Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 220 of 438
Found at i:67852264 original size:80 final size:81
Alignment explanation
Indices: 67852096--67852284 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
67852086 GCTGGAAATT
* * * *
67852096 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
67852161 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
67852177 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
67852240 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
67852256 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
67852285 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:67854832 original size:51 final size:51
Alignment explanation
Indices: 67854711--67854947 Score: 263
Period size: 51 Copynumber: 4.7 Consensus size: 51
67854701 ATTGTGAGTA
* * **
67854711 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-AT-ACTATTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-T
* * * *
67854761 CGCATGTGTAGTAGTAAGTGCAGGCTACTATGCGCACTCAATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
67854812 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
* * * *
67854863 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATTG--TT-GGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC--AATGACTTCGAT
* *
67854912 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTA
67854948 TCAGATAGCT
Statistics
Matches: 162, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
49 34 0.21
50 34 0.21
51 84 0.52
52 7 0.04
53 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (51 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
Found at i:67857416 original size:15 final size:15
Alignment explanation
Indices: 67857392--67857422 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67857382 CAAAATATAG
*
67857392 ATTTTGGTTTTATTT
1 ATTTTAGTTTTATTT
67857407 ATTTTAGTTTTATTT
1 ATTTTAGTTTTATTT
67857422 A
1 A
67857423 ATAATTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.10, T:0.71
Consensus pattern (15 bp):
ATTTTAGTTTTATTT
Found at i:67858929 original size:517 final size:517
Alignment explanation
Indices: 67857956--67858989 Score: 1987
Period size: 517 Copynumber: 2.0 Consensus size: 517
67857946 ACTTTATGGG
*
67857956 GTAATTATAAACCTATACAATTTCCACAAAGTTTATCAAACTTTATAACCATTAACTTATAAATG
1 GTAATTATAAACCTATACAATTTCCACAAAGTTTATCAAACTTTATAACCATCAACTTATAAATG
67858021 AGTAAGTTCATCAATACCACATATATTTTTCATTCCTAACATAACCATCAACTTGTAAAACGTAT
66 AGTAAGTTCATCAATACCACATATATTTTTCATTCCTAACATAACCATCAACTTGTAAAACGTAT
67858086 TACACAATCATTAAGCTTTTCATAATACTATGAACCACTCCATTTACTTACTTTCCATTTCATTT
131 TACACAATCATTAAGCTTTTCATAATACTATGAACCACTCCATTTACTTACTTTCCATTTCATTT
67858151 ACTTAGCATAACTTAAATAACATTATCAATTCATGAATTAGTGCATTTATCCATGACATAGATAA
196 ACTTAGCATAACTTAAATAACATTATCAATTCATGAATTAGTGCATTTATCCATGACATAGATAA
* *
67858216 ATTTGTCCATAACATAAATAGATCTCTCACGCACGAATACGTTATTTAACTCATCAATCTTGTTT
261 ATTCGTCCATAACATAAATAGATCTCACACGCACGAATACGTTATTTAACTCATCAATCTTGTTT
67858281 TTCATCATATTACATCTCAACTCTAAACTTACCGTTTCATTACCTTTTCTTACTTGTTTCATTTT
326 TTCATCATATTACATCTCAACTCTAAACTTACCGTTTCATTACCTTTTCTTACTTGTTTCATTTT
*
67858346 CATAATATAAGACATAAGCTTAAACATCACCCACATGATAAACCATTTCGTTAGAAAATACATAC
391 CATAATATAAGACATAAGCTTAAACATCACCCACATGATAAACCATTTCATTAGAAAATACATAC
67858411 TTTTATTCTTACCACCCTTTCATGAACATAAGCATATTTTCATTTGACACTTACCCTTTCAA
456 TTTTATTCTTACCACCCTTTCATGAACATAAGCATATTTTCATTTGACACTTACCCTTTCAA
*
67858473 GTAATTATAAACCTATACAATTTCCACAAAGTTTATCAAACTTTATAATCATCAACTTATAAATG
1 GTAATTATAAACCTATACAATTTCCACAAAGTTTATCAAACTTTATAACCATCAACTTATAAATG
67858538 AGTAAGTTCATCAATACCACATATATTTTTCATTCCTAACATAACCATCAACTTGTAAAACGTAT
66 AGTAAGTTCATCAATACCACATATATTTTTCATTCCTAACATAACCATCAACTTGTAAAACGTAT
67858603 TACACAATCATTAAGCTTTTCATAATACTATGAACCACTCCATTTACTTACTTTCCATTTCATTT
131 TACACAATCATTAAGCTTTTCATAATACTATGAACCACTCCATTTACTTACTTTCCATTTCATTT
67858668 ACTTAGCATAACTTAAATAACATTATCAATTCATGAATTAGTGCATTTATCCATGACATAGATAA
196 ACTTAGCATAACTTAAATAACATTATCAATTCATGAATTAGTGCATTTATCCATGACATAGATAA
* * *
67858733 ATTCGTCCATAACATAAATAGATTTCACACGCACGAATATGTTATTTAACTCATCAATCTTTTTT
261 ATTCGTCCATAACATAAATAGATCTCACACGCACGAATACGTTATTTAACTCATCAATCTTGTTT
67858798 TTCATCATATTACATCTCAACTCTAAACTTACCGTTTCATTACCTTTTCTTACTTGTTTCATTTT
326 TTCATCATATTACATCTCAACTCTAAACTTACCGTTTCATTACCTTTTCTTACTTGTTTCATTTT
*
67858863 CATAATATAAGACATAAGCTTAAACATCACCCACATGATAAACGATTTCATTAGAAAATACATAC
391 CATAATATAAGACATAAGCTTAAACATCACCCACATGATAAACCATTTCATTAGAAAATACATAC
67858928 TTTTATTCTTACCACCCTTTCATGAACATAAGCATATTTTCATTTGACACTTACCCTTTCAA
456 TTTTATTCTTACCACCCTTTCATGAACATAAGCATATTTTCATTTGACACTTACCCTTTCAA
67858990 TGCATAACTT
Statistics
Matches: 508, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
517 508 1.00
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.37
Consensus pattern (517 bp):
GTAATTATAAACCTATACAATTTCCACAAAGTTTATCAAACTTTATAACCATCAACTTATAAATG
AGTAAGTTCATCAATACCACATATATTTTTCATTCCTAACATAACCATCAACTTGTAAAACGTAT
TACACAATCATTAAGCTTTTCATAATACTATGAACCACTCCATTTACTTACTTTCCATTTCATTT
ACTTAGCATAACTTAAATAACATTATCAATTCATGAATTAGTGCATTTATCCATGACATAGATAA
ATTCGTCCATAACATAAATAGATCTCACACGCACGAATACGTTATTTAACTCATCAATCTTGTTT
TTCATCATATTACATCTCAACTCTAAACTTACCGTTTCATTACCTTTTCTTACTTGTTTCATTTT
CATAATATAAGACATAAGCTTAAACATCACCCACATGATAAACCATTTCATTAGAAAATACATAC
TTTTATTCTTACCACCCTTTCATGAACATAAGCATATTTTCATTTGACACTTACCCTTTCAA
Found at i:67867378 original size:40 final size:39
Alignment explanation
Indices: 67867283--67867410 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
67867273 TGCTGGAAAT
* * * *
67867283 TATATCCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
* *
67867322 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
67867362 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
67867402 TATATCCGG
1 TATATCCGG
67867411 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 27 0.35
40 48 0.62
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:67875523 original size:21 final size:22
Alignment explanation
Indices: 67875491--67875532 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
67875481 TTCTCTTTGC
67875491 TTTAGTTTAATTAGTTAAATAG
1 TTTAGTTTAATTAGTTAAATAG
*
67875513 TTTAG-TTAATTAGTTTAATA
1 TTTAGTTTAATTAGTTAAATA
67875533 AACAACCCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (22 bp):
TTTAGTTTAATTAGTTAAATAG
Found at i:67878194 original size:40 final size:39
Alignment explanation
Indices: 67878026--67878196 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
67878016 AGAAATTGAA
* *
67878026 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
67878066 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
67878106 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
67878146 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
67878186 TGATATCCGGG
1 TGATATCCGGG
67878197 TTAAAGTCCC
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:67886095 original size:39 final size:40
Alignment explanation
Indices: 67886037--67886137 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
67886027 AAATTGAATG
* *
67886037 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
67886076 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
67886116 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
67886138 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:67886130 original size:40 final size:40
Alignment explanation
Indices: 67886037--67886218 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
67886027 AAATTGAATG
* * * * *
67886037 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
67886076 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
67886116 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
67886156 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
67886196 ATATCCGGG-TAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
67886219 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 44 0.36
40 75 0.62
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:67889284 original size:41 final size:39
Alignment explanation
Indices: 67889176--67889327 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 39
67889166 ATCACGATTT
* *
67889176 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATCACTA
*
67889216 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAG-AAT-CACTA
* * * ** *
67889257 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATCACTA
* * *
67889297 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
67889328 TCATTCAATT
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 61 0.66
41 30 0.33
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATCACTA
Found at i:67894147 original size:40 final size:40
Alignment explanation
Indices: 67894000--67894164 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
67893990 AATACAACCA
* * *
67894000 GATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGCCCG
1 GATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGCCCG
* ** *
67894040 GATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGCCCG
* * * * *
67894080 GATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
** * * *
67894120 GATATAATTTCCAGCATAAATGTCTTCGGGACTTAGCCCG
1 GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
67894160 GATAT
1 GATAT
67894165 CATTCAATTG
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
Found at i:67895422 original size:17 final size:18
Alignment explanation
Indices: 67895402--67895438 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
67895392 ACTTTTCTTC
*
67895402 CTTTCTTT-TTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
67895419 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
67895437 CT
1 CT
67895439 CTCATGTACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:67896379 original size:27 final size:27
Alignment explanation
Indices: 67896348--67896421 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
67896338 AGGGGCATTT
67896348 CAGTCATTTTACCACATAAGGGAAAAA
1 CAGTCATTTTACCACATAAGGGAAAAA
* * * *
67896375 TAGTCATTTTACCTCATATGGGTAAAA
1 CAGTCATTTTACCACATAAGGGAAAAA
67896402 CAGTCATTTTACCACA-AAGG
1 CAGTCATTTTACCACATAAGG
67896422 TGGTGTAAGT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.08
27 37 0.93
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAGGGAAAAA
Found at i:67900181 original size:27 final size:27
Alignment explanation
Indices: 67900157--67900227 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
67900147 TAGGGGCATT
67900157 TCAATCATTTTACCACATAAAGGCAAAA
1 TCAATCATTTTACCACATAAAGGC-AAA
*
67900185 T-AATCATTTTACCTCATAAAGGCAAA
1 TCAATCATTTTACCACATAAAGGCAAA
* *
67900211 ACAGTCATTTTACCACA
1 TCAATCATTTTACCACA
67900228 ATGGAGGACT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
TCAATCATTTTACCACATAAAGGCAAA
Found at i:67905686 original size:38 final size:38
Alignment explanation
Indices: 67905635--67905711 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
67905625 GTTATCATTT
67905635 GAGGGCTTAGAGATACATCAGAATCAAGTAGGAACTAA
1 GAGGGCTTAGAGATACATCAGAATCAAGTAGGAACTAA
67905673 GAGGGCTTAGAGATACATCAGAATCAAGTAGGAACTAA
1 GAGGGCTTAGAGATACATCAGAATCAAGTAGGAACTAA
67905711 G
1 G
67905712 GGGGGACGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.13, G:0.27, T:0.18
Consensus pattern (38 bp):
GAGGGCTTAGAGATACATCAGAATCAAGTAGGAACTAA
Found at i:67906665 original size:28 final size:26
Alignment explanation
Indices: 67906573--67906684 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
67906563 AGGAAGCGTC
* *
67906573 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
67906600 CTGGTGGCTTTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
67906627 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
67906655 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
67906681 CTGG
1 CTGG
67906685 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:67906679 original size:54 final size:54
Alignment explanation
Indices: 67906573--67906684 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
67906563 AGGAAGCGTC
* * *
67906573 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
67906627 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
67906681 CTGG
1 CTGG
67906685 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:67909632 original size:44 final size:41
Alignment explanation
Indices: 67909535--67909633 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 41
67909525 CAATGATATT
*
67909535 TGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATCTAA
1 TGGCACTAAGTGTGCGATCCAAAATAGCTTCGGCTATCTAA
* * *
67909576 -GGCACTAAGTGTGCGATACCGAGATAGCTTCGGTTAAT-TGAAA
1 TGGCACTAAGTGTGCGAT-CCAAAATAGCTTCGGCT-ATCT--AA
67909619 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
67909634 AGAATCATTC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
40 17 0.35
41 14 0.29
42 2 0.04
43 2 0.04
44 14 0.29
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATCCAAAATAGCTTCGGCTATCTAA
Found at i:67910023 original size:16 final size:17
Alignment explanation
Indices: 67910002--67910034 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
67909992 CACATTGAAG
67910002 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
67910018 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
67910035 CTTCTTACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:67910687 original size:32 final size:32
Alignment explanation
Indices: 67910651--67910725 Score: 123
Period size: 32 Copynumber: 2.3 Consensus size: 32
67910641 TCTCAATTGG
* *
67910651 GCCTAGCCCATCTCAGAACCAATATCAGTTGA
1 GCCTAGCCCATATCAGAACAAATATCAGTTGA
*
67910683 GCCTAGCCCATATCAGAACAAATATCAGTTGG
1 GCCTAGCCCATATCAGAACAAATATCAGTTGA
67910715 GCCTAGCCCAT
1 GCCTAGCCCAT
67910726 TTCAATATCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (32 bp):
GCCTAGCCCATATCAGAACAAATATCAGTTGA
Found at i:67915872 original size:16 final size:16
Alignment explanation
Indices: 67915848--67915878 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67915838 ATTCTTCACT
67915848 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
67915864 TACTTACTTACTTAA
1 TACTCACTTACTTAA
67915879 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:67915884 original size:20 final size:20
Alignment explanation
Indices: 67915845--67915884 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67915835 AAAATTCTTC
* *
67915845 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
67915865 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
67915885 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:67916199 original size:53 final size:55
Alignment explanation
Indices: 67916117--67916275 Score: 198
Period size: 53 Copynumber: 2.9 Consensus size: 55
67916107 ATCCTTTTGA
* * *
67916117 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGATATCCTTGCGTTAT-G-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
* * * **
67916170 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCC-TTGCCTTATAGT
* *
67916225 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA
67916276 GAGACCTTGT
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 41 0.47
54 1 0.01
55 41 0.47
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (55 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
Found at i:67917799 original size:40 final size:40
Alignment explanation
Indices: 67917740--67917908 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
67917730 CGGGACTTTA
* * *
67917740 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
67917780 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
67917820 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
67917860 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
67917900 CCCGGATAT
1 CCCGGATAT
67917909 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:67925918 original size:39 final size:40
Alignment explanation
Indices: 67925746--67925922 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
67925736 ACCAAGGCCA
* * * * * *
67925746 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * *
67925785 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
67925825 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
67925865 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
67925904 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
67925923 CATTCAATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 39 0.33
40 77 0.65
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:67932523 original size:27 final size:28
Alignment explanation
Indices: 67932467--67932536 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
67932457 AAATTTGTAC
*
67932467 AGCACTAAGTGTGCAAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
67932495 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
67932522 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67932537 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:67932547 original size:27 final size:27
Alignment explanation
Indices: 67932491--67932548 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
67932481 AAGTTTGATC
* * *
67932491 ATATAGCACTAAGTGTGCGAGTTGATT
1 ATATAGCACTAAGTGTGCGAGCTCACT
67932518 ATATAGCACTAAGTGTGCG-GACTCACT
1 ATATAGCACTAAGTGTGCGAG-CTCACT
67932545 ATAT
1 ATAT
67932549 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAGCTCACT
Found at i:67940339 original size:27 final size:28
Alignment explanation
Indices: 67940283--67940352 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
67940273 AAATTTGTAC
67940283 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
67940311 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
67940338 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67940353 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:67940363 original size:27 final size:27
Alignment explanation
Indices: 67940283--67940364 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
67940273 AAATTTGTAC
* *
67940283 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
67940311 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
67940338 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
67940365 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:67954406 original size:43 final size:43
Alignment explanation
Indices: 67954358--67954637 Score: 470
Period size: 43 Copynumber: 6.5 Consensus size: 43
67954348 TATTATAATT
67954358 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* *
67954401 GGGCCTTCGTGCCTAGCAGGCTTCTTGCCAGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* * *
67954444 GGGCCTTCGTGCCTAGTAGGCTTCTTGCCAGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* *
67954487 AGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
67954530 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
* * *
67954573 GGGCCTTCGTGCCTAGGAGGCTTTGTGTCGGTGATGTGTATTC
1 GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
67954616 GGGCCTTCGTGCCTAGCAGGCT
1 GGGCCTTCGTGCCTAGCAGGCT
67954638 ATGATGCTGG
Statistics
Matches: 223, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 223 1.00
ACGTcount: A:0.10, C:0.24, G:0.34, T:0.32
Consensus pattern (43 bp):
GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTC
Found at i:67954675 original size:45 final size:45
Alignment explanation
Indices: 67954358--67954715 Score: 160
Period size: 43 Copynumber: 8.2 Consensus size: 45
67954348 TATTATAATT
* ** * *
67954358 GGGCCTTCGTGCCTAGCAGGCT-TCGTGCCGGTGATG-T-GTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA-GATACTATTC
* ** *
67954401 GGGCCTTCGTGCCTAGCAGGCT-TCTTGCCAGTGATG-T-GTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA-GATACTATTC
* * ** *
67954444 GGGCCTTCGTGCCTAGTAGGCT-TCTTGCCAGTGATG-T-GTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA-GATACTATTC
* * ** ** *
67954487 AGGCCTTCGTGCCTAGCAGGCT-TCGTGCTGGTGATG-T-GTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA-GATACTATTC
* ** * *
67954530 GGGCCTTCGTGCCTAGCAGGCT-TCGTGCCGGTGATG-T-GTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA-GATACTATTC
* * ** * * *
67954573 GGGCCTTCGTGCCTAGGAGGCT-TTGTGTCGGTGATG-T-GTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA-GATACTATTC
* * **
67954616 GGGCCTTCGTGCCTAGCAGGCTATGATGCTGGTG-GAATACTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAG-ATACTATTC
* *
67954661 GGGCCTTTGAGCCTAGCATGCTATAATGCCAGTGAGATACTATTC
1 GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGATACTATTC
*
67954706 GGGCTTTCGA
1 GGGCCTTCGA
67954716 TATCGGGCCT
Statistics
Matches: 283, Mismatches: 27, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.00
43 223 0.79
44 8 0.03
45 50 0.18
46 1 0.00
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (45 bp):
GGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGATACTATTC
Found at i:67958854 original size:43 final size:43
Alignment explanation
Indices: 67958784--67959191 Score: 609
Period size: 43 Copynumber: 9.5 Consensus size: 43
67958774 ATTATAATTA
* * * * *
67958784 GGCCTTCGTGCCTAGTAGCCTTTGTGCCGGTGGTGTGTATTCA
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
67958827 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
* ** * *
67958870 GGCCTTCGTGCCTAGCAGGCTTCTTGCTAGTGATGTGAACTCG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
* * * *
67958913 GGTCTTTGTGCCTAGCAAGCTTCGTGCCGGTGATGTGTATCCG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
* *
67958956 GGCCTTCGTGCCTAGCAGGCTTCTTGCCAGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
*
67958999 GGCCTTCGTGCCTAGCAGGGTTCGTGCCGGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
* *
67959042 GGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATTTG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
* * *
67959085 GGCCTTCGTGCCTAGCAGGCTTCTTACCGGTGATGTGTATTTG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
*
67959128 GGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
67959171 GGCCTTCGTGCCTAGCAGGCT
1 GGCCTTCGTGCCTAGCAGGCT
67959192 ATGATGCTAG
Statistics
Matches: 328, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 328 1.00
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.32
Consensus pattern (43 bp):
GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
Found at i:67959238 original size:45 final size:45
Alignment explanation
Indices: 67959165--67959269 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 45
67959155 TGGTGATGTG
* * * *
67959165 TATTCGGGCCTTCGTGCCTAGCAGGCTATGATGCTAGTG-GAATAC
1 TATTCGGGCCTTCGAGCCAAGCAGGCTATAATGCCAGTGAG-ATAC
* * *
67959210 TATTCGGGCCTTTGAGCCAAGCATGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCAAGCAGGCTATAATGCCAGTGAGATAC
*
67959255 TATTCGGGCTTTCGA
1 TATTCGGGCCTTCGA
67959270 TATCGGGCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 49 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCAAGCAGGCTATAATGCCAGTGAGATAC
Found at i:67967003 original size:14 final size:14
Alignment explanation
Indices: 67966984--67967016 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
67966974 AATCAATTTT
*
67966984 CCCAAAAGTAATTC
1 CCCAAAAGCAATTC
67966998 CCCAAAAGCAATTC
1 CCCAAAAGCAATTC
67967012 CCCAA
1 CCCAA
67967017 TTCTTTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.36, G:0.06, T:0.15
Consensus pattern (14 bp):
CCCAAAAGCAATTC
Found at i:67970374 original size:40 final size:40
Alignment explanation
Indices: 67970315--67970522 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
67970305 CAATTGAATG
* * * *
67970315 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
67970355 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
67970395 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
67970435 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
67970475 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
67970515 ATATCCGG
1 ATATCCGG
67970523 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:67970453 original size:80 final size:80
Alignment explanation
Indices: 67970317--67970522 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
67970307 ATTGAATGAT
* * ** * * *
67970317 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
67970381 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
67970397 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
67970462 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
67970477 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
67970523 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:67978415 original size:40 final size:40
Alignment explanation
Indices: 67978356--67978563 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
67978346 CAATTGAATG
* * * *
67978356 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
67978396 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
67978436 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
67978476 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
67978516 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
67978556 ATATCCGG
1 ATATCCGG
67978564 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:67978494 original size:80 final size:80
Alignment explanation
Indices: 67978358--67978563 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
67978348 ATTGAATGAT
* * ** * * *
67978358 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
67978422 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
67978438 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
67978503 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
67978518 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
67978564 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:67982511 original size:47 final size:47
Alignment explanation
Indices: 67982448--67982737 Score: 458
Period size: 47 Copynumber: 6.2 Consensus size: 47
67982438 CCCTTCGGGA
* *
67982448 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
67982495 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67982542 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67982589 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
67982636 CTTATCAC--ATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67982681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
67982728 CTTATCACAT
1 CTTATCACAT
67982738 CTACACACCT
Statistics
Matches: 223, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 43 0.19
47 180 0.81
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:67982673 original size:92 final size:92
Alignment explanation
Indices: 67982448--67982743 Score: 466
Period size: 92 Copynumber: 3.2 Consensus size: 92
67982438 CCCTTCGGGA
*
67982448 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACA--TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
67982513 CTTCACATCCATCACATCGGCCATTAGGT
64 TTTCACATTCATCACATCGGCCATTAGGC
*
67982542 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTA--TCACATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * * *
67982607 TTTCACATTCATCACGTTGGCCACTCGGC
64 TTTCACATTCATCACATCGGCCATTAGGC
67982636 CTTATCACATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 CTTATCACATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
67982701 TCACATTCATCACATCGGCCATTAGGC
66 TCACATTCATCACATCGGCCATTAGGC
*
67982728 CTTATCACATCTACAC
1 CTTATCACATATACAC
67982744 ACCTTGTACA
Statistics
Matches: 185, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
92 98 0.53
94 83 0.45
96 4 0.02
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.33
Consensus pattern (92 bp):
CTTATCACATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGC
Found at i:67986184 original size:39 final size:39
Alignment explanation
Indices: 67986130--67986273 Score: 189
Period size: 39 Copynumber: 3.7 Consensus size: 39
67986120 TTCAGTGATG
67986130 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
67986169 TATATCCGGACTTAAGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
67986208 TATAACCGGACTTAAGGTACGCAGGCTACGTGCTAGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
67986247 TATGTCCGGGCTAAAGTTCCGTAGGCT
1 TATATCCGGACTTAAGGTCCGCAGGCT
67986274 TCGAGCTGGT
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:67986509 original size:2 final size:2
Alignment explanation
Indices: 67986502--67986532 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
67986492 TCAAAGAAGA
67986502 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67986533 AATGTGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67993054 original size:39 final size:39
Alignment explanation
Indices: 67993000--67993105 Score: 185
Period size: 39 Copynumber: 2.7 Consensus size: 39
67992990 TTCAGTGATG
*
67993000 TATATCTGGACTTAAGGTCCGCAGGCTATGCGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGCGCTGGAAT
*
67993039 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGCGCTGGAAT
*
67993078 TATAACCGGACTTAAGGTCCGCAGGCTA
1 TATATCCGGACTTAAGGTCCGCAGGCTA
67993106 CATGCCGGAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGCGCTGGAAT
Found at i:67993152 original size:78 final size:77
Alignment explanation
Indices: 67993007--67993163 Score: 171
Period size: 78 Copynumber: 2.0 Consensus size: 77
67992997 ATGTATATCT
* * *
67993007 GGACTTAAGGTCCGCAGGCTATGCGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTATGTGC
1 GGACTTAAGGTCCGCAGGCTATGCGCTGGAAATATATCCGGACTTAAGGTCCACAGGCTATGAGC
67993072 TGGAATTATAACC
66 TGGAATTAT-ACC
* *
67993085 GGACTTAAGGTCCGCAGGCTACATGC-C-GGAAATATGTCCGGGC-T-AGAGTCCCACAGGCT-T
1 GGACTTAAGGTCCGCAGGCT--ATGCGCTGGAAATATATCCGGACTTAAG-GT-CCACAGGCTAT
*
67993145 CGAGCTGGTATTATACC
62 -GAGCTGGAATTATACC
67993162 GG
1 GG
67993164 GTTTAAATTC
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
76 2 0.03
77 9 0.13
78 52 0.76
79 1 0.01
80 4 0.06
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (77 bp):
GGACTTAAGGTCCGCAGGCTATGCGCTGGAAATATATCCGGACTTAAGGTCCACAGGCTATGAGC
TGGAATTATACC
Found at i:67998461 original size:20 final size:20
Alignment explanation
Indices: 67998438--67998488 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
67998428 ACCATGGCAT
*
67998438 GCATTAAATGACTTAAATGG
1 GCATTAGATGACTTAAATGG
67998458 GCATTAGATGACTTAAATGG
1 GCATTAGATGACTTAAATGG
67998478 GCATTAGATGA
1 GCATTAGATGA
67998489 TGGTTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (20 bp):
GCATTAGATGACTTAAATGG
Found at i:67999558 original size:43 final size:42
Alignment explanation
Indices: 67999402--67999559 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
67999392 ATGTGTTAAT
*
67999402 GTGTAAGACCACGTCTGAGACGTTGGCATCA-ACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCATA-TT-TGA-TTAC
* * * * *
67999446 GTGTAAGACCATGTTTGGGACATCGGCATCATATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTAC
*
67999488 GTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGA-CGTTGGCATC-ATATTTGATTAC
*
67999531 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
67999560 TGTACGAGTT
Statistics
Matches: 94, Mismatches: 14, Indels: 13
0.78 0.12 0.11
Matches are distributed among these distances:
42 27 0.29
43 37 0.39
44 29 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTAC
Found at i:68001516 original size:19 final size:19
Alignment explanation
Indices: 68001492--68001531 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
68001482 TTCTGATTTT
*
68001492 GTTCCAATTCAAGGATAGA
1 GTTCCAATTCAAGGACAGA
* *
68001511 GTTCCACTTCGAGGACAGA
1 GTTCCAATTCAAGGACAGA
68001530 GT
1 GT
68001532 ATTCTTGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (19 bp):
GTTCCAATTCAAGGACAGA
Found at i:68009284 original size:16 final size:16
Alignment explanation
Indices: 68009263--68009298 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
68009253 CTAGATCGAC
*
68009263 AAAAGCCGAAATGCCA
1 AAAAGCCAAAATGCCA
*
68009279 AAAAGCCAAAATGTCA
1 AAAAGCCAAAATGCCA
68009295 AAAA
1 AAAA
68009299 ACTGAAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.58, C:0.19, G:0.14, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATGCCA
Found at i:68009559 original size:29 final size:29
Alignment explanation
Indices: 68009521--68009634 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 29
68009511 GAATGAGTAT
*
68009521 AAGGTGATTTGGGCCTAACGGGCCATATA
1 AAGGTGATTTGGGCCTAATGGGCCATATA
* * *
68009550 AAGGTGATTTGGACCTGATGGGCCATATG
1 AAGGTGATTTGGGCCTAATGGGCCATATA
* * *
68009579 AATGTGAATTGGGCCTGATGGGCCATATA
1 AAGGTGATTTGGGCCTAATGGGCCATATA
* *
68009608 AATGAGA-TTGGGCC-AAGTGGGCCATAT
1 AAGGTGATTTGGGCCTAA-TGGGCCATAT
68009635 GCATGTATGT
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
27 1 0.01
28 17 0.23
29 56 0.76
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (29 bp):
AAGGTGATTTGGGCCTAATGGGCCATATA
Found at i:68016021 original size:68 final size:67
Alignment explanation
Indices: 68015949--68016125 Score: 200
Period size: 67 Copynumber: 2.6 Consensus size: 67
68015939 CATCATGTGT
* * * *
68015949 ACAAGAGAGCTACGAGATACTATGTGATAGCTAGGTCACATGTGT-GATAC-GG-GATGTATACC
1 ACAAGAGAGCTACGAGATA--A-ATG-TAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACC
68016011 ATGTAG
62 ATGTAG
* * * *
68016017 ACAAGAGAGCTACGGGATAAATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACCATGT
68016082 AG
66 AG
* *
68016084 ACAAGAGAGCTACGAGATAAA-GTGGCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGG
68016126 TACTAAGTGT
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 17 0.18
65 5 0.05
66 21 0.22
67 33 0.35
68 18 0.19
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACCATGT
AG
Found at i:68018085 original size:30 final size:30
Alignment explanation
Indices: 68018049--68018114 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
68018039 TCTGTGGTAG
*
68018049 AGTATGAACGTGAATTTGTAAGACTCAGCA
1 AGTATGAACGCGAATTTGTAAGACTCAGCA
68018079 AGTATGAACGCGAATTTGTAAGACTCAGCA
1 AGTATGAACGCGAATTTGTAAGACTCAGCA
68018109 AGTATG
1 AGTATG
68018115 CCCAGGAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (30 bp):
AGTATGAACGCGAATTTGTAAGACTCAGCA
Found at i:68025144 original size:39 final size:39
Alignment explanation
Indices: 68025068--68025193 Score: 200
Period size: 39 Copynumber: 3.2 Consensus size: 39
68025058 TATGGTAACC
* * *
68025068 CGCACAAATGCCTTCAGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTC-GGGCTTAGCCCGGATATCACAACT
68025108 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68025147 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
68025186 CGCA-AATT
1 CGCACAATT
68025194 CATACACATC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 4 0.05
39 64 0.78
40 14 0.17
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:68028874 original size:16 final size:16
Alignment explanation
Indices: 68028853--68028886 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
68028843 GTTGTAATGC
*
68028853 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
68028869 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
68028885 CC
1 CC
68028887 TTGAATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.38, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:68030437 original size:58 final size:57
Alignment explanation
Indices: 68030359--68030467 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 57
68030349 TGAATATAAG
* *
68030359 GTGACTTGGGCCTAACGGGCCATATAAAGGTGATTTGGGCCT-GATGGGCCATGTGAAT
1 GTGAATTGGGCCTAACGGGCCATATAAAGGAGA-TTGGGCCTAG-TGGGCCATGTGAAT
* * *
68030417 GTGAATTGGGCCTGATGGGCCATATAAATGAGATTGGGCCTAGTGGGCCAT
1 GTGAATTGGGCCTAACGGGCCATATAAAGGAGATTGGGCCTAGTGGGCCAT
68030468 ATGCATTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
57 16 0.36
58 29 0.64
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.26
Consensus pattern (57 bp):
GTGAATTGGGCCTAACGGGCCATATAAAGGAGATTGGGCCTAGTGGGCCATGTGAAT
Found at i:68030463 original size:28 final size:28
Alignment explanation
Indices: 68030359--68030469 Score: 125
Period size: 29 Copynumber: 3.9 Consensus size: 28
68030349 TGAATATAAG
* * *
68030359 GTGACTTGGGCCTAACGGGCCATATAAAG
1 GTGA-TTGGGCCTGATGGGCCATATAAAT
* *
68030388 GTGATTTGGGCCTGATGGGCCATGTGAAT
1 GTGA-TTGGGCCTGATGGGCCATATAAAT
68030417 GTGAATTGGGCCTGATGGGCCATATAAAT
1 GTG-ATTGGGCCTGATGGGCCATATAAAT
*
68030446 GAGATTGGGCCT-AGTGGGCCATAT
1 GTGATTGGGCCTGA-TGGGCCATAT
68030470 GCATTTATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 19 0.27
29 50 0.70
30 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.26
Consensus pattern (28 bp):
GTGATTGGGCCTGATGGGCCATATAAAT
Found at i:68043938 original size:21 final size:21
Alignment explanation
Indices: 68043914--68043953 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
68043904 AAGTTCTTCC
*
68043914 TCTTCAGCAGCAACTTCCTCT
1 TCTTCAGAAGCAACTTCCTCT
* *
68043935 TCTTTAGAAGGAACTTCCT
1 TCTTCAGAAGCAACTTCCT
68043954 TCTCAACAAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (21 bp):
TCTTCAGAAGCAACTTCCTCT
Found at i:68046959 original size:93 final size:93
Alignment explanation
Indices: 68046851--68047022 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
68046841 GCCCATAAGT
* * *
68046851 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
68046916 CGAGCTCGGATGCCTAGTTACATATCTC
66 CGAGCTCGGATGCCTAGTTACATATCTC
* *
68046944 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
68047009 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
68047023 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATATCTC
Found at i:68047018 original size:46 final size:46
Alignment explanation
Indices: 68046843--68047018 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
68046833 TGTAACCTGC
* * *
68046843 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
68046889 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* ** *
68046935 ACATATCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
68046982 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
68047019 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.62
47 33 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:68051451 original size:41 final size:41
Alignment explanation
Indices: 68051392--68051513 Score: 156
Period size: 41 Copynumber: 3.0 Consensus size: 41
68051382 AAAAGCCACC
* * *
68051392 GGTGGATCCACGTTCGTCAAGCAACCATATGATCCTTAATTA
1 GGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAA-TA
* * *
68051434 -GTGGATCCACGGCCGTCAAGCAACCATGCGATTCTCAATA
1 GGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATA
* *
68051474 GGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAAT
1 GGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAAT
68051514 TTCTTCCTCT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
40 2 0.03
41 68 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATA
Found at i:68051866 original size:27 final size:27
Alignment explanation
Indices: 68051778--68052193 Score: 153
Period size: 27 Copynumber: 15.4 Consensus size: 27
68051768 ATCTACAAAC
** *
68051778 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTTGTAATTTTGTAAAT
* *
68051805 CAATGGTCTTTTTGTAATTTT-TGAAAGT
1 CAAGGGTATTTTTGTAATTTTGT-AAA-T
*
68051833 CAAGGGTATTTTTGTAATTTTGTAGAT
1 CAAGGGTATTTTTGTAATTTTGTAAAT
* * * * **
68051860 CAGGGGTACTTCTGTCATTTTCCAAAT
1 CAAGGGTATTTTTGTAATTTTGTAAAT
* **
68051887 CAAGGGT-TTTTTATTAATTTTCCAAAT
1 CAAGGGTATTTTT-GTAATTTTGTAAAT
* * **
68051914 -TAGAGGCATTTTTGTAATTTTACAAAT
1 CAAG-GGTATTTTTGTAATTTTGTAAAT
** ** *
68051941 CAAGGGTATTTCGGTAATTTTACAAGT
1 CAAGGGTATTTTTGTAATTTTGTAAAT
* * * ** *
68051968 TAAGAGTATTTTAGTAATTTTACAAGT
1 CAAGGGTATTTTTGTAATTTTGTAAAT
* ** ** ***
68051995 CGAGGGTATTTCAGTAATTTTACAGGG
1 CAAGGGTATTTTTGTAATTTTGTAAAT
** * **
68052022 CAAGGGTATTTCGGTAATTTTATAGGT
1 CAAGGGTATTTTTGTAATTTTGTAAAT
** **
68052049 TGAGGGTA-TTTTGATAATTTTCCAAAT
1 CAAGGGTATTTTTG-TAATTTTGTAAAT
* * * **
68052076 CAGGGGTATATTTGTTATTTTACAAAT
1 CAAGGGTATTTTTGTAATTTTGTAAAT
* * ** **
68052103 -AGAAGATATTTCGGTAATTTTCCAAAT
1 CA-AGGGTATTTTTGTAATTTTGTAAAT
* **
68052130 CAGGGGTA-TTTTGCTAATTTTGTAAGC
1 CAAGGGTATTTTTG-TAATTTTGTAAAT
* *
68052157 CAAGGGTA-TTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTTGTAATTTTGTAAAT
68052183 CAAGGGTATTT
1 CAAGGGTATTT
68052194 CAGTAATCCT
Statistics
Matches: 299, Mismatches: 77, Indels: 26
0.74 0.19 0.06
Matches are distributed among these distances:
26 33 0.11
27 232 0.78
28 33 0.11
29 1 0.00
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTTGTAATTTTGTAAAT
Found at i:68051959 original size:54 final size:54
Alignment explanation
Indices: 68051771--68052176 Score: 196
Period size: 54 Copynumber: 7.5 Consensus size: 54
68051761 TTGGTAAATC
* ** ** *
68051771 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCA-ATGGTCTTTTTGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTACAAATTAGA-GGTATTTTTGTAATTT
** ** ** * * * * * *
68051825 TTGAAAGTCAAGGGTATTTTTGTAATTTTGTAGATCAGGGGTACTTCTGTCATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTACAAATTAGAGGTATTTTTGTAATTT
* * * * * *
68051880 TCCAAATCAAGGGTTTTTTATTAATTTTCCAAATTAGAGGCATTTTTGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTACAAATTAGAGGTATTTTTGTAATTT
* * *
68051934 TACAAATCAAGGGTATTTCGGTAATTTTACAAGTTA-AGAGTATTTTAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTACAAATTAGAG-GTATTTTTGTAATTT
* * **** **
68051988 TACAAGTCGAGGGTATTTCAGTAATTTTACAGGGCA-AGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTACAAATTAGA-GGTATTTTTGTAATTT
* ** ** * * * * * *
68052042 TATAGGTTGAGGGTATTT-TGATAATTTTCCAAATCAGGGGTATATTTGTTATTT
1 TACAAATCAAGGGTATTTCAG-TAATTTTACAAATTAGAGGTATTTTTGTAATTT
* * * * * *
68052096 TACAAAT-AGAAGATATTTCGGTAATTTTCCAAATCAGGGGTA-TTTTGCTAATTT
1 TACAAATCA-AGGGTATTTCAGTAATTTTACAAATTAGAGGTATTTTTG-TAATTT
** **
68052150 TGTAAGCCAAGGGTATTT-AGTAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTT
68052177 GTAAACCAAG
Statistics
Matches: 270, Mismatches: 72, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
53 15 0.06
54 211 0.78
55 44 0.16
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.42
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTACAAATTAGAGGTATTTTTGTAATTT
Found at i:68051961 original size:81 final size:80
Alignment explanation
Indices: 68051837--68052150 Score: 245
Period size: 81 Copynumber: 3.9 Consensus size: 80
68051827 GAAAGTCAAG
** * * * * * * *
68051837 GGTATTTTTGTAATTTTGTAGATCAGGGGTACTTCTGTCATTTTCCAAATCAAGGGTTTTTTATT
1 GGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTA-T
68051902 AATTTTCCAAATTAGA
65 AATTTTCCAAATTAGA
* * * *
68051918 GGCATTTTTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAGTTAAGAGTATTTTAGT
1 GGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTA-T
* * *
68051983 AATTTTAC-AAGTCGA
65 AATTTTCCAAATTAGA
** *** * ** **
68051998 GGGTATTTCAGTAATTTTACAGGGCAAGGGTATTTCGGTAATTTTATAGGTTGAGGGTATTTTGA
1 -GGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTT-A
* *
68052063 TAATTTTCCAAATCAGG
64 TAATTTTCCAAATTAGA
* * * * * * *
68052080 GGTATATTTGTTATTTTACAAAT-AGAAGATATTTCGGTAATTTTCCAAATCAGGGGTATTTTGC
1 GGTATTTTTGTAATTTTACAAATCA-AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTT-A
68052144 TAATTTT
64 TAATTTT
68052151 GTAAGCCAAG
Statistics
Matches: 180, Mismatches: 49, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
80 6 0.03
81 170 0.94
82 4 0.02
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (80 bp):
GGTATTTTTGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTATA
ATTTTCCAAATTAGA
Found at i:68052177 original size:26 final size:26
Alignment explanation
Indices: 68052133--68052200 Score: 100
Period size: 26 Copynumber: 2.5 Consensus size: 26
68052123 TCCAAATCAG
* *
68052133 GGGTATTTTGCTAATTTTGTAAGCCAA
1 GGGTATTTAG-TAATTTTGTAAACCAA
68052160 GGGTATTTAGTAATTTTGTAAACCAA
1 GGGTATTTAGTAATTTTGTAAACCAA
68052186 GGGTATTTCAGTAAT
1 GGGTATTT-AGTAAT
68052201 CCTAACCTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 23 0.61
27 15 0.39
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTGTAAACCAA
Found at i:68052220 original size:27 final size:26
Alignment explanation
Indices: 68052190--68052293 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 26
68052180 AACCAAGGGT
68052190 ATTTCAGTAATCCTAACCTACAGGGGC
1 ATTTCAGTAAT-CTAACCTACAGGGGC
* * *
68052217 ATTTTAGTAAGTCTATCCTATAGGGGC
1 ATTTCAGTAA-TCTAACCTACAGGGGC
* *
68052244 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAA-TCTAACCTACAGGGGC
* *
68052271 ATTTCAGTATTACTAGCCTACAG
1 ATTTCAGTAAT-CTAACCTACAG
68052294 ATATGAGATT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.02
27 63 0.97
28 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (26 bp):
ATTTCAGTAATCTAACCTACAGGGGC
Found at i:68054968 original size:22 final size:22
Alignment explanation
Indices: 68054935--68054996 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
68054925 AATACGTTTG
68054935 GCACACAA-CCATAATCAGGTTA
1 GCACA-AAGCCATAATCAGGTTA
* * *
68054957 GCACAGAGCCAT-ATGTAGGTTG
1 GCACAAAGCCATAAT-CAGGTTA
*
68054979 GCGCAAAGCCATAATCAG
1 GCACAAAGCCATAATCAG
68054997 AATAATTGGC
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
21 3 0.10
22 26 0.84
23 2 0.06
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (22 bp):
GCACAAAGCCATAATCAGGTTA
Found at i:68055199 original size:41 final size:41
Alignment explanation
Indices: 68055139--68055259 Score: 161
Period size: 41 Copynumber: 3.0 Consensus size: 41
68055129 AAAAGGACCG
** * * * *
68055139 GTGGATCCACGGTCATCAAGCAACCATACGATCCTTAATCG
1 GTGGATCCACACTCGTCAAGCAACCATGCGATCCTCAATCA
*
68055180 GTGGATCCACACTTGTCAAGCAACCATGCGATCCTCAATCA
1 GTGGATCCACACTCGTCAAGCAACCATGCGATCCTCAATCA
**
68055221 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 GTGGATCCACACTCGTCAAGCAACCATGCGATCCTCAAT
68055260 TTCTTCCTCT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (41 bp):
GTGGATCCACACTCGTCAAGCAACCATGCGATCCTCAATCA
Found at i:68055526 original size:27 final size:27
Alignment explanation
Indices: 68055496--68055566 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
68055486 TTTCACCTTA
*
68055496 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAAATCTACAAAC
* * * *
68055523 CAAGGGTATTTCGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAAATCTACAAAC
* *
68055550 CAATGGTATTTTTGTAA
1 CAAGGGTATTTTGGTAA
68055567 TTTTTGAAAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAAATCTACAAAC
Found at i:68055567 original size:27 final size:27
Alignment explanation
Indices: 68055518--68055945 Score: 219
Period size: 27 Copynumber: 15.9 Consensus size: 27
68055508 GGTAAATCTA
* *
68055518 CAAACCAAGGGTATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * *
68055545 CAAACCAATGGTATTTTTGTAATTTTTG
1 CAAATCAAGGGTATTTCTGTAA-TTTTG
*
68055573 -AAAGTCAAGGGTATTTCTGTAATTCTG
1 CAAA-TCAAGGGTATTTCTGTAATTTTG
* * * *
68055600 TAAATCAGGGGTATTTATGTAATTTTC
1 CAAATCAAGGGTATTTCTGTAATTTTG
* *
68055627 CAAATCAAGGGTATTTCGGTAATTTTC
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * * * *
68055654 CAAATTAGGGGTATTTTTTTAATTTTA
1 CAAATCAAGGGTATTTCTGTAATTTTG
*
68055681 CAAATCAAGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCT-GTAATTTTG
** * * *
68055708 CAGGTCGAGAGTATTTC-GATAATTTTA
1 CAAATCAAGGGTATTTCTG-TAATTTTG
* * * *
68055735 C-AGTCGAGGGTATTTCAGTAATTTTA
1 CAAATCAAGGGTATTTCTGTAATTTTG
** ** * *
68055761 CAGGTTGAGGGTATTTCGGTAATTTTA
1 CAAATCAAGGGTATTTCTGTAATTTTG
** * *
68055788 CAGGTCGATGGTATTTC-GATAATTTT-
1 CAAATCAAGGGTATTTCTG-TAATTTTG
* *
68055814 CAAAATCATGGGTATATT-TGTAATTTTA
1 C-AAATCAAGGGTAT-TTCTGTAATTTTG
* * * *
68055842 TAAATCGAGGGTATTTC-GATAATTATC
1 CAAATCAAGGGTATTTCTG-TAATTTTG
* *
68055869 CAAATCAGGGGTATTT-TGCTACTTTTG
1 CAAATCAAGGGTATTTCTG-TAATTTTG
* ** * **
68055896 TAAGCCAATGGTA-TTCAATAATTTTG
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * *
68055922 TAAACCAAGGGTATTTCAGTAATT
1 CAAATCAAGGGTATTTCTGTAATT
68055946 CTACCCTACA
Statistics
Matches: 320, Mismatches: 63, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
26 49 0.15
27 245 0.77
28 26 0.08
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCTGTAATTTTG
Found at i:68055582 original size:55 final size:54
Alignment explanation
Indices: 68055516--68055885 Score: 291
Period size: 54 Copynumber: 6.9 Consensus size: 54
68055506 TTGGTAAATC
* * **
68055516 TACAAACCAAGGGTATTTCGGTAATTTTGCAAACCAATGGTATTTTTGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTTTGCAAATCAGGGGTATTTTTGTAATTT
** * * * *
68055570 TTGAAAGTCAAGGGTATTTCTGTAATTCTGTAAATCAGGGGTATTTATGTAATTT
1 TACAAA-TCAAGGGTATTTCGGTAATTTTGCAAATCAGGGGTATTTTTGTAATTT
* * * *
68055625 TCCAAATCAAGGGTATTTCGGTAATTTTCCAAATTAGGGGTATTTTTTTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTTTGCAAATCAGGGGTATTTTTGTAATTT
* * ** * *
68055679 TACAAATCAAGGGTATTTTGGTAATTTTACAGGTC-GAGAGTA-TTTCGATAATTT
1 TACAAATCAAGGGTATTTCGGTAATTTTGCAAATCAG-GGGTATTTTTG-TAATTT
* * * * ** * **
68055733 TAC-AGTCGAGGGTATTTCAGTAATTTTACAGGT-TGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTTTGCAAATCAG-GGGTATTTTTGTAATTT
** * * * * *
68055786 TACAGGTCGATGGTATTTCGATAATTTT-CAAAATCATGGGTATATTTGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTTTGC-AAATCAGGGGTATTTTTGTAATTT
* * * * *
68055840 TATAAATCGAGGGTATTTCGATAATTATCCAAATCAGGGGTATTTT
1 TACAAATCAAGGGTATTTCGGTAATTTTGCAAATCAGGGGTATTTT
68055886 GCTACTTTTG
Statistics
Matches: 254, Mismatches: 53, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
53 46 0.18
54 163 0.64
55 45 0.18
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCGGTAATTTTGCAAATCAGGGGTATTTTTGTAATTT
Found at i:68055703 original size:81 final size:80
Alignment explanation
Indices: 68055516--68055884 Score: 278
Period size: 81 Copynumber: 4.6 Consensus size: 80
68055506 TTGGTAAATC
* * * * * *
68055516 TACAAACCAAGGGTATTTCGGTAATTTTGCAAACCAATGGTATTTTTG-TAATTTTTGAAAGTCA
1 TACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTA-TTTCGATAA-TTTTCAAA-TCA
* *
68055580 AGGGTATTTCTGTAATTC
63 GGGGTATTTCTGTAATTT
** * ** * * *
68055598 TGTAAATCAGGGGTATTTATGTAATTTTCCAAATCAAGGGTATTTCGGTAATTTTCCAAATTAGG
1 TACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTT-CAAATCAGG
* *
68055663 GGTATTTTTTTAATTT
65 GGTATTTCTGTAATTT
* ** * * *
68055679 TACAAATCAAGGGTATTTTGGTAATTTTACAGGTCGAGAGTATTTCGATAATTTT-ACAGTC-GA
1 TACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTCA-AATCAG-
*
68055742 GGGTATTTCAGTAATTT
64 GGGTATTTCTGTAATTT
** ** ** * * *
68055759 TACAGGTTGAGGGTATTTCGGTAATTTTACAGGTCGATGGTATTTCGATAATTTTCAAAATCATG
1 TACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTC-AAATCAGG
68055824 GGTATATT-TGTAATTT
65 GGTAT-TTCTGTAATTT
* * * * * *
68055840 TATAAATCGAGGGTATTTCGATAATTATCCAAATCAGGGGTATTT
1 TACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTT
68055885 TGCTACTTTT
Statistics
Matches: 225, Mismatches: 54, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
79 2 0.01
80 64 0.28
81 117 0.52
82 42 0.19
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (80 bp):
TACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTCAAATCAGGG
GTATTTCTGTAATTT
Found at i:68055760 original size:53 final size:52
Alignment explanation
Indices: 68055673--68055813 Score: 174
Period size: 53 Copynumber: 2.6 Consensus size: 52
68055663 GGTATTTTTT
* * *
68055673 TAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAGGTCGAGAGTATTTCGA
1 TAATTTTAC-AGTCGAGGGTA-TTTCGTAATTTTACAGGTCGAGAGTATTTCGA
* * *
68055727 TAATTTTACAGTCGAGGGTATTTCAGTAATTTTACAGGTTGAGGGTATTTCGG
1 TAATTTTACAGTCGAGGGTATTTC-GTAATTTTACAGGTCGAGAGTATTTCGA
*
68055780 TAATTTTACAGGTCGATGGTATTTCGATAATTTT
1 TAATTTTACA-GTCGAGGGTATTTCG-TAATTTT
68055814 CAAAATCATG
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
52 3 0.04
53 45 0.58
54 29 0.38
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (52 bp):
TAATTTTACAGTCGAGGGTATTTCGTAATTTTACAGGTCGAGAGTATTTCGA
Found at i:68055929 original size:26 final size:27
Alignment explanation
Indices: 68055891--68055945 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
68055881 ATTTTGCTAC
* *
68055891 TTTTGTAAGCCAATGGTA-TTCAATAA
1 TTTTGTAAACCAAGGGTATTTCAATAA
*
68055917 TTTTGTAAACCAAGGGTATTTCAGTAA
1 TTTTGTAAACCAAGGGTATTTCAATAA
68055944 TT
1 TT
68055946 CTACCCTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (27 bp):
TTTTGTAAACCAAGGGTATTTCAATAA
Found at i:68055964 original size:27 final size:27
Alignment explanation
Indices: 68055934--68056037 Score: 172
Period size: 27 Copynumber: 3.9 Consensus size: 27
68055924 AACCAAGGGT
68055934 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
68055961 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
68055988 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
68056015 ATTTCAGTAATACTAACCTACAG
1 ATTTCAGTAATTCTACCCTACAG
68056038 ATATTAGATT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:68058687 original size:22 final size:22
Alignment explanation
Indices: 68058653--68058716 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
68058643 GCAAATACGT
* *
68058653 TTGGCACACAGCCATAATCAGG
1 TTGGCATAAAGCCATAATCAGG
*
68058675 TTGGCATAGAGCCATATAT-AGG
1 TTGGCATAAAGCCATA-ATCAGG
*
68058697 TTGGCGTAAAGCCATAATCA
1 TTGGCATAAAGCCATAATCA
68058717 AACTAATTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (22 bp):
TTGGCATAAAGCCATAATCAGG
Found at i:68060193 original size:30 final size:30
Alignment explanation
Indices: 68060138--68060297 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
68060128 ATAGTGAATC
68060138 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
68060167 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
68060197 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
68060226 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
68060254 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
68060284 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68060298 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:68060230 original size:59 final size:57
Alignment explanation
Indices: 68060138--68060297 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
68060128 ATAGTGAATC
*
68060138 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
68060197 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
68060254 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
68060298 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:68068068 original size:30 final size:30
Alignment explanation
Indices: 68068013--68068171 Score: 213
Period size: 28 Copynumber: 5.5 Consensus size: 30
68068003 ATAGTGAATC
68068013 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
68068042 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
68068072 CGCACACTTAGTGC-ATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
68068100 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
68068128 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
68068158 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68068172 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 5, Indels: 13
0.87 0.04 0.10
Matches are distributed among these distances:
27 2 0.02
28 46 0.39
29 27 0.23
30 42 0.36
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:68068099 original size:58 final size:57
Alignment explanation
Indices: 68068013--68068171 Score: 214
Period size: 58 Copynumber: 2.8 Consensus size: 57
68068003 ATAGTGAATC
*
68068013 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
68068072 CGCACACTTAGTGC-ATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
68068128 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
68068172 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
55 2 0.02
56 17 0.19
57 2 0.02
58 56 0.62
59 14 0.15
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:68070047 original size:41 final size:41
Alignment explanation
Indices: 68069985--68070105 Score: 179
Period size: 41 Copynumber: 3.0 Consensus size: 41
68069975 AAGGCCACTG
* * *
68069985 GTGGATCCACGGTCGTCAAGCAACCATACGATCGTTAATCA
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCA
* * *
68070026 GTGGATCCACGATCGTTAAGCAACCATGCGATCCTCAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCA
*
68070067 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAAT
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
68070106 TTCTTCCTTC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCA
Found at i:68070396 original size:27 final size:27
Alignment explanation
Indices: 68070370--68070816 Score: 168
Period size: 27 Copynumber: 16.7 Consensus size: 27
68070360 ATCTATAAAC
*
68070370 CAAGGGTATTT-TAGTAATTTTGCAAAC
1 CAAGGGTATTTCT-GTAATTTTGCAAAT
*
68070397 CAATGGTATTTCTGTAATTTTTG-AAAGT
1 CAAGGGTATTTCTGTAA-TTTTGCAAA-T
*
68070425 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTGCAAAT
* * *
68070452 TAGGGGTATTTCTGTAATTTTCCAAAT
1 CAAGGGTATTTCTGTAATTTTGCAAAT
*
68070479 CAAGGGTATTT-TAGTAATTTTTCAAAT
1 CAAGGGTATTTCT-GTAATTTTGCAAAT
* * * *
68070506 TAGGGGTATTTCTATAA-TTTACAAAT
1 CAAGGGTATTTCTGTAATTTTGCAAAT
** * * ** *
68070532 TGATGGTATTTCTGAAATTTTATAAGT
1 CAAGGGTATTTCTGTAATTTTGCAAAT
** ** * *
68070559 TGAGGGTATTTCAATAATTTTACAAGT
1 CAAGGGTATTTCTGTAATTTTGCAAAT
** * **
68070586 TGAGGGTATTTC-GATAATTTTACAGGT
1 CAAGGGTATTTCTG-TAATTTTGCAAAT
** * * **
68070613 TGAGGGTATTTCGGTAATTTTACAGGT
1 CAAGGGTATTTCTGTAATTTTGCAAAT
* * *
68070640 CGAGGGTATTT-TGGTAATTTTACAAGT
1 CAAGGGTATTTCT-GTAATTTTGCAAAT
* * * * *
68070667 CGATGATATTTC-GATCA-TTTCCAAAT
1 CAAGGGTATTTCTG-TAATTTTGCAAAT
* * * *
68070693 C-AGGGTATATCTATAGTTTTACAAAT
1 CAAGGGTATTTCTGTAATTTTGCAAAT
**
68070719 -AGAGGGTATTT-TGGTAATTTCCCAAAT
1 CA-AGGGTATTTCT-GTAATTTTGCAAAT
* * * *
68070746 -AAGGGGCA-TTCGGTAATTTTGTAAAC
1 CAA-GGGTATTTCTGTAATTTTGCAAAT
* * * *
68070772 CAAGGGCA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCTGTAATTTTGCAAAT
*
68070798 CAAGAGTATTT-TAGTAATT
1 CAAGGGTATTTCT-GTAATT
68070817 CTACCCCACA
Statistics
Matches: 340, Mismatches: 58, Indels: 44
0.77 0.13 0.10
Matches are distributed among these distances:
25 8 0.02
26 80 0.24
27 225 0.66
28 27 0.08
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCTGTAATTTTGCAAAT
Found at i:68070442 original size:55 final size:54
Alignment explanation
Indices: 68070370--68070525 Score: 179
Period size: 55 Copynumber: 2.9 Consensus size: 54
68070360 ATCTATAAAC
* **
68070370 CAAGGGTATTTTAGTAATTTTGCAAACCAATGGTATTTCTGTAATTTTTGAAAGT
1 CAAGGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTCTGTAATTTTCCAAA-T
* ** *
68070425 CAAGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTCTGTAATTTTCCAAAT
1 CAAGGGTATTT-TAGTAATTTTGCAAACCAAGGGTATTTCTGTAATTTTCCAAAT
* ** * *
68070479 CAAGGGTATTTTAGTAATTTTTCAAATTAGGGGTATTTCTATAATTT
1 CAAGGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTCTGTAATTT
68070526 ACAAATTGAT
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 43 0.48
55 44 0.49
56 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.44
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTCTGTAATTTTCCAAAT
Found at i:68070506 original size:54 final size:55
Alignment explanation
Indices: 68070370--68070525 Score: 201
Period size: 54 Copynumber: 2.9 Consensus size: 55
68070360 ATCTATAAAC
* ** ** **
68070370 CAAGGGTATTTTAGTAATTTTGCAAACCAATGGTATTTCTGTAATTTTTGAAAGT
1 CAAGGGTATTTTAGTAATTTTTCAAATTAGGGGTATTTCTGTAATTTTCCAAAGT
68070425 CAAGGGTATTTCT-GTAATTTTGT-AAATTAGGGGTATTTCTGTAATTTTCCAAA-T
1 CAAGGGTATTT-TAGTAATTTT-TCAAATTAGGGGTATTTCTGTAATTTTCCAAAGT
*
68070479 CAAGGGTATTTTAGTAATTTTTCAAATTAGGGGTATTTCTATAATTT
1 CAAGGGTATTTTAGTAATTTTTCAAATTAGGGGTATTTCTGTAATTT
68070526 ACAAATTGAT
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
53 2 0.02
54 43 0.48
55 43 0.48
56 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.44
Consensus pattern (55 bp):
CAAGGGTATTTTAGTAATTTTTCAAATTAGGGGTATTTCTGTAATTTTCCAAAGT
Found at i:68070566 original size:53 final size:54
Alignment explanation
Indices: 68070455--68070729 Score: 193
Period size: 54 Copynumber: 5.1 Consensus size: 54
68070445 TGTAAATTAG
** * ** * * *
68070455 GGGTATTTCTGTAATTTTCCAAATCAAGGGTATTT-TAGTAATTTTTCAAATT-A
1 GGGTATTTCAATAATTTTACAAATTGAGGGTATTTCGA-TAATTTTACAAGTTGA
* * *
68070508 GGGGTATTTCTATAA-TTTACAAATTGATGGTATTTCTGA-AATTTTATAAGTTGA
1 -GGGTATTTCAATAATTTTACAAATTGAGGGTATTTC-GATAATTTTACAAGTTGA
* *
68070562 GGGTATTTCAATAATTTTACAAGTTGAGGGTATTTCGATAATTTTACAGGTTGA
1 GGGTATTTCAATAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAGTTGA
** ** * * * *
68070616 GGGTATTTCGGTAATTTTACAGGTCGAGGGTATTTTGGTAATTTTACAAGTCGA
1 GGGTATTTCAATAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAGTTGA
* * * * * * * * * * *
68070670 TGATATTTCGATCA-TTTCCAAA-TCAGGGTATATCTATAGTTTTACAAATAGA
1 GGGTATTTCAATAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAGTTGA
68070722 GGGTATTT
1 GGGTATTT
68070730 TGGTAATTTC
Statistics
Matches: 176, Mismatches: 40, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
52 27 0.15
53 46 0.26
54 102 0.58
55 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTCAATAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAGTTGA
Found at i:68070605 original size:54 final size:54
Alignment explanation
Indices: 68070509--68070666 Score: 194
Period size: 54 Copynumber: 2.9 Consensus size: 54
68070499 TTCAAATTAG
* * * *
68070509 GGGTATTTCTATAA-TTTACAAATTGATGGTATTTCTGA-AATTTTATAAGTTGA
1 GGGTATTTCAATAATTTTACAAGTTGAGGGTATTTC-GATAATTTTACAAGTTGA
*
68070562 GGGTATTTCAATAATTTTACAAGTTGAGGGTATTTCGATAATTTTACAGGTTGA
1 GGGTATTTCAATAATTTTACAAGTTGAGGGTATTTCGATAATTTTACAAGTTGA
** * * * *
68070616 GGGTATTTCGGTAATTTTACAGGTCGAGGGTATTTTGGTAATTTTACAAGT
1 GGGTATTTCAATAATTTTACAAGTTGAGGGTATTTCGATAATTTTACAAGT
68070667 CGATGATATT
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 15 0.16
54 76 0.84
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (54 bp):
GGGTATTTCAATAATTTTACAAGTTGAGGGTATTTCGATAATTTTACAAGTTGA
Found at i:68070649 original size:81 final size:81
Alignment explanation
Indices: 68070427--68070738 Score: 276
Period size: 81 Copynumber: 3.9 Consensus size: 81
68070417 TTGAAAGTCA
** * * *
68070427 AGGGTATTTCTG-TAATTTTGTAAATT-AGGGGTATTTCTGTAATTTTCCAAATCAAGGGTATTT
1 AGGGTATTTC-GATAATTTTACAAATTGA-GGGTATTTCTGTAATTTTACAAGTCGAGGGTATTT
* *
68070490 TAGTAATTTTTCAAATT-
64 TAGTAATTTTACAAGTTG
* * * * * *
68070507 AGGGGTATTTCTATAA-TTTACAAATTGATGGTATTTCTGAAATTTTATAAGTTGAGGGTATTTC
1 A-GGGTATTTCGATAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAGTCGAGGGTATTTT
*
68070571 AATAATTTTACAAGTTG
65 AGTAATTTTACAAGTTG
** * * *
68070588 AGGGTATTTCGATAATTTTACAGGTTGAGGGTATTTCGGTAATTTTACAGGTCGAGGGTATTTTG
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAGTCGAGGGTATTTTA
*
68070653 GTAATTTTACAAGTCG
66 GTAATTTTACAAGTTG
* * * * * * * * * * *
68070669 ATGATATTTCGATCA-TTTCCAAA-TCAGGGTATATCTATAGTTTTACAAATAGAGGGTATTTTG
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAGTCGAGGGTATTTTA
68070732 GTAATTT
66 GTAATTT
68070739 CCCAAATAAG
Statistics
Matches: 186, Mismatches: 41, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
79 39 0.21
80 68 0.37
81 79 0.42
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAGTCGAGGGTATTTTA
GTAATTTTACAAGTTG
Found at i:68070778 original size:26 final size:26
Alignment explanation
Indices: 68070749--68070801 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
68070739 CCCAAATAAG
*
68070749 GGGCATTCGGTAATTTTGTAAACCAA
1 GGGCATTCAGTAATTTTGTAAACCAA
68070775 GGGCATTCAGTAATTTTGTAAACCAA
1 GGGCATTCAGTAATTTTGTAAACCAA
68070801 G
1 G
68070802 AGTATTTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
GGGCATTCAGTAATTTTGTAAACCAA
Found at i:68072495 original size:40 final size:40
Alignment explanation
Indices: 68072451--68072535 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
68072441 GCTACTCGTT
* *
68072451 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATACCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
68072491 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATACCTTCGGGACATAACCCGGATTTAGTAACTCGCA
68072531 CAAAT
1 CAAAT
68072536 TGTGACGTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 38 0.95
41 2 0.05
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATACCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:68074283 original size:124 final size:124
Alignment explanation
Indices: 68074061--68074285 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
68074051 GAATTATGTG
* * * ** * * *
68074061 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
68074126 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
68074185 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
68074250 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
68074286 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:68074407 original size:40 final size:40
Alignment explanation
Indices: 68074280--68074407 Score: 161
Period size: 40 Copynumber: 3.2 Consensus size: 40
68074270 ATGCTGGAAA
* *
68074280 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
68074320 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
68074360 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
68074400 TTATATCC
1 TTATATCC
68074408 AGTTGTATTC
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 70 0.95
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:68082127 original size:124 final size:124
Alignment explanation
Indices: 68081905--68082129 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
68081895 GAATTATGTG
* * * ** * * *
68081905 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
68081970 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
68082029 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
68082094 GCTAAGTCCCGAAGAC-ATTTATGCTAGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTATAT
68082130 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:68082251 original size:40 final size:40
Alignment explanation
Indices: 68082086--68082253 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
68082076 CAATTGAATG
* * ** * ***
68082086 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
* * *
68082126 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGGTT
* **
68082166 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
*
68082206 CTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGGTT
68082246 ATATCCGG
1 ATATCCGG
68082254 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 4 0.04
40 99 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTT
Found at i:68082252 original size:80 final size:80
Alignment explanation
Indices: 68082086--68082253 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 80
68082076 CAATTGAATG
* * * *
68082086 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCA
68082151 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
68082166 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGC-
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
68082230 ATTCGTGC-ACGTGGTT
66 ATT-GTGCTA-GTGGCT
68082246 ATATCCGG
1 ATATCCGG
68082254 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
79 4 0.05
80 70 0.95
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:68083491 original size:40 final size:40
Alignment explanation
Indices: 68083436--68083583 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
68083426 CGGGGTGTTA
68083436 CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCG
1 CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCG
68083476 CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCG
1 CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCG
* * *
68083516 CACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAG
1 CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCG
*
68083557 CACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CACAAATGCCTTC-GGATCTTAGTCCGGA
68083584 CATCATTCGA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
40 91 0.89
41 11 0.11
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCG
Found at i:68087346 original size:49 final size:49
Alignment explanation
Indices: 68087269--68087366 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
68087259 TGCCAAAAAT
*
68087269 TACATTTTTGCCCCTAAACGTTTGACATTTTTACAATTTAGTCCCTAGG
1 TACATTTTTGCCCCTAAACGTTTAACATTTTTACAATTTAGTCCCTAGG
* *
68087318 TACATTTTTGCCCCTAAACTTTTAACATTTTTACAATTTTGTCCCTAGG
1 TACATTTTTGCCCCTAAACGTTTAACATTTTTACAATTTAGTCCCTAGG
68087367 CTCGTAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.43
Consensus pattern (49 bp):
TACATTTTTGCCCCTAAACGTTTAACATTTTTACAATTTAGTCCCTAGG
Found at i:68095722 original size:19 final size:18
Alignment explanation
Indices: 68095685--68095728 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
68095675 ACACATACAG
68095685 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
68095702 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
68095721 TACTAATT
1 TAATAATT
68095729 CAAAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:68095920 original size:8 final size:8
Alignment explanation
Indices: 68095907--68095932 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
68095897 ATCGTGTAAC
68095907 ACTATGCT
1 ACTATGCT
68095915 ACTATGCT
1 ACTATGCT
68095923 ACTATGCT
1 ACTATGCT
68095931 AC
1 AC
68095933 CGCTGTGCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (8 bp):
ACTATGCT
Found at i:68103149 original size:31 final size:32
Alignment explanation
Indices: 68103096--68103155 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
68103086 ACATAGGATT
* *
68103096 TCGATATGTGATGTGTGAGTAAGACCCTGGCA
1 TCGATATATGATGTGCGAGTAAGACCCTGGCA
68103128 TCGATATATG-TGTGCGAGTAAGACCCTG
1 TCGATATATGATGTGCGAGTAAGACCCTG
68103156 TCTGGGACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (32 bp):
TCGATATATGATGTGCGAGTAAGACCCTGGCA
Found at i:68106730 original size:40 final size:38
Alignment explanation
Indices: 68106657--68106779 Score: 156
Period size: 40 Copynumber: 3.1 Consensus size: 38
68106647 CGGGATTTAA
*
68106657 CCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACACTAGCACAA-TGCCTTCGGGTCTTAGC
*
68106696 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
68106736 CCGAATATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGC
68106776 CCGG
1 CCGG
68106780 GTATCATTCA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
39 11 0.15
40 59 0.81
41 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (38 bp):
CCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:68115381 original size:40 final size:40
Alignment explanation
Indices: 68115337--68115446 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
68115327 TTCACAATTT
* *
68115337 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68115377 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68115417 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
68115447 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:68117303 original size:135 final size:135
Alignment explanation
Indices: 68117061--68117338 Score: 556
Period size: 135 Copynumber: 2.1 Consensus size: 135
68117051 ATTTTTATGC
68117061 CTCGGTTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCC
1 CTCGGTTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCC
68117126 CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGGTTGGGTATCGCTCTTTCATA
66 CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGGTTGGGTATCGCTCTTTCATA
68117191 GAGTT
131 GAGTT
68117196 CTCGGTTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCC
1 CTCGGTTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCC
68117261 CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGGTTGGGTATCGCTCTTTCATA
66 CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGGTTGGGTATCGCTCTTTCATA
68117326 GAGTT
131 GAGTT
68117331 CTCGGTTT
1 CTCGGTTT
68117339 CCCAAGTAGC
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
135 143 1.00
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (135 bp):
CTCGGTTTTGTGGTCCCGAAACCACATCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCC
CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGGTTGGGTATCGCTCTTTCATA
GAGTT
Found at i:68124206 original size:93 final size:93
Alignment explanation
Indices: 68124094--68124265 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68124084 CGCCCATAAG
* *
68124094 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68124159 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
68124187 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68124252 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68124266 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68124262 original size:46 final size:46
Alignment explanation
Indices: 68124087--68124262 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68124077 TGTAACCCGC
* * *
68124087 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
68124133 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
68124183 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
68124226 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68124263 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68131746 original size:93 final size:93
Alignment explanation
Indices: 68131634--68131805 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68131624 CGCCCATAAG
* *
68131634 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68131699 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
68131727 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68131792 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68131806 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68131802 original size:46 final size:46
Alignment explanation
Indices: 68131627--68131802 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68131617 TGTAACCCGC
* * *
68131627 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
68131673 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
68131723 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
68131766 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68131803 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68134770 original size:27 final size:27
Alignment explanation
Indices: 68134740--68134793 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68134730 TCATACAACC
* *
68134740 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
68134767 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
68134794 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:68141867 original size:21 final size:22
Alignment explanation
Indices: 68141831--68141878 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
68141821 ATAATTTTCA
*
68141831 TTTTT-TTTCATGTTCAAGTTT
1 TTTTTATTTCATGTTCAAGATT
68141852 TTTTTATTTCAT-TTCAAGATT
1 TTTTTATTTCATGTTCAAGATT
*
68141873 TCTTTA
1 TTTTTA
68141879 CTCCATTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.19, C:0.10, G:0.06, T:0.65
Consensus pattern (22 bp):
TTTTTATTTCATGTTCAAGATT
Found at i:68141885 original size:21 final size:21
Alignment explanation
Indices: 68141843--68141886 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
68141833 TTTTTTCATG
* * * *
68141843 TTCAAGTTTTTTTTATTTCAT
1 TTCAAGATTTCTTTACTCCAT
68141864 TTCAAGATTTCTTTACTCCAT
1 TTCAAGATTTCTTTACTCCAT
68141885 TT
1 TT
68141887 GATTAGTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.05, T:0.59
Consensus pattern (21 bp):
TTCAAGATTTCTTTACTCCAT
Found at i:68149802 original size:48 final size:48
Alignment explanation
Indices: 68149727--68149909 Score: 180
Period size: 48 Copynumber: 3.9 Consensus size: 48
68149717 CACATAGTAG
* *
68149727 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATT
* * *
68149775 GATGCCAATGCCGTGTCTCAGACATGGTCTTACATGGGATCATGCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA--CATATT
* * ** * * *
68149825 GAAGCCAAT---A-G-CCTAGTTATGGTCTTACACGATG-TCTCATATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGATCACATATT
*
68149868 GATGCCAATGCCATGTCCCAGACATGGTCTTGCATGGGATCA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
68149910 TGCATATCTC
Statistics
Matches: 103, Mismatches: 23, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
43 13 0.13
45 17 0.17
46 3 0.03
47 2 0.02
48 55 0.53
50 13 0.13
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATT
Found at i:68151360 original size:9 final size:9
Alignment explanation
Indices: 68151346--68151370 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
68151336 ATCATGTGTG
68151346 AATGGTAAA
1 AATGGTAAA
68151355 AATGGTAAA
1 AATGGTAAA
68151364 AATGGTA
1 AATGGTA
68151371 GAAACATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (9 bp):
AATGGTAAA
Found at i:68157530 original size:48 final size:48
Alignment explanation
Indices: 68157444--68157685 Score: 248
Period size: 48 Copynumber: 5.1 Consensus size: 48
68157434 GAAATCACAT
*
68157444 TCACATATTAGGATGCCAATGCCAT-ATCCCAGATATGGTCTTACATGGGA
1 TCACATATT--GATGCCAATGCCATGA-CCCAGACATGGTCTTACATGGGA
* * *
68157494 TCACATATCGATGCTAATGCCATGACTCAGACATGGTCTTACATGGGA
1 TCACATATTGATGCCAATGCCATGACCCAGACATGGTCTTACATGGGA
* * * *
68157542 TCATGCATATTGAAGCCAAT---A-G-CCTAG-CTATGGTCTTACACGATG-
1 TCA--CATATTGATGCCAATGCCATGACCCAGAC-ATGGTCTTACATG-GGA
* *
68157587 TCTCATATTGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TCACATATTGATGCCAATGCCATGACCCAGACATGGTCTTACATGGGA
* * *
68157635 TCACATTTTGATGCCAATGCCATGTCCCAGGCATGGTCTTACATGGGA
1 TCACATATTGATGCCAATGCCATGACCCAGACATGGTCTTACATGGGA
68157683 TCA
1 TCA
68157686 TGCATATCTC
Statistics
Matches: 161, Mismatches: 19, Indels: 26
0.78 0.09 0.13
Matches are distributed among these distances:
43 14 0.09
44 1 0.01
45 17 0.11
46 3 0.02
47 3 0.02
48 101 0.63
49 2 0.01
50 20 0.12
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (48 bp):
TCACATATTGATGCCAATGCCATGACCCAGACATGGTCTTACATGGGA
Found at i:68159650 original size:19 final size:19
Alignment explanation
Indices: 68159626--68159663 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
68159616 GATGAGCAAA
68159626 TTTTGCTTGATTTTTCCCT
1 TTTTGCTTGATTTTTCCCT
68159645 TTTTGCTTGATTTTTCCCT
1 TTTTGCTTGATTTTTCCCT
68159664 CTTTATTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.21, G:0.11, T:0.63
Consensus pattern (19 bp):
TTTTGCTTGATTTTTCCCT
Found at i:68162241 original size:17 final size:17
Alignment explanation
Indices: 68162219--68162252 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68162209 TCTATTCTTA
68162219 AGGTTCAACCGAAATTT
1 AGGTTCAACCGAAATTT
*
68162236 AGGTTCAACCGGAATTT
1 AGGTTCAACCGAAATTT
68162253 TACACTTGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (17 bp):
AGGTTCAACCGAAATTT
Found at i:68164358 original size:27 final size:26
Alignment explanation
Indices: 68164302--68164358 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
68164292 CAACCTTAAC
* * *
68164302 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
68164328 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
68164355 CCTA
1 CCTA
68164359 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:68166086 original size:40 final size:40
Alignment explanation
Indices: 68166042--68166151 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
68166032 TTCACAATTT
* *
68166042 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68166082 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68166122 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
68166152 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:68168140 original size:17 final size:18
Alignment explanation
Indices: 68168098--68168146 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
68168088 AGTTGAAAAG
68168098 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
68168117 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
68168134 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
68168147 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:68169034 original size:40 final size:40
Alignment explanation
Indices: 68168968--68169134 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
68168958 AAATTGAATG
* * *
68168968 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
68169007 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
68169047 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
68169087 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
68169127 ATATCCGG
1 ATATCCGG
68169135 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:68176134 original size:17 final size:18
Alignment explanation
Indices: 68176092--68176140 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
68176082 AGTTGAAAAG
68176092 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
68176111 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
68176128 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
68176141 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:68177029 original size:40 final size:40
Alignment explanation
Indices: 68176963--68177129 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
68176953 AAATTGAATG
* * *
68176963 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
68177002 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
68177042 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
68177082 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
68177122 ATATCCGG
1 ATATCCGG
68177130 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:68182016 original size:40 final size:40
Alignment explanation
Indices: 68181972--68182081 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
68181962 TTCACAATTT
* *
68181972 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68182012 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68182052 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
68182082 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:68187724 original size:47 final size:47
Alignment explanation
Indices: 68187648--68187960 Score: 464
Period size: 47 Copynumber: 6.5 Consensus size: 47
68187638 TATTAAAATT
68187648 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAA
68187697 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
68187744 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
68187793 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
68187840 TGTGAAGGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * *
68187889 TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
68187936 TGTGGAAGTGTATAAATGTGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
68187961 TCCCGAAGGG
Statistics
Matches: 245, Mismatches: 15, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
47 139 0.57
49 106 0.43
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Done.