Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 218 of 438
Found at i:67299755 original size:13 final size:14
Alignment explanation
Indices: 67299737--67299773 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
67299727 ATAAATCACT
67299737 TTTTTTTTTC-GAA
1 TTTTTTTTTCGGAA
67299750 TTTTTTTTTCGGAA
1 TTTTTTTTTCGGAA
67299764 TTTTTTTTTC
1 TTTTTTTTTC
67299774 AAACTTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.11, C:0.08, G:0.08, T:0.73
Consensus pattern (14 bp):
TTTTTTTTTCGGAA
Found at i:67299755 original size:14 final size:15
Alignment explanation
Indices: 67299736--67299772 Score: 60
Period size: 13 Copynumber: 2.6 Consensus size: 15
67299726 CATAAATCAC
67299736 TTTTTTTTTTC-GAA
1 TTTTTTTTTTCGGAA
67299750 -TTTTTTTTTCGGAA
1 TTTTTTTTTTCGGAA
67299764 TTTTTTTTT
1 TTTTTTTTT
67299773 CAAACTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.48
14 3 0.14
15 8 0.38
ACGTcount: A:0.11, C:0.05, G:0.08, T:0.76
Consensus pattern (15 bp):
TTTTTTTTTTCGGAA
Found at i:67303338 original size:30 final size:28
Alignment explanation
Indices: 67303285--67303340 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
67303275 TTCTTCCACG
* *
67303285 CTTTCTTTTTGCTCACTCTCTTTTTCAA
1 CTTTCTTTTTGCACACACTCTTTTTCAA
67303313 CTTTACTTTCTTGCACACACTCTTTTTC
1 CTTT-CTTT-TTGCACACACTCTTTTTC
67303341 TTTTTCGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.12, C:0.30, G:0.04, T:0.54
Consensus pattern (28 bp):
CTTTCTTTTTGCACACACTCTTTTTCAA
Found at i:67304435 original size:10 final size:9
Alignment explanation
Indices: 67304410--67304434 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
67304400 TTGTTTGAAA
67304410 TTTTTTTCG
1 TTTTTTTCG
67304419 TTTTTTTCG
1 TTTTTTTCG
67304428 TTTTTTT
1 TTTTTTT
67304435 TAAACTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (9 bp):
TTTTTTTCG
Found at i:67304676 original size:15 final size:15
Alignment explanation
Indices: 67304656--67304703 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
67304646 TCAAAGATGG
67304656 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
67304671 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
67304686 -TTTATGGATATAAA
1 GTTTATGGATATGAA
67304700 GTTT
1 GTTT
67304704 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:67304683 original size:29 final size:29
Alignment explanation
Indices: 67304650--67304709 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
67304640 AAGGATTCAA
* *
67304650 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
67304679 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
67304708 AG
1 AG
67304710 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:67307075 original size:19 final size:20
Alignment explanation
Indices: 67307041--67307090 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
67307031 GAAATTAAGC
*
67307041 ACTTCACAATTTTTTTTTAT-
1 ACTTCA-AAGTTTTTTTTATA
*
67307061 ATTTCAAAGTTTTTTTTATA
1 ACTTCAAAGTTTTTTTTATA
67307081 ACTTCAAAGT
1 ACTTCAAAGT
67307091 AATGCTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.30, C:0.12, G:0.04, T:0.54
Consensus pattern (20 bp):
ACTTCAAAGTTTTTTTTATA
Found at i:67307646 original size:19 final size:19
Alignment explanation
Indices: 67307622--67307661 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
67307612 AGCTCCTATG
67307622 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
67307641 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
67307660 TA
1 TA
67307662 TCAGCTCATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:67309318 original size:11 final size:12
Alignment explanation
Indices: 67309302--67309343 Score: 70
Period size: 11 Copynumber: 3.7 Consensus size: 12
67309292 TATACAAGTT
67309302 AAAAAAAATTC-
1 AAAAAAAATTCG
67309313 AAAAAAAATTCG
1 AAAAAAAATTCG
67309325 AAAAAAAA-TCG
1 AAAAAAAATTCG
67309336 AAAAAAAA
1 AAAAAAAA
67309344 GTGATTTATG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.76, C:0.07, G:0.05, T:0.12
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:67312214 original size:14 final size:14
Alignment explanation
Indices: 67312192--67312239 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
67312182 ACCTAAACCG
* *
67312192 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
67312206 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
67312220 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
67312234 ACCATT
1 ACCATT
67312240 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:67313700 original size:39 final size:39
Alignment explanation
Indices: 67313666--67313742 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
67313656 TTTAGTTTAT
67313666 GTCTTTAATTATGTTATAGTTTGAACATCATTAGTATGA
1 GTCTTTAATTATGTTATAGTTTGAACATCATTAGTATGA
*
67313705 GTCTTTAATTATGTTATAGTTTGAATATCATTAGTATG
1 GTCTTTAATTATGTTATAGTTTGAACATCATTAGTATG
67313743 TGTTCTGTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.30, C:0.06, G:0.16, T:0.48
Consensus pattern (39 bp):
GTCTTTAATTATGTTATAGTTTGAACATCATTAGTATGA
Found at i:67313737 original size:22 final size:22
Alignment explanation
Indices: 67313673--67313737 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
67313663 TATGTCTTTA
*
67313673 ATTATGTTATAGTTTGAACATC
1 ATTATGTTATAGTTTGAATATC
67313695 ATTA-G-TATGAGTCTT---TA--
1 ATTATGTTAT-AGT-TTGAATATC
67313712 ATTATGTTATAGTTTGAATATC
1 ATTATGTTATAGTTTGAATATC
67313734 ATTA
1 ATTA
67313738 GTATGTGTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 18
0.63 0.02 0.35
Matches are distributed among these distances:
17 6 0.18
18 4 0.12
19 4 0.12
20 5 0.15
21 4 0.12
22 10 0.30
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (22 bp):
ATTATGTTATAGTTTGAATATC
Found at i:67313879 original size:52 final size:50
Alignment explanation
Indices: 67313759--67313881 Score: 165
Period size: 50 Copynumber: 2.4 Consensus size: 50
67313749 GTATTTAATA
* *
67313759 AAGTCATGCATTATGTAATTCTCATGTAAGTTAAGTTTGCATCATAAATT
1 AAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCATCATAAATT
* * * *
67313809 ATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGTATCATTAAATT
1 AAGTCATGCATTATGTAACTCCCATGTAAGTT-AAGTTTGCATCA-TAAATT
*
67313861 AAGTCATGCATTAAGTAACTC
1 AAGTCATGCATTATGTAACTC
67313882 ATTTGTTCAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 27 0.44
51 11 0.18
52 24 0.39
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (50 bp):
AAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCATCATAAATT
Found at i:67318428 original size:30 final size:30
Alignment explanation
Indices: 67318394--67318490 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
67318384 TAAACTAAAA
67318394 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
67318424 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
67318454 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
67318484 TGAGCTA
1 TGAGCTA
67318491 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:67320796 original size:30 final size:30
Alignment explanation
Indices: 67320725--67320807 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
67320715 CTTTTGTTTC
* *
67320725 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
67320756 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
67320785 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
67320808 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:67320807 original size:18 final size:18
Alignment explanation
Indices: 67320758--67320813 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
67320748 CACTCTCAAA
* *
67320758 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
67320775 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
67320793 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
67320812 TT
1 TT
67320814 CAAAGGTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:67320814 original size:12 final size:12
Alignment explanation
Indices: 67320783--67320807 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67320773 TTTTTCAATC
67320783 TCATTTTCTTTT
1 TCATTTTCTTTT
67320795 TCATTTTCTTTT
1 TCATTTTCTTTT
67320807 T
1 T
67320808 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:67320882 original size:5 final size:5
Alignment explanation
Indices: 67320872--67320928 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
67320862 CTCTTGCCTC
*
67320872 TCTTT TCTTT T-TATT TCTTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
67320919 TCTTT TCTTT
1 TCTTT TCTTT
67320929 ATTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:67320892 original size:15 final size:14
Alignment explanation
Indices: 67320872--67320935 Score: 65
Period size: 16 Copynumber: 4.2 Consensus size: 14
67320862 CTCTTGCCTC
67320872 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-TT
*
67320887 TCTTTTTCTTTTTCT
1 TC-TTTTCTTTTTTT
67320902 TCTTTTGCTTTTTCTTT
1 TCTTTT-C-TTTT-TTT
*
67320919 TCTTTTCTTTATTT
1 TCTTTTCTTTTTTT
67320933 TCT
1 TCT
67320936 CTTTACAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
14 10 0.24
15 9 0.21
16 15 0.36
17 8 0.19
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:67320904 original size:25 final size:25
Alignment explanation
Indices: 67320876--67320924 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
67320866 TGCCTCTCTT
67320876 TTCTTTT-TATTTCTTTTTCTTTTTC
1 TTCTTTTCTATTTC-TTTTCTTTTTC
*
67320901 TTCTTTTGCTTTTTCTTTTCTTTT
1 TTCTTTT-CTATTTCTTTTCTTTT
67320925 CTTTATTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 9 0.43
27 5 0.24
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (25 bp):
TTCTTTTCTATTTCTTTTCTTTTTC
Found at i:67320938 original size:21 final size:20
Alignment explanation
Indices: 67320870--67320939 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 20
67320860 GCCTCTTGCC
67320870 TCTCTTTTCTTTT-TATTTCTT
1 TCTCTTTTCTTTTCT-TTT-TT
* *
67320891 TTTCTTTT-TCTTCTTTTGCTT
1 TCTCTTTTCTTTTCTTTT--TT
*
67320912 TTTCTTTTCTTTTCTTTATTT
1 TCTCTTTTCTTTTCTTT-TTT
67320933 TCTCTTT
1 TCTCTTT
67320940 ACAAGAATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
20 6 0.15
21 27 0.66
22 7 0.17
23 1 0.02
ACGTcount: A:0.03, C:0.19, G:0.01, T:0.77
Consensus pattern (20 bp):
TCTCTTTTCTTTTCTTTTTT
Found at i:67323068 original size:30 final size:30
Alignment explanation
Indices: 67323034--67323130 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
67323024 AGCTCACTCC
67323034 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
67323064 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
67323094 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
67323124 TAGCTCA
1 TAGCTCA
67323131 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:67325760 original size:47 final size:47
Alignment explanation
Indices: 67325708--67325810 Score: 179
Period size: 47 Copynumber: 2.2 Consensus size: 47
67325698 ATGCATATGT
*
67325708 GCCGTCCAAAGGAAATGTATGACACTAATCCATATGCATGTATCCAA
1 GCCGTCCAAAAGAAATGTATGACACTAATCCATATGCATGTATCCAA
*
67325755 GCCGTCCAAAAGAAATGTATGACATTAATCCATATGCATGTATCCAA
1 GCCGTCCAAAAGAAATGTATGACACTAATCCATATGCATGTATCCAA
*
67325802 GCCGCCCAA
1 GCCGTCCAA
67325811 GTGCATGCAC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (47 bp):
GCCGTCCAAAAGAAATGTATGACACTAATCCATATGCATGTATCCAA
Found at i:67327396 original size:30 final size:30
Alignment explanation
Indices: 67327362--67327458 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
67327352 AGCTCACTCC
67327362 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
67327392 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
67327422 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
67327452 TAGCTCA
1 TAGCTCA
67327459 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:67329536 original size:15 final size:15
Alignment explanation
Indices: 67329516--67329563 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
67329506 TCAAAGATGG
67329516 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
67329531 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
67329546 -TTTATGGATATAAA
1 GTTTATGGATATGAA
67329560 GTTT
1 GTTT
67329564 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:67329543 original size:29 final size:29
Alignment explanation
Indices: 67329510--67329569 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
67329500 AAGGATTCAA
* *
67329510 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
67329539 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
67329568 AG
1 AG
67329570 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:67332836 original size:30 final size:28
Alignment explanation
Indices: 67332783--67332838 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
67332773 TTCTTCCACG
* *
67332783 CTTTCTTTTTGCTCACTCTCTTTTTCAA
1 CTTTCTTTTTGCACACACTCTTTTTCAA
67332811 CTTTACTTTCTTGCACACACTCTTTTTC
1 CTTT-CTTT-TTGCACACACTCTTTTTC
67332839 TTTTTCGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.12, C:0.30, G:0.04, T:0.54
Consensus pattern (28 bp):
CTTTCTTTTTGCACACACTCTTTTTCAA
Found at i:67333920 original size:10 final size:9
Alignment explanation
Indices: 67333905--67333931 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
67333895 TTGTTTGAAA
67333905 TTTTTTTCG
1 TTTTTTTCG
67333914 TTTTTTTCG
1 TTTTTTTCG
67333923 TTTTTTTCG
1 TTTTTTTCG
67333932 AAACTTACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.78
Consensus pattern (9 bp):
TTTTTTTCG
Found at i:67334172 original size:15 final size:15
Alignment explanation
Indices: 67334152--67334199 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
67334142 TCAAAGATGG
67334152 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
67334167 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
67334182 -TTTATGGATATAAA
1 GTTTATGGATATGAA
67334196 GTTT
1 GTTT
67334200 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:67334179 original size:29 final size:29
Alignment explanation
Indices: 67334146--67334205 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
67334136 AAGGATTCAA
* *
67334146 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
67334175 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
67334204 AG
1 AG
67334206 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:67336566 original size:19 final size:20
Alignment explanation
Indices: 67336532--67336581 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
67336522 GAAATTAAGC
*
67336532 ACTTCACAATTTTTTTTTAT-
1 ACTTCA-AAGTTTTTTTTATA
*
67336552 ATTTCAAAGTTTTTTTTATA
1 ACTTCAAAGTTTTTTTTATA
67336572 ACTTCAAAGT
1 ACTTCAAAGT
67336582 AATGCTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.30, C:0.12, G:0.04, T:0.54
Consensus pattern (20 bp):
ACTTCAAAGTTTTTTTTATA
Found at i:67337136 original size:19 final size:19
Alignment explanation
Indices: 67337112--67337151 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
67337102 AGCTCCCATG
67337112 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
67337131 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
67337150 TA
1 TA
67337152 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:67337189 original size:16 final size:19
Alignment explanation
Indices: 67337152--67337189 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
67337142 CAGCTCATTA
67337152 TCAGCTCACGAGTTTAAGC
1 TCAGCTCACGAGTTTAAGC
67337171 TCAGCTCA-G-GTTT-AGC
1 TCAGCTCACGAGTTTAAGC
67337187 TCA
1 TCA
67337190 TGAATTAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 4 0.21
18 1 0.05
19 8 0.42
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (19 bp):
TCAGCTCACGAGTTTAAGC
Found at i:67338833 original size:10 final size:11
Alignment explanation
Indices: 67338794--67338833 Score: 64
Period size: 12 Copynumber: 3.6 Consensus size: 11
67338784 ATACAAGTTA
67338794 AAAAAAATTCG
1 AAAAAAATTCG
67338805 AAAAAAAATTCG
1 -AAAAAAATTCG
67338817 AAAAAAA-TCG
1 AAAAAAATTCG
67338827 AAAAAAA
1 AAAAAAA
67338834 AGTGATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 10 0.36
11 7 0.25
12 11 0.39
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.12
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:67338834 original size:11 final size:12
Alignment explanation
Indices: 67338793--67338834 Score: 70
Period size: 11 Copynumber: 3.7 Consensus size: 12
67338783 TATACAAGTT
67338793 AAAAAAAATTCG
1 AAAAAAAATTCG
67338805 AAAAAAAATTCG
1 AAAAAAAATTCG
67338817 -AAAAAAA-TCG
1 AAAAAAAATTCG
67338827 AAAAAAAA
1 AAAAAAAA
67338835 GTGATTTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 3 0.10
11 14 0.48
12 12 0.41
ACGTcount: A:0.74, C:0.07, G:0.07, T:0.12
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:67346700 original size:10 final size:10
Alignment explanation
Indices: 67346681--67346710 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
67346671 AGCTCGTCCG
67346681 AGCTCGATTTT
1 AGCTC-ATTTT
67346692 AGCTCATTTT
1 AGCTCATTTT
67346702 AGCTCATTT
1 AGCTCATTT
67346711 CTTTTCCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.74
11 5 0.26
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (10 bp):
AGCTCATTTT
Found at i:67349181 original size:40 final size:40
Alignment explanation
Indices: 67348989--67349174 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
67348979 TCGAATGATG
* * *
67348989 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
67349029 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67349069 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67349109 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67349150 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67349175 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67349181 original size:80 final size:80
Alignment explanation
Indices: 67348989--67349207 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
67348979 TCGAATGATG
* * **
67348989 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
67349053 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
67349069 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
67349133 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
67349150 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
67349208 TACGTGATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 16 0.13
80 97 0.80
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:67352227 original size:19 final size:18
Alignment explanation
Indices: 67352201--67352240 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
67352191 GCAATCAAAC
*
67352201 TTTTTTTTCCCATTTTCT
1 TTTTTTTTCCCACTTTCT
*
67352219 TTTTCTTTTCTCACTTTCT
1 TTTT-TTTTCCCACTTTCT
67352238 TTT
1 TTT
67352241 CTCTCTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTTTTCCCACTTTCT
Found at i:67352268 original size:19 final size:18
Alignment explanation
Indices: 67352246--67352295 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
67352236 CTTTTCTCTC
67352246 TCTTTTGCT-ATTTTTGTGT
1 TCTTTT-CTCATTTTT-TGT
*
67352265 TCTTTTCTCATTTTTTTT
1 TCTTTTCTCATTTTTTGT
67352283 TCTTTT-TCATTTT
1 TCTTTTCTCATTTT
67352296 CTTTCAATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 7 0.24
18 10 0.34
19 12 0.41
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (18 bp):
TCTTTTCTCATTTTTTGT
Found at i:67352298 original size:30 final size:30
Alignment explanation
Indices: 67352201--67352299 Score: 85
Period size: 30 Copynumber: 3.3 Consensus size: 30
67352191 GCAATCAAAC
*
67352201 TTTT-TTTTCCCATTTTCTTTTTCTTTTCTCA
1 TTTTCTTTTCTCATTTT-TTTTTCTTTT-TCA
* * * * **
67352232 CTTTCTTTTCTC-TCTCTTTTGCTATTTTTG
1 TTTTCTTTTCTCATTTTTTTTTCT-TTTTCA
*
67352262 TGTTCTTTTCTCATTTTTTTTTCTTTTTCA
1 TTTTCTTTTCTCATTTTTTTTTCTTTTTCA
67352292 TTTTCTTT
1 TTTTCTTT
67352300 CAATTGATTT
Statistics
Matches: 50, Mismatches: 15, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
30 28 0.56
31 16 0.32
32 6 0.12
ACGTcount: A:0.05, C:0.20, G:0.03, T:0.72
Consensus pattern (30 bp):
TTTTCTTTTCTCATTTTTTTTTCTTTTTCA
Found at i:67358481 original size:30 final size:30
Alignment explanation
Indices: 67358447--67358534 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
67358437 CTAGCTTATA
* *
67358447 TTCAGCTCATGAGCTAAACCTTAGCTCAAC
1 TTCAGCTTAAGAGCTAAACCTTAGCTCAAC
* * *
67358477 TTCAGCTTAGGAG-TATAATCTCAGCTCAAC
1 TTCAGCTTAAGAGCTA-AACCTTAGCTCAAC
* * *
67358507 TTTAGCTTAAGGGCTAAAGCTTAGCTCA
1 TTCAGCTTAAGAGCTAAACCTTAGCTCA
67358535 TTTAGCTCAA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
29 2 0.04
30 43 0.91
31 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (30 bp):
TTCAGCTTAAGAGCTAAACCTTAGCTCAAC
Found at i:67361640 original size:28 final size:29
Alignment explanation
Indices: 67361609--67361685 Score: 138
Period size: 29 Copynumber: 2.7 Consensus size: 29
67361599 TGATGAGATA
*
67361609 GGCACTAAGTGTGCGTGCTGG-AATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
67361637 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
67361666 GGCACTAAGTGTGCATGCTG
1 GGCACTAAGTGTGCATGCTG
67361686 AAAAAAAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 20 0.43
29 27 0.57
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:67364250 original size:26 final size:26
Alignment explanation
Indices: 67364214--67364323 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
67364204 CATGAAATTC
67364214 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
67364240 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
67364266 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
67364292 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
67364318 TTATCA
1 TTATCA
67364324 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:67368352 original size:18 final size:18
Alignment explanation
Indices: 67368329--67368370 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
67368319 TAAAAATGAG
*
67368329 AGAAAAGAATAAAGA-TCA
1 AGAAAACAA-AAAGAGTCA
*
67368347 AGAAAACAAAAAGAGTGA
1 AGAAAACAAAAAGAGTCA
67368365 AGAAAA
1 AGAAAA
67368371 AACGAGTGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.69, C:0.05, G:0.19, T:0.07
Consensus pattern (18 bp):
AGAAAACAAAAAGAGTCA
Found at i:67376934 original size:20 final size:20
Alignment explanation
Indices: 67376905--67376949 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
67376895 AGCACATGTA
*
67376905 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTAGAACTT
* *
67376925 TTCATCAAATTTTATAACTT
1 TTCATAAAATTTTAGAACTT
67376945 TTCAT
1 TTCAT
67376950 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTAGAACTT
Found at i:67380639 original size:43 final size:41
Alignment explanation
Indices: 67380592--67380685 Score: 98
Period size: 43 Copynumber: 2.2 Consensus size: 41
67380582 ATGTGTTCTT
* * *
67380592 GTGTAAGACCACATCTGGGACATTGGCATCGATATGTGATTAC
1 GTGTAAGACCACATCTAGGACATCGACATCG-TATGTGATT-C
* ** *
67380635 GTGTATGACCATGTCTAGGACATCGACATCGTATTTGATTC
1 GTGTAAGACCACATCTAGGACATCGACATCGTATGTGATTC
*
67380676 ATGTAAGACC
1 GTGTAAGACC
67380686 CTGTTTGGGA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
41 9 0.21
42 8 0.19
43 25 0.60
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (41 bp):
GTGTAAGACCACATCTAGGACATCGACATCGTATGTGATTC
Found at i:67382145 original size:32 final size:32
Alignment explanation
Indices: 67382109--67382170 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
67382099 AAAATTAAAG
*
67382109 TGTTAGTTTAAATGGTTACTTTATATAATGCA
1 TGTTAGTTAAAATGGTTACTTTATATAATGCA
67382141 TGTTAGTTAAAATGGTTACTTTATATAATG
1 TGTTAGTTAAAATGGTTACTTTATATAATG
67382171 TATATAGGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.05, G:0.16, T:0.47
Consensus pattern (32 bp):
TGTTAGTTAAAATGGTTACTTTATATAATGCA
Found at i:67386262 original size:39 final size:39
Alignment explanation
Indices: 67386219--67386330 Score: 179
Period size: 39 Copynumber: 2.9 Consensus size: 39
67386209 ACATATTTCT
* * *
67386219 AGCACGTAGCCTGCAGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
*
67386258 AGCACATAGCCTGCGGACCCTAAGTCCAGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
*
67386297 AGCACATAGCCTGTGGACCCTAAGTCCGGATATA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATA
67386331 CATCACTGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
Found at i:67387250 original size:20 final size:22
Alignment explanation
Indices: 67387225--67387273 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
67387215 GACATCTAGG
67387225 TGTTCACAC-AAT-AATTAAAA
1 TGTTCACACTAATGAATTAAAA
*
67387245 TGTTCACACTAATGTATTAAAA
1 TGTTCACACTAATGAATTAAAA
67387267 TAGTTCA
1 T-GTTCA
67387274 TAAATTCGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
21 3 0.12
22 8 0.32
23 5 0.20
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (22 bp):
TGTTCACACTAATGAATTAAAA
Found at i:67388259 original size:30 final size:30
Alignment explanation
Indices: 67388172--67388268 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
67388162 TAAAATAAAA
* *
67388172 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * * *
67388202 TGAGCTGAGGCTAAACTCCTAAACTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
67388232 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
67388261 ATGAGCTA
1 -TGAGCTA
67388269 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
29 1 0.02
30 49 0.98
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:67390551 original size:30 final size:30
Alignment explanation
Indices: 67390481--67390562 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
67390471 TTTTGTTTTA
* *
67390481 ATTTCTTTTTCATCTTCTTTTTCACTCTCAG
1 ATTTCTTTTTCTTC-TCTTTTTCAATCTCAG
67390512 ATTTC-TTTTCGTTCTCTTTTTCAATCTCA-
1 ATTTCTTTTTC-TTCTCTTTTTCAATCTCAG
* *
67390541 TTTTCTTTTTCATTTTCTTTTT
1 ATTTCTTTTTC-TTCTCTTTTT
67390563 GCTTTTCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 4 0.09
30 33 0.75
31 7 0.16
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (30 bp):
ATTTCTTTTTCTTCTCTTTTTCAATCTCAG
Found at i:67390562 original size:18 final size:18
Alignment explanation
Indices: 67390513--67390568 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
67390503 CACTCTCAGA
* *
67390513 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
67390530 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
67390548 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
67390567 TT
1 TT
67390569 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:67390569 original size:12 final size:12
Alignment explanation
Indices: 67390538--67390562 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67390528 TTTTTCAATC
67390538 TCATTTTCTTTT
1 TCATTTTCTTTT
67390550 TCATTTTCTTTT
1 TCATTTTCTTTT
67390562 T
1 T
67390563 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:67390641 original size:5 final size:5
Alignment explanation
Indices: 67390631--67390704 Score: 62
Period size: 5 Copynumber: 14.0 Consensus size: 5
67390621 CTCTTGCCTC
*
67390631 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTT TGCTTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-CTTT T-C-TTT
*
67390679 TCTTT TCTTT TCTTT GCTTT CTCTTT
1 TCTTT TCTTT TCTTT TCTTT -TCTTT
67390705 ACAAGAATGT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
4 4 0.07
5 33 0.57
6 16 0.28
7 5 0.09
ACGTcount: A:0.03, C:0.19, G:0.04, T:0.74
Consensus pattern (5 bp):
TCTTT
Found at i:67390677 original size:21 final size:20
Alignment explanation
Indices: 67390644--67390703 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
67390634 TTTCTTTTTA
67390644 TTTCATTTT-CTTTTTCTTCT
1 TTTC-TTTTGCTTTTTCTTCT
67390664 TTTGCTTTTGCTTTTTCTTTTCT
1 TTT-CTTTTGCTTTTTC--TTCT
*
67390687 TTTC-TTTGCTTTCTCTT
1 TTTCTTTTGCTTTTTCTT
67390704 TACAAGAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
19 2 0.06
20 7 0.20
21 18 0.51
22 1 0.03
23 7 0.20
ACGTcount: A:0.02, C:0.20, G:0.05, T:0.73
Consensus pattern (20 bp):
TTTCTTTTGCTTTTTCTTCT
Found at i:67390704 original size:21 final size:23
Alignment explanation
Indices: 67390660--67390704 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
67390650 TTTCTTTTTC
*
67390660 TTCTTTTGCTTTTGCTTTTTCTT
1 TTCTTTTGCTTTTGCTTTCTCTT
67390683 TTCTTTT-C-TTTGCTTTCTCTT
1 TTCTTTTGCTTTTGCTTTCTCTT
67390704 T
1 T
67390705 ACAAGAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.62
22 1 0.05
23 7 0.33
ACGTcount: A:0.00, C:0.20, G:0.07, T:0.73
Consensus pattern (23 bp):
TTCTTTTGCTTTTGCTTTCTCTT
Found at i:67393359 original size:30 final size:30
Alignment explanation
Indices: 67393274--67393370 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
67393264 TAAACTAAAA
* * *
67393274 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
* * * * * *
67393304 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
67393334 TGAGCTAAGGTTTAGCTCATGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
67393363 ATGAGCTA
1 -TGAGCTA
67393371 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
Found at i:67401814 original size:41 final size:43
Alignment explanation
Indices: 67401699--67401830 Score: 132
Period size: 43 Copynumber: 3.1 Consensus size: 43
67401689 ACATAGGATT
* * *
67401699 TCGATATGTG-TTCTCGTGTAAGACCACGTCTGGGGC-GTTGGCA
1 TCGATATGTGATT-ACGTGTAAGACCATGTCTGGGACAG-TGGCA
67401742 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACA-TCGGCA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACAGT-GGCA
* * *
67401785 TCG-TATTTGATT-TGTGTAAGATCC-TGTCTGTGACAGTGGCA
1 TCGATATGTGATTACGTGTAAGA-CCATGTCTGGGACAGTGGCA
67401826 TCGAT
1 TCGAT
67401831 TCATTGATAT
Statistics
Matches: 77, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
41 25 0.32
42 13 0.17
43 37 0.48
44 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCATGTCTGGGACAGTGGCA
Found at i:67403440 original size:46 final size:46
Alignment explanation
Indices: 67403390--67403562 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
67403380 TGGTTGAGCA
67403390 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67403436 TCCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
67403481 CATCCGAGCTCGTTGAGTTGAGTCCGAGCTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67403529 -CCCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
67403563 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.06
46 54 0.53
47 26 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67403556 original size:93 final size:93
Alignment explanation
Indices: 67403387--67403557 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
67403377 GGATGGTTGA
* * * *
67403387 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATACGAACGTCCCAACTCGTTGAGT
67403452 TAAGTCCGAGTTCGTGAGATGTAACTAG
66 TAAGTCCGAGTTCGTGAGATGTAACTAG
*
67403480 GCATCCGAGCTCGTTGAGTTGAGTCCGAGCTCACTTATGGATACGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATACGAACGTCCCAA-CTCGTTGAG
* *
67403544 TTGAGTCTGAGTTC
65 TTAAGTCCGAGTTC
67403558 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATACGAACGTCCCAACTCGTTGAGT
TAAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67409729 original size:11 final size:11
Alignment explanation
Indices: 67409713--67409742 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
67409703 CGAGATAGAA
67409713 ATAATTATTTT
1 ATAATTATTTT
67409724 ATAATTATTTT
1 ATAATTATTTT
*
67409735 ATGATTAT
1 ATAATTAT
67409743 GATATGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (11 bp):
ATAATTATTTT
Found at i:67411096 original size:45 final size:45
Alignment explanation
Indices: 67410941--67411106 Score: 169
Period size: 45 Copynumber: 3.6 Consensus size: 45
67410931 AGCATCCGAA
* * *
67410941 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT-AG
* * * *
67410987 CTCGTTGAGTTGAGTCCGAGTT--CGT-GGGATG-TAACTAGGCATCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G---CCTAG
67411034 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAG
*
67411079 CTCATTGAGTTGAGTCCGAGTTCACTTA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTA
67411107 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 32 0.33
46 22 0.22
47 23 0.23
48 2 0.02
49 2 0.02
50 5 0.05
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAG
Found at i:67413924 original size:2 final size:2
Alignment explanation
Indices: 67413917--67413954 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
67413907 AAGTTGTGAT
* *
67413917 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TG TT TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67413955 TGATGCCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (2 bp):
TA
Found at i:67419253 original size:40 final size:40
Alignment explanation
Indices: 67419126--67419255 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
67419116 ATGCTGGAAA
* *
67419126 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
67419166 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
67419206 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
67419246 TTATATCCGG
1 TTATATCCGG
67419256 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:67427295 original size:40 final size:40
Alignment explanation
Indices: 67427168--67427297 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
67427158 ATGCTGGAAA
* *
67427168 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
67427208 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
67427248 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
67427288 TTATATCCGG
1 TTATATCCGG
67427298 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:67428805 original size:20 final size:20
Alignment explanation
Indices: 67428780--67428824 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
67428770 AGGGACTAAA
*
67428780 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
* *
67428800 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTATAAAATTTG
67428820 ATGAA
1 ATGAA
67428825 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:67437400 original size:18 final size:18
Alignment explanation
Indices: 67437361--67437402 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
67437351 TGCACTCGTT
*
67437361 TTTTCTTCACTCTTTTTG
1 TTTTCTTCACTCTTTTTC
*
67437379 TTTTCTTGA-TCTTTATTC
1 TTTTCTTCACTCTTT-TTC
67437397 TTTTCT
1 TTTTCT
67437403 CTCATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.07, C:0.19, G:0.05, T:0.69
Consensus pattern (18 bp):
TTTTCTTCACTCTTTTTC
Found at i:67446339 original size:19 final size:19
Alignment explanation
Indices: 67446263--67446329 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
67446253 TCATATTAAA
67446263 AGTAATTCATTCG-ATAAC
1 AGTAATTCATTCGTATAAC
* * * *
67446281 AGCAACTCATCCTTATAAAC
1 AGTAATTCATTCGTAT-AAC
*
67446301 AGTACTTCATTCGTATAAC
1 AGTAATTCATTCGTATAAC
67446320 AGTAATTCAT
1 AGTAATTCAT
67446330 CTGTGTAACA
Statistics
Matches: 37, Mismatches: 10, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
18 9 0.24
19 14 0.38
20 14 0.38
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (19 bp):
AGTAATTCATTCGTATAAC
Found at i:67458473 original size:60 final size:60
Alignment explanation
Indices: 67458400--67458521 Score: 226
Period size: 60 Copynumber: 2.0 Consensus size: 60
67458390 ACTCAACTTG
67458400 CCTTCTCTACCGAATCTCAAAACCTTCTTCCATAGAGATACTTTCAAGAATACCTTATTA
1 CCTTCTCTACCGAATCTCAAAACCTTCTTCCATAGAGATACTTTCAAGAATACCTTATTA
* *
67458460 CCTTCTCTACCGAATCTTAAAACCTTCTTCCATGGAGATACTTTCAAGAATACCTTATTA
1 CCTTCTCTACCGAATCTCAAAACCTTCTTCCATAGAGATACTTTCAAGAATACCTTATTA
67458520 CC
1 CC
67458522 AACTTGATAC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (60 bp):
CCTTCTCTACCGAATCTCAAAACCTTCTTCCATAGAGATACTTTCAAGAATACCTTATTA
Found at i:67461556 original size:40 final size:40
Alignment explanation
Indices: 67461511--67461678 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
67461501 CGGAATATAA
67461511 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
67461551 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
67461591 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
67461631 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
67461671 CCGGATAT
1 CCGGATAT
67461679 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67461661 original size:80 final size:80
Alignment explanation
Indices: 67461527--67461676 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
67461517 ATAACCACGT
* *
67461527 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
67461592 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
67461607 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
67461670 CCCGGAT
64 CCCGGAT
67461677 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:67468429 original size:12 final size:11
Alignment explanation
Indices: 67468412--67468442 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
67468402 CAAGTTTTAA
67468412 AAAAAAAATTCG
1 AAAAAAAA-TCG
67468424 AAAAAAAATCG
1 AAAAAAAATCG
67468435 AAAAAAAA
1 AAAAAAAA
67468443 GTGATTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.10
Consensus pattern (11 bp):
AAAAAAAATCG
Found at i:67482092 original size:83 final size:83
Alignment explanation
Indices: 67481996--67482162 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
67481986 CTAATATAAC
67481996 CTTTTTCATTTCATTTAAAAACCACTAAGTAATGTCCAATTTTGTCCATGCATAATTCCAATGGC
1 CTTTTTCATTTCATTTAAAAACCACTAAGTAATGTCCAATTTTGTCCATGCATAATTCCAATGGC
67482061 CCATTTACATCTTAAGGA
66 CCATTTACATCTTAAGGA
67482079 CTTTTTCATTTCATTTAAAAACCACTAAGTAATGTCCAATTTTGTCCATGCATAATTCCAATGGC
1 CTTTTTCATTTCATTTAAAAACCACTAAGTAATGTCCAATTTTGTCCATGCATAATTCCAATGGC
67482144 CCATTTACATCTTAAGGA
66 CCATTTACATCTTAAGGA
67482162 C
1 C
67482163 CTCACATTTA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (83 bp):
CTTTTTCATTTCATTTAAAAACCACTAAGTAATGTCCAATTTTGTCCATGCATAATTCCAATGGC
CCATTTACATCTTAAGGA
Found at i:67489801 original size:49 final size:49
Alignment explanation
Indices: 67489632--67490027 Score: 647
Period size: 49 Copynumber: 8.2 Consensus size: 49
67489622 CGGGACTTAT
* * * * * * * *
67489632 CATATTTATACACTTCCACATCCATCACGTTGGCCATTCGGCCCTATCA
1 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
* *
67489681 CATATATACAC-C-TTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
67489728 CATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
67489775 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCA
1 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
67489824 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
67489873 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCA
1 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
67489922 CATATATACACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCA
1 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
67489971 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
67490020 CATATATA
1 CATATATA
67490028 TATCTCATAC
Statistics
Matches: 331, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 87 0.26
48 2 0.01
49 242 0.73
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (49 bp):
CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:67493990 original size:40 final size:40
Alignment explanation
Indices: 67493904--67494047 Score: 139
Period size: 40 Copynumber: 3.6 Consensus size: 40
67493894 CATTTGAATG
* * ** *
67493904 ATATCCGGGCTAAG-TCCTAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG-TT
* *
67493943 ATGTCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * ***
67493983 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* *
67494023 AAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
67494048 ATTGTGCTTG
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 13 0.15
40 73 0.83
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:67500306 original size:31 final size:31
Alignment explanation
Indices: 67500268--67500362 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
67500258 CCTTTTCATA
* *
67500268 TTTCATATTTCATAATACTGGGCTGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67500299 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
67500330 TTTCAGATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67500361 TT
1 TT
67500363 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:67500605 original size:24 final size:24
Alignment explanation
Indices: 67500554--67500672 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
67500544 GCTTTATCAT
*
67500554 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
67500579 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
67500603 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
67500626 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67500650 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67500673 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67500633 original size:47 final size:48
Alignment explanation
Indices: 67500554--67500672 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
67500544 GCTTTATCAT
*
67500554 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
67500603 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
67500650 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67500673 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:67500781 original size:20 final size:20
Alignment explanation
Indices: 67500723--67500782 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
67500713 TATGATTACC
*
67500723 TCATGTGCATATCATACACA
1 TCATGTGCATATCATACATA
*
67500743 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
67500763 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
67500783 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:67500857 original size:25 final size:25
Alignment explanation
Indices: 67500825--67500872 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67500815 ATACATAAAC
* * *
67500825 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
67500850 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
67500873 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:67502094 original size:27 final size:27
Alignment explanation
Indices: 67502033--67502096 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
67502023 GGCATATTCA
*
67502033 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGCTATTACGG
* *
67502060 TCACTTTACCCTACAAGGGCT-TTACGG
1 TCATTTTACCATAC-AGGGCTATTACGG
*
67502087 TCTTTTTACC
1 TCATTTTACC
67502097 TTTAGGGGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGCTATTACGG
Found at i:67502179 original size:27 final size:26
Alignment explanation
Indices: 67502149--67502204 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
67502139 GTAAATCAAC
*
67502149 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
67502176 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
67502202 AAA
1 AAA
67502205 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:67502296 original size:27 final size:27
Alignment explanation
Indices: 67502157--67502826 Score: 207
Period size: 27 Copynumber: 24.8 Consensus size: 27
67502147 ACAAACCAAA
* * * * *
67502157 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCGGTAATTTTATAAATCGAG
* ** * *
67502184 GGTACTTCTATAATTTTTAAAAAGTCAAG
1 GGTATTTCGGTAA-TTTTATAAA-TCGAG
* * *
67502213 GGTATTTCTGTAACTTTGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
67502240 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*
67502267 GGTATTTCGGTAATTTTGTAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * * *
67502294 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * *
67502321 GGTCAAAT-AGTAATTCTATAAATCGAG
1 GGT-ATTTCGGTAATTTTATAAATCGAG
*** * * *
67502348 GGTAAAACAGTAA-TTTGTAAATTGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * *
67502374 GGTAAAACGGTAATTCTATAAGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
67502401 GGTAAAACGATAATTATGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** * * *
67502428 GGTAAAACGGTAATTATGTAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** *
67502455 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * * *
67502482 GGTAAAAT-AGTAATTCTGTAAA-CTGAG
1 GGT-ATTTCGGTAATTTTATAAATC-GAG
** *
67502509 GGTAAAAT-GGTAATTCTATAAATCGAG
1 GGT-ATTTCGGTAATTTTATAAATCGAG
*** *
67502536 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
67502563 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
67502590 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCGGTAATTTTATAAATCGAG
** * **
67502617 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* * * *
67502644 GGTATTTCAGTAATTTCACAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
67502671 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * * *
67502698 GGTATTTTGATAATTTTACAAA-CTAAG
1 GGTATTTCGGTAATTTTATAAATC-GAG
* * *
67502725 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
67502752 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * *
67502779 GGTATTTTAGTAATTTTACAAAGC-AG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
67502805 GGTATTTTGGTAATTTTGTAAA
1 GGTATTTCGGTAATTTTATAAA
67502827 CCAAAGTATT
Statistics
Matches: 535, Mismatches: 87, Indels: 43
0.80 0.13 0.06
Matches are distributed among these distances:
26 57 0.11
27 439 0.82
28 25 0.05
29 14 0.03
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTATAAATCGAG
Found at i:67502307 original size:54 final size:54
Alignment explanation
Indices: 67502249--67502620 Score: 326
Period size: 54 Copynumber: 6.9 Consensus size: 54
67502239 GGGTATTTTG
* * * ** *
67502249 GTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAACA
* * * *
67502303 GTAATTCTGTAAATCAAGGGTCAAAT-AGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGT-AAATCGGTAATTTTATAAATCGAGGGTAAAACA
* * * * *
67502357 GTAATT-TGTAAATTGAGGGTAAAACGGTAATTCTATAAGTCGAGGGTAAAAC-
1 GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAACA
* * * * * * *
67502409 GATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACG
1 G-TAATTCTATAAATCGA-GGGTAAATCGGTAATTTTATAAATCGA-GGGTAAAACA
* * * **
67502464 GTAATTCTATAAATCGAGGGTAAAAT-AGTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGT-AAATCGGTAATTTTATAAATC-GAGGGTAAAACA
* * *
67502518 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAACA
** * * *
67502572 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTA
67502621 TTTCAATAAT
Statistics
Matches: 267, Mismatches: 38, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.01
53 47 0.18
54 207 0.78
55 9 0.03
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAACA
Found at i:67502334 original size:81 final size:81
Alignment explanation
Indices: 67502249--67502620 Score: 358
Period size: 81 Copynumber: 4.6 Consensus size: 81
67502239 GGGTATTTTG
* * ** * *
67502249 GTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTATAAATTGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
* *
67502314 AATCAAGGGTCAAATA
66 AATCGAGGGTAAAATA
* * * *
67502330 GTAATTCTATAAATCGAGGGTAAAACAGTAA-TTTGTAAATTGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTATAAATTGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
* *
67502394 AGTCGAGGGTAAAA-C
66 AATCGAGGGTAAAATA
* * * * * *
67502409 GATAATTATGTAAA-TCAGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCT
1 G-TAATTCTATAAATTGA-GGGTAAATCGGTAATTTTGTAAATCGA-GGGTAAAACGGTAATTCT
67502472 ATAAATCGAGGGTAAAATA
63 ATAAATCGAGGGTAAAATA
* * * * * *
67502491 GTAATTCTGTAAACTGAGGGTAAAAT-GGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTAC
1 GTAATTCTATAAATTGAGGGT-AAATCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAT
**
67502555 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAATA
* ** * ** *
67502572 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GTAATTCTATAAATTGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTA
67502621 TTTCAATAAT
Statistics
Matches: 241, Mismatches: 41, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.01
80 67 0.28
81 165 0.68
82 7 0.03
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTCTATAAATTGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATA
Found at i:67502727 original size:81 final size:81
Alignment explanation
Indices: 67502589--67502800 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 81
67502579 TATAAATCGA
* * * * ** *
67502589 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACAAACTCAAGGGTATTTC
*
67502652 AGTAATTTCACAAATTAG
64 AGTAATTTCACAAACTAG
**
67502670 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACT-AAGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAACTCAAGGGTATTTCA
*
67502734 GTAATTTTACAAACTAG
65 GTAATTTCACAAACTAG
* * *
67502751 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAA
67502801 GCAGGGTATT
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 1 0.01
81 106 0.94
82 6 0.05
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACTCAAGGGTATTTCAG
TAATTTCACAAACTAG
Found at i:67505493 original size:40 final size:40
Alignment explanation
Indices: 67505427--67505593 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
67505417 AAATTGAATG
* * *
67505427 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67505466 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
67505506 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
67505546 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
67505586 ATATCCGG
1 ATATCCGG
67505594 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67513364 original size:40 final size:40
Alignment explanation
Indices: 67513298--67513464 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
67513288 AAATTGAATG
* * *
67513298 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67513337 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
67513377 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
67513417 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
67513457 ATATCCGG
1 ATATCCGG
67513465 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67516530 original size:38 final size:35
Alignment explanation
Indices: 67516471--67516588 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
67516461 TCAATCATGC
*
67516471 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
67516510 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
67516541 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
67516572 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
67516589 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:67516532 original size:31 final size:31
Alignment explanation
Indices: 67516494--67516588 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
67516484 CCTTTTCATA
*
67516494 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67516525 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67516556 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67516587 TT
1 TT
67516589 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:67516831 original size:24 final size:24
Alignment explanation
Indices: 67516780--67516898 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
67516770 GCTTTATCAT
*
67516780 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
67516805 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
67516829 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
67516852 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67516876 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67516899 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67516859 original size:47 final size:48
Alignment explanation
Indices: 67516780--67516898 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
67516770 GCTTTATCAT
*
67516780 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
67516829 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
67516876 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67516899 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:67516974 original size:20 final size:20
Alignment explanation
Indices: 67516949--67517008 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
67516939 TATGATTACC
67516949 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
67516969 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
67516989 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
67517009 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:67516979 original size:11 final size:11
Alignment explanation
Indices: 67516949--67517003 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
67516939 TATGATTACC
67516949 TCATGTGCATA
1 TCATGTGCATA
*
67516960 TCA--TACATA
1 TCATGTGCATA
67516969 TCATGTGCATA
1 TCATGTGCATA
* *
67516980 TCA--TACATT
1 TCATGTGCATA
67516989 TCATGTGCATA
1 TCATGTGCATA
67517000 TCAT
1 TCAT
67517004 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:67517083 original size:25 final size:25
Alignment explanation
Indices: 67517051--67517098 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67517041 ATACATAAAC
* * *
67517051 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
67517076 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
67517099 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:67518314 original size:27 final size:27
Alignment explanation
Indices: 67518253--67518316 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
67518243 GGCATATTCA
67518253 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGG
* *
67518280 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAGGGG-TATTACGG
*
67518307 TCTTTTTACC
1 TCATTTTACC
67518317 TTTTAGGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGG
Found at i:67518398 original size:27 final size:27
Alignment explanation
Indices: 67518376--67518542 Score: 131
Period size: 27 Copynumber: 6.1 Consensus size: 27
67518366 AAAAACCAAA
* *
67518376 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCAGTAATTTTGTAAATCAAG
*
67518403 GGTACTTCTA-TAATTTT-TAAAAGTCAAG
1 GGTATTTC-AGTAATTTTGT-AAA-TCAAG
* * *
67518431 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCAGTAATTTTGTAAATCAAG
** ** **
67518458 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
* *
67518485 GGTATTTCGGTAATTTTGTAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** *
67518512 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
67518539 GGTA
1 GGTA
67518543 AAATAGTAAT
Statistics
Matches: 110, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
26 1 0.01
27 88 0.80
28 20 0.18
29 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAATCAAG
Found at i:67518543 original size:27 final size:27
Alignment explanation
Indices: 67518492--67518812 Score: 387
Period size: 27 Copynumber: 11.9 Consensus size: 27
67518482 GAGGGTATTT
*
67518492 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
67518519 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
** *
67518546 TAGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
67518573 CGGTAATTCTGTAAATTGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
67518600 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
67518627 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
* *
67518654 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
* *
67518681 CGATAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
**
67518708 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 CGGTAATTCTGTAAATC-GAGGGTAAAA
* * *
67518735 TGGTAATTCTATAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* **
67518762 CGGTAATTTTACAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
67518789 CGGTAATTCTATAAATCGAGGGTA
1 CGGTAATTCTGTAAATCGAGGGTA
67518813 CTTTGGTAAT
Statistics
Matches: 256, Mismatches: 33, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 252 0.98
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
CGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:67518849 original size:27 final size:27
Alignment explanation
Indices: 67518819--67518883 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
67518809 GGTACTTTGG
67518819 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
67518846 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
67518873 TAATTTCACAA
1 TAATTTTACAA
67518884 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:67518892 original size:27 final size:27
Alignment explanation
Indices: 67518862--67519040 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
67518852 TACAGGTCGA
** * *
67518862 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
67518889 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
67518916 GGGTATTTTGATAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
67518943 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
67518970 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
67518997 GGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTTACAAA-CTAG
67519023 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
67519041 GTAAACCAAA
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 17 0.12
27 119 0.87
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:67518946 original size:81 final size:81
Alignment explanation
Indices: 67518808--67519019 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 81
67518798 TATAAATCGA
* * * * ** *
67518808 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACAAACTCAAGGGTATTTC
*
67518871 AGTAATTTCACAAATTAG
64 AGTAATTTCACAAACTAG
**
67518889 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACT-AAGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAACTCAAGGGTATTTCA
*
67518953 GTAATTTTACAAACTAG
65 GTAATTTCACAAACTAG
* * *
67518970 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAA
67519020 GCAGGGTATT
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 1 0.01
81 106 0.94
82 6 0.05
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACTCAAGGGTATTTCAG
TAATTTCACAAACTAG
Found at i:67522444 original size:40 final size:40
Alignment explanation
Indices: 67522382--67522486 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
67522372 CATTTGAATG
* * * *
67522382 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TT
* *
67522422 ATGTCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
67522462 ATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
67522487 ATGGTGCAAG
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 55 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
Found at i:67527025 original size:5 final size:5
Alignment explanation
Indices: 67527015--67527039 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
67527005 TGGCTCATTT
67527015 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
67527040 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:67531655 original size:22 final size:22
Alignment explanation
Indices: 67531605--67531660 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
67531595 GCACTAAGTC
* *
67531605 AACATGACGGCTCAACGCCGTA
1 AACAGGACGGCTCAACACCGTA
* *
67531627 GACAGGATGGCTCAACACCGTA
1 AACAGGACGGCTCAACACCGTA
*
67531649 AATAGGACGGCT
1 AACAGGACGGCT
67531661 AAAGGCAATA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.14
Consensus pattern (22 bp):
AACAGGACGGCTCAACACCGTA
Found at i:67534973 original size:22 final size:22
Alignment explanation
Indices: 67534917--67535011 Score: 91
Period size: 22 Copynumber: 4.3 Consensus size: 22
67534907 CACTAAGTTA
* * *
67534917 ACAGGACGGCTCACCGTCGTAG
1 ACAGGACGACTCAACGCCGTAG
* * *
67534939 GCAAGACAACTCAACGCCGTAG
1 ACAGGACGACTCAACGCCGTAG
* *
67534961 ACAGGACGGCTCAACGCTGTAG
1 ACAGGACGACTCAACGCCGTAG
* * *
67534983 ACAGGATGACTTAACGCCATAG
1 ACAGGACGACTCAACGCCGTAG
67535005 ACAGGAC
1 ACAGGAC
67535012 AGCTAAAGGC
Statistics
Matches: 56, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 56 1.00
ACGTcount: A:0.32, C:0.28, G:0.27, T:0.13
Consensus pattern (22 bp):
ACAGGACGACTCAACGCCGTAG
Found at i:67540016 original size:39 final size:38
Alignment explanation
Indices: 67539968--67540055 Score: 97
Period size: 39 Copynumber: 2.3 Consensus size: 38
67539958 GTTAACCAAT
* *
67539968 TCAAAATGATCTT-AATTAAGTTAAAATAATTTTAACACC
1 TCAAAATGATCTTCAA--AAGTTAAAATAATTGTAACACA
* * *
67540007 TCAAAATGATTTTTCAAAAGTTAAATTCATTGTAACACA
1 TCAAAATGA-TCTTCAAAAGTTAAAATAATTGTAACACA
67540046 TCAAAATGAT
1 TCAAAATGAT
67540056 TTTTCAAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
38 1 0.02
39 36 0.86
40 3 0.07
41 2 0.05
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (38 bp):
TCAAAATGATCTTCAAAAGTTAAAATAATTGTAACACA
Found at i:67540056 original size:39 final size:39
Alignment explanation
Indices: 67539985--67540063 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
67539975 GATCTTAATT
* *
67539985 AAGTTAAAATAATTTTAACACCTCAAAATGATTTTTCAA
1 AAGTTAAAATAATTGTAACACATCAAAATGATTTTTCAA
* *
67540024 AAGTTAAATTCATTGTAACACATCAAAATGATTTTTCAA
1 AAGTTAAAATAATTGTAACACATCAAAATGATTTTTCAA
67540063 A
1 A
67540064 TAAGTCAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (39 bp):
AAGTTAAAATAATTGTAACACATCAAAATGATTTTTCAA
Found at i:67552554 original size:18 final size:19
Alignment explanation
Indices: 67552527--67552564 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
67552517 TTTATATTTT
67552527 TAAATAATTTTGGGTAAAA
1 TAAATAATTTTGGGTAAAA
*
67552546 TAAAT-ATTTTGGGTCAAA
1 TAAATAATTTTGGGTAAAA
67552564 T
1 T
67552565 TAGAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.42, C:0.03, G:0.16, T:0.39
Consensus pattern (19 bp):
TAAATAATTTTGGGTAAAA
Found at i:67555656 original size:35 final size:35
Alignment explanation
Indices: 67555610--67555687 Score: 156
Period size: 35 Copynumber: 2.2 Consensus size: 35
67555600 GATTGACACT
67555610 GATACTGTGATGGGCTAAGGCCCTACTGCATATTC
1 GATACTGTGATGGGCTAAGGCCCTACTGCATATTC
67555645 GATACTGTGATGGGCTAAGGCCCTACTGCATATTC
1 GATACTGTGATGGGCTAAGGCCCTACTGCATATTC
67555680 GATACTGT
1 GATACTGT
67555688 ACTGAGATGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (35 bp):
GATACTGTGATGGGCTAAGGCCCTACTGCATATTC
Found at i:67555702 original size:40 final size:39
Alignment explanation
Indices: 67555592--67555707 Score: 152
Period size: 35 Copynumber: 3.0 Consensus size: 39
67555582 TGTTACTAAA
*
67555592 TACTGCATGATT-GACACTGATACTGTGATGGGCTAAGGCCC
1 TACTGCAT-ATTCGATACTG-TACTG-GATGGGCTAAGGCCC
67555633 TACTGCATATTCGATACTG---T-GATGGGCTAAGGCCC
1 TACTGCATATTCGATACTGTACTGGATGGGCTAAGGCCC
67555668 TACTGCATATTCGATACTGTACTGAGATGGGCTAAGGCCC
1 TACTGCATATTCGATACTGTACTG-GATGGGCTAAGGCCC
67555708 AAACTGTTAC
Statistics
Matches: 68, Mismatches: 1, Indels: 13
0.83 0.01 0.16
Matches are distributed among these distances:
35 34 0.50
37 1 0.01
38 1 0.01
40 18 0.26
41 14 0.21
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
TACTGCATATTCGATACTGTACTGGATGGGCTAAGGCCC
Found at i:67556520 original size:25 final size:25
Alignment explanation
Indices: 67556476--67556523 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67556466 TTTTTTTAAA
* *
67556476 CTGAAACTATTATTGATAGTATATT
1 CTGAAACTACTATAGATAGTATATT
*
67556501 CTGAAACTACTATAGGTAGTATA
1 CTGAAACTACTATAGATAGTATA
67556524 CTGTACTGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
CTGAAACTACTATAGATAGTATATT
Found at i:67556532 original size:28 final size:26
Alignment explanation
Indices: 67556475--67556534 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
67556465 ATTTTTTTAA
* *
67556475 ACTGAAACTATTATTGATAGTATATT
1 ACTGAAACTACTATAGATAGTATATT
*
67556501 -CTGAAACTACTATAGGTAGTATACTGT
1 ACTGAAACTACTATAGATAGTATA-T-T
67556528 ACTGAAA
1 ACTGAAA
67556535 GCACTTTAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 20 0.71
26 1 0.04
27 1 0.04
28 6 0.21
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (26 bp):
ACTGAAACTACTATAGATAGTATATT
Found at i:67562483 original size:46 final size:46
Alignment explanation
Indices: 67562433--67562608 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
67562423 TATTTGGGCA
67562433 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
67562479 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
67562526 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
67562572 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67562609 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:67562588 original size:93 final size:93
Alignment explanation
Indices: 67562429--67562600 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
67562419 TGGATATTTG
* *
67562429 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67562494 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
67562522 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67562587 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
67562601 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:67571835 original size:46 final size:45
Alignment explanation
Indices: 67571785--67571959 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
67571775 TGGTTGAGCA
*
67571785 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * *
67571831 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
*
67571876 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * *
67571924 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
67571960 GGCGGGTTAC
Statistics
Matches: 109, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:67571941 original size:93 final size:93
Alignment explanation
Indices: 67571782--67571952 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
67571772 GGATGGTTGA
* * * *
67571782 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCATTGAGT
*
67571847 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
67571875 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCATTGAGT
67571940 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67571953 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67573715 original size:37 final size:37
Alignment explanation
Indices: 67573636--67573718 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
67573626 AACCTTTAGT
* * *
67573636 TCGGGGCTTACCCAGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCA
* *
67573673 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCA
67573710 TCGGGTCTT
1 TCGGGTCTT
67573719 TAGAGCTCGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCA
Found at i:67573905 original size:47 final size:47
Alignment explanation
Indices: 67573836--67574414 Score: 978
Period size: 47 Copynumber: 12.3 Consensus size: 47
67573826 CCCTTCGGGA
* * * * *
67573836 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67573883 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67573930 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67573977 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67574024 CTTCTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67574071 CTTGTCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67574118 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67574165 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67574212 CTTGTCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67574259 CTTGTCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67574306 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67574353 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67574400 CTTATCACATATATA
1 CTTATCACATATATA
67574415 TATCTCATAC
Statistics
Matches: 510, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 510 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67578633 original size:316 final size:316
Alignment explanation
Indices: 67577971--67578918 Score: 1758
Period size: 316 Copynumber: 3.0 Consensus size: 316
67577961 GTGCATGGTA
* * *
67577971 CACTGAGTTCGTTCGTATGAACCCAAATGTATGACCTCCCCCACCTCCCCCAATTCCTCAACCTA
1 CACTGAGTTCGTTCGTACGAACCCAAATGTACGACCTCCTCCACCTCCCCCAATTCCTCAACCTA
* * *
67578036 TGCCTCCGATGCCTTAGGGAGTGGATATGATAAAATTTCACAGAACCCCTGTTGACAGAATTCGT
66 TGCCTCCGATGCCTCAAGGAGTGGATATGATAAAATTTCACAGAACCCC-ATTGACAGAATTCGT
*
67578101 AAACAAGGGGCTGAAGAATTTAGAGAAAATATTGATGATGATGCAGAGAAAGCAGAGTTCTGGCT
130 AAACAAGGGGCTGAAGAATTTAGAGCAAATATTGATGATGATGCAGAGAAAGCAGAGTTCTGGCT
* *
67578166 TGAAAATTCTATCAGGGTATTTGATGAATTATCTTGTACACCTGAAGATGTTTGAAATGTGCTAC
195 TGAAAATTTTATCCGGGTATTTGATGAATTATCTTGTACACCTGAAGATGTTTGAAATGTGCTAC
67578231 ATCTTTGTTGAGAGATTCAGCCTATAATTGGTGGAAGACTTTGATTTCGGTGGTACC
260 ATCTTTGTTGAGAGATTCAGCCTATAATTGGTGGAAGACTTTGATTTCGGTGGTACC
67578288 CACTGAGTTCGTTCGTACGAACCCAAATGTACGACCTCCTCCACCTCCCCCAATTCCTCAACCTA
1 CACTGAGTTCGTTCGTACGAACCCAAATGTACGACCTCCTCCACCTCCCCCAATTCCTCAACCTA
67578353 TGCCTCCGATGCCTCAAGGAGTGGATATGATAAAATTTCACAGAACCCCATTGACAG-ATTCGTA
66 TGCCTCCGATGCCTCAAGGAGTGGATATGATAAAATTTCACAGAACCCCATTGACAGAATTCGTA
67578417 AACAAGGGGCTGAAGAATTTAGAGCAAATATTGATGATGATGCAGAGAAAGCAGAGTTCTGGCTT
131 AACAAGGGGCTGAAGAATTTAGAGCAAATATTGATGATGATGCAGAGAAAGCAGAGTTCTGGCTT
67578482 GAAAATTTTATCCGGGTATTTGATGAATTATCTTGTACACCTGAAGAGTGTTTGAAATGTGCTAC
196 GAAAATTTTATCCGGGTATTTGATGAATTATCTTGTACACCTGAAGA-TGTTTGAAATGTGCTAC
67578547 ATCTTTGTTGAGAGATTCAGCCTATAATTGGTGGAAGACTTTGATTTCGGTGGTACC
260 ATCTTTGTTGAGAGATTCAGCCTATAATTGGTGGAAGACTTTGATTTCGGTGGTACC
67578604 CACTGAGTTCGTTCGTACGAACCCAAATGTACGACCTCCTCCACCTCCCCCAATTCCTCAACCTA
1 CACTGAGTTCGTTCGTACGAACCCAAATGTACGACCTCCTCCACCTCCCCCAATTCCTCAACCTA
67578669 TGCCTCCGATGCCTCAAGGAGTGGATATGATAAAATTTCACAGAACCCCCATTGACAGAATTCGT
66 TGCCTCCGATGCCTCAAGGAGTGGATATGATAAAATTTCACAGAA-CCCCATTGACAGAATTCGT
67578734 AAACAAGGGGCTGAAGAATTTAGAGCAAATATTGATGATGATGCAGAGAAAGCA-AGTTCTGGCT
130 AAACAAGGGGCTGAAGAATTTAGAGCAAATATTGATGATGATGCAGAGAAAGCAGAGTTCTGGCT
67578798 TGAAAA-TTTATCCGGGTATTTGATGAATTATCTTGTACACCTGAAGAATGTTTGAAATGTGCTA
195 TGAAAATTTTATCCGGGTATTTGATGAATTATCTTGTACACCTGAAG-ATGTTTGAAATGTGCTA
67578862 CATCTTTGTTGAGAGATTCAGCCTATAATTGGTGGAAGACTTTGATTTCGGTGGTAC
259 CATCTTTGTTGAGAGATTCAGCCTATAATTGGTGGAAGACTTTGATTTCGGTGGTAC
67578919 GAAAGAGAGG
Statistics
Matches: 618, Mismatches: 9, Indels: 9
0.97 0.01 0.01
Matches are distributed among these distances:
315 116 0.19
316 304 0.49
317 138 0.22
318 60 0.10
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (316 bp):
CACTGAGTTCGTTCGTACGAACCCAAATGTACGACCTCCTCCACCTCCCCCAATTCCTCAACCTA
TGCCTCCGATGCCTCAAGGAGTGGATATGATAAAATTTCACAGAACCCCATTGACAGAATTCGTA
AACAAGGGGCTGAAGAATTTAGAGCAAATATTGATGATGATGCAGAGAAAGCAGAGTTCTGGCTT
GAAAATTTTATCCGGGTATTTGATGAATTATCTTGTACACCTGAAGATGTTTGAAATGTGCTACA
TCTTTGTTGAGAGATTCAGCCTATAATTGGTGGAAGACTTTGATTTCGGTGGTACC
Done.