC-TGCCAATACAGAGATACCAAATCTATTATCTTCAATCTGCTCTCTG
* * ***
65912716 ACAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAA
65 ACAATACAGAGACGCCAAATCATCTTGGATCTGCTTCAACATAAACACCTGAA
65912769 GGTTAGATCT
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
130 1 0.01
131 102 0.99
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (131 bp):
TGTCTTTGATATGCTCTCTGCCAATACAGAGATACCAAATCTATTATCTTCAATCTGCTCTCTGA
CAATACAGAGACGCCAAATCATCTTGGATCTGCTTCAACATAAACACCTGAAAGCCAAATCAGTT
A
Found at i:65912830 original size:41 final size:41
Alignment explanation
Indices: 65912785--65912864 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
65912775 ATCTGCTATA
*
65912785 CTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAT
1 CTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCAT
65912826 CTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
1 CTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC
65912865 TGAATTTTGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (41 bp):
CTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCAT
Found at i:65913824 original size:7 final size:7
Alignment explanation
Indices: 65913812--65913873 Score: 65
Period size: 7 Copynumber: 8.9 Consensus size: 7
65913802 GGCCTCTCCA
65913812 TTTTTTC
1 TTTTTTC
65913819 TTTTTTC
1 TTTTTTC
65913826 TTTTTTC
1 TTTTTTC
65913833 TCTTTTT-
1 T-TTTTTC
*
65913840 TCTTTTTA
1 T-TTTTTC
65913848 TTTTTTC
1 TTTTTTC
*
65913855 TTTTAT-
1 TTTTTTC
*
65913861 TTTTTCC
1 TTTTTTC
65913868 TTTTTT
1 TTTTTT
65913874 TTTGAAATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
6 4 0.09
7 37 0.79
8 6 0.13
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTC
Found at i:65913853 original size:13 final size:13
Alignment explanation
Indices: 65913835--65913876 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
65913825 CTTTTTTCTC
65913835 TTTTTTCTTTTTA
1 TTTTTTCTTTTTA
65913848 TTTTTTC-TTTTA
1 TTTTTTCTTTTTA
65913860 TTTTTTCCTTTTT-
1 TTTTTT-CTTTTTA
65913873 TTTT
1 TTTT
65913877 GAAATAGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 11 0.41
13 12 0.44
14 4 0.15
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTTCTTTTTA
Found at i:65913863 original size:23 final size:23
Alignment explanation
Indices: 65913812--65913855 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
65913802 GGCCTCTCCA
*
65913812 TTTTTTCTTTTTTCTTTTTTCTC
1 TTTTTTCTTTTTTATTTTTTCTC
65913835 TTTTTTC-TTTTTATTTTTTCT
1 TTTTTTCTTTTTTATTTTTTCT
65913856 TTTATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (23 bp):
TTTTTTCTTTTTTATTTTTTCTC
Found at i:65918660 original size:15 final size:15
Alignment explanation
Indices: 65918640--65918691 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
65918630 TTCTGTATTG
65918640 CTATTGTTCTAAGAA
1 CTATTGTTCTAAGAA
* *
65918655 CTATTGTT-T-TGTAT
1 CTATTGTTCTAAG-AA
*
65918669 GTATTGTTCTAAGAA
1 CTATTGTTCTAAGAA
65918684 CTATTGTT
1 CTATTGTT
65918692 TTGTATGTCA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
13 1 0.04
14 9 0.32
15 17 0.61
16 1 0.04
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (15 bp):
CTATTGTTCTAAGAA
Found at i:65918677 original size:29 final size:29
Alignment explanation
Indices: 65918641--65918699 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
65918631 TCTGTATTGC
65918641 TATTGTTCTAAGAACTATTGTTTTGTATG
1 TATTGTTCTAAGAACTATTGTTTTGTATG
65918670 TATTGTTCTAAGAACTATTGTTTTGTATG
1 TATTGTTCTAAGAACTATTGTTTTGTATG
65918699 T
1 T
65918700 CAAGTCTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.07, G:0.17, T:0.53
Consensus pattern (29 bp):
TATTGTTCTAAGAACTATTGTTTTGTATG
Found at i:65921517 original size:16 final size:13
Alignment explanation
Indices: 65921470--65921520 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 13
65921460 TAATTAGTAG
*
65921470 TATATAATA-AAA
1 TATATAATATGAA
65921482 TATATAATATGAA
1 TATATAATATGAA
65921495 TAGTATAATATTTAGAA
1 TA-TATAATA--T-GAA
65921512 TATATAATA
1 TATATAATA
65921521 ATATAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 9 0.27
13 4 0.12
14 7 0.21
16 8 0.24
17 5 0.15
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (13 bp):
TATATAATATGAA
Found at i:65921525 original size:24 final size:24
Alignment explanation
Indices: 65921444--65921550 Score: 70
Period size: 24 Copynumber: 4.7 Consensus size: 24
65921434 AAATAAAAAC
*
65921444 ATATAATAACATAATATAATTAGT-A
1 ATATAATAATATAATAT-A-TAGTAA
*
65921469 GTAT-ATAATA-AA-ATATA-T-A
1 ATATAATAATATAATATATAGTAA
* *
65921488 ATATGAATAGTATAATATTTAG-AA
1 ATAT-AATAATATAATATATAGTAA
*
65921512 TATATAATAATATAAAATATAGTAA
1 -ATATAATAATATAATATATAGTAA
65921537 ATA-AAT-ATATAATA
1 ATATAATAATATAATA
65921551 AAAAAATAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 19
0.70 0.10 0.20
Matches are distributed among these distances:
19 5 0.08
20 2 0.03
21 6 0.09
22 11 0.17
23 9 0.14
24 23 0.35
25 9 0.14
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATAATAATATAATATATAGTAA
Found at i:65921546 original size:15 final size:15
Alignment explanation
Indices: 65921479--65921565 Score: 72
Period size: 15 Copynumber: 5.8 Consensus size: 15
65921469 GTATATAATA
65921479 AAATATATAAT--AT
1 AAATATATAATAAAT
* **
65921492 GAATAGTATAATATTT
1 AAATA-TATAATAAAT
65921508 AGAATATATAATAATAT
1 A-AATATATAATAA-AT
*
65921525 AAA-ATATAGTAAAT
1 AAATATATAATAAAT
*
65921539 AAATATATAATAAAA
1 AAATATATAATAAAT
*
65921554 AAATAAATAATA
1 AAATATATAATA
65921566 TATACATAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
13 4 0.07
14 11 0.19
15 28 0.47
16 10 0.17
17 6 0.10
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (15 bp):
AAATATATAATAAAT
Found at i:65921565 original size:26 final size:30
Alignment explanation
Indices: 65921475--65921580 Score: 82
Period size: 30 Copynumber: 3.7 Consensus size: 30
65921465 AGTAGTATAT
*
65921475 AATAAA-ATAT-ATAATATGAATAGTATAATA
1 AATAAATATATAATAATAT-AA-AATATAATA
** *
65921505 TTTAGAATATATAATAATATAAAATATAGTA
1 AATA-AATATATAATAATATAAAATATAATA
65921536 AATAAATATATAATAA-A-AAAATA-AAT-
1 AATAAATATATAATAATATAAAATATAATA
* *
65921562 AATATATACATAA-AATATA
1 AATAAATATATAATAATATA
65921581 TTAGATGATA
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
25 2 0.03
26 12 0.19
27 3 0.05
28 6 0.10
29 1 0.02
30 14 0.23
31 11 0.18
32 6 0.10
33 7 0.11
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (30 bp):
AATAAATATATAATAATATAAAATATAATA
Found at i:65922814 original size:48 final size:48
Alignment explanation
Indices: 65922745--65922855 Score: 181
Period size: 48 Copynumber: 2.4 Consensus size: 48
65922735 TTGTTTGGGT
*
65922745 TTGGG-TGTAA-CGGATTAATAGATTTTGGGCCAAAGGTTTAAGCTAA
1 TTGGGTTGTAACCGGGTTAATAGATTTTGGGCCAAAGGTTTAAGCTAA
* *
65922791 TTGGGTTGTAACCGGGTTAATAGATTTTGGGCTAAAGGTTTAGGCTAA
1 TTGGGTTGTAACCGGGTTAATAGATTTTGGGCCAAAGGTTTAAGCTAA
65922839 TTGGGTTGTAACCGGGT
1 TTGGGTTGTAACCGGGT
65922856 GCTGGGTTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
46 5 0.08
47 5 0.08
48 50 0.83
ACGTcount: A:0.25, C:0.09, G:0.32, T:0.34
Consensus pattern (48 bp):
TTGGGTTGTAACCGGGTTAATAGATTTTGGGCCAAAGGTTTAAGCTAA
Found at i:65923694 original size:289 final size:291
Alignment explanation
Indices: 65923190--65923714 Score: 822
Period size: 289 Copynumber: 1.8 Consensus size: 291
65923180 GTTCCCTGAC
* * * ** * *
65923190 CATACAGAGATGCCAAATCATCCTGGATTTACTTCAGTATAATCATCTGAAGGTTATATTTGCTA
1 CATACAGAGATGCCAAATCATCCTGGATCTACTTCAGCATAAACATCTGAAGGCCAGATATGCTA
* * *
65923255 TGTGTCTGCCCTTCATCGAATATGTAGACGCCAAACTTTGATTTGTTCTCTAACAATACAGAGAT
66 TGTGTCTGCCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGAT
*
65923320 GCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAACTATGGTTTCAATT
131 GCCAAATCATCTTAGACTTGCTTCAACGTAAACACGCGAAAGCCAAATCAACTATGGTTTCAATT
*
65923385 TGTTCCTAGTAAACACAAGGATACCAAATCATCTTGGATCTGTTTGAGAACATCTGAGAGTCAAA
196 TGTTCCTAGTAAACACAAGGATACCAAACCATCTTGGATCTGTTTGAGAACATCTGAGAGTCAAA
65923450 TCTGCTATGTTCTCGATTTGTTCCTTGTAAA
261 TCTGCTATGTTCTCGATTTGTTCCTTGTAAA
* *
65923481 CATA-AGA-ATGCCAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGCCAGATATGCTA
1 CATACAGAGATGCCAAATCATCCTGGATCTACTTCAGCATAAACATCTGAAGGCCAGATATGCTA
* *
65923544 TGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATATAGAGAT
66 TGTGTCTGCCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGAT
* * *
65923609 GCCAAATCATCTTAGACTTGCTTCAATGTAAACACGCGAAAGCCAAATCAGCTAT-GTCTTCGAT
131 GCCAAATCATCTTAGACTTGCTTCAACGTAAACACGCGAAAGCCAAATCAACTATGGT-TTCAAT
* * *
65923673 TTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
195 TTGTTCCTAGTAAACACAAGGATACCAAACCATCTTGGATCT
65923715 TGCTTCAGTA
Statistics
Matches: 211, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
288 2 0.01
289 202 0.96
290 3 0.01
291 4 0.02
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (291 bp):
CATACAGAGATGCCAAATCATCCTGGATCTACTTCAGCATAAACATCTGAAGGCCAGATATGCTA
TGTGTCTGCCCTCCATCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGAT
GCCAAATCATCTTAGACTTGCTTCAACGTAAACACGCGAAAGCCAAATCAACTATGGTTTCAATT
TGTTCCTAGTAAACACAAGGATACCAAACCATCTTGGATCTGTTTGAGAACATCTGAGAGTCAAA
TCTGCTATGTTCTCGATTTGTTCCTTGTAAA
Found at i:65923761 original size:207 final size:205
Alignment explanation
Indices: 65923446--65923919 Score: 777
Period size: 207 Copynumber: 2.3 Consensus size: 205
65923436 ATCTGAGAGT
* * *
65923446 CAAATCTGCTATGTTCTCGATTTGTTCCTTGTAAACATAAGAATGCCAAATCATCTTGGATCTGC
1 CAAATCAGCTATGTT-TCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGC
65923511 TTCAGCATAAACATCTGAAGGCCAGATATGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCC
65 TTCAGCATAAACATCTGAAGGCCAGATATGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCC
* *
65923576 AAACTTCGATTTGTTCTCTAACAATATAGAGATGCCAAATCATCTTAGACTTGCTTCAATGTAAA
130 AAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAA
65923641 CACGCGAAAGC
195 CACGCGAAAGC
* *
65923652 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTG
1 CAAATCAGCTATGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATC-TG
* * *
65923717 CTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTTGAATATGGAGACGC
64 CTTCAGCATAAACATCTGAAGGCCAGATATGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGC
* *
65923782 CAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAACGTAA
129 CAAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAA
*
65923847 ACACGTGAAAGC
194 ACACGCGAAAGC
* *
65923859 CAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAACACAAGGATACTAAATCATCTTGGAT
1 CAAATCAGCTAT-GTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGAT
65923920 TTGTTTGAGA
Statistics
Matches: 248, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
206 55 0.22
207 191 0.77
208 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (205 bp):
CAAATCAGCTATGTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCT
TCAGCATAAACATCTGAAGGCCAGATATGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCA
AACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAAC
ACGCGAAAGC
Found at i:65936212 original size:27 final size:26
Alignment explanation
Indices: 65936159--65936269 Score: 89
Period size: 30 Copynumber: 3.9 Consensus size: 26
65936149 AAATAAAAAC
*
65936159 ATATAATAACATAATATAAT-TAGTAGT
1 ATATAATAA-AT-ATATAATATAATAGT
65936186 ATATAATAAATATATAATATGAATAGT
1 ATATAATAAATATATAATAT-AATAGT
* * *
65936213 ATAATATTTAGAATATATAATAATATAAAAT
1 AT-ATA-ATA-AATATATAAT-ATA-ATAGT
65936244 ATAGTAAATAAATATATAATATAATA
1 ATA-T-AATAAATATATAATATAATA
65936270 CAAAATAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
25 7 0.10
26 3 0.04
27 16 0.23
28 5 0.07
29 5 0.07
30 22 0.32
31 10 0.14
32 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.37
Consensus pattern (26 bp):
ATATAATAAATATATAATATAATAGT
Found at i:65936231 original size:16 final size:13
Alignment explanation
Indices: 65936185--65936234 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 13
65936175 TAATTAGTAG
65936185 TATATAATA--AA
1 TATATAATATGAA
65936196 TATATAATATGAA
1 TATATAATATGAA
65936209 TAGTATAATATTTAGAA
1 TA-TATAATA--T-GAA
65936226 TATATAATA
1 TATATAATA
65936235 ATATAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
11 9 0.27
13 4 0.12
14 7 0.21
16 8 0.24
17 5 0.15
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (13 bp):
TATATAATATGAA
Found at i:65936260 original size:15 final size:16
Alignment explanation
Indices: 65936185--65936285 Score: 68
Period size: 17 Copynumber: 6.2 Consensus size: 16
65936175 TAATTAGTAG
*
65936185 TATATAATAAATATATAA
1 TATA-AATATATA-ATAA
*
65936203 TATGAATAGTATAAT-A
1 TATAAATA-TATAATAA
*
65936219 TTTAGAATATATAATAA
1 TATA-AATATATAATAA
*
65936236 TATAAA-ATATAGTAA
1 TATAAATATATAATAA
65936251 -ATAAATATATAAT-A
1 TATAAATATATAATAA
*
65936265 TAATACAAAATA-AATAA
1 T-ATA-AATATATAATAA
65936282 TATA
1 TATA
65936286 TACATAAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
14 6 0.09
15 14 0.21
16 20 0.30
17 21 0.31
18 6 0.09
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (16 bp):
TATAAATATATAATAA
Found at i:65936260 original size:22 final size:24
Alignment explanation
Indices: 65936231--65936285 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
65936221 TAGAATATAT
**
65936231 AATAATATAAAAT-ATAGTAAATA
1 AATAATATAAAATAATACAAAATA
*
65936254 AAT-ATATAATATAATACAAAATA
1 AATAATATAAAATAATACAAAATA
65936277 AATAATATA
1 AATAATATA
65936286 TACATAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.30
23 14 0.52
24 5 0.19
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (24 bp):
AATAATATAAAATAATACAAAATA
Found at i:65936281 original size:19 final size:18
Alignment explanation
Indices: 65936253--65936289 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
65936243 TATAGTAAAT
*
65936253 AAATATATAATATAATACA
1 AAATAAATAATAT-ATACA
65936272 AAATAAATAATATATACA
1 AAATAAATAATATATACA
65936290 TAAAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATAAATAATATATACA
Found at i:65937450 original size:16 final size:16
Alignment explanation
Indices: 65937429--65937462 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
65937419 TGTTTAGGCA
65937429 TTGGGCCTCGTTTAGG
1 TTGGGCCTCGTTTAGG
* *
65937445 TTGGGCCTTGTTTGGG
1 TTGGGCCTCGTTTAGG
65937461 TT
1 TT
65937463 TGGGTGTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.15, G:0.38, T:0.44
Consensus pattern (16 bp):
TTGGGCCTCGTTTAGG
Found at i:65937526 original size:48 final size:48
Alignment explanation
Indices: 65937462--65937572 Score: 190
Period size: 48 Copynumber: 2.4 Consensus size: 48
65937452 TTGTTTGGGT
65937462 TTGGG-TGTAA-CGGGTTAATAGATTTTGGGCCAAAGGTTTAAGCTAA
1 TTGGGTTGTAACCGGGTTAATAGATTTTGGGCCAAAGGTTTAAGCTAA
* *
65937508 TTGGGTTGTAACCGGGTTAATAGATTTTGGGCTAAAGGTTTAGGCTAA
1 TTGGGTTGTAACCGGGTTAATAGATTTTGGGCCAAAGGTTTAAGCTAA
65937556 TTGGGTTGTAACCGGGT
1 TTGGGTTGTAACCGGGT
65937573 GCTGGGTTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
46 5 0.08
47 5 0.08
48 51 0.84
ACGTcount: A:0.24, C:0.09, G:0.32, T:0.34
Consensus pattern (48 bp):
TTGGGTTGTAACCGGGTTAATAGATTTTGGGCCAAAGGTTTAAGCTAA
Found at i:65938689 original size:27 final size:27
Alignment explanation
Indices: 65938642--65938745 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 27
65938632 CGAGGCTGCT
*
65938642 AGATATTGTGAC-GAAGTCACCAGATAC
1 AGATATTGTGACAG-AGCCACCAGATAC
*
65938669 AGATATTGTGGCAGAGCCACCAGA-AC
1 AGATATTGTGACAGAGCCACCAGATAC
65938695 AGATATATGTGACAGAGCCACCAGAT-C
1 AGATAT-TGTGACAGAGCCACCAGATAC
* *
65938722 AGATAATTGTGGCATAGCCACCAG
1 AGAT-ATTGTGACAGAGCCACCAG
65938746 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.12
27 57 0.84
28 3 0.04
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
AGATATTGTGACAGAGCCACCAGATAC
Found at i:65938731 original size:54 final size:53
Alignment explanation
Indices: 65938642--65938745 Score: 149
Period size: 54 Copynumber: 1.9 Consensus size: 53
65938632 CGAGGCTGCT
*
65938642 AGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGATACAGATATTGTGGCAGAGCCACCAGAAC
*
65938695 AGATATATGTGAC-AGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAG
1 AGATAT-TGTGACGA-AGCCACCAGATACAGAT-ATTGTGGCAGAGCCACCAG
65938746 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
53 12 0.26
54 34 0.74
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (53 bp):
AGATATTGTGACGAAGCCACCAGATACAGATATTGTGGCAGAGCCACCAGAAC
Found at i:65938877 original size:26 final size:27
Alignment explanation
Indices: 65938848--65938923 Score: 100
Period size: 26 Copynumber: 2.8 Consensus size: 27
65938838 CAAAATTAAC
* *
65938848 CCTAGGGGTATAACGGTAATTTTGC-A
1 CCTAGGGGTATAACAGTAATTTTCCAA
65938874 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAACAGTAATTTTCCA-A
* *
65938902 CATAGGGGTATTACAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
65938924 AGCTACTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 23 0.52
28 21 0.48
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.33
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTCCAA
Found at i:65939176 original size:29 final size:30
Alignment explanation
Indices: 65939128--65939186 Score: 111
Period size: 29 Copynumber: 2.0 Consensus size: 30
65939118 CGTCATTTGT
65939128 AGCTGAAAATTATATAGCACTAAGTGTGCG
1 AGCTGAAAATTATATAGCACTAAGTGTGCG
65939158 AGCTGAAAA-TATATAGCACTAAGTGTGCG
1 AGCTGAAAATTATATAGCACTAAGTGTGCG
65939187 GATTCACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 20 0.69
30 9 0.31
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (30 bp):
AGCTGAAAATTATATAGCACTAAGTGTGCG
Found at i:65942015 original size:26 final size:26
Alignment explanation
Indices: 65941985--65942040 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
65941975 TGAAATTCCC
65941985 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
65942011 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
65942037 ATCA
1 ATCA
65942041 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:65944285 original size:40 final size:40
Alignment explanation
Indices: 65944230--65944335 Score: 115
Period size: 40 Copynumber: 2.6 Consensus size: 40
65944220 TACGAATTGT
* * *
65944230 TACACCGGCCTGAAGCTTTCTAGGCACTGAGCCCGATA-A
1 TACACTGGCATGAAGCTTACTAGGCACTGAGCCCGATAGA
* * *
65944269 GTACACTGGCATGAAGCTTACTAGGTATTTAGCCCGATAGA
1 -TACACTGGCATGAAGCTTACTAGGCACTGAGCCCGATAGA
* * *
65944310 TACACTAGCACGAAGCTTGCTAGGCA
1 TACACTGGCATGAAGCTTACTAGGCA
65944336 ACAAGGCCCC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 54 0.98
41 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (40 bp):
TACACTGGCATGAAGCTTACTAGGCACTGAGCCCGATAGA
Found at i:65948357 original size:22 final size:23
Alignment explanation
Indices: 65948332--65948387 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
65948322 AAATTATTGT
65948332 TTATAAAATA-TAAAA-TTACTTA
1 TTATAAAATATTAAAATTTAC-TA
65948354 TTATATAAATAATTAAAATTTACTA
1 TTATA-AAAT-ATTAAAATTTACTA
65948379 TT-TAAAATA
1 TTATAAAATA
65948388 AAAGTAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
22 6 0.20
23 8 0.27
24 3 0.10
25 9 0.30
26 4 0.13
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TTATAAAATATTAAAATTTACTA
Found at i:65948372 original size:25 final size:23
Alignment explanation
Indices: 65948335--65948388 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
65948325 TTATTGTTTA
65948335 TAAAAT-A-TAAAA-TTACTTATT
1 TAAAATAATTAAAATTTAC-TATT
65948356 ATATAAATAATTAAAATTTACTATT
1 -TA-AAATAATTAAAATTTACTATT
65948381 TAAAATAA
1 TAAAATAA
65948389 AAGTAATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
22 2 0.07
23 10 0.36
24 3 0.11
25 9 0.32
26 4 0.14
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (23 bp):
TAAAATAATTAAAATTTACTATT
Found at i:65959463 original size:23 final size:24
Alignment explanation
Indices: 65959436--65959480 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
65959426 TTGATCAATT
65959436 TATTG-TTGTATTCAT-TGATGACA
1 TATTGATT-TATTCATGTGATGACA
65959459 TATTGATTTATTCATGTGATGA
1 TATTGATTTATTCATGTGATGA
65959481 ATCTGAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.27, C:0.07, G:0.18, T:0.49
Consensus pattern (24 bp):
TATTGATTTATTCATGTGATGACA
Found at i:65976141 original size:22 final size:21
Alignment explanation
Indices: 65976115--65976155 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
65976105 GTTGAAATGT
65976115 CACACGAGTGTGTTGCCCCTTC
1 CACACGAGTGTG-TGCCCCTTC
*
65976137 CACACGGGTGTGTGCCCCT
1 CACACGAGTGTGTGCCCCT
65976156 GTGTTAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.37, G:0.27, T:0.24
Consensus pattern (21 bp):
CACACGAGTGTGTGCCCCTTC
Found at i:65979838 original size:49 final size:49
Alignment explanation
Indices: 65979768--65980139 Score: 554
Period size: 49 Copynumber: 7.7 Consensus size: 49
65979758 CCCTTCGGGA
* * *
65979768 CTTATCACAT-T-TATACACTTTCGCATTCATCACTTCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65979815 CTTATCACATATATATACACTTTCGCATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65979864 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65979913 CTTATCACATATATACACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65979962 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** **
65980009 CTTATCACACACGTATACGGTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
65980058 CTTATCACATACGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65980107 CTTATCTCATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
65980140 GCGTAAAATC
Statistics
Matches: 305, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
47 55 0.18
48 1 0.00
49 249 0.82
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65980097 original size:194 final size:194
Alignment explanation
Indices: 65979768--65980139 Score: 573
Period size: 194 Copynumber: 1.9 Consensus size: 194
65979758 CCCTTCGGGA
* * * * *
65979768 CTTATCACATTTATACACTTTCGCATTCATCACTTCGACCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACACACATATAC
* * * *
65979833 ACTTTCGCATTCATCACTTCGGCCATTAGGCCTTATCACATATATATACACTTTCGCATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATATACACTTTCACATTCATCA
* *
65979898 CATCGGCCATTAGGCCTTATCACATATATACACACTTTCGCATTCATCACATCGGCCATTAGGC
131 CATCGGCCATTAGGCCTTATCACATATATACACACATTCACATTCATCACATCGGCCATTAGGC
* *
65979962 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACACGTATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACACACATATAC
** * *
65980027 GGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACGTATACGCTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATATACACTTTCACATTCATCA
* *
65980092 CATCGGCCATTAGGCCTTATCTCATATATATACACATTCACATTCATC
131 CATCGGCCATTAGGCCTTATCACATATATACACACATTCACATTCATC
65980140 GCGTAAAATC
Statistics
Matches: 159, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
194 159 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (194 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACACACATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATACACACATTCACATTCATCACATCGGCCATTAGGC
Found at i:65990246 original size:40 final size:40
Alignment explanation
Indices: 65990202--65990278 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
65990192 ACCTAGCCCT
65990202 GATACATCACTAGCACGAATGCTCTTCAGAACTTAGTCTG
1 GATACATCACTAGCACGAATGCTCTTCAGAACTTAGTCTG
*
65990242 GATACATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 GATACATCACTAGCACGAATGCTCTTCAGAACTTAGT
65990279 GCTCTTCGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (40 bp):
GATACATCACTAGCACGAATGCTCTTCAGAACTTAGTCTG
Found at i:65990283 original size:17 final size:17
Alignment explanation
Indices: 65990261--65990295 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
65990251 CTAGCACGAA
65990261 TGCTCTTCGGAACTTAG
1 TGCTCTTCGGAACTTAG
65990278 TGCTCTTCGGAACTTAG
1 TGCTCTTCGGAACTTAG
65990295 T
1 T
65990296 CCGGATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (17 bp):
TGCTCTTCGGAACTTAG
Found at i:65990291 original size:57 final size:57
Alignment explanation
Indices: 65990221--65990335 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
65990211 CTAGCACGAA
*
65990221 TGCTCTTCAGAACTTAGTCTGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
1 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
*
65990278 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
1 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
65990335 T
1 T
65990336 CCGGATACAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (57 bp):
TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:65992646 original size:49 final size:49
Alignment explanation
Indices: 65992472--65993035 Score: 804
Period size: 49 Copynumber: 11.7 Consensus size: 49
65992462 CCCTTCGGGA
* * * * *
65992472 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65992519 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65992566 CTTGTCACATATATACAC-CTTCTCA-A-TCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTT-TCACATTCATCACATCGGCCATTAGGC
*
65992613 CTTATCACATATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65992662 CTTATCACATATATATACACTTTCGCATTCATCACTTCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65992711 CTTATCACATATATATACACTTTCGCATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65992760 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65992809 CTTATCACATATATACACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65992858 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** **
65992905 CTTATCACATACGTATACGGTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
65992954 CTTATCACATACGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65993003 CTTATCTCATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
65993036 GCGTAAAATC
Statistics
Matches: 477, Mismatches: 30, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 128 0.27
48 8 0.02
49 340 0.71
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65992955 original size:243 final size:241
Alignment explanation
Indices: 65992472--65993035 Score: 823
Period size: 243 Copynumber: 2.3 Consensus size: 241
65992462 CCCTTCGGGA
* * * *
65992472 CTTATCACAT-TTATACACTTTCACATCCATCACGTT-GGCCACTCGGCCCTATCAC--ATATAT
1 CTTATCACATATTATACACTTTCACATTCATCAC-TTCGGCCATTAGGCCTTATCACATATATAT
* * * *
65992533 ACACTTTCACATTCATCACATTGGCCATTTGGCCTTGTCACATATATACACCTTCTCAATCATCA
65 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCGCAATCATCA
*
65992598 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACTTCGGCCATTAGGCC
130 CATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
65992663 TTATCACATATATATACACTTTCGCATTCATCACTTCGACCATTAGGC
194 TTATCACATACATATACACTTTCACATTCATCACATCGACCATTAGGC
*
65992711 CTTATCACATATATATACACTTTCGCATTCATCACTTCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATAT-TATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATAT
* *
65992776 ACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCGCATTCAT
65 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-C-TTCGCAATCAT
65992841 CACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
128 CACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
65992905 CTTATCACATACGTATACGGTTTCACATTCATCACATCGGCCATTAGGC
193 CTTATCACATACATATACACTTTCACATTCATCACATCGACCATTAGGC
* * * *
65992954 CTTATCACATACGTATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAT
1 CTTATCACATA-TTATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATAT
*
65993019 ACACATTCACATTCATC
65 ACACTTTCACATTCATC
65993036 GCGTAAAATC
Statistics
Matches: 291, Mismatches: 26, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
239 10 0.03
240 3 0.01
241 36 0.12
243 207 0.71
244 1 0.00
245 34 0.12
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (241 bp):
CTTATCACATATTATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCGCAATCATCAC
ATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATACATATACACTTTCACATTCATCACATCGACCATTAGGC
Found at i:65999082 original size:46 final size:46
Alignment explanation
Indices: 65999032--65999131 Score: 150
Period size: 46 Copynumber: 2.2 Consensus size: 46
65999022 GAACTCATTT
*
65999032 AGTTGAGTCCGAGTTCACTTA-TGGATGCGAATGTCC-GAGCTCGTTG
1 AGTTGAGTCCGAGTTCACTTACT-GATGCGAACG-CCTGAGCTCGTTG
*
65999078 AGTTGAGTCTGAGTTCACTTACTGATGCGAACGCCTGAGCTCGTTG
1 AGTTGAGTCCGAGTTCACTTACTGATGCGAACGCCTGAGCTCGTTG
65999124 AGTTGAGT
1 AGTTGAGT
65999132 TCGATCGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
45 2 0.04
46 47 0.94
47 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
AGTTGAGTCCGAGTTCACTTACTGATGCGAACGCCTGAGCTCGTTG
Found at i:66001950 original size:19 final size:18
Alignment explanation
Indices: 66001921--66001961 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 18
66001911 TTGTAAAAGT
66001921 TGTGAAAATGAGTAGAAAAA
1 TGTGAAAATGAG-AG-AAAA
66001941 TGTG-AAATGAGAGAAAA
1 TGTGAAAATGAGAGAAAA
66001958 TGTG
1 TGTG
66001962 TAACACCCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 2 0.10
19 7 0.33
20 4 0.19
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (18 bp):
TGTGAAAATGAGAGAAAA
Found at i:66003453 original size:39 final size:40
Alignment explanation
Indices: 66003339--66003555 Score: 249
Period size: 39 Copynumber: 5.7 Consensus size: 40
66003329 GGATATAACC
* * * * *
66003339 ACTCGCAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
66003378 ACTAGCACAAATGCCTTCGGG-----GCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
66003413 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
66003452 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
66003491 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
66003530 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
66003556 ACCCCGTTAG
Statistics
Matches: 161, Mismatches: 10, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
35 31 0.19
39 105 0.65
40 25 0.16
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:66011452 original size:39 final size:39
Alignment explanation
Indices: 66011419--66011641 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 39
66011409 GGATATAACC
* * * *
66011419 ACTCGCAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTA
*
66011458 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTA
66011498 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTA
66011537 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTA
* *
66011576 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
* *
66011616 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGG-CTTA
66011642 ACCCCATTAG
Statistics
Matches: 170, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 82 0.48
40 88 0.52
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTA
Found at i:66011529 original size:79 final size:80
Alignment explanation
Indices: 66011394--66011641 Score: 328
Period size: 79 Copynumber: 3.1 Consensus size: 80
66011384 ACCCAATTAT
* *** * * * *
66011394 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
66011456 TCACTAGCACAAATGC
65 TCACTAGCACAAATGC
66011472 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
66011536 AACTCGCACAAATGC
66 CACTAGCACAAATGC
*
66011551 CTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
66011614 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
66011630 CTTCGGGACTTA
1 CTTCGGGACTTA
66011642 ACCCCATTAG
Statistics
Matches: 151, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
77 1 0.01
78 49 0.32
79 84 0.56
80 17 0.11
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:66020436 original size:77 final size:74
Alignment explanation
Indices: 66020309--66020473 Score: 208
Period size: 77 Copynumber: 2.2 Consensus size: 74
66020299 ATGGCCTGAC
* *
66020309 ACACAGTCGTGTGGGACATACGGATGTATCCCAAGCTGTATTGATACAT-GGCATAAAAGCATAT
1 ACACAGTCGTGTGGGACACACGGACGTATCCCAAGCTGTATTGATACATGGGC-TAAAAGC--AT
66020373 ACACGGTTAATAG
63 -CACGGTTAATAG
* * * *
66020386 ACACAGTCGTGTGGGATACAC-GAGCGTCTCCGAAGCTGTGTTGATACATGGGCTAAAAGCATCA
1 ACACAGTCGTGTGGGACACACGGA-CGTATCCCAAGCTGTATTGATACATGGGCTAAAAGCATCA
66020450 CGGTTAATAG
65 CGGTTAATAG
*
66020460 ACACGGTCGTGTGG
1 ACACAGTCGTGTGG
66020474 CCCAACACGG
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
74 25 0.32
75 2 0.03
76 2 0.03
77 47 0.59
78 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (74 bp):
ACACAGTCGTGTGGGACACACGGACGTATCCCAAGCTGTATTGATACATGGGCTAAAAGCATCAC
GGTTAATAG
Found at i:66022557 original size:24 final size:24
Alignment explanation
Indices: 66022529--66022574 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
66022519 TTTTATTTAT
66022529 TTTTATTTTTATT-TTCAATTGTAA
1 TTTTATTTTTATTGTT-AATTGTAA
66022553 TTTTATTTTTATTGTTAATTGT
1 TTTTATTTTTATTGTTAATTGT
66022575 TTTATTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.70
Consensus pattern (24 bp):
TTTTATTTTTATTGTTAATTGTAA
Found at i:66027407 original size:40 final size:40
Alignment explanation
Indices: 66027348--66027516 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
66027338 CGGGACTTTA
* * *
66027348 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
66027388 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
66027428 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
66027468 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
66027508 CCCGGATAT
1 CCCGGATAT
66027517 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:66035414 original size:40 final size:40
Alignment explanation
Indices: 66035355--66035523 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
66035345 CGGGACTTTA
* * *
66035355 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
66035395 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
66035435 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
66035475 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
66035515 CCCGGATAT
1 CCCGGATAT
66035524 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:66039644 original size:33 final size:33
Alignment explanation
Indices: 66039607--66039673 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
66039597 CCTTTTGTGT
66039607 TGACATTTCTATTCATTCATATAGTATGTTGCA
1 TGACATTTCTATTCATTCATATAGTATGTTGCA
66039640 TGACATTTCTATTCATTCATATAGTATGTTGCA
1 TGACATTTCTATTCATTCATATAGTATGTTGCA
66039673 T
1 T
66039674 TCCATTCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (33 bp):
TGACATTTCTATTCATTCATATAGTATGTTGCA
Found at i:66046436 original size:40 final size:40
Alignment explanation
Indices: 66046381--66046505 Score: 182
Period size: 40 Copynumber: 3.1 Consensus size: 40
66046371 GCTTGCAATG
* * *
66046381 CATTGACTTGGTTATGTTACCGTAAGCATGTTAAGCATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
66046421 CATTGAATTGATTATGTTACCATAAGCATGTTAA-CTATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAGC-ATGC
*
66046461 CATTGAATTGATTATGTTTCCATAAGCATG-TAAGACATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAG-CATGC
66046501 CATTG
1 CATTG
66046506 TACTTAAATC
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
39 4 0.05
40 73 0.94
41 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (40 bp):
CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
Done.