Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 219 of 438
Found at i:67583972 original size:46 final size:46
Alignment explanation
Indices: 67583922--67584047 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
67583912 TGGTTGAGCA
* *
67583922 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
67583968 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
67584014 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67584048 GGGGCAGGTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:67585877 original size:50 final size:50
Alignment explanation
Indices: 67585800--67585942 Score: 211
Period size: 48 Copynumber: 2.9 Consensus size: 50
67585790 AGGGTAAGAT
*
67585800 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAG
* * * *
67585849 TGTCGATGCCATGTCCCAAACATGGTCTTACACTAG--CTCACATGTCGAG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAG
67585898 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA
67585943 AATGTCGTGT
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
48 42 0.52
49 1 0.01
50 38 0.47
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAG
Found at i:67588372 original size:18 final size:18
Alignment explanation
Indices: 67588360--67588543 Score: 135
Period size: 19 Copynumber: 9.9 Consensus size: 18
67588350 TATCATAACT
*
67588360 AGAATCATAATCAGAATC
1 AGAATCAGAATCAGAATC
*
67588378 AGAATCAGAATCAGAATT
1 AGAATCAGAATCAGAATC
* *
67588396 AG-GTGACAGAATCAAAATC
1 AGAAT--CAGAATCAGAATC
* *
67588415 AGAACCAGAATCAGAATT
1 AGAATCAGAATCAGAATC
67588433 AGGTAA-CAGAATCAGAATC
1 A-G-AATCAGAATCAGAATC
* *
67588452 AGTATCAGGTAA-CAAAATC
1 AGAATCA-G-AATCAGAATC
* *
67588471 AGAATCAGAACCAAAATC
1 AGAATCAGAATCAGAATC
*
67588489 AGAATTAGGTAAT-AGAATC
1 AGAATCA-G-AATCAGAATC
*
67588508 AGAATCAGTATCAGGTAA-C
1 AGAATCAGAATCA-G-AATC
67588527 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
67588544 GTGAATGCAA
Statistics
Matches: 132, Mismatches: 19, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
17 8 0.06
18 50 0.38
19 66 0.50
20 8 0.06
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (18 bp):
AGAATCAGAATCAGAATC
Found at i:67588377 original size:6 final size:6
Alignment explanation
Indices: 67588360--67588543 Score: 135
Period size: 6 Copynumber: 29.8 Consensus size: 6
67588350 TATCATAACT
* * *
67588360 AGAATC ATAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
67588409 AAAATC AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* * * *
67588458 AGGTAA-C AAAATC AGAATC AGAACC AAAATC AGAATT AGGTAAT- AGAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
67588508 AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
67588544 GTGAATGCAA
Statistics
Matches: 140, Mismatches: 23, Indels: 30
0.73 0.12 0.16
Matches are distributed among these distances:
5 10 0.07
6 110 0.79
7 12 0.09
8 8 0.06
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:67588418 original size:37 final size:37
Alignment explanation
Indices: 67588368--67588521 Score: 152
Period size: 37 Copynumber: 4.5 Consensus size: 37
67588358 CTAGAATCAT
*
67588368 AATCAGAATCAGAATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGAATCAGAATTAGGTAACAG
* *
67588405 AATCAAAATCAGAACCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGAATTAGGTAACAG
*
67588442 AATCAGAATCAG--T----ATC------AGGTAACAA
1 AATCAGAATCAGAATCAGAATCAGAATTAGGTAACAG
* * *
67588467 AATCAGAATCAGAACCAAAATCAGAATTAGGTAATAG
1 AATCAGAATCAGAATCAGAATCAGAATTAGGTAACAG
*
67588504 AATCAGAATCAGTATCAG
1 AATCAGAATCAGAATCAG
67588522 GTAACAGAAT
Statistics
Matches: 93, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
25 20 0.22
31 6 0.06
37 67 0.72
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGAATTAGGTAACAG
Found at i:67588442 original size:25 final size:25
Alignment explanation
Indices: 67588414--67588480 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
67588404 GAATCAAAAT
* *
67588414 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
67588439 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
67588464 CAAAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
67588481 CCAAAATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.16
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:67588450 original size:62 final size:62
Alignment explanation
Indices: 67588377--67588542 Score: 269
Period size: 62 Copynumber: 2.7 Consensus size: 62
67588367 TAATCAGAAT
* * * * *
67588377 CAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAGAATTAGGTAA
*
67588439 CAGAATCAGAATCAGTATCAGGTAACAAAATCAGAATCAGAACCAAAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAGAATTAGGTAA
*
67588501 TAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
67588543 TGTGAATGCA
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 96 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAGAATTAGGTAA
Found at i:67588513 original size:25 final size:25
Alignment explanation
Indices: 67588476--67588543 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
67588466 AAATCAGAAT
* * *
67588476 CAGAACCAAAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
67588501 TAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
67588526 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
67588544 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:67588704 original size:27 final size:26
Alignment explanation
Indices: 67588662--67588713 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
67588652 GCGAGGCTGC
*
67588662 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
67588688 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
67588714 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67589016 original size:53 final size:52
Alignment explanation
Indices: 67588959--67589231 Score: 278
Period size: 53 Copynumber: 5.1 Consensus size: 52
67588949 GGGCAAAATG
* * * * * *
67588959 GTAATTTTACCCCACAAGGTATCTCGGTAGTTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTTA
* **
67589012 GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGC
1 GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTA
* *
67589064 GATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTCA
1 G-TAATTCTACCCTACA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTA
* ** *
67589118 GTAATTCTACCTTACTAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTTA
* * * * * *
67589172 GTAATTTTACAAACTA-GGGGTGTTTTGGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTAC--CCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT-A
67589226 GTAATT
1 GTAATT
67589232 TCACAATCGA
Statistics
Matches: 186, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
52 3 0.02
53 100 0.54
54 81 0.44
56 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (52 bp):
GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTA
Found at i:67589023 original size:27 final size:27
Alignment explanation
Indices: 67588993--67589231 Score: 256
Period size: 27 Copynumber: 8.9 Consensus size: 27
67588983 CGGTAGTTCC
67588993 ACCCTACAGGGGTATTTTAGTAATTCT
1 ACCCTACAGGGGTATTTTAGTAATTCT
**
67589020 ACCCTACA-GGGTATTTCGGTAATTCT
1 ACCCTACAGGGGTATTTTAGTAATTCT
* **
67589046 ACCCTATAGGGGTA-TTGCGATAATTCT
1 ACCCTACAGGGGTATTTTAG-TAATTCT
*
67589073 ACCCTACAGGGGTA-TTTCGATAATTCT
1 ACCCTACAGGGGTATTTTAG-TAATTCT
*
67589100 ACCCTACAGGGGTA-TTCAGTAATTCT
1 ACCCTACAGGGGTATTTTAGTAATTCT
*
67589126 ACCTTACTA-GGGTATTTTAGTAATTCT
1 ACCCTAC-AGGGGTATTTTAGTAATTCT
* *
67589153 ACCCTACAAGGGTATTTTAGTAATTTT
1 ACCCTACAGGGGTATTTTAGTAATTCT
** * *
67589180 A-CAAACTAGGGGTGTTTTGGTAATTCT
1 ACCCTAC-AGGGGTATTTTAGTAATTCT
* *
67589207 ACCCTATAGGGGTATTTCAGTAATT
1 ACCCTACAGGGGTATTTTAGTAATT
67589232 TCACAATCGA
Statistics
Matches: 180, Mismatches: 25, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
26 48 0.27
27 130 0.72
28 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
ACCCTACAGGGGTATTTTAGTAATTCT
Found at i:67589097 original size:80 final size:80
Alignment explanation
Indices: 67588976--67589231 Score: 274
Period size: 80 Copynumber: 3.2 Consensus size: 80
67588966 TACCCCACAA
* *
67588976 GGTATCTCG-GTAGTTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGTATTTCGGT
1 GGTAT-TCGAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGTATTTCGGT
67589040 AATTCTACCCTATAGG
65 AATTCTACCCTATAGG
* *
67589056 GGTATTGCGA-TAATTCTACCCTACAGGGGTA-TTTCGATAATTCTACCCTACAGGGGTA-TTCA
1 GGTATT-CGAGTAATTCTACCCTACAGGGGTATTTTAG-TAATTCTACCCTACA-GGGTATTTCG
*
67589118 GTAATTCTACCTTACTA-G
63 GTAATTCTACCCTA-TAGG
** * * * * * *
67589136 GGTATTTTAGTAATTCTACCCTACAAGGGTATTTTAGTAATTTTACAAACTA-GGGGTGTTTTGG
1 GGTATTCGAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC--CCTACAGGGTATTTCGG
67589200 TAATTCTACCCTATAGG
64 TAATTCTACCCTATAGG
67589217 GGTATTTC-AGTAATT
1 GGTA-TTCGAGTAATT
67589232 TCACAATCGA
Statistics
Matches: 147, Mismatches: 17, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.04
80 98 0.67
81 38 0.26
82 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (80 bp):
GGTATTCGAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGTATTTCGGTA
ATTCTACCCTATAGG
Found at i:67589266 original size:27 final size:27
Alignment explanation
Indices: 67589236--67589650 Score: 235
Period size: 27 Copynumber: 15.4 Consensus size: 27
67589226 GTAATTTCAC
* * *
67589236 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
67589263 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
67589290 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* ***** *
67589317 AATCGAGGGTACTTTGGTAATT-TTTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * ***
67589343 CCAGTCGAGGGTATTTCAGTAATTAC---A
1 --AATCAAGGGTAAAACAGTAATT-CTGTA
* **** * **
67589370 AATCAGGGGTATTTTAGTAATTTTACA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * **** * *
67589397 AACCAGGGGTATTTTAGTAATTTTCTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
** *
67589424 AATCAAGGGTAAAATGGTAATTCTCTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* ** *
67589451 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
** * *
67589478 AATTGAGGGTAGAACGGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
67589505 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
67589532 ATTCAAGGGTAAAATAGTAACTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
67589559 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
67589586 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
** ** *
67589613 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
67589640 AATCGAGGGTA
1 AATCAAGGGTA
67589651 CTTTGATAAT
Statistics
Matches: 325, Mismatches: 56, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
25 18 0.06
26 3 0.01
27 286 0.88
28 18 0.06
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTCTGTA
Found at i:67589310 original size:54 final size:54
Alignment explanation
Indices: 67589236--67589650 Score: 347
Period size: 54 Copynumber: 7.7 Consensus size: 54
67589226 GTAATTTCAC
** *
67589236 AATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* * * * *** * *
67589290 AATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* ** ** * ***
67589343 CCAGTCGAGGGT-ATTTCAGTAA--TTACAAATCAGGGGTATTTTAGTAATT-T-TA
1 --AATCGAGGGTAAAAT-AGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* * *** * * *
67589395 CAAACCAGGGGTATTTTAGTAATTTTCTAAATCAAGGGTAAAATGGTAATTCTCTA
1 -AATCGA-GGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* * * ** * **
67589451 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* *
67589505 AATCGAGGGTAAAATAGTAATTTTGTAATTCAAGGGTAAAATAGTAACTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* *
67589559 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* * *
67589613 AATTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTA
67589651 CTTTGATAAT
Statistics
Matches: 290, Mismatches: 62, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
51 4 0.01
52 11 0.04
53 28 0.10
54 227 0.78
55 18 0.06
56 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (54 bp):
AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
Found at i:67589340 original size:81 final size:81
Alignment explanation
Indices: 67589251--67589663 Score: 377
Period size: 81 Copynumber: 5.1 Consensus size: 81
67589241 AGGGTAAAAC
*
67589251 GGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
1 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
67589316 AAATCGAGGGTACTTT
66 AAATCGAGGGTACTTT
* *** * *** *
67589332 GGTAATTTT-TACCAGTCGAGGGTATTTCAGTAATTAC---AAATCAGGGGTATTTTAGTAATTT
1 GGTAATTTTGTA--AATCGAGGGTAAAACAGTAATT-CTGTAAATCAAGGGTAAAATAGTAATTC
* * *
67589393 TACAAA-CCAGGGGTATTTT
63 TATAAATCGA-GGGTACTTT
* * * ** * * *
67589412 AGTAATTTTCTAAATCAAGGGTAAAATGGTAATTCTCTAAATCGAGGGTAAAATGGTAATTCTAT
1 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
* ****
67589477 AAATTGAGGGTAGAAC
66 AAATCGAGGGTACTTT
* * * * * *
67589493 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAATTCAAGGGTAAAATAGTAACTCTGT
1 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
***
67589558 AAATCGAGGGTAAAAT
66 AAATCGAGGGTACTTT
* ** * * *
67589574 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAATGGTAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
67589639 AAATCGAGGGTACTTT
66 AAATCGAGGGTACTTT
*
67589655 GATAATTTT
1 GGTAATTTT
67589664 ACATGTCGAG
Statistics
Matches: 258, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
78 1 0.00
79 17 0.07
80 42 0.16
81 179 0.69
82 18 0.07
83 1 0.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
AAATCGAGGGTACTTT
Found at i:67589660 original size:27 final size:26
Alignment explanation
Indices: 67589576--67589771 Score: 115
Period size: 27 Copynumber: 7.3 Consensus size: 26
67589566 GGTAAAATAG
****
67589576 TAATTTTGTAAATCGAGGGTAAAACA
1 TAATTTTGTAAATCGAGGGTATTTGA
* * ** *
67589602 GTAATTCTGTAAATTGAGGGTAAAATGG
1 -TAATTTTGTAAATCGAGGGT-ATTTGA
67589630 TAATTTTGTAAATCGAGGGTACTTTGA
1 TAATTTTGTAAATCGAGGGTA-TTTGA
** ** *
67589657 TAATTTTACATGTCGAGGGTATTTCAA
1 TAATTTTGTAAATCGAGGGTATTT-GA
*
67589684 TAATTTTGCAAA-CTGAGGGTATTTCGA
1 TAATTTTGTAAATC-GAGGGTATTT-GA
** * *
67589711 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTGTAAATCGAGGGTATTT-GA
* * *
67589738 TAATTTTATAAACCGAGGGTACTTTGG
1 TAATTTTGTAAATCGAGGGTA-TTTGA
67589765 TAATTTT
1 TAATTTT
67589772 ACAACTTAGG
Statistics
Matches: 137, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
26 5 0.04
27 125 0.91
28 7 0.05
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (26 bp):
TAATTTTGTAAATCGAGGGTATTTGA
Found at i:67589675 original size:54 final size:52
Alignment explanation
Indices: 67589561--67589774 Score: 130
Period size: 54 Copynumber: 4.0 Consensus size: 52
67589551 ACTCTGTAAA
**** *
67589561 TCGAGGGTAAAAT-AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAAT
1 TCGAGGGT-AAATCAGTAATTTTGTAAATCGAGGGTATTTGA-TAATT-T-TACAT
*
67589616 T-GAGGGTAAAAT-GGTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACAT
1 TCGAGGGT-AAATCAGTAATTTTGTAAATCGAGGGTA-TTTGATAATTTTACAT
** * * *
67589668 GTCGAGGGTATTTCAATAATTTTGCAAA-CTGAGGGTATTTCGATAATTTTACAAA
1 -TCGAGGGTAAATCAGTAATTTTGTAAATC-GAGGGTATTT-GATAATTTTAC-AT
* ** ** * * *
67589723 TCGAGGATATTTGGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACA
1 TCGAGGGTAAATCAGTAATTTTGTAAATCGAGGGTA-TTTGATAATTTTACA
67589775 ACTTAGGATA
Statistics
Matches: 131, Mismatches: 19, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
52 4 0.03
53 9 0.07
54 111 0.85
55 7 0.05
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (52 bp):
TCGAGGGTAAATCAGTAATTTTGTAAATCGAGGGTATTTGATAATTTTACAT
Found at i:67589772 original size:27 final size:27
Alignment explanation
Indices: 67589630--67589775 Score: 136
Period size: 27 Copynumber: 5.4 Consensus size: 27
67589620 GGTAAAATGG
**
67589630 TAATTTTGTAAATCGAGGGTACTTT-GA
1 TAATTTTACAAATCGAGGGTA-TTTCGA
** *
67589657 TAATTTTACATGTCGAGGGTATTTCAA
1 TAATTTTACAAATCGAGGGTATTTCGA
*
67589684 TAATTTTGCAAA-CTGAGGGTATTTCGA
1 TAATTTTACAAATC-GAGGGTATTTCGA
* * *
67589711 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCGAGGGTATTTCGA
* * *
67589738 TAATTTTATAAACCGAGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCGA
67589765 TAATTTTACAA
1 TAATTTTACAA
67589776 CTTAGGATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
26 4 0.04
27 90 0.92
28 4 0.04
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCGA
Found at i:67589775 original size:54 final size:54
Alignment explanation
Indices: 67589628--67589803 Score: 194
Period size: 54 Copynumber: 3.3 Consensus size: 54
67589618 AGGGTAAAAT
* ** *
67589628 GGTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTC
1 GGTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTC
** * * *
67589682 AATAATTTTGCAAACTGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTG
1 GGTAATTTTGTAAACCGAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTC
* * * *
67589736 GGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAACT-TAGGATATTTC
1 GGTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTC
* *
67589789 AGTAATTTGGTAAAC
1 GGTAATTTTGTAAAC
67589804 TAAAGTATTC
Statistics
Matches: 99, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
53 24 0.24
54 72 0.73
55 3 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTC
Found at i:67590792 original size:48 final size:48
Alignment explanation
Indices: 67590642--67590828 Score: 207
Period size: 48 Copynumber: 3.9 Consensus size: 48
67590632 TGTTACATGT
* * * * *
67590642 CGATTCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATATCGGGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC--TCACATATAGAGGC
* *
67590692 CGATGCCATGTTCCAAACATGGTCTTACACTAG-TCCACATGTCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCT-CACATATAGAGGC
* * * * *
67590740 CGATGCCATG-TCTCAGACATGGTCTTACACTAGCTCTCATATAAATGT
1 CGATGCCATGTTC-CAAACATGGTCTTACACTAGCTCACATATAGAGGC
*
67590788 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
67590829 ACCCTAGTAT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
47 3 0.03
48 81 0.69
49 3 0.03
50 31 0.26
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAGAGGC
Found at i:67599244 original size:40 final size:40
Alignment explanation
Indices: 67599170--67599391 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
67599160 AACCCAAGTA
* * *
67599170 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
67599209 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
67599249 CCTTCGGGACTTAGCCCGGATACAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
67599289 CCTTTGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
67599329 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
67599369 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67599392 CATTCGAATA
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 12 0.07
40 148 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:67608492 original size:15 final size:13
Alignment explanation
Indices: 67608461--67608485 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67608451 TATTTAGAAA
67608461 TTATTTTGTGTGT
1 TTATTTTGTGTGT
67608474 TTATTTTGTGTG
1 TTATTTTGTGTG
67608486 AATTTATATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:67609472 original size:24 final size:24
Alignment explanation
Indices: 67609373--67609473 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
67609363 AAGTCTGTCA
*
67609373 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
67609397 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
67609421 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
67609445 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
67609469 GGAGA
1 GGAGA
67609474 ACAAGGTTGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.33, C:0.02, G:0.41, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:67610918 original size:27 final size:27
Alignment explanation
Indices: 67610878--67610988 Score: 152
Period size: 27 Copynumber: 4.1 Consensus size: 27
67610868 AGGAAGCGTC
* * *
67610878 CTGGTGGCTATGCCACATTTATTTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
67610905 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
67610932 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
67610959 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
67610985 CTGG
1 CTGG
67610989 CAGCAATGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
26 13 0.17
27 63 0.83
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:67620986 original size:46 final size:48
Alignment explanation
Indices: 67620914--67621017 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 48
67620904 GACAGGACAG
* * *
67620914 GACAGAAATGAGCCATGTAAGTCC-ATAT-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCAATATACAGATATATGGCATTGGA
* *
67620960 GACAGGAATGAGCCATGTAAGCCCATATATATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCA-ATATACAGATATATGGCATTGGA
67621009 GACAGGAAT
1 GACAGGAAT
67621018 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
46 22 0.44
48 4 0.08
49 24 0.48
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCAATATACAGATATATGGCATTGGA
Found at i:67625322 original size:51 final size:46
Alignment explanation
Indices: 67625233--67625338 Score: 131
Period size: 46 Copynumber: 2.2 Consensus size: 46
67625223 GACAGGACAG
* * *
67625233 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
*
67625279 GACAGGAATGAGCCATGTAAGCCCATATTAGTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAG-----ATATATGGCATTGGA
67625330 GACAGGAAT
1 GACAGGAAT
67625339 AATTCATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
46 28 0.55
51 23 0.45
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
Found at i:67633538 original size:40 final size:40
Alignment explanation
Indices: 67633453--67633603 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
67633443 AATTGAATGA
* * * **
67633453 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
67633493 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
67633534 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
67633573 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
67633604 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:67633617 original size:40 final size:40
Alignment explanation
Indices: 67633490--67633619 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
67633480 ATGCTGGAAA
* * *
67633490 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
67633530 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
67633570 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
67633610 TTATATCCGG
1 TTATATCCGG
67633620 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:67641578 original size:40 final size:40
Alignment explanation
Indices: 67641478--67641580 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 40
67641468 ATTGAATGAT
* * * *
67641478 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACTAC
* * ***
67641518 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACTAC
67641558 ATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
67641581 TTTGAGCACA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.29, C:0.25, G:0.27, T:0.18
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACTAC
Found at i:67648764 original size:40 final size:40
Alignment explanation
Indices: 67648673--67648933 Score: 246
Period size: 40 Copynumber: 6.5 Consensus size: 40
67648663 CTCAAGAAAT
* * * *
67648673 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * * * *
67648711 CTTTGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATAC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
67648751 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
67648791 CTTC-GGATTTTAGCCCGGGTATAATCACTAGCACAAATGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
67648831 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
67648871 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
*
67648912 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
67648934 CATTCGAATA
Statistics
Matches: 177, Mismatches: 36, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
38 10 0.06
39 19 0.11
40 117 0.66
41 28 0.16
42 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:67653817 original size:40 final size:40
Alignment explanation
Indices: 67653772--67653939 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
67653762 TCGGATACAA
67653772 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
67653812 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
67653852 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
67653892 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
67653932 CCGGATAT
1 CCGGATAT
67653940 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:67653912 original size:80 final size:80
Alignment explanation
Indices: 67653772--67653939 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
67653762 TCGGATACAA
* *
67653772 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
67653837 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
67653852 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
67653915 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
67653932 CCGGATAT
1 CCGGATAT
67653940 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:67661708 original size:40 final size:40
Alignment explanation
Indices: 67661663--67661830 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
67661653 TCGGATACAA
67661663 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
67661703 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
67661743 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
67661783 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
67661823 CCGGATAT
1 CCGGATAT
67661831 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:67661803 original size:80 final size:80
Alignment explanation
Indices: 67661663--67661830 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
67661653 TCGGATACAA
* *
67661663 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
67661728 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
67661743 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
67661806 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
67661823 CCGGATAT
1 CCGGATAT
67661831 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:67665049 original size:2 final size:2
Alignment explanation
Indices: 67665042--67665068 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67665032 GAGACTAGTC
67665042 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
67665069 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67669660 original size:31 final size:31
Alignment explanation
Indices: 67669619--67669682 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
67669609 CCTTTTCATA
*
67669619 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
67669650 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
67669681 TT
1 TT
67669683 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:67669975 original size:24 final size:24
Alignment explanation
Indices: 67669876--67670040 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
67669866 GCTTTATCAT
* *
67669876 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
67669901 ATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
*
67669924 ATAACTAGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
67669947 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
67669971 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
67669995 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
67670018 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67670041 TCACTTCCTC
Statistics
Matches: 128, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
22 3 0.02
23 56 0.44
24 57 0.45
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:67669992 original size:47 final size:46
Alignment explanation
Indices: 67669875--67670039 Score: 224
Period size: 47 Copynumber: 3.5 Consensus size: 46
67669865 TGCTTTATCA
* * *
67669875 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTT
1 TATAACTGG-GGCATAAGCC-C-TTTGATAACTGGGGCATAAGCCCTTT
* *
67669923 TATAACTAGGGCATAAGCCCTTTGATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCTTT
67669969 TGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCC-TTTGATAACTGGGGCATAAGCCCTTT
*
67670017 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
67670040 TTCACTTCCT
Statistics
Matches: 106, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
46 27 0.25
47 42 0.40
48 37 0.35
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (46 bp):
TATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCTTT
Found at i:67670011 original size:71 final size:70
Alignment explanation
Indices: 67669876--67670040 Score: 242
Period size: 71 Copynumber: 2.3 Consensus size: 70
67669866 GCTTTATCAT
*
67669876 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTAGGGCATAAG
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTAGGGCATAAG
*
67669940 CCCTTTG
64 CCCTTTA
* * * *
67669947 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTT-ATAACTAGGGCATAAGC
67670012 CCTTTA
65 CCTTTA
67670018 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67670041 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
70 31 0.36
71 55 0.64
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTAGGGCATAAGCC
CTTTA
Found at i:67670118 original size:20 final size:20
Alignment explanation
Indices: 67670095--67670157 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
67670085 GAACATCTCG
*
67670095 TGTGCATATCATACATTTCA
1 TGTGCATATCATACATATCA
*
67670115 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
67670135 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
67670155 TGT
1 TGT
67670158 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:67670240 original size:25 final size:25
Alignment explanation
Indices: 67670194--67670241 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
67670184 ATATATAAAC
* * * *
67670194 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
67670219 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
67670242 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:67671430 original size:27 final size:26
Alignment explanation
Indices: 67671400--67671477 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
67671390 AGGCATATTC
67671400 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
*
67671427 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
* *
67671454 GTCTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ACAGGGGTATT
67671478 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 4 0.09
27 36 0.84
28 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:67671554 original size:27 final size:26
Alignment explanation
Indices: 67671533--67671766 Score: 213
Period size: 27 Copynumber: 8.7 Consensus size: 26
67671523 AAGGGTATTT
*
67671533 CAGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGT-AAA
*
67671560 CAGTAATTCTGTAAATCAAGGGTGAAA
1 CAGTAATTCTGTAAATCGAGGGT-AAA
*
67671587 CAGTAATTCTATAAATCGAGGGTAAA
1 CAGTAATTCTGTAAATCGAGGGTAAA
**
67671613 -ATGGTAATTCTGTAAATTAAGGGTAAAA
1 CA--GTAATTCTGTAAATCGAGGGT-AAA
*
67671641 CGGTAATTCTGTAAATCGAGGGTAAA
1 CAGTAATTCTGTAAATCGAGGGTAAA
*
67671667 -ACGATAATTATGTAAATCGAGGGTAAAA
1 CA-G-TAATTCTGTAAATCGAGGGT-AAA
* * **
67671695 CGGTAATTTTACAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGT-AAA
* * *
67671722 CGGTAATTCTAT-AACCTGAGGGTAAAA
1 CAGTAATTCTGTAAATC-GAGGGT-AAA
*
67671749 CAGTAATTTTGTAAATCG
1 CAGTAATTCTGTAAATCG
67671767 GGAGTACTTT
Statistics
Matches: 173, Mismatches: 24, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 10 0.06
27 152 0.88
28 10 0.06
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (26 bp):
CAGTAATTCTGTAAATCGAGGGTAAA
Found at i:67671580 original size:54 final size:54
Alignment explanation
Indices: 67671533--67671766 Score: 299
Period size: 54 Copynumber: 4.3 Consensus size: 54
67671523 AAGGGTATTT
* *
67671533 CAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTGAAA
1 CAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
* * * *
67671587 CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTAAGGGTAAAA
1 CAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
* * * * *
67671641 CGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAA
1 CAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
* ** * * *
67671695 CGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT-AACCTGAGGGTAAAA
1 CAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-AAGGGTAAAA
67671749 CAGTAATTTTGTAAATCG
1 CAGTAATTTTGTAAATCG
67671767 GGAGTACTTT
Statistics
Matches: 156, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 3 0.02
54 153 0.98
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (54 bp):
CAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA
Found at i:67671627 original size:81 final size:81
Alignment explanation
Indices: 67671535--67671766 Score: 306
Period size: 81 Copynumber: 2.9 Consensus size: 81
67671525 GGGTATTTCA
* * * * *
67671535 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTGAAACAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTA
*
67671600 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAACG
* **
67671616 GTAATTCTGTAAATTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTATGT
67671680 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
** * * *
67671697 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT-AACCTGAGGGTAAAACAGTAATTTTGT
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTATGT
67671761 AAATCG
65 AAATCG
67671767 GGAGTACTTT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 4 0.03
81 126 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTA
AATCGAGGGTAAAACG
Found at i:67671781 original size:81 final size:81
Alignment explanation
Indices: 67671535--67671797 Score: 298
Period size: 81 Copynumber: 3.2 Consensus size: 81
67671525 GGGTATTTCA
** * * * * *
67671535 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTGAAACAGTAATTCTATA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTA
67671600 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* ** **
67671616 GTAATTCTGTAAATTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTATGT
*
67671680 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAATG
* * *
67671697 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT-AACCTGAGGGTAAAACAGTAATTTTGT
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTATGT
***
67671761 AAATCG-GGAGTACTTTG
65 AAATCGAGG-GTAAAATG
*
67671778 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAAATCGAGGG
67671798 CATTTCAGTA
Statistics
Matches: 156, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
80 6 0.04
81 149 0.96
82 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTA
AATCGAGGGTAAAATG
Found at i:67674784 original size:28 final size:28
Alignment explanation
Indices: 67674752--67674820 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67674742 GCGTAGATCA
67674752 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67674780 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
67674808 CGATA-TACCCCTA
1 CGAAATTACCCCTA
67674821 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67679535 original size:46 final size:48
Alignment explanation
Indices: 67679463--67679566 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 48
67679453 GACAGGACAG
* * *
67679463 GACAGAAATGAGCCATGTAAGTCC-ATAT-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCAATATACAGATATATGGCATTGGA
* *
67679509 GACAGGAATGAGCCATGTAAGCCCATATATATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCA-ATATACAGATATATGGCATTGGA
67679558 GACAGGAAT
1 GACAGGAAT
67679567 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
46 22 0.44
48 4 0.08
49 24 0.48
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCAATATACAGATATATGGCATTGGA
Found at i:67683857 original size:46 final size:48
Alignment explanation
Indices: 67683785--67683887 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
67683775 GACAGGACAG
* * *
67683785 GACAGAAATGAGCCATGTAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATAGTACAGATATATGGCATTGGA
* *
67683831 GACAGGAATGAGCCATGTAAGCCCATAGTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATAGTACAGATATATGGCATTGGA
67683879 GACAGGAAT
1 GACAGGAAT
67683888 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 25 0.50
47 1 0.02
48 24 0.48
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATAGTACAGATATATGGCATTGGA
Found at i:67688178 original size:46 final size:48
Alignment explanation
Indices: 67688106--67688209 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 48
67688096 GACAGGACAG
* * *
67688106 GACAGAAATGAGCCATGTAAGTCC-ATAT-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCAATATACAGATATATGGCATTGGA
* *
67688152 GACAGGAATGAGCCATGTAAGCCCATATATATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCA-ATATACAGATATATGGCATTGGA
67688201 GACAGGAAT
1 GACAGGAAT
67688210 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
46 22 0.44
48 4 0.08
49 24 0.48
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCAATATACAGATATATGGCATTGGA
Found at i:67692505 original size:46 final size:47
Alignment explanation
Indices: 67692433--67692534 Score: 152
Period size: 46 Copynumber: 2.2 Consensus size: 47
67692423 GACAGGACAG
* * *
67692433 GACAGAAATGAGCCATGTAAGTCCATAT-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATACAGATATATGGCATTGGA
* *
67692479 GACAGGAATGAGCCATGTAAGCCCATATATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATACAGATATATGGCATTGGA
67692526 GACAGGAAT
1 GACAGGAAT
67692535 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 26 0.52
47 24 0.48
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (47 bp):
GACAGGAATGAGCCATGTAAGCCCATATACAGATATATGGCATTGGA
Found at i:67692543 original size:47 final size:46
Alignment explanation
Indices: 67692433--67692551 Score: 148
Period size: 47 Copynumber: 2.6 Consensus size: 46
67692423 GACAGGACAG
* * *
67692433 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
* * * *
67692479 GACAGGAATGAGCCATGTAAGCCCATATATATATATATGGCATTGGA
1 GACAGGAATAAGCCATGTAAGTCCATAT-CAGATATATGGCATTGGA
**
67692526 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATAAGCCATGTAAGTCCAT
67692552 GTCGAAGACA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
46 26 0.41
47 37 0.59
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (46 bp):
GACAGGAATAAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
Found at i:67695348 original size:45 final size:45
Alignment explanation
Indices: 67695299--67695472 Score: 203
Period size: 45 Copynumber: 3.8 Consensus size: 45
67695289 TGGTTGAGCA
67695299 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
* * *
67695344 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-T--G
*
67695389 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
* * *
67695437 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67695473 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 6 0.05
43 1 0.01
44 2 0.02
45 44 0.40
46 19 0.17
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
Found at i:67695462 original size:92 final size:92
Alignment explanation
Indices: 67695296--67695465 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 92
67695286 GGATGGTTGA
* *
67695296 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
67695361 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
67695388 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGCCCGAACTCGTTGAGT
67695453 TGAGT-CGAGTTCG
65 TGAGTCCGAGTTCG
67695466 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 52 0.70
93 22 0.30
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67700833 original size:46 final size:46
Alignment explanation
Indices: 67700777--67700951 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
67700767 TGGTTGAGCA
*
67700777 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
67700823 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
67700870 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67700916 CCCGAGCTC-TTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67700952 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
43 6 0.05
45 29 0.26
46 39 0.35
47 30 0.27
48 3 0.03
50 6 0.05
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67703951 original size:24 final size:24
Alignment explanation
Indices: 67703876--67703938 Score: 108
Period size: 24 Copynumber: 2.6 Consensus size: 24
67703866 AGTCTGTCAA
*
67703876 GAGAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGATGATAAGG
*
67703900 GATAGGATTTAGGAGATGATAAGG
1 GAGAGGATTTAGGAGATGATAAGG
67703924 GAGAGGATTTAGGAG
1 GAGAGGATTTAGGAG
67703939 CGGATTAGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.35, C:0.00, G:0.41, T:0.24
Consensus pattern (24 bp):
GAGAGGATTTAGGAGATGATAAGG
Found at i:67705452 original size:54 final size:53
Alignment explanation
Indices: 67705361--67705465 Score: 138
Period size: 54 Copynumber: 2.0 Consensus size: 53
67705351 GGAAGCGTCC
* * *
67705361 TGGTGGCTATGCCACATTTATCTGATCTAGTGGCTCTGCCATATATATCTGTCT
1 TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACAT-TATCTGTCT
* * * *
67705415 TGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGT
1 TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCTGT
67705466 TCTGGCAGCA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 7 0.16
54 37 0.84
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (53 bp):
TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCTGTCT
Found at i:67705467 original size:26 final size:26
Alignment explanation
Indices: 67705360--67705470 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
67705350 AGGAAGCGTC
* *
67705360 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACA-TTATCTGTT
* *
67705387 CTAGTGGCTCTGCCATATATATCTG-T
1 CTGGTGGCTCTGCCACAT-TATCTGTT
67705413 CTTGGTGGCTCTGCCACAATTATCTGTT
1 C-TGGTGGCTCTGCCAC-ATTATCTGTT
* *
67705441 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
67705467 CTGG
1 CTGG
67705471 CAGCAATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 17 0.23
27 52 0.71
28 4 0.05
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:67707726 original size:19 final size:18
Alignment explanation
Indices: 67707704--67707740 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
67707694 AGAATTGGCC
67707704 AAATGGGCCGGAATGGGCT
1 AAATGGGCCGG-ATGGGCT
*
67707723 AAATGGGCCTGATGGGCT
1 AAATGGGCCGGATGGGCT
67707741 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.24, C:0.16, G:0.41, T:0.19
Consensus pattern (18 bp):
AAATGGGCCGGATGGGCT
Found at i:67707854 original size:29 final size:29
Alignment explanation
Indices: 67707809--67707927 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
67707799 GTGAGCATAA
*
67707809 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
67707837 ATATGAATGTGAATTGGGCCTACTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
67707866 ATAAGAATATGAACTGGGCC-AGATGGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * *
67707895 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
67707923 ATATG
1 ATATG
67707928 CATGTATGTA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 22 0.29
29 53 0.71
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:67708992 original size:17 final size:18
Alignment explanation
Indices: 67708960--67708993 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67708950 TTTAAGAAGG
67708960 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
67708978 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
67708994 TTCAATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:67715293 original size:43 final size:43
Alignment explanation
Indices: 67715232--67715379 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 43
67715222 CAATACCGAC
** *
67715232 GTCCCAGACGTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACACGGTCTTACATGTAATTCAATATCGATGCCTAT
* * ** *
67715275 GTCCCAGATAGGGTCTTACATG-AAAGCAGATA-CGATGCCGAT
1 GTCCCAGACACGGTCTTACATGTAATTCA-ATATCGATGCCTAT
* * * * *
67715317 GTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGT
1 GTCCCAGACACGGTCTTACATGT-AAT-TCAATATCGATGCCTAT
67715360 GTCCCAGACACGGTCTTACA
1 GTCCCAGACACGGTCTTACA
67715380 CGATGTCTCA
Statistics
Matches: 82, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
42 31 0.38
43 48 0.59
44 2 0.02
45 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (43 bp):
GTCCCAGACACGGTCTTACATGTAATTCAATATCGATGCCTAT
Found at i:67717171 original size:51 final size:51
Alignment explanation
Indices: 67717041--67717171 Score: 162
Period size: 49 Copynumber: 2.6 Consensus size: 51
67717031 GCTATCTGGT
* *
67717041 ACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTGGTAC
1 ACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTGGGAC
* * *
67717092 ATG--TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGA-
1 ACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG-TCT-GGGAC
*
67717141 ACGCATAGTAGCCTGCACTTAGTACAACACA
1 ACGCATAGTAGCCTGCACTTAGTACTACACA
67717172 TGCGACCTCA
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
48 4 0.06
49 35 0.51
50 3 0.04
51 27 0.39
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (51 bp):
ACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTGGGAC
Found at i:67722995 original size:54 final size:54
Alignment explanation
Indices: 67722920--67723317 Score: 333
Period size: 54 Copynumber: 7.5 Consensus size: 54
67722910 TTGGTAGGAT
* *
67722920 AAGGATATCATGTAAGACCATGCCAAGGCAT-GCAATTGATAAGTTCTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGC-ATTGATGAGTTCTATAAGGC
* *
67722974 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG-
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* *
67723028 AA--AAAGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGAC
1 AAGGAAA-T--CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
*** *** * **
67723082 AAGGATGCCATGTAAGACCATG-TTTGGAACAAGGCATT--TG-G-----TAAGAT
1 AAGGAAATCATGTAAGACCATGCCAAGG--CATGGCATTGATGAGTTCTATAAGGC
* * *
67723129 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATGAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
** *
67723183 AAGGAAATCATGTAAGACCATGTGAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
** * * *
67723238 AAAGGTCA-CATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGT
1 -AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
67723291 AAGGATACCACGTAAGACCATGTCAAG
1 AAGGAAATCATGTAAGACCATGCCAAG
67723318 ACATTGCAAT
Statistics
Matches: 277, Mismatches: 45, Indels: 45
0.75 0.12 0.12
Matches are distributed among these distances:
46 8 0.03
47 25 0.09
48 3 0.01
49 1 0.00
51 1 0.00
52 12 0.04
53 42 0.15
54 95 0.34
55 84 0.30
56 6 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:67723049 original size:55 final size:52
Alignment explanation
Indices: 67722927--67723289 Score: 255
Period size: 55 Copynumber: 6.9 Consensus size: 52
67722917 GATAAGGATA
* *
67722927 TCATGTAAGACCATGCCAAGGCAT-GCAATTGATAAGTTCTATAAGGCAAGGAAA-
1 TCATGTAAGACCATGCCAAGACATGGC-ATTGATGAGTTCTATAAGG-AA--AAAG
*
67722981 TCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAAG
1 TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGAAAAAG
* * *
67723034 TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAA-GACAAGGATG
1 T--CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA-AA--AAG
* **** * *** *
67723089 CCATGTAAGACCATGTTTGGAACAAGGCATT--TG-GTAAGATAAGG--ATA-
1 TCATGTAAGACCATGCCAAG-ACATGGCATTGATGAGTTCTATAAGGAAAAAG
* * *
67723136 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATGAGGCAAGGAAA-
1 TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGG-AA--AAAG
** * *
67723190 TCATGTAAGACCATGTGAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG
1 TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGAAAAAG
* * *
67723243 TCACATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG
1 T--CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGG
67723290 TAAGGATACC
Statistics
Matches: 243, Mismatches: 43, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
46 8 0.03
47 15 0.06
48 1 0.00
49 7 0.03
50 1 0.00
51 2 0.01
52 13 0.05
53 30 0.12
54 81 0.33
55 85 0.35
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (52 bp):
TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAAG
Found at i:67723119 original size:109 final size:107
Alignment explanation
Indices: 67722882--67723313 Score: 425
Period size: 109 Copynumber: 4.1 Consensus size: 107
67722872 TATAATATAT
** *
67722882 ATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAGGATAAGG-ATA-T-CATGTAAGACCA
1 ATGTAAGACCATG-TTGGAACATGGCATTGATGAGTTACTATAAGGAAAAGTCCATGTAAGACCA
*
67722940 TGCCAAGGCAT-GCAATTGATAAGTTCTATAAGGCAAGGAAATC
65 TGCCAAGGCATGGC-ATTGATAAGTTCTATAAGGCAAGGAAACC
**
67722983 ATGTAAGACCATG-TCAAGACATGGCATTGATGAGTTACTATAAGGAAAAAGTCCCATGTAAGAC
1 ATGTAAGACCATGTTGGA-ACATGGCATTGATGAGTTACTATAAGG-AAAAGT-CCATGTAAGAC
* * * **
67723047 CATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGACAAGGATGCC
63 CATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACC
* ** *
67723091 ATGTAAGACCATGTTTGGAACAAGGCATT--TG-G-TAAGATAAGG-ATA-T-CATGTAAGACCA
1 ATGTAAGACCATG-TTGGAACATGGCATTGATGAGTTACTATAAGGAAAAGTCCATGTAAGACCA
* *
67723149 TGCCAAGGCATGGCATTGATAAGTTCTATGAGGCAAGGAAATC
65 TGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACC
* * *
67723192 ATGTAAGACCATG-TGAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCACATATAAGAC
1 ATGTAAGACCATGTTGGA-ACATGGCATTGATGAGTTACTATAAGG-AAAAGTC-CATGTAAGAC
* * * *
67723256 CATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGTAAGGATACC
63 CATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACC
*
67723300 ACGTAAGACCATGT
1 ATGTAAGACCATGT
67723314 CAAGACATTG
Statistics
Matches: 268, Mismatches: 38, Indels: 42
0.77 0.11 0.12
Matches are distributed among these distances:
99 5 0.02
100 55 0.21
101 37 0.14
102 5 0.02
103 4 0.01
104 16 0.06
105 8 0.03
106 4 0.01
107 4 0.01
108 49 0.18
109 77 0.29
110 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (107 bp):
ATGTAAGACCATGTTGGAACATGGCATTGATGAGTTACTATAAGGAAAAGTCCATGTAAGACCAT
GCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACC
Found at i:67723256 original size:209 final size:209
Alignment explanation
Indices: 67722882--67723313 Score: 740
Period size: 209 Copynumber: 2.1 Consensus size: 209
67722872 TATAATATAT
* *
67722882 ATGTAAGACCATGTTTGGAACATGGCATTTGGTAGGATAAGGATATCATGTAAGACCATGCCAAG
1 ATGTAAGACCATGTTTGGAACAAGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCCAAG
67722947 GCATGCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
66 GCATGCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
* *
67723012 ATGAGTTACTATAAGGAAAAAGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCAT
131 ATGAGTTACTATAAGGAAAAAGTCACATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTCAT
*
67723077 AAGACAAGGATGCC
196 AAGACAAGGATACC
67723091 ATGTAAGACCATGTTTGGAACAAGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCCAAG
1 ATGTAAGACCATGTTTGGAACAAGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCCAAG
* *
67723156 GCATGGC-ATTGATAAGTTCTATGAGGCAAGGAAATCATGTAAGACCATGTGAAGACATGGCATT
66 GCAT-GCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATT
* *
67723220 GATGAGTTACTATAAGGCAAAGGTCACATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
130 GATGAGTTACTATAAGGAAAAAGTCACATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
**
67723285 TAAGGTAAGGATACC
195 TAAGACAAGGATACC
*
67723300 ACGTAAGACCATGT
1 ATGTAAGACCATGT
67723314 CAAGACATTG
Statistics
Matches: 210, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
209 208 0.99
210 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (209 bp):
ATGTAAGACCATGTTTGGAACAAGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCCAAG
GCATGCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
ATGAGTTACTATAAGGAAAAAGTCACATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTCAT
AAGACAAGGATACC
Found at i:67723273 original size:155 final size:153
Alignment explanation
Indices: 67722974--67723274 Score: 335
Period size: 155 Copynumber: 1.9 Consensus size: 153
67722964 TCTATAAGGC
* *
67722974 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAAGTCCCA
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGAAAAAGT-CCA
* * *
67723039 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGACAAGGATGCCATGTAAGACCATG
65 TGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGACAAGGATGCCATATAAGACCATG
***
67723104 TTTGGAACAAGGCATTTGGTAAGAT
130 CAAGG-ACAAGGCATTTGGTAAGAT
* * *
67723129 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATGAGGCAAGGAAA-T-
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGG-AA--AAAGTC
** *
67723191 CATGTAAGACCATGTGAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-T-CACATATAAG
63 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-ATAAGAC-AAGGATGC-CATATAAG
*
67723254 ACCATGCCAAGG-CATGGCATT
124 ACCATG-CAAGGACAAGGCATT
67723275 GGTGAGTTCA
Statistics
Matches: 123, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
154 40 0.33
155 53 0.43
156 21 0.17
157 9 0.07
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (153 bp):
AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGAAAAAGTCCAT
GTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGACAAGGATGCCATATAAGACCATGC
AAGGACAAGGCATTTGGTAAGAT
Found at i:67723458 original size:16 final size:17
Alignment explanation
Indices: 67723439--67723471 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
67723429 CTTATTTAAT
67723439 ATTGAGATTAT-AAGTA
1 ATTGAGATTATCAAGTA
67723455 ATTGAGATTATCAAGTA
1 ATTGAGATTATCAAGTA
67723472 TTAAGTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.36
Consensus pattern (17 bp):
ATTGAGATTATCAAGTA
Found at i:67726958 original size:29 final size:29
Alignment explanation
Indices: 67726896--67726998 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
67726886 GTGACGAGAT
* * *
67726896 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
67726925 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
67726954 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
67726983 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67726999 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:67730786 original size:48 final size:48
Alignment explanation
Indices: 67730734--67731054 Score: 238
Period size: 45 Copynumber: 6.8 Consensus size: 48
67730724 CGACCACATT
* *
67730734 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* * * *
67730782 ATGAGAGCTAGTGTAAGA-TATGTCTAGGACAT-GCA-CGGCCTTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
*
67730827 ATGTA-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-TATGAG
1 ATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAG
* * * *
67730873 AT--GTGTCAATGTAAGACCATGTCTGGGACATGGCATCGGCA-TG-T
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* ** * * * * ** *
67730917 ATAGAGGTGTTAGTGTAAGACCATGTCTAGGAAATTGTATCGGCACGGAT
1 AT-GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* * *
67730967 ATGTAAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGAC-TT--G
1 ATG--AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* *
67731014 ATGGATGTGCCAGTGTAAGACCATGTCTGGGACATCGCATC
1 AT-GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
67731055 AACACTATTC
Statistics
Matches: 221, Mismatches: 35, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.05
45 55 0.25
46 21 0.10
47 44 0.20
48 51 0.23
49 2 0.01
50 35 0.16
51 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
Found at i:67730900 original size:137 final size:144
Alignment explanation
Indices: 67730740--67731054 Score: 357
Period size: 137 Copynumber: 2.2 Consensus size: 144
67730730 CATTATGAGA
* * *
67730740 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAA-ATGA-GAGCTAGTGTAAGA-TA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCA-TGAATA-GAGGAGCTAGTGTAAGACCA
* * *
67730802 TGTCTAGGACA-TGCA-CGGC-CTTGAGATGT-A-AGCCAGTGTAAGA-CATGTCTGGGACAT-G
64 TGTCTAGGAAATTGCATCGGCAC-GGAGATGTAAGAGCCAGTGTAAGACCATGTCTAGGACATGG
67730860 CATC-AGCTATGA-GATGT
128 CATCGA-CT-TGAGGATGT
* * * *
67730877 GTCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGTATAGAGGTGTTAGTGTAAGACCATG
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGAATAGAGGAGCTAGTGTAAGACCATG
* * *
67730942 TCTAGGAAATTGTATCGGCACGGATATGTAAGAGCTAGTGTAAGACCATGTCTAGGACATGGCAT
66 TCTAGGAAATTGCATCGGCACGGAGATGTAAGAGCCAGTGTAAGACCATGTCTAGGACATGGCAT
67731007 CGACTTGATGGATGT
131 CGACTTGA-GGATGT
* *
67731022 GCCAGTGTAAGACCATGTCTGGGACATCGCATC
1 GCCAATGTAAGACCATGTCTGGGACATGGCATC
67731055 AACACTATTC
Statistics
Matches: 149, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
136 5 0.03
137 47 0.32
138 11 0.07
139 3 0.02
140 10 0.07
141 2 0.01
142 12 0.08
143 16 0.11
144 7 0.05
145 36 0.24
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (144 bp):
GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGAATAGAGGAGCTAGTGTAAGACCATG
TCTAGGAAATTGCATCGGCACGGAGATGTAAGAGCCAGTGTAAGACCATGTCTAGGACATGGCAT
CGACTTGAGGATGT
Found at i:67733264 original size:42 final size:43
Alignment explanation
Indices: 67733153--67733311 Score: 117
Period size: 43 Copynumber: 3.7 Consensus size: 43
67733143 AAAGCTTATA
* * * *
67733153 CAATGCCAACGTTCCAGACATGGTCTAACATGTAATCAAACAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACAT
* * * * * * *
67733196 CAATGTCACTGTCCCAAATAGGGTCTTACATGAAATCAGATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACAT
* * *
67733239 -GATGCCAATGTCCCAGACATGGTCTTACACGTAAAAT-AGAA-GT
1 CAATGCCAATGTCCCAGACATGGTCTTACA--TGAAATCA-AACAT
* * *
67733282 CAATGCTAAGGTCCTAGACATGGTCTTACA
1 CAATGCCAATGTCCCAGACATGGTCTTACA
67733312 CGATAACACA
Statistics
Matches: 88, Mismatches: 24, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
42 23 0.26
43 34 0.39
44 31 0.35
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACAT
Found at i:67739839 original size:25 final size:25
Alignment explanation
Indices: 67739792--67739840 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
67739782 TTAAAGTATG
* * * *
67739792 AAAAATGACTATTTTGCCTCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
67739817 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
67739841 GTTTGATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:67739890 original size:10 final size:10
Alignment explanation
Indices: 67739871--67739916 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
67739861 CATGAAACAT
67739871 TGATAT-ACA
1 TGATATGACA
67739880 TGATATGACA
1 TGATATGACA
67739890 TGATATGCACA
1 TGATATG-ACA
67739901 TGATATG-CTA
1 TGATATGAC-A
67739911 TGATAT
1 TGATAT
67739917 ATTCACTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 7 0.21
10 17 0.50
11 10 0.29
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:67739903 original size:11 final size:11
Alignment explanation
Indices: 67739877--67739908 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
67739867 ACATTGATAT
67739877 ACATGATATG-
1 ACATGATATGC
67739887 ACATGATATGC
1 ACATGATATGC
67739898 ACATGATATGC
1 ACATGATATGC
67739909 TATGATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (11 bp):
ACATGATATGC
Found at i:67739903 original size:21 final size:21
Alignment explanation
Indices: 67739877--67739916 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
67739867 ACATTGATAT
67739877 ACATGATATGAC-ATGATATGC
1 ACATGATATG-CTATGATATGC
67739898 ACATGATATGCTATGATAT
1 ACATGATATGCTATGATAT
67739917 ATTCACTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (21 bp):
ACATGATATGCTATGATATGC
Found at i:67740021 original size:24 final size:25
Alignment explanation
Indices: 67739965--67740021 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
67739955 GGAAGTGTGA
67739965 AAAG-GGCTTTGCCCCAGTTTATCG
1 AAAGAGGCTTTGCCCCAGTTTATCG
**
67739989 AAA-AGGGCTTTGCCCCAG-TTATTT
1 AAAGA-GGCTTTGCCCCAGTTTATCG
67740013 AAAGAGGCT
1 AAAGAGGCT
67740022 AGGCCTCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (25 bp):
AAAGAGGCTTTGCCCCAGTTTATCG
Found at i:67742887 original size:13 final size:13
Alignment explanation
Indices: 67742869--67742902 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
67742859 CGGCTAACCT
67742869 ACATAATTAAATA
1 ACATAATTAAATA
67742882 ACATAATTAAATA
1 ACATAATTAAATA
*
67742895 AAATAATT
1 ACATAATT
67742903 TTTCATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:67743162 original size:20 final size:22
Alignment explanation
Indices: 67743127--67743173 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
67743117 GAGCTGAAAT
67743127 GAGCTAAAATTCGAGCTCAAGC
1 GAGCTAAAATTCGAGCTCAAGC
*
67743149 GAGCT-AAA-TCGAGCTCAAGT
1 GAGCTAAAATTCGAGCTCAAGC
67743169 GAGCT
1 GAGCT
67743174 GATTGGAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 16 0.67
21 3 0.12
22 5 0.21
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (22 bp):
GAGCTAAAATTCGAGCTCAAGC
Found at i:67743480 original size:22 final size:21
Alignment explanation
Indices: 67743441--67743481 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
67743431 CCAGTCCCAT
67743441 GCATCAGAAAATAATAACATG
1 GCATCAGAAAATAATAACATG
* *
67743462 GCATGCAGTAAATAGTAACA
1 GCAT-CAGAAAATAATAACA
67743482 GTCAAAATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (21 bp):
GCATCAGAAAATAATAACATG
Found at i:67750121 original size:40 final size:40
Alignment explanation
Indices: 67750070--67750314 Score: 327
Period size: 40 Copynumber: 6.1 Consensus size: 40
67750060 GGATGATAAT
67750070 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
67750109 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
*
67750149 TTCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTATA
* *
67750190 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
* * * *
67750230 TCCGAGCTAAGTCCCGAAGACATTTGTGCAAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTATA
* * * *
67750270 TCCGGGCTAAGTCCTGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
67750310 TCCGG
1 TCCGG
67750315 TTAAAGCCCG
Statistics
Matches: 187, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 181 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
Found at i:67755477 original size:27 final size:26
Alignment explanation
Indices: 67755440--67755546 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
67755430 AGCATGGCTG
* *
67755440 CCAGAA-AGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
67755465 CCAGATATAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
67755492 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
67755519 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
67755546 C
1 C
67755547 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.07
26 7 0.10
27 50 0.71
28 8 0.11
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:67755733 original size:22 final size:22
Alignment explanation
Indices: 67755705--67755769 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
67755695 GCAAATACGT
*
67755705 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
67755727 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
67755749 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
67755770 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:67756206 original size:27 final size:26
Alignment explanation
Indices: 67756176--67756317 Score: 169
Period size: 27 Copynumber: 5.3 Consensus size: 26
67756166 AGCTCACAAA
*
67756176 GGTATCTTGGTAATTCTACCCTACAGG
1 GGTAT-TTAGTAATTCTACCCTACAGG
*
67756203 GGTATTTCAGTAATTCTATCCTACAGGG
1 GGTATTT-AGTAATTCTACCCTACA-GG
*
67756231 GGTATTTCAGTAATTATACCCTACAGG
1 GGTATTT-AGTAATTCTACCCTACAGG
* *
67756258 GGTATTTTGGTAATTTTACCCTACAGG
1 GGTA-TTTAGTAATTCTACCCTACAGG
*
67756285 GGTATTTTAGTAATTCTACCCTACA-A
1 GGTA-TTTAGTAATTCTACCCTACAGG
67756311 GGTATTT
1 GGTATTT
67756318 CAATCATTTT
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
25 3 0.03
26 6 0.06
27 66 0.64
28 28 0.27
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (26 bp):
GGTATTTAGTAATTCTACCCTACAGG
Found at i:67756245 original size:55 final size:54
Alignment explanation
Indices: 67756185--67756319 Score: 191
Period size: 55 Copynumber: 2.5 Consensus size: 54
67756175 AGGTATCTTG
*
67756185 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATCCTACAGGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACA-GGGGTATTTCA
* ** * *
67756240 GTAATTATACCCTACAGGGGTATTTTGGTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
67756294 GTAATTCTACCCTACA-AGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
67756320 ATCATTTTGT
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
53 7 0.10
54 25 0.36
55 38 0.54
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:67762215 original size:44 final size:41
Alignment explanation
Indices: 67762157--67762279 Score: 140
Period size: 44 Copynumber: 2.9 Consensus size: 41
67762147 GTGTTACAAT
* * *
67762157 TTTCGTGTATGACCACGTCTAGGACTTTGGCATCGACTTATGA
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGA-TT-TGA
* *
67762200 TTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATTTGA
*
67762243 TTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGAT
1 TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
67762280 ATTTAATTAC
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
41 2 0.03
42 28 0.41
43 9 0.13
44 29 0.42
45 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (41 bp):
TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGA
Found at i:67762262 original size:42 final size:41
Alignment explanation
Indices: 67762157--67762283 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 41
67762147 GTGTTACAAT
* * *
67762157 TTTCGTGTATGACCAC-GTCTAGGACTTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACC-CTGTCTGGGAC-ATGGCATCGTA-TT-TGA
*
67762200 TTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
1 TTT-CGTGTAAGACCCTGTCTGGGACAT-GGCATCGTATTTGA
67762243 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTT
1 TTTCGTGTAAGACCCTGTCTGGGACA-TGGCATCG-TATTT
67762284 AATTACTTAT
Statistics
Matches: 73, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
42 29 0.40
43 16 0.22
44 27 0.37
45 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (41 bp):
TTTCGTGTAAGACCCTGTCTGGGACATGGCATCGTATTTGA
Found at i:67763923 original size:29 final size:30
Alignment explanation
Indices: 67763879--67763938 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
67763869 TTCCTGAGCC
67763879 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
67763909 TAGGGG-AAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
67763938 T
1 T
67763939 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:67783709 original size:29 final size:29
Alignment explanation
Indices: 67783639--67783730 Score: 150
Period size: 29 Copynumber: 3.2 Consensus size: 29
67783629 AAGTCTACAT
*
67783639 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
67783667 ACATTCATATGGCCCACTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
67783696 ACATTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
67783725 ACATTC
1 ACATTC
67783731 GTATACGTGG
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
28 23 0.38
29 37 0.62
ACGTcount: A:0.30, C:0.35, G:0.14, T:0.21
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:67788226 original size:26 final size:27
Alignment explanation
Indices: 67788175--67788254 Score: 74
Period size: 29 Copynumber: 2.9 Consensus size: 27
67788165 TACATACATG
* *
67788175 CATATGGCCCACTA-GCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAA-ATCATT
67788202 CA-ATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAAATC--ATT
* * *
67788230 CATACGGCCGATTAGGGCCAAATCA
1 CATATGGCCCATTAGGCCCAAATCA
67788255 CATTCGTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
26 12 0.27
27 9 0.20
28 5 0.11
29 18 0.41
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (27 bp):
CATATGGCCCATTAGGCCCAAATCATT
Found at i:67792806 original size:28 final size:28
Alignment explanation
Indices: 67792787--67792839 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
67792777 CAGTATCTAG
*
67792787 TGGGCCTTAGCCCAATAACAGAATCACA
1 TGGGCCTAAGCCCAATAACAGAATCACA
*
67792815 TGGGCCTAAGCCCAAT-ACAAAATCA
1 TGGGCCTAAGCCCAATAACAGAATCA
67792840 GTATCAGATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.38, C:0.28, G:0.17, T:0.17
Consensus pattern (28 bp):
TGGGCCTAAGCCCAATAACAGAATCACA
Found at i:67793316 original size:27 final size:27
Alignment explanation
Indices: 67793268--67793320 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
67793258 CATTCTACCA
67793268 TACAAGGGTATTACGGTCATTTTACAC
1 TACAAGGGTATTACGGTCATTTTACAC
** *
67793295 TACAAGGGTATTTTGGTGATTTTACA
1 TACAAGGGTATTACGGTCATTTTACA
67793321 AACTAATGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (27 bp):
TACAAGGGTATTACGGTCATTTTACAC
Found at i:67797771 original size:40 final size:40
Alignment explanation
Indices: 67797675--67797888 Score: 198
Period size: 40 Copynumber: 5.3 Consensus size: 40
67797665 CGAATGATGT
* * * * *
67797675 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
67797716 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTA-TCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAA
* * *
67797756 CCGGGTTAAGTCCCGAAAGCATTTGTTCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
67797796 TCGGGTTAAGTCCC-AAGGCATTTGTGCGAGTTGCTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * * *
67797835 CCGGGCTAATTCCTGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
67797875 CCGGGCTATGTCCC
1 CCGGGTTAAGTCCC
67797889 AAGACAATTA
Statistics
Matches: 139, Mismatches: 31, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
39 31 0.22
40 84 0.60
41 24 0.17
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:67805972 original size:40 final size:40
Alignment explanation
Indices: 67805787--67806003 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
67805777 TCGAATGATG
* * *
67805787 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
67805828 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
67805868 ACC-GGTTAAGTCCCGAAGGCATTTGTGC-AGTTACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67805906 ACC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
67805945 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67805986 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
67806004 ACAATCGAGC
Statistics
Matches: 155, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 38 0.25
39 33 0.21
40 57 0.37
41 27 0.17
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67806024 original size:40 final size:40
Alignment explanation
Indices: 67805946--67806029 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
67805936 GTTACTAAAT
* * *
67805946 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
67805986 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
67806026 CCGG
1 CCGG
67806030 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:67811416 original size:40 final size:40
Alignment explanation
Indices: 67811350--67811493 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
67811340 AAATTGAATG
* * *
67811350 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67811389 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
67811429 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
67811469 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
67811494 TTTGAGCACA
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67811514 original size:40 final size:40
Alignment explanation
Indices: 67811387--67811516 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
67811377 ATGCTGGAAA
* * *
67811387 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
67811427 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * *
67811467 TTCTATCCGGGCTAAGACCCGAAGGCATTTGAGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
67811507 TTATATCCGG
1 TTATATCCGG
67811517 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:67821937 original size:29 final size:28
Alignment explanation
Indices: 67821851--67821951 Score: 105
Period size: 29 Copynumber: 3.6 Consensus size: 28
67821841 TACTCAATCA
* *
67821851 CGCACACTTAGTGCCAT-GATTCAAGCC
1 CGCACACTTAGTGCCATACATTCAAGCT
* * * *
67821878 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
67821907 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
67821936 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67821952 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
27 16 0.27
28 2 0.03
29 41 0.69
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:67825942 original size:68 final size:66
Alignment explanation
Indices: 67825870--67826041 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
67825860 CATCATGTGT
* * * *
67825870 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
67825933 TGTAG
62 TGTAG
** * *
67825938 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
67826003 AG
65 AG
* * * *
67826005 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
67826042 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:67825975 original size:64 final size:64
Alignment explanation
Indices: 67825894--67826077 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
67825884 AGACATTATG
* * *
67825894 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
67825958 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67826023 AA
63 AA
* * *
67826025 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
67826078 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67832128 original size:48 final size:48
Alignment explanation
Indices: 67832066--67832245 Score: 342
Period size: 48 Copynumber: 3.7 Consensus size: 48
67832056 TATATATGTG
67832066 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
67832114 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
67832162 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG-ATATGTATA
*
67832211 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
67832246 GGAACGTGTG
Statistics
Matches: 130, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
48 87 0.67
49 43 0.33
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:67832242 original size:97 final size:96
Alignment explanation
Indices: 67832066--67832245 Score: 342
Period size: 97 Copynumber: 1.9 Consensus size: 96
67832056 TATATATGTG
67832066 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
67832131 GCTAATGTGAAATATGTATGAGATATGTATA
66 GCTAATGTGAAATATGTATGAGATATGTATA
67832162 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAATATGTATATGTGGTAAAGCCGAAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG-ATATGTATATGTGGTAAAGCCGAAT
*
67832227 GGCTAGTGTGAAATATGTA
65 GGCTAATGTGAAATATGTA
67832246 GGAACGTGTG
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
96 39 0.48
97 43 0.52
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (96 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAATGTGAAATATGTATGAGATATGTATA
Found at i:67832487 original size:37 final size:37
Alignment explanation
Indices: 67832389--67832527 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
67832379 GGAAATATAT
67832389 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
67832426 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
67832462 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
67832499 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
67832528 GGACTATTCG
Statistics
Matches: 97, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
36 35 0.36
37 62 0.64
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:67836454 original size:68 final size:66
Alignment explanation
Indices: 67836382--67836553 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
67836372 CATCATGTGT
* * * *
67836382 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
67836445 TGTAG
62 TGTAG
** * *
67836450 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
67836515 AG
65 AG
* * * *
67836517 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
67836554 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:67836487 original size:64 final size:64
Alignment explanation
Indices: 67836406--67836589 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
67836396 AGACATTATG
* * *
67836406 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
67836470 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67836535 AA
63 AA
* * *
67836537 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
67836590 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67840882 original size:68 final size:66
Alignment explanation
Indices: 67840810--67840981 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
67840800 CATCATGTGT
* * * *
67840810 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
67840873 TGTAG
62 TGTAG
** * *
67840878 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
67840943 AG
65 AG
* * * *
67840945 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
67840982 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:67840915 original size:64 final size:64
Alignment explanation
Indices: 67840834--67841017 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
67840824 AGACATTATG
* * *
67840834 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
67840898 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67840963 AA
63 AA
* * *
67840965 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
67841018 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67842893 original size:85 final size:85
Alignment explanation
Indices: 67842782--67842938 Score: 296
Period size: 85 Copynumber: 1.8 Consensus size: 85
67842772 GTTATAGTAC
* *
67842782 ATCCACTTAGCACCATGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGT
1 ATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACAT
67842847 TACATGTTTAACCGTGGTAT
66 TACATGTTTAACCGTGGTAT
67842867 ATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACAT
1 ATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACAT
67842932 TACATGT
66 TACATGT
67842939 ATCAATATGT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (85 bp):
ATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACAT
TACATGTTTAACCGTGGTAT
Found at i:67842924 original size:47 final size:48
Alignment explanation
Indices: 67842855--67842980 Score: 191
Period size: 48 Copynumber: 2.6 Consensus size: 48
67842845 GTTACATGTT
*
67842855 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
* * *
67842902 TAACCGTGGCATATCCACTTAGCACCACATTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
* *
67842950 TAATCGTTGTATATCCACTTAGCACCACATT
1 TAACCGTGGTATATCCACTTAGCACCACATT
67842981 TTTTCATTCC
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 30 0.42
48 41 0.58
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
Found at i:67845013 original size:31 final size:30
Alignment explanation
Indices: 67844978--67845041 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
67844968 CCTTTGCATG
67844978 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAG-CT
* **
67845009 TTTCATATTTCATATTACTGGGCCGAAGCT
1 TTTCATATTCCATAACACTGGGCCGAAGCT
67845039 TTT
1 TTT
67845042 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (30 bp):
TTTCATATTCCATAACACTGGGCCGAAGCT
Found at i:67845283 original size:24 final size:24
Alignment explanation
Indices: 67845232--67845374 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
67845222 GCTTTATCAT
*
67845232 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
67845257 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
67845281 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
67845304 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
67845328 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67845352 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67845375 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67845311 original size:47 final size:48
Alignment explanation
Indices: 67845232--67845373 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
67845222 GCTTTATCAT
* *
67845232 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
67845281 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
67845328 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
67845374 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:67845332 original size:71 final size:72
Alignment explanation
Indices: 67845231--67845374 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
67845221 TGCTTTATCA
*
67845231 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
67845296 GCCCTTT
66 GCCCTTT
* * **
67845303 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
67845366 AGCCCTTT
65 AGCCCTTT
67845374 T
1 T
67845375 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:67845449 original size:20 final size:20
Alignment explanation
Indices: 67845424--67845483 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
67845414 TTATGATTAC
67845424 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67845444 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67845464 -TCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67845483 A
1 A
67845484 CCATATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.49
20 20 0.51
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67845455 original size:11 final size:11
Alignment explanation
Indices: 67845424--67845478 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
67845414 TTATGATTAC
67845424 ATCATGTGCAT
1 ATCATGTGCAT
*
67845435 ATCA--TACAT
1 ATCATGTGCAT
67845444 ATCATGTGCAT
1 ATCATGTGCAT
*
67845455 ATCA--TACAT
1 ATCATGTGCAT
67845464 -TCATGTGCAT
1 ATCATGTGCAT
67845474 ATCAT
1 ATCAT
67845479 ACATACCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 3 0.09
9 12 0.34
10 4 0.11
11 16 0.46
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:67845469 original size:19 final size:19
Alignment explanation
Indices: 67845421--67845482 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
67845411 CAGTTATGAT
67845421 TACA-TCATGTGCATATCA
1 TACATTCATGTGCATATCA
67845439 TACATATCATGTGCATATCA
1 TACAT-TCATGTGCATATCA
67845459 TACATTCATGTGCATATCA
1 TACATTCATGTGCATATCA
67845478 TACAT
1 TACAT
67845483 ACCATATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
18 4 0.10
19 19 0.45
20 19 0.45
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (19 bp):
TACATTCATGTGCATATCA
Found at i:67845556 original size:25 final size:25
Alignment explanation
Indices: 67845524--67845572 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
67845514 TCATACATAA
* * *
67845524 ACCTAGGGGTATAATGGTCATTTTT
1 ACCTAGGGGCAAAACGGTCATTTTT
67845549 ACCTAGGGGCAAAACGGTCATTTT
1 ACCTAGGGGCAAAACGGTCATTTT
67845573 CATGGTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (25 bp):
ACCTAGGGGCAAAACGGTCATTTTT
Found at i:67846824 original size:27 final size:27
Alignment explanation
Indices: 67846804--67847389 Score: 725
Period size: 27 Copynumber: 21.7 Consensus size: 27
67846794 AGGGTATTTT
*
67846804 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67846831 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67846858 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67846885 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67846912 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
67846939 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
67846966 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* *
67846993 -GATAATTCTATAAATCGAGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
67847020 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
67847047 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
67847074 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67847101 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67847128 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67847155 AATAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67847182 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
67847209 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
67847236 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
67847263 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67847290 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * ** *
67847317 GGTAATTTTACAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67847344 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
67847371 AGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
67847390 AGTACTTTGG
Statistics
Matches: 495, Mismatches: 52, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
26 5 0.01
27 484 0.98
28 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:67852221 original size:40 final size:39
Alignment explanation
Indices: 67852056--67852239 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
67852046 AAATTGAATG
* * *
67852056 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
67852096 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
67852136 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
67852176 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
67852215 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
67852240 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Done.