Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 223 of 438
Found at i:68825520 original size:6 final size:6
Alignment explanation
Indices: 68825502--68825546 Score: 54
Period size: 6 Copynumber: 7.0 Consensus size: 6
68825492 CTAACCTCTA
*
68825502 TTTTAT ATTTTAT TTTTAT TTTTGT ATTTTAT TTTTAT TTATTAT
1 TTTTAT -TTTTAT TTTTAT TTTTAT -TTTTAT TTTTAT TT-TTAT
68825547 CAATGTTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 19 0.56
7 15 0.44
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:68825520 original size:13 final size:13
Alignment explanation
Indices: 68825500--68825539 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
68825490 CACTAACCTC
68825500 TATTTTATATTTTA
1 TATTTTAT-TTTTA
*
68825514 T-TTTTATTTTTG
1 TATTTTATTTTTA
68825526 TATTTTATTTTTA
1 TATTTTATTTTTA
68825539 T
1 T
68825540 TTATTATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 5 0.22
13 17 0.74
14 1 0.04
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (13 bp):
TATTTTATTTTTA
Found at i:68825529 original size:19 final size:19
Alignment explanation
Indices: 68825502--68825546 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
68825492 CTAACCTCTA
68825502 TTTTATATTTTATTTTTAT
1 TTTTATATTTTATTTTTAT
*
68825521 TTTTGTATTTTATTTTTAT
1 TTTTATATTTTATTTTTAT
68825540 TTATTAT
1 TT-TTAT
68825547 CAATGTTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTATATTTTATTTTTAT
Found at i:68825546 original size:13 final size:12
Alignment explanation
Indices: 68825502--68825546 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 12
68825492 CTAACCTCTA
68825502 TTTTATATTTTAT
1 TTTTAT-TTTTAT
*
68825515 TTTTATTTTTGT
1 TTTTATTTTTAT
68825527 ATTTTATTTTTAT
1 -TTTTATTTTTAT
68825540 TTATTAT
1 TT-TTAT
68825547 CAATGTTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 7 0.25
13 21 0.75
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (12 bp):
TTTTATTTTTAT
Found at i:68825912 original size:7 final size:7
Alignment explanation
Indices: 68825902--68825948 Score: 76
Period size: 7 Copynumber: 6.7 Consensus size: 7
68825892 ATTAACCCTG
68825902 AACCCAT
1 AACCCAT
68825909 AACCCAT
1 AACCCAT
68825916 AACCCAT
1 AACCCAT
68825923 AACCCAT
1 AACCCAT
*
68825930 AACCGAT
1 AACCCAT
*
68825937 AACCCCT
1 AACCCAT
68825944 AACCC
1 AACCC
68825949 TTAAACTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.40, C:0.45, G:0.02, T:0.13
Consensus pattern (7 bp):
AACCCAT
Found at i:68825912 original size:21 final size:20
Alignment explanation
Indices: 68825888--68825948 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 20
68825878 CTAAAATATA
68825888 AACCATTAACCC-TGAACCCAT
1 AACCA-TAACCCAT-AACCCAT
68825909 AACCCATAACCCATAACCCAT
1 AA-CCATAACCCATAACCCAT
*
68825930 AACCGATAACCCCTAACCC
1 AACC-ATAACCCATAACCC
68825949 TTAAACTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 2 0.06
21 30 0.83
22 4 0.11
ACGTcount: A:0.39, C:0.43, G:0.03, T:0.15
Consensus pattern (20 bp):
AACCATAACCCATAACCCAT
Found at i:68825969 original size:22 final size:22
Alignment explanation
Indices: 68825947--68825997 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
68825937 AACCCCTAAC
68825947 CCTTAAACTA-TAA-TACATAAA
1 CCTTAAACTAGTAACT-CATAAA
*
68825968 CCTTAAAATAGTAACTCATAAA
1 CCTTAAACTAGTAACTCATAAA
68825990 CCTTAAAC
1 CCTTAAAC
68825998 CCTTAATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 9 0.35
22 16 0.62
23 1 0.04
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (22 bp):
CCTTAAACTAGTAACTCATAAA
Found at i:68826230 original size:14 final size:15
Alignment explanation
Indices: 68826213--68826248 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
68826203 AGACCCTAAC
68826213 CCCTAAACC-ATAAT
1 CCCTAAACCTATAAT
68826227 CCCTAAACCTATAAT
1 CCCTAAACCTATAAT
*
68826242 CCATAAA
1 CCCTAAA
68826249 ACTTAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (15 bp):
CCCTAAACCTATAAT
Found at i:68826437 original size:15 final size:14
Alignment explanation
Indices: 68826417--68826457 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
68826407 ATGTGATGTT
68826417 TTTTAGGGTTTAGTA
1 TTTTAGGGTTTA-TA
*
68826432 TTTTAGGGGTTATA
1 TTTTAGGGTTTATA
*
68826446 ATTTAGGGTTTA
1 TTTTAGGGTTTA
68826458 AGATTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (14 bp):
TTTTAGGGTTTATA
Found at i:68826483 original size:54 final size:55
Alignment explanation
Indices: 68826418--68826538 Score: 140
Period size: 54 Copynumber: 2.2 Consensus size: 55
68826408 TGTGATGTTT
* *
68826418 TTTAGG-GTTTAGTATTTT-AGGGGTTATAATTTAGGGTTTAAGATTTTTT-AAGG
1 TTTAGGAGTTTAGTATTTTAAGGAG-TATAAATTAGGGTTTAAGATTTTTTGAAGG
* * * **
68826471 TTTAGGAGTTTAGTGTTTTAAGGAGTATAAATTAGTGTTTATGATTTTTTGGGGG
1 TTTAGGAGTTTAGTATTTTAAGGAGTATAAATTAGGGTTTAAGATTTTTTGAAGG
*
68826526 TTTAGGATTTTAG
1 TTTAGGAGTTTAG
68826539 GGGTTATATG
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
53 6 0.11
54 33 0.58
55 18 0.32
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (55 bp):
TTTAGGAGTTTAGTATTTTAAGGAGTATAAATTAGGGTTTAAGATTTTTTGAAGG
Found at i:68826688 original size:40 final size:40
Alignment explanation
Indices: 68826550--68826728 Score: 243
Period size: 41 Copynumber: 4.4 Consensus size: 40
68826540 GGTTATATGA
*
68826550 CTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTG
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
*
68826590 CCTTTTAGAGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
1 -CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-G
68826632 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAG
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-G
* * *
68826673 -TTTTAGCGGCGTTTTAACAAAAAACGCCGCTATTGCTCTG
1 CTTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCTG
* **
68826713 TTTTTAATGGCGTTTT
1 CTTTTAGCGGCGTTTT
68826729 TGGTAAAACG
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
40 16 0.13
41 109 0.87
42 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (40 bp):
CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
Found at i:68828401 original size:29 final size:29
Alignment explanation
Indices: 68828342--68828401 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
68828332 AGTGATTTGT
* * *
68828342 TAAAATTGAATCAAATCAAAATTTCATTA
1 TAAAATTGAACCAAATCAAAAGTTAATTA
68828371 TAAAATTGAACCAAATC-AAAGTTAATGTA
1 TAAAATTGAACCAAATCAAAAGTTAAT-TA
68828400 TA
1 TA
68828402 GTTTTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.32
Consensus pattern (29 bp):
TAAAATTGAACCAAATCAAAAGTTAATTA
Found at i:68835929 original size:79 final size:79
Alignment explanation
Indices: 68835787--68835943 Score: 217
Period size: 79 Copynumber: 2.0 Consensus size: 79
68835777 GATGTGTATG
*** *
68835787 ATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCT
1 ATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCT
68835852 AAG-CCCGAAGGCA
66 AAGTCCCGAAGGCA
* * * *
68835865 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGC
1 ATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGC
*
68835930 TATGTCCCGAAGGC
65 TAAGTCCCGAAGGC
68835944 GTTTGAACGA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
78 27 0.40
79 32 0.47
80 9 0.13
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (79 bp):
ATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCT
AAGTCCCGAAGGCA
Found at i:68835943 original size:40 final size:39
Alignment explanation
Indices: 68835787--68835912 Score: 216
Period size: 39 Copynumber: 3.2 Consensus size: 39
68835777 GATGTGTATG
*
68835787 ATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
68835826 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
1 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
*
68835865 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 ATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
*
68835905 TTTGTGCG
1 ATTGTGCG
68835913 GGTTACCATA
Statistics
Matches: 83, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
39 66 0.80
40 17 0.20
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (39 bp):
ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:68835970 original size:79 final size:78
Alignment explanation
Indices: 68835799--68835981 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 78
68835789 TGTGCGAATT
* *** *
68835799 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
** *
68835864 AATTGTGCGAGTT
66 AATTGAACGAGTA
* * *
68835877 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAG-CCCGAAG
**
68835942 GCGTTTGAACGAGTA
64 GCAATTGAACGAGTA
*
68835957 GCT-ATATCC-GGTTAAACTCCGAAGG
1 G-TGATATCCGGGTTAAGC-CCGAAGG
68835982 TATGTGATTT
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
78 17 0.20
79 45 0.52
80 24 0.28
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
AATTGAACGAGTA
Found at i:68838420 original size:21 final size:21
Alignment explanation
Indices: 68838394--68838482 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 21
68838384 AAAGTAGAGT
68838394 AAAAATAAATATAATATTATA
1 AAAAATAAATATAATATTATA
* *
68838415 AAAAATAAATATTAACAATA-A
1 AAAAATAAATA-TAATATTATA
* *
68838436 AATAAATTAATTTAACTA-TATA
1 AA-AAATAAATATAA-TATTATA
* *
68838458 TAAAATAAAGGATAA-ATTATA
1 AAAAATAAA-TATAATATTATA
68838479 AAAA
1 AAAA
68838483 TAGTCACTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
20 1 0.02
21 32 0.62
22 19 0.37
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
AAAAATAAATATAATATTATA
Found at i:68841024 original size:17 final size:17
Alignment explanation
Indices: 68841002--68841034 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68840992 AAAATTTATT
*
68841002 AAATAAAAATTATAAAA
1 AAATAAAAAATATAAAA
68841019 AAATAAAAAATATAAA
1 AAATAAAAAATATAAA
68841035 TTATTCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATAAAAAATATAAAA
Found at i:68841118 original size:21 final size:22
Alignment explanation
Indices: 68841068--68841118 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
68841058 TTTTAAATTT
68841068 ATATTTAAAATTTAGAAAATAA
1 ATATTTAAAATTTAGAAAATAA
68841090 AT-TATTAAAATTATA-AAAA-AA
1 ATAT-TTAAAATT-TAGAAAATAA
68841111 ATATTTAA
1 ATATTTAA
68841119 TTTGTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
21 9 0.35
22 15 0.58
23 2 0.08
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
ATATTTAAAATTTAGAAAATAA
Found at i:68841946 original size:25 final size:26
Alignment explanation
Indices: 68841902--68841954 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
68841892 AAAGCATAAA
* *
68841902 CATAAACTGAAAAACAATCACGTGTC
1 CATAAACCGAAAAACAATCACGCGTC
68841928 CATAAACCG-AAAACAATCACGCGTC
1 CATAAACCGAAAAACAATCACGCGTC
68841953 CA
1 CA
68841955 AAGCCCCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.45, C:0.28, G:0.11, T:0.15
Consensus pattern (26 bp):
CATAAACCGAAAAACAATCACGCGTC
Found at i:68845331 original size:33 final size:32
Alignment explanation
Indices: 68845240--68845332 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 32
68845230 CAATGTTTAT
* *
68845240 ATGTAAGACCATAGCTGGGCTATGACATTCTG
1 ATGTAAGACCATAGCTGGGCTATGGCATACTG
* *
68845272 ATGATAAGACCATAACTGGGTTATGGCACTAC-G
1 ATG-TAAGACCATAGCTGGGCTATGGCA-TACTG
* *
68845305 AATGTAAGACCATGGCTGGGCCATGGCA
1 -ATGTAAGACCATAGCTGGGCTATGGCA
68845333 ATGCATTTGT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
32 3 0.06
33 42 0.84
34 5 0.10
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (32 bp):
ATGTAAGACCATAGCTGGGCTATGGCATACTG
Found at i:68851109 original size:27 final size:27
Alignment explanation
Indices: 68851044--68851221 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
68851034 TTTGGTTTAC
68851044 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
68851070 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
68851097 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
68851124 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
68851151 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
68851178 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
68851205 GAAATTA-CGAAATACCC
1 AAAATTACCAAAATACCC
68851222 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
26 23 0.17
27 114 0.83
28 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:68851274 original size:27 final size:27
Alignment explanation
Indices: 68851044--68851320 Score: 251
Period size: 27 Copynumber: 10.3 Consensus size: 27
68851034 TTTGGTTTAC
*
68851044 AAAATTACCAAAATACCCT-GCTTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * * *
68851070 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
*
68851097 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*
68851124 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
* *
68851151 AAAATTATCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*
68851178 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
* * **
68851205 GAAATTA-CGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTGT
*** *
68851231 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* *
68851258 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
* ****
68851285 AGAATTACCGTTTTACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
68851312 AAAATTACC
1 AAAATTACC
68851321 GTTTTACCCT
Statistics
Matches: 214, Mismatches: 32, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
26 37 0.17
27 176 0.82
28 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:68851777 original size:27 final size:27
Alignment explanation
Indices: 68851271--68851776 Score: 646
Period size: 27 Copynumber: 18.8 Consensus size: 27
68851261 ATTACCAAAG
*
68851271 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
68851298 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
68851325 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
68851352 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
68851379 TACCCTC-AGTTTACAGAATTATTGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
* *
68851406 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
68851433 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
68851460 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
68851487 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
68851514 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
68851541 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
68851568 TACCCT-AATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68851594 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
68851621 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
68851648 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68851675 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68851702 TACCCTTGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
68851728 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
68851755 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
68851777 TAAAATACCC
Statistics
Matches: 425, Mismatches: 44, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
26 50 0.12
27 371 0.87
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:68851801 original size:54 final size:53
Alignment explanation
Indices: 68851271--68851840 Score: 252
Period size: 54 Copynumber: 10.6 Consensus size: 53
68851261 ATTACCAAAG
* * **** * *
68851271 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTAT-AAATTACCGTTT
* * *** * *
68851325 TACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACCGTTT
* ****** * *
68851379 TACCCTC-AGTTTACAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGA-TTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACCGTTT
* * **** * *
68851433 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTAT-AAATTACCGTTT
* **** * * **
68851487 TACCCTCGATTTACAGAATTACCGTTTTACCC-TCAGTTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGA-TTTATA-AATTACCGTTT
* * **** * * *
68851541 TACCCTCGATTTATAGAATTACCGTTTTACCC-TAATTTACATAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACCGTTT
* * **** *
68851594 TACCC-CAGATTTACATAATTATCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACCGTTT
* *** * *
68851648 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACCGTTT
* ***** * *
68851702 TACCCTTGATTTAC-AAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTA-TAAATTACCGTTT
* * * **
68851755 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTGAAATTACCGTAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTAT-AAATTACCGTTT
* ** *
68851809 TACCCTCAATTTGTAAAACTACCAAAATACCC
1 TACCCTCGATTTACAAAATTACCAAAATACCC
68851841 CTGTATGGTA
Statistics
Matches: 443, Mismatches: 61, Indels: 24
0.84 0.12 0.05
Matches are distributed among these distances:
52 1 0.00
53 92 0.21
54 347 0.78
55 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAATTACCGTTT
Found at i:68853042 original size:25 final size:25
Alignment explanation
Indices: 68853013--68853060 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68853003 CCTTATAATG
* * *
68853013 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68853038 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68853061 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68853163 original size:20 final size:20
Alignment explanation
Indices: 68853103--68853163 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
68853093 ATAAATATGG
*
68853103 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
68853123 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
68853143 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
68853163 T
1 T
68853164 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:68853240 original size:24 final size:24
Alignment explanation
Indices: 68853213--68853356 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
68853203 GAGGAAGTGA
*
68853213 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
68853237 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
68853261 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68853285 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
68853309 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
68853333 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68853357 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
24 101 0.90
25 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68853584 original size:31 final size:31
Alignment explanation
Indices: 68853549--68853612 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
68853539 CGTTTACAGT
*
68853549 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
68853580 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68853611 AA
1 AA
68853613 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:68856323 original size:27 final size:27
Alignment explanation
Indices: 68856258--68856436 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
68856248 TTTGGTTTAC
68856258 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * *
68856284 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
68856311 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
68856338 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
68856365 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
68856392 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
68856419 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
68856437 TCGACCTGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 14 0.10
27 123 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:68856379 original size:81 final size:80
Alignment explanation
Indices: 68856258--68856490 Score: 272
Period size: 81 Copynumber: 2.9 Consensus size: 80
68856248 TTTGGTTTAC
* *
68856258 AAAATTACCAAAATACCCTGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAAATACCCTTGGTTTGTAAAATTACCAA
*
68856322 AATACCCCTAGTTTGT
65 AATACCCCTAATTTGT
* *
68856338 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATA-CCCTGA-TTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCA
68856402 AAATACCCCTAATTTGT
64 AAATACCCCTAATTTGT
* ** ** ** * **
68856419 GAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
*
68856484 AGTACCC
65 AATACCC
68856491 TCGATTTATA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 19 0.15
81 109 0.84
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:68856450 original size:27 final size:27
Alignment explanation
Indices: 68856420--68856494 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
68856410 CTAATTTGTG
68856420 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
68856447 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
68856474 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
68856495 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:68856994 original size:27 final size:27
Alignment explanation
Indices: 68856486--68856993 Score: 630
Period size: 27 Copynumber: 18.8 Consensus size: 27
68856476 ATTACCAAAG
*
68856486 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
68856513 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
68856540 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
68856567 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
68856594 TACCCTC-AGTTTACAGAATTATTGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
* *
68856621 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
68856648 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
68856675 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
68856702 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
68856729 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
68856756 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
68856783 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
68856810 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
68856837 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68856864 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68856891 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
68856918 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
68856945 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
68856972 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
68856994 TAAAATACCC
Statistics
Matches: 425, Mismatches: 48, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.01
27 417 0.98
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:68857018 original size:54 final size:53
Alignment explanation
Indices: 68856513--68857057 Score: 239
Period size: 54 Copynumber: 10.1 Consensus size: 53
68856503 ATTACCGTTT
* * * * * ***
68856513 TACCCTCGATTTGTAAAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
1 TACCCTTGATTTAT-AAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
* * * * ******
68856567 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTATTGTTT
1 TACCCTTGATTTATA-AATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
* * * * * ****
68856621 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTTGATTTATA-AATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
* * * * ****
68856675 TACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTTGATTTAT-AAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
* * ** * * * ****
68856729 TACCC-TCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTTGA-TTTATA-AATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
* * * * * * ****
68856783 TACCCCTAATTTACATAATTACCATTTTACCC-CAGATTTACATAATTATCGTTT
1 TACCCTTGATTTATA-AATTACCGTTTTACCCTCA-ATTTACAAAATTACCAAAA
* * ***
68856837 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTT
1 TACCCTTGATTTATA-AATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
* * ** *****
68856891 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTTGATTTATA-AATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
* * * *
68856945 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTA-TAAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
* * ** ** *
68856999 TACCCTTGGTTTGTGAAATTACCGTAATACCCTCAATTTGTAAAACTACCAAAA
1 TACCCTTGATTTAT-AAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
68857053 TACCC
1 TACCC
68857058 CTGTATGGTA
Statistics
Matches: 419, Mismatches: 63, Indels: 18
0.84 0.13 0.04
Matches are distributed among these distances:
53 4 0.01
54 409 0.98
55 6 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (53 bp):
TACCCTTGATTTATAAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAA
Found at i:68858261 original size:25 final size:25
Alignment explanation
Indices: 68858233--68858280 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68858223 TTATACCATG
* * *
68858233 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68858258 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68858281 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68858383 original size:20 final size:20
Alignment explanation
Indices: 68858323--68858383 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
68858313 ATAAATATGG
*
68858323 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
68858343 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
68858363 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
68858383 T
1 T
68858384 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:68858460 original size:24 final size:24
Alignment explanation
Indices: 68858433--68858575 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
68858423 GAGGAAGTGA
68858433 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
68858457 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
68858481 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
68858504 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
68858528 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
68858552 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68858576 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:68858526 original size:47 final size:47
Alignment explanation
Indices: 68858433--68858575 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
68858423 GAGGAAGTGA
68858433 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
68858481 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
68858528 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
68858576 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:68858549 original size:71 final size:72
Alignment explanation
Indices: 68858433--68858576 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
68858423 GAGGAAGTGA
*
68858433 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
68858496 CCAGTTAT
65 CCAGTTAT
** * *
68858504 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
68858569 CAGTTAT
66 CAGTTAT
68858576 A
1 A
68858577 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:68858802 original size:31 final size:31
Alignment explanation
Indices: 68858767--68858830 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
68858757 CGTTTACAGT
*
68858767 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
68858798 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68858829 AA
1 AA
68858831 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:68861862 original size:51 final size:49
Alignment explanation
Indices: 68861758--68861917 Score: 123
Period size: 51 Copynumber: 3.2 Consensus size: 49
68861748 AACCATGCAA
* *
68861758 ATGTATTTGGATAGGAAAATGTCTCATTTCATTGAAACTATCCATGCTG
1 ATGTATTTGGATAGGAAAATGTCTCATTGCATTGAAACTATCCATGCTC
* *
68861807 ATGTATTTGGTTGAGGAAAAATGTCTTCA-TGCATTTGAAA-TCGTCCATG-TC
1 ATGTATTTGGAT-AGG-AAAATGTC-TCATTGCA-TTGAAACT-ATCCATGCTC
** * * *
68861858 ATGTATTTAAAT-GAGATAAACGTCTC-TATGCATTGAAAACCATCCATGATC
1 ATGTATTTGGATAG-GA-AAATGTCTCAT-TGCATTG-AAACTATCCATGCTC
68861909 ATGTATTTG
1 ATGTATTTG
68861918 AATTACAAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
49 18 0.20
50 23 0.26
51 32 0.36
52 15 0.17
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.36
Consensus pattern (49 bp):
ATGTATTTGGATAGGAAAATGTCTCATTGCATTGAAACTATCCATGCTC
Found at i:68861904 original size:50 final size:50
Alignment explanation
Indices: 68861850--68861945 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
68861840 TTTGAAATCG
*
68861850 TCCATG-TCATGTATTTAAATGAGATAAACGTCTCTATGCATTGAAAACCA
1 TCCATGATCATGTATTTAAATGACA-AAACGTCTCTATGCATTGAAAACCA
* * * *
68861900 TCCATGATCATGTATTTGAATTACAAAACGTCTTTGTGCATTGAAA
1 TCCATGATCATGTATTTAAATGACAAAACGTCTCTATGCATTGAAA
68861946 TTGTCCATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 25 0.62
51 15 0.38
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (50 bp):
TCCATGATCATGTATTTAAATGACAAAACGTCTCTATGCATTGAAAACCA
Found at i:68861997 original size:19 final size:19
Alignment explanation
Indices: 68861957--68862024 Score: 82
Period size: 19 Copynumber: 3.5 Consensus size: 19
68861947 TGTCCATGTC
68861957 CCATGCTTGAAATCGTCCAT
1 CCATGCTTGAAA-CGTCCAT
*
68861977 CCATGCTTGAAACGTCTAT
1 CCATGCTTGAAACGTCCAT
* * *
68861996 CCTTGCTTGAAACATTCAT
1 CCATGCTTGAAACGTCCAT
*
68862015 CTATGCTTGA
1 CCATGCTTGA
68862025 TGTTTGAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 29 0.71
20 12 0.29
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (19 bp):
CCATGCTTGAAACGTCCAT
Found at i:68862816 original size:2 final size:2
Alignment explanation
Indices: 68862809--68862839 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
68862799 ATCATAACTT
68862809 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68862840 CATAACACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68863353 original size:88 final size:88
Alignment explanation
Indices: 68863203--68863382 Score: 324
Period size: 88 Copynumber: 2.0 Consensus size: 88
68863193 AATTATAAGC
* *
68863203 AATTACACCCAAATCGAATTATTAGGTGGCTTTCAAAACACTAACTTAATGGATTTAAAAACAAA
1 AATTACACCCAAATCAAATTATTAGGTGGCTTTCAAAACACTAACTTAATAGATTTAAAAACAAA
68863268 TTCCTTATAACTGCACCATTAAT
66 TTCCTTATAACTGCACCATTAAT
* *
68863291 AATTACACCCAAATCAAATTATTAGGTGGCTTTCAAAACACTACCTTAATAGATTTATAAACAAA
1 AATTACACCCAAATCAAATTATTAGGTGGCTTTCAAAACACTAACTTAATAGATTTAAAAACAAA
68863356 TTCCTTATAACTGCACCATTAAT
66 TTCCTTATAACTGCACCATTAAT
68863379 AATT
1 AATT
68863383 CTTAAGTAAA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (88 bp):
AATTACACCCAAATCAAATTATTAGGTGGCTTTCAAAACACTAACTTAATAGATTTAAAAACAAA
TTCCTTATAACTGCACCATTAAT
Found at i:68865718 original size:19 final size:19
Alignment explanation
Indices: 68865694--68865749 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
68865684 ATATACACAT
68865694 TTGTCATTTACTAATCAAG
1 TTGTCATTTACTAATCAAG
*
68865713 TTGTC----ACCAAT-AA-
1 TTGTCATTTACTAATCAAG
68865726 -TGTCATTTACTAATCAAG
1 TTGTCATTTACTAATCAAG
68865744 TTGTCA
1 TTGTCA
68865750 CCAATAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 14
0.64 0.05 0.32
Matches are distributed among these distances:
12 4 0.14
14 2 0.07
15 5 0.18
16 5 0.18
17 2 0.07
19 10 0.36
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (19 bp):
TTGTCATTTACTAATCAAG
Found at i:68865730 original size:31 final size:31
Alignment explanation
Indices: 68865695--68865759 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
68865685 TATACACATT
68865695 TGTCATTTACTAATCAAGTTGTCACCAATAA
1 TGTCATTTACTAATCAAGTTGTCACCAATAA
68865726 TGTCATTTACTAATCAAGTTGTCACCAATAA
1 TGTCATTTACTAATCAAGTTGTCACCAATAA
68865757 TGT
1 TGT
68865760 AACTTTCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (31 bp):
TGTCATTTACTAATCAAGTTGTCACCAATAA
Found at i:68870034 original size:9 final size:9
Alignment explanation
Indices: 68870016--68870052 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
68870006 TATTGTTTGA
*
68870016 TATTCAAAT
1 TATTCGAAT
68870025 TATTCGAAT
1 TATTCGAAT
*
68870034 TATTCGAGT
1 TATTCGAAT
68870043 TATTCGAAT
1 TATTCGAAT
68870052 T
1 T
68870053 CAAAAACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:68870247 original size:14 final size:14
Alignment explanation
Indices: 68870230--68870297 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
68870220 AAACAACAGT
68870230 AAAAATAATAGCAA
1 AAAAATAATAGCAA
*
68870244 AAAAAAAATAGCAA
1 AAAAATAATAGCAA
* * *
68870258 TAAAAACAACACCAA
1 -AAAAATAATAGCAA
*
68870273 AACATCAAGAATAGCAA
1 AA-A--AATAATAGCAA
68870290 AAAAATAA
1 AAAAATAA
68870298 CAAGATAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
14 19 0.45
15 12 0.29
16 1 0.02
17 10 0.24
ACGTcount: A:0.71, C:0.13, G:0.06, T:0.10
Consensus pattern (14 bp):
AAAAATAATAGCAA
Found at i:68871520 original size:23 final size:23
Alignment explanation
Indices: 68871467--68871523 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
68871457 ATAAGATCTG
*
68871467 TTTATGCATGTTATATTCAATGC
1 TTTATGCGTGTTATATTCAATGC
* * * *
68871490 TTTGTGCGTGTTATATTTAGTGT
1 TTTATGCGTGTTATATTCAATGC
68871513 TTTATGCGTGT
1 TTTATGCGTGT
68871524 GATACTTGTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (23 bp):
TTTATGCGTGTTATATTCAATGC
Found at i:68875983 original size:47 final size:46
Alignment explanation
Indices: 68875870--68876091 Score: 177
Period size: 46 Copynumber: 4.7 Consensus size: 46
68875860 GGGTTATTGT
* *
68875870 GAGCTAGTGTAAGACATGTCT-GGCACATACATCGGCCA-C-ATTATGA
1 GAGCTAGTGTAAGACATGTCTAGG-ACATGCATCGG-CATCGA-GATGA
* *
68875916 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGGGATGA
1 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATCGAGATGA
* * * *
68875964 GTGCTAGTGTAAGACATGTCTAGGATATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGATG-A
* * * *
68876011 -AGCAAGAGTAAGACATGTCTAGGACATGGCATCGAC-TTGAGAT-A
1 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCATCGAGATGA
* * *
68876055 TGAGCCAGAGTAAGACCATGTCTGGGACATGGCATCG
1 -GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCG
68876092 ACACCTTACC
Statistics
Matches: 147, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
44 1 0.01
46 67 0.46
47 54 0.37
48 25 0.17
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGATGA
Found at i:68877716 original size:40 final size:40
Alignment explanation
Indices: 68877671--68877800 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
68877661 CGGAATACAA
68877671 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
68877711 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
68877751 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
68877791 CCGGATATAA
1 CCGGATATAA
68877801 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:68877815 original size:40 final size:40
Alignment explanation
Indices: 68877671--68877834 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
68877661 CGGAATACAA
* **
68877671 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
68877711 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
68877751 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
68877791 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
68877831 CCGG
1 CCGG
68877835 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:68880843 original size:39 final size:39
Alignment explanation
Indices: 68880800--68880878 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
68880790 GTATGTTCAA
68880800 TAAGGGAGTGGTGCCATTTTCGAACTAAAAATAAAACAT
1 TAAGGGAGTGGTGCCATTTTCGAACTAAAAATAAAACAT
68880839 TAAGGGAGTGGTGCCATTTTCGAACTAAAAATAAAACAT
1 TAAGGGAGTGGTGCCATTTTCGAACTAAAAATAAAACAT
68880878 T
1 T
68880879 CATGTATTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.27
Consensus pattern (39 bp):
TAAGGGAGTGGTGCCATTTTCGAACTAAAAATAAAACAT
Found at i:68887782 original size:30 final size:30
Alignment explanation
Indices: 68887748--68887807 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
68887738 ACTTAACAAG
*
68887748 AAAATGCCTTTAGAATAATAACAAAATTAA
1 AAAATGCCTTTAAAATAATAACAAAATTAA
68887778 AAAATGCCTTTAAAATAATAACAAAATTAA
1 AAAATGCCTTTAAAATAATAACAAAATTAA
68887808 CAATAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.58, C:0.10, G:0.05, T:0.27
Consensus pattern (30 bp):
AAAATGCCTTTAAAATAATAACAAAATTAA
Found at i:68890761 original size:29 final size:30
Alignment explanation
Indices: 68890718--68890779 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
68890708 AAACTAGAAC
* *
68890718 TTTTTTCT-TTTTTTTATTATTTTGTTGCTA
1 TTTTTTCTGTTTTTTTACTA-TTTGTTACTA
68890748 TTTTTT-TGTTTTTTTACTATTTGTTACTA
1 TTTTTTCTGTTTTTTTACTATTTGTTACTA
68890777 TTT
1 TTT
68890780 CACAATTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 13 0.45
30 16 0.55
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.76
Consensus pattern (30 bp):
TTTTTTCTGTTTTTTTACTATTTGTTACTA
Found at i:68890852 original size:17 final size:19
Alignment explanation
Indices: 68890819--68890856 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
68890809 ATTATTTGGA
68890819 TATTGTATAACTCTTGTTT
1 TATTGTATAACTCTTGTTT
68890838 TATTGT-TAA-TCTTGTTT
1 TATTGTATAACTCTTGTTT
68890855 TA
1 TA
68890857 GAGGTATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.53
18 3 0.16
19 6 0.32
ACGTcount: A:0.21, C:0.08, G:0.11, T:0.61
Consensus pattern (19 bp):
TATTGTATAACTCTTGTTT
Found at i:68892924 original size:40 final size:40
Alignment explanation
Indices: 68892867--68893091 Score: 160
Period size: 40 Copynumber: 5.7 Consensus size: 40
68892857 TCGAATGATG
* * *
68892867 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGTTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTG-CAAGTGACTAAA
* *
68892907 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
* * * *
68892947 TTCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
* * * *
68892986 TCCCGGGCTAAG--CCTGAAGGCATTGGTGCGAGTTACTAAA
1 T-CCGGACTAAGATCC-GAAGGCATTTGTGCAAGTGACTAAA
** **
68893026 TCCGGGTTAAG-TCCCGAAGGCATTTGTGTGAGTGACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTGACTA-AA
* *
68893067 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
68893092 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 115 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:68893113 original size:79 final size:79
Alignment explanation
Indices: 68892874--68893124 Score: 244
Period size: 79 Copynumber: 3.2 Consensus size: 79
68892864 ATGTCCGGGC
* * *
68892874 TAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTG-TGAGTGACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
68892937 AGTTACTAAATTCGGAC
64 AGTTACTAAATCCGG-T
* * * * * *
68892954 TAAGAT-CCAAAGGCATTTGTGCGAGTTACTA-ATCCCGGGCTAAG-CCTGAAGGCATTGGTGCG
1 TAAG-TCCCGAAGGCATTTGTGTGAGTGACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCG
68893016 AGTTACTAAATCCGGGT
64 AGTTACTAAATCC-GGT
* **
68893033 TAAGTCCCGAAGGCATTTGTGTGAGTGACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGTGAGTGACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
68893098 -TAGCTATATCCGGT
66 TTA-CTAAATCCGGT
* *
68893112 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
68893125 TACGTGATTC
Statistics
Matches: 140, Mismatches: 22, Indels: 19
0.77 0.12 0.10
Matches are distributed among these distances:
78 1 0.01
79 79 0.56
80 53 0.38
81 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGTGAGTGACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGT
Found at i:68901055 original size:40 final size:39
Alignment explanation
Indices: 68900998--68901217 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
68900988 TCGAATGATG
* * *
68900998 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
68901038 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
68901078 T-CGGACTAAGATCC-AAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
68901115 TCCGGGCTAAG-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
68901152 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
68901193 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
68901218 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 8, Indels: 18
0.86 0.04 0.10
Matches are distributed among these distances:
36 16 0.10
37 21 0.13
38 29 0.18
39 22 0.13
40 65 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68901248 original size:79 final size:76
Alignment explanation
Indices: 68900998--68901250 Score: 232
Period size: 79 Copynumber: 3.3 Consensus size: 76
68900988 TCGAATGATG
* * * * * *
68900998 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGTTACTA-AACCGGGCTAAG--CCGAAGGCA-T
68901062 TGTGCGAGTTACTAAA
61 TGTGCGAGTTACTAAA
** *
68901078 T-CGGACTAAGAT-CC-AAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGCCGAAGGCATTGTG
1 TCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGCCGAAGGCATTGTG
68901140 CGAGTTACTAAA
65 CGAGTTACTAAA
* *
68901152 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT-
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAG--CCGAAGGCATTG
*
68901216 TGAACGAG-TAGCTATA
63 TG--CGAGTTA-CTAAA
*
68901232 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
68901251 TACGTGATTC
Statistics
Matches: 149, Mismatches: 13, Indels: 23
0.81 0.07 0.12
Matches are distributed among these distances:
74 19 0.13
75 17 0.11
76 22 0.15
77 21 0.14
78 14 0.09
79 43 0.29
80 13 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (76 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGCCGAAGGCATTGTGC
GAGTTACTAAA
Found at i:68907513 original size:40 final size:40
Alignment explanation
Indices: 68907458--68907625 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
68907448 TGAATGATAC
* *
68907458 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
68907498 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
68907538 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
68907578 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
68907618 CC-GGCTAA
1 CCGGGCTAA
68907626 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:68915440 original size:40 final size:40
Alignment explanation
Indices: 68915383--68915546 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 40
68915373 TGAATGATAC
* *
68915383 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
68915423 CCGGGCTAAGACTCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
68915463 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
68915503 CCGGGTTAAGACCCGAAGGCAATTGCGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
68915543 CCGG
1 CCGG
68915547 TTAAATTCCG
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:68915540 original size:80 final size:80
Alignment explanation
Indices: 68915383--68915546 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
68915373 TGAATGATAC
* * ** * *
68915383 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACTCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
* *
68915448 TGCGAGTTGTTATAT
66 CGCGAGTGGTTATAT
* * *
68915463 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
**
68915527 GCGCTTGTGGTTATAT
65 GCGCGAGTGGTTATAT
68915543 CCGG
1 CCGG
68915547 TTAAATTCCG
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 67 0.96
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
CGCGAGTGGTTATAT
Found at i:68919212 original size:49 final size:50
Alignment explanation
Indices: 68919143--68919388 Score: 291
Period size: 49 Copynumber: 4.9 Consensus size: 50
68919133 ATCTATTGTG
* * * *
68919143 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
*
68919193 -GGT-AGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTT
1 AGGTCA-CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * * **
68919243 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
68919293 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
68919343 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
68919389 GCTTTGGCTA
Statistics
Matches: 168, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.01
49 82 0.49
50 47 0.28
51 37 0.22
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:68919332 original size:101 final size:98
Alignment explanation
Indices: 68919146--68919375 Score: 291
Period size: 100 Copynumber: 2.3 Consensus size: 98
68919136 TATTGTGAGG
* * * * *
68919146 TCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATTATTGGTAGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATGATTGGTAGCATGTGTAGTACT
* *
68919211 AAGTGCAGGCTACTATGTGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGTGTACCAGATAA-TT-GA
* * *
68919246 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTATCAGATGGTTAGGTCA-CGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATGATT-GGT-AGCATGTGTAGTA
* *
68919310 CTAAGTGTAGGCTACTACGTGTACCAGATAATTGG
64 CTAAGTGCAGGCTACTACGTGTACCAGATAATTGA
* *
68919345 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
68919376 TGCGTACCAG
Statistics
Matches: 114, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
99 30 0.26
100 42 0.37
101 41 0.36
102 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATGATTGGTAGCATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATAATTGA
Found at i:68926721 original size:49 final size:50
Alignment explanation
Indices: 68926644--68926889 Score: 273
Period size: 49 Copynumber: 4.9 Consensus size: 50
68926634 ATCTATTGTG
* * *
68926644 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATTATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
68926694 -GGTCGCATGTGTAGTACAAAGTGCAGGCTACTATGCGTACCCA-ATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TT
* * * ** **
68926744 CGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
68926794 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
68926844 -GGTCGCGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
68926890 GCTTTGGCTA
Statistics
Matches: 160, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
49 77 0.48
50 49 0.31
51 34 0.21
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:68929991 original size:47 final size:47
Alignment explanation
Indices: 68929922--68930128 Score: 360
Period size: 47 Copynumber: 4.4 Consensus size: 47
68929912 AACTGCTTGT
*
68929922 AGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68929969 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
68930016 AGTGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
68930063 AGTGCATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68930110 AGTGTATATATGTGATAAG
1 AGTGTATATATGTGATAAG
68930129 TCCCGAAGGG
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 154 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:68930308 original size:37 final size:37
Alignment explanation
Indices: 68930246--68930328 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
68930236 CCGAGCTCTA
* *
68930246 AAGACCCGATGACTACGTGTAGAGATTATGTCCGGCT
1 AAGACCCGATGACCACGGGTAGAGATTATGTCCGGCT
* * *
68930283 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTAGAGATTATGTCCGGCT
*
68930320 AAGCCCCGA
1 AAGACCCGA
68930329 ACTAAAGGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.20
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTAGAGATTATGTCCGGCT
Found at i:68932200 original size:12 final size:12
Alignment explanation
Indices: 68932169--68932210 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
68932159 TCGGTGAGTT
68932169 ACACGGG-TGAGG
1 ACACGGGCTGA-G
*
68932181 ACATGGGCTGAG
1 ACACGGGCTGAG
*
68932193 ACACGGGCTAAG
1 ACACGGGCTGAG
68932205 ACACGG
1 ACACGG
68932211 TCGTGTGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
12 23 0.88
13 3 0.12
ACGTcount: A:0.29, C:0.21, G:0.40, T:0.10
Consensus pattern (12 bp):
ACACGGGCTGAG
Found at i:68934051 original size:2 final size:2
Alignment explanation
Indices: 68934044--68934070 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68934034 TTATACATAA
68934044 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
68934071 CTTCTCATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68936683 original size:52 final size:52
Alignment explanation
Indices: 68936605--68936707 Score: 206
Period size: 52 Copynumber: 2.0 Consensus size: 52
68936595 GAGAGTGATA
68936605 TTTAGATCTTGATAGGACCATGTTAGAAAGTAGTGGAAATGGTTAGATTAAT
1 TTTAGATCTTGATAGGACCATGTTAGAAAGTAGTGGAAATGGTTAGATTAAT
68936657 TTTAGATCTTGATAGGACCATGTTAGAAAGTAGTGGAAATGGTTAGATTAA
1 TTTAGATCTTGATAGGACCATGTTAGAAAGTAGTGGAAATGGTTAGATTAA
68936708 GTTAGAAATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.34
Consensus pattern (52 bp):
TTTAGATCTTGATAGGACCATGTTAGAAAGTAGTGGAAATGGTTAGATTAAT
Found at i:68938191 original size:16 final size:16
Alignment explanation
Indices: 68938170--68938215 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
68938160 AATTGGGTTG
68938170 AGAAAATTATTTAATT
1 AGAAAATTATTTAATT
*
68938186 AGAAAATTAATTAATT
1 AGAAAATTATTTAATT
68938202 --AAAATTAATTTAAT
1 AGAAAATT-ATTTAAT
68938216 AAATAATGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 6 0.22
15 6 0.22
16 15 0.56
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (16 bp):
AGAAAATTATTTAATT
Found at i:68941170 original size:29 final size:28
Alignment explanation
Indices: 68941136--68941238 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
68941126 TACTCAATCA
*
68941136 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
68941165 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
68941194 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
68941223 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68941239 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:68949188 original size:29 final size:28
Alignment explanation
Indices: 68949154--68949256 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
68949144 TACTCAATCA
*
68949154 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
68949183 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
68949212 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
68949241 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68949257 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:68954090 original size:20 final size:20
Alignment explanation
Indices: 68954065--68954112 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
68954055 CTGAGGACAT
68954065 GGGCGTGTCCCAAGCCACAC
1 GGGCGTGTCCCAAGCCACAC
68954085 GGGCGTGTCCCAAGCCACAC
1 GGGCGTGTCCCAAGCCACAC
68954105 GGGCGTGT
1 GGGCGTGT
68954113 GTGACCACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.12
Consensus pattern (20 bp):
GGGCGTGTCCCAAGCCACAC
Found at i:68954132 original size:16 final size:17
Alignment explanation
Indices: 68954099--68954134 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
68954089 GTGTCCCAAG
68954099 CCACACGGGCGTGTGTGA
1 CCACACGGGCG-GTGTGA
68954117 CCACACGGGC-GTGTGA
1 CCACACGGGCGGTGTGA
68954133 CC
1 CC
68954135 CTGTTTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.17, C:0.33, G:0.36, T:0.14
Consensus pattern (17 bp):
CCACACGGGCGGTGTGA
Found at i:68954854 original size:59 final size:58
Alignment explanation
Indices: 68954776--68954926 Score: 176
Period size: 59 Copynumber: 2.6 Consensus size: 58
68954766 CATCCATTTT
* ** **
68954776 CATAATCGATAGCTGAAGCTATCCCTTTTCATAATCGACAGTCGAAGCTATCCCCATTC
1 CATATTCGATAGCCAAAGCTATCCCTTTTCATAATCGACACCCGAAGCTAT-CCCATTC
* * * *
68954835 CATATTCGATAGCCAAAGCTATCCCCTTTTCATATTCGATACCCGAAGCTATCCCTTTT
1 CATATTCGATAGCCAAAGCTAT-CCCTTTTCATAATCGACACCCGAAGCTATCCCATTC
* * *
68954894 CATATTTGAAAGCCTAAGCTATCCCTTTTCATA
1 CATATTCGATAGCCAAAGCTATCCCTTTTCATA
68954927 TTACATAGCT
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
58 11 0.14
59 43 0.54
60 25 0.32
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.32
Consensus pattern (58 bp):
CATATTCGATAGCCAAAGCTATCCCTTTTCATAATCGACACCCGAAGCTATCCCATTC
Found at i:68954856 original size:30 final size:30
Alignment explanation
Indices: 68954772--68954928 Score: 185
Period size: 29 Copynumber: 5.3 Consensus size: 30
68954762 TCACCATCCA
* *
68954772 TTTTCATAATCGATAGCTGAAGCTAT-CCC
1 TTTTCATATTCGATAGCCGAAGCTATCCCC
* * *
68954801 TTTTCATAATCGACAGTCGAAGCTATCCCC
1 TTTTCATATTCGATAGCCGAAGCTATCCCC
* * *
68954831 ATTCCATATTCGATAGCCAAAGCTATCCCC
1 TTTTCATATTCGATAGCCGAAGCTATCCCC
*
68954861 TTTTCATATTCGATACCCGAAGCTAT-CCC
1 TTTTCATATTCGATAGCCGAAGCTATCCCC
* * *
68954890 TTTTCATATTTGAAAGCCTAAGCTAT-CCC
1 TTTTCATATTCGATAGCCGAAGCTATCCCC
68954919 TTTTCATATT
1 TTTTCATATT
68954929 ACATAGCTTG
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 61 0.55
30 49 0.45
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (30 bp):
TTTTCATATTCGATAGCCGAAGCTATCCCC
Found at i:68955130 original size:23 final size:22
Alignment explanation
Indices: 68955098--68955141 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
68955088 AACCAATCCA
68955098 ATTCAACATATTT-TCAAGATAG
1 ATTCAACATATTTAT-AAGATAG
68955120 ATTCATACATATTTATAAGATA
1 ATTCA-ACATATTTATAAGATA
68955142 ACCTCATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 14 0.70
24 1 0.05
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (22 bp):
ATTCAACATATTTATAAGATAG
Found at i:68961486 original size:54 final size:54
Alignment explanation
Indices: 68961418--68961524 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
68961408 TTTAGTTTAC
* *
68961418 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATAC-CAAAGTACCCTCGATTTG
* * *
68961472 TAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCTCGATTT
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAGTACCCTCGATTT
68961525 ACAGAATTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 8 0.17
54 38 0.83
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAGTACCCTCGATTTG
Found at i:68961521 original size:27 final size:27
Alignment explanation
Indices: 68961418--68961521 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
68961408 TTTAGTTTAC
* * *
68961418 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-CTTG
* *
68961445 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGACTTG
*
68961472 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGACTTG
*
68961499 TAAAATTAC-CAAAGTACCCTCGA
1 TAAAATTACTGAAA-TACCCTCGA
68961522 TTTACAGAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.04
27 63 0.94
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGACTTG
Found at i:68961532 original size:27 final size:27
Alignment explanation
Indices: 68961513--68961715 Score: 208
Period size: 27 Copynumber: 7.8 Consensus size: 27
68961503 ATTACCAAAG
*
68961513 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
68961540 TACCC-CTGATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCATTT
* * * *
68961567 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
68961594 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
68961621 TACCCTCAATTTACAG-------A-TT
1 TACCCTCGATTTACAGAATTACCATTT
* *
68961640 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
68961667 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
68961694 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
68961716 TAAAATACCC
Statistics
Matches: 149, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
19 16 0.11
26 2 0.01
27 130 0.87
28 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:68961642 original size:46 final size:46
Alignment explanation
Indices: 68961592--68961688 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 46
68961582 TAATTATCGT
*
68961592 TTTACCCTCGACTTACAGAATTACCGTTTTACCCTCAATTTACAGA
1 TTTACCCTCGACTTACAGAATTACCATTTTACCCTCAATTTACAGA
* * * **
68961638 TTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGA
1 TTTACCCTCGACTTACAGAATTACCATTTTACCCTCAATTTACAGA
*
68961684 ATTAC
1 TTTAC
68961689 TATTTTACCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (46 bp):
TTTACCCTCGACTTACAGAATTACCATTTTACCCTCAATTTACAGA
Found at i:68961650 original size:73 final size:73
Alignment explanation
Indices: 68961565--68961708 Score: 191
Period size: 73 Copynumber: 2.0 Consensus size: 73
68961555 TAATTACCAT
* * *
68961565 TTTACCCCCGATTTACATAATTA-TCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCA
1 TTTACCCCCGATTTACAGAATTACT-ATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCA
68961629 ATTTACAGA
65 ATTTACAGA
* * * * * *
68961638 TTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGA
1 TTTACCCCCGATTTACAGAATTACTATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCAA
68961703 TTTACA
66 TTTACA
68961709 AAATTACTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 60 0.98
74 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (73 bp):
TTTACCCCCGATTTACAGAATTACTATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCAA
TTTACAGA
Found at i:68961661 original size:19 final size:19
Alignment explanation
Indices: 68961620--68961661 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
68961610 AATTACCGTT
*
68961620 TTACCCTCAATTTACAGAT
1 TTACCCTCAATTTACAGAA
* *
68961639 TTACCCTCGATTTATAGAA
1 TTACCCTCAATTTACAGAA
68961658 TTAC
1 TTAC
68961662 TATTTTACCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (19 bp):
TTACCCTCAATTTACAGAA
Found at i:68961725 original size:100 final size:100
Alignment explanation
Indices: 68961538--68961726 Score: 220
Period size: 100 Copynumber: 1.9 Consensus size: 100
68961528 GAATTACTAT
* * *
68961538 TTTACCCCTGATTTACATAATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGA
1 TTTACCCCTGATTTACAGAATTACCATTTTACCCCCGATTTACAGAATTATCATTTTACCCTCGA
* ****
68961603 CTTACAGAATTACCGTTTTACCCTCAATTTACAGA
66 CTTACAAAATTACCAAAATACCCTCAATTTACAGA
* * **
68961638 TTTA-CCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTA-CTATTTTACCCTC
1 TTTACCCCT-GATTTACAGAATTACCATTTTACCCCCGATTTACAGAATTATC-ATTTTACCCTC
* *
68961701 GATTTACAAAATTACTAAAATACCCT
64 GACTTACAAAATTACCAAAATACCCT
68961727 TGGTTTGTAA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
99 5 0.07
100 68 0.93
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.39
Consensus pattern (100 bp):
TTTACCCCTGATTTACAGAATTACCATTTTACCCCCGATTTACAGAATTATCATTTTACCCTCGA
CTTACAAAATTACCAAAATACCCTCAATTTACAGA
Found at i:68961741 original size:54 final size:54
Alignment explanation
Indices: 68961637--68961833 Score: 164
Period size: 54 Copynumber: 3.6 Consensus size: 54
68961627 CAATTTACAG
* *** * ** * *
68961637 ATTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTA
1 ATTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA
* *
68961691 TTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA
1 ATTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA
** * * * * *
68961745 AAATACCC-CTAGTTTGTAAAATTACCAAAATACCATTGGTTTGTGAAATTACCGA
1 ATTTACCCTCGA-TTTATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACC-A
* * * *
68961800 A-ATACCCTCAATTTGTAAAATTACCAAAATACCC
1 ATTTACCCTCGATTTATAAAATTACTAAAATACCC
68961834 CTGATTTACA
Statistics
Matches: 118, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
53 2 0.02
54 112 0.95
55 4 0.03
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (54 bp):
ATTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA
Found at i:68961856 original size:54 final size:53
Alignment explanation
Indices: 68961694--68961946 Score: 172
Period size: 54 Copynumber: 4.7 Consensus size: 53
68961684 ATTACTATTT
* ** *
68961694 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGG-TT-TACAAATTA-CAGAAA
* * ** *
68961748 TACCC-CTAGTTTGTAAAATTACCAAAATACCATTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGTTT-ACAAATTACAGAAA
* *
68961802 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTACAAA-TTACAGAAA
* * ** * * *
68961856 TACCCTTGACTTCCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCC-TCAATTTGT-AAAATTACCA-AAATACCCTTGGTTTAC-AAATTACAGAAA
*** * * *
68961912 TACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTG
68961947 TAGTATGAAA
Statistics
Matches: 154, Mismatches: 34, Indels: 22
0.73 0.16 0.10
Matches are distributed among these distances:
52 1 0.01
53 7 0.05
54 97 0.63
55 12 0.08
56 34 0.22
57 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTACAAATTACAGAAA
Found at i:68961920 original size:27 final size:27
Alignment explanation
Indices: 68961667--68961946 Score: 152
Period size: 27 Copynumber: 10.3 Consensus size: 27
68961657 ATTACTATTT
* * * ***
68961667 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
68961694 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
**
68961721 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * **
68961748 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* *** *
68961775 TACCATTGGTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*** **
68961802 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
68961829 TACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGGTTTACAAAATTACCA-AAA
* *
68961856 TACCCTTGACTTCCTA-AAAATTA-TAGAAA
1 TACCCTTG-GTT--TACAAAATTACCA-AAA
* **
68961885 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
** * *
68961912 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*
68961939 CACCCTTG
1 TACCCTTG
68961947 TAGTATGAAA
Statistics
Matches: 203, Mismatches: 44, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
26 4 0.02
27 174 0.86
28 5 0.02
29 18 0.09
30 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:68961998 original size:27 final size:27
Alignment explanation
Indices: 68961977--68962068 Score: 141
Period size: 27 Copynumber: 3.4 Consensus size: 27
68961967 ACCCCTATTA
68961977 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAGTGACCGTAAAGCCCCTGTAG
*
68962004 GGTAAAGTGACTGTAAAGCCCCTGTAG
1 GGTAAAGTGACCGTAAAGCCCCTGTAG
*
68962031 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAGTGACCGTAA-AGCCCCTGTAG
*
68962058 GGTAAAATGAC
1 GGTAAAGTGAC
68962069 GAATATGCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (27 bp):
GGTAAAGTGACCGTAAAGCCCCTGTAG
Found at i:68962015 original size:54 final size:54
Alignment explanation
Indices: 68961954--68962068 Score: 137
Period size: 54 Copynumber: 2.1 Consensus size: 54
68961944 TTGTAGTATG
*
68961954 AAATGACT-AAAATACCCCTATTA-GGTAAAGTGACCGTAA-AGCCCCTGTAGGGTA
1 AAATGACTGAAAA-ACCCCT-GTAGGGTAAAGTGACCGTAATA-CCCCTGTAGGGTA
* * * *
68962008 AAGTGACTGTAAAGCCCCTGTAGGGTAAAGTGACCGTAATACCCCTGTATGGTA
1 AAATGACTGAAAAACCCCTGTAGGGTAAAGTGACCGTAATACCCCTGTAGGGTA
68962062 AAATGAC
1 AAATGAC
68962069 GAATATGCCC
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
53 2 0.04
54 46 0.88
55 4 0.08
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (54 bp):
AAATGACTGAAAAACCCCTGTAGGGTAAAGTGACCGTAATACCCCTGTAGGGTA
Found at i:68962899 original size:26 final size:26
Alignment explanation
Indices: 68962870--68962955 Score: 136
Period size: 26 Copynumber: 3.3 Consensus size: 26
68962860 GAGGAAGTGC
*
68962870 AAAAGGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
68962896 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
68962922 AAAAGGGTTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68962948 AAAAGGGC
1 AAAAGGGC
68962956 ATAAAAAGGG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.24
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:68962948 original size:52 final size:52
Alignment explanation
Indices: 68962870--68963082 Score: 293
Period size: 52 Copynumber: 3.9 Consensus size: 52
68962860 GAGGAAGTGC
*
68962870 AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
*
68962922 AAAAGGGTTTATGCCCCAGTTTACCGAAAAGGGCATAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACC-------G----AAAAGGGCTTATGCCCCAGTTTATTG
*
68962985 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
68963037 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
68963083 ATTAAAGAGG
Statistics
Matches: 145, Mismatches: 5, Indels: 23
0.84 0.03 0.13
Matches are distributed among these distances:
51 10 0.07
52 84 0.58
56 1 0.01
59 1 0.01
63 49 0.34
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:68962972 original size:37 final size:37
Alignment explanation
Indices: 68962922--68962992 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
68962912 CAGTTTATTG
*
68962922 AAAAGGGTTTATGCCCCAGTTTACCGAAAAGGGCATA
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCATA
**
68962959 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGC
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGC
68962993 TTATGCCCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (37 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCATA
Found at i:68962995 original size:26 final size:26
Alignment explanation
Indices: 68962959--68963082 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
68962949 AAAGGGCATA
**
68962959 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
68962985 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
68963011 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68963037 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68963063 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
68963083 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 10 0.11
26 80 0.89
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:68963023 original size:89 final size:89
Alignment explanation
Indices: 68962870--68963044 Score: 269
Period size: 89 Copynumber: 2.0 Consensus size: 89
68962860 GAGGAAGTGC
** *
68962870 AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGTTTATG
1 AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
68962935 CCCCAGTTTACCGAAAAGGGCATA
66 CCCCAGTTTACCGAAAAGGGCATA
* ** *
68962959 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
**
68963024 CCCCAGTTTATTGAAAAGGGC
66 CCCCAGTTTACCGAAAAGGGC
68963045 TTATGCCCCA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 77 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (89 bp):
AAAAGGGCTTATGCCCCAATTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
CCCCAGTTTACCGAAAAGGGCATA
Found at i:68963292 original size:42 final size:42
Alignment explanation
Indices: 68963227--68963318 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
68963217 TAGTCTCCCC
** * * *
68963227 AAATGGGCTTGCATACACTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACACTCATTGACATTACATATAATATTG
68963269 AAATGGGCTTGCATACA-TCCATTGACATTACATATAATATTG
1 AAATGGGCTTGCATACACT-CATTGACATTACATATAATATTG
68963311 AAATGGGC
1 AAATGGGC
68963319 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 1 0.02
42 43 0.98
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACACTCATTGACATTACATATAATATTG
Found at i:68963377 original size:31 final size:31
Alignment explanation
Indices: 68963342--68963416 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
68963332 CGTTTACAGT
68963342 AAAGGCTTTGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTTGGCCCAGTGAAATGATTTATGA
*
68963373 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTTGGCCCAGTGAAATGATTTATGA
*
68963404 AAAGGCTTCGGCC
1 AAAGGCTTTGGCC
68963417 TAGTAATCGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGAAATGATTTATGA
Found at i:68965945 original size:31 final size:31
Alignment explanation
Indices: 68965907--68965967 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
68965897 TTTCATATTT
68965907 CATATTTCATAACACTGGGCCGAAGCCTTTC
1 CATATTTCATAACACTGGGCCGAAGCCTTTC
**
68965938 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTGGGCCGAAGCCTTT
68965968 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCGAAGCCTTTC
Found at i:68966235 original size:23 final size:23
Alignment explanation
Indices: 68966181--68966323 Score: 241
Period size: 23 Copynumber: 6.1 Consensus size: 23
68966171 CCTAGCCTCT
*
68966181 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68966204 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
68966228 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
68966251 TTTAATAACTGGGGCATAAACCC
1 TTTAATAACTGGGGCATAAGCCC
*
68966274 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
68966298 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68966321 TTT
1 TTT
68966324 TGCACTTCCT
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
23 70 0.62
24 43 0.38
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:68966261 original size:70 final size:70
Alignment explanation
Indices: 68966181--68966323 Score: 261
Period size: 70 Copynumber: 2.0 Consensus size: 70
68966171 CCTAGCCTCT
68966181 TTTAATAACTGGGGCA-AAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAA-CCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
68966245 AAGCCC
65 AAGCCC
*
68966251 TTTAATAACTGGGGCATAAACCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCATAAACCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
68966316 AGCCC
66 AGCCC
68966321 TTT
1 TTT
68966324 TGCACTTCCT
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
70 68 0.96
71 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (70 bp):
TTTAATAACTGGGGCATAAACCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
AGCCC
Found at i:68966325 original size:47 final size:47
Alignment explanation
Indices: 68966160--68966324 Score: 253
Period size: 47 Copynumber: 3.5 Consensus size: 47
68966150 GCTTTATCAT
* *
68966160 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTA
68966209 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
* *
68966255 ATAACTGGGGCATAAACCCTTTTGATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
68966302 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
68966325 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
46 22 0.20
47 70 0.64
48 5 0.05
49 12 0.11
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:68966396 original size:9 final size:9
Alignment explanation
Indices: 68966382--68966427 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
68966372 ATCTCATGTG
68966382 CATATCATA
1 CATATCATA
68966391 CATATCATA
1 CATATCATA
* *
68966400 CATGTCATGTG
1 CATATCA--TA
68966411 CATATCATA
1 CATATCATA
68966420 CATATCAT
1 CATATCAT
68966428 GTTTATCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 24 0.77
11 7 0.23
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:68966398 original size:20 final size:20
Alignment explanation
Indices: 68966391--68966429 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
68966381 GCATATCATA
*
68966391 CATATCATACATGTCATGTG
1 CATATCATACATATCATGTG
68966411 CATATCATACATATCATGT
1 CATATCATACATATCATGT
68966430 TTATCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
CATATCATACATATCATGTG
Found at i:68966412 original size:29 final size:29
Alignment explanation
Indices: 68966370--68966427 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
68966360 GCATTTATGA
68966370 ACATCTCATGTGCATATCATACATATCAT
1 ACATCTCATGTGCATATCATACATATCAT
*
68966399 ACATGTCATGTGCATATCATACATATCAT
1 ACATCTCATGTGCATATCATACATATCAT
68966428 GTTTATCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (29 bp):
ACATCTCATGTGCATATCATACATATCAT
Found at i:68971967 original size:28 final size:28
Alignment explanation
Indices: 68971927--68971982 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
68971917 AAACATTAAA
68971927 ATTTCCTAACAAAATTTTAATACCACAT
1 ATTTCCTAACAAAATTTTAATACCACAT
68971955 ATTTCCTAACAAAATTTTAATACCACAT
1 ATTTCCTAACAAAATTTTAATACCACAT
68971983 CACTAACTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (28 bp):
ATTTCCTAACAAAATTTTAATACCACAT
Found at i:68972284 original size:29 final size:29
Alignment explanation
Indices: 68972247--68972386 Score: 160
Period size: 29 Copynumber: 4.8 Consensus size: 29
68972237 AGGCCATTAC
68972247 ATAGCTGAAGCTATCCCTTTTCAT-ATTAG
1 ATAGCTGAAGCTATCCCTTTTCATAATT-G
* **
68972276 ATAGCTGAAACTATCCCTTTTCATGTTTG
1 ATAGCTGAAGCTATCCCTTTTCATAATTG
* * *
68972305 ATGATCAT-CA-CCATCCCTTTTCATAATTG
1 AT-AGC-TGAAGCTATCCCTTTTCATAATTG
* *
68972334 ATAGCCGGAGCTATCCCTTTTCATAATTG
1 ATAGCTGAAGCTATCCCTTTTCATAATTG
68972363 ATAGCTGAAGCTATCCCTTTTCAT
1 ATAGCTGAAGCTATCCCTTTTCAT
68972387 TGGTCGATGA
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
28 3 0.03
29 84 0.90
30 5 0.05
31 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.38
Consensus pattern (29 bp):
ATAGCTGAAGCTATCCCTTTTCATAATTG
Found at i:68975817 original size:13 final size:13
Alignment explanation
Indices: 68975801--68975826 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68975791 GGAATGATTT
68975801 TTTGAAAATTTTG
1 TTTGAAAATTTTG
68975814 TTTGAAAATTTTG
1 TTTGAAAATTTTG
68975827 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:68977007 original size:20 final size:20
Alignment explanation
Indices: 68976979--68977053 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
68976969 CTAGGAAATA
68976979 TGTGATCTGAACTCATGAGT
1 TGTGATCTGAACTCATGAGT
* ** *
68976999 TGTGGTCTGAGTTCATGATAT
1 TGTGATCTGAACTCATGA-GT
68977020 ATGTGACATCTGAACTCATTGAGT
1 -TGTG--ATCTGAACTCA-TGAGT
*
68977044 TGTGGTCTGA
1 TGTGATCTGA
68977054 GTTCATGATG
Statistics
Matches: 41, Mismatches: 9, Indels: 9
0.69 0.15 0.15
Matches are distributed among these distances:
20 15 0.37
21 6 0.15
22 4 0.10
23 4 0.10
24 9 0.22
25 3 0.07
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:68977050 original size:45 final size:44
Alignment explanation
Indices: 68976976--68977072 Score: 162
Period size: 45 Copynumber: 2.2 Consensus size: 44
68976966 TCACTAGGAA
68976976 ATATGTG--ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGAT
1 ATATGTGACATCTGAACTCATGAGTTGTGGTCTGAGTTCATGAT
68977018 ATATGTGACATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
1 ATATGTGACATCTGAACTCA-TGAGTTGTGGTCTGAGTTCATGAT
*
68977063 GTATGTGACA
1 ATATGTGACA
68977073 CATGTTTTGG
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
42 7 0.14
44 11 0.22
45 33 0.65
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.37
Consensus pattern (44 bp):
ATATGTGACATCTGAACTCATGAGTTGTGGTCTGAGTTCATGAT
Found at i:68977433 original size:2 final size:2
Alignment explanation
Indices: 68977426--68977451 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
68977416 TGTGGTAAGA
68977426 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
68977452 GAAGAATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68985082 original size:18 final size:18
Alignment explanation
Indices: 68985058--68985098 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
68985048 TATCTCATGT
*
68985058 ATCATATTATCCATGTAA
1 ATCATATAATCCATGTAA
* *
68985076 TTCATATAATTCATGTAA
1 ATCATATAATCCATGTAA
68985094 ATCAT
1 ATCAT
68985099 GTAACTCATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (18 bp):
ATCATATAATCCATGTAA
Found at i:68985107 original size:18 final size:18
Alignment explanation
Indices: 68985069--68985107 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
68985059 TCATATTATC
* *
68985069 CATGTAATTCATATAATT
1 CATGTAAATCATATAACT
*
68985087 CATGTAAATCATGTAACT
1 CATGTAAATCATATAACT
68985105 CAT
1 CAT
68985108 AATTCATGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (18 bp):
CATGTAAATCATATAACT
Found at i:68988941 original size:23 final size:23
Alignment explanation
Indices: 68988872--68988948 Score: 93
Period size: 23 Copynumber: 3.4 Consensus size: 23
68988862 CTGAGCTGAT
68988872 AAACGGTAAGCCCCGAAGAGCTG
1 AAACGGTAAGCCCCGAAGAGCTG
* * **
68988895 -AACGGTAAGCTCCGTAGATTTG
1 AAACGGTAAGCCCCGAAGAGCTG
* *
68988917 AAACGATATGCCCCGAAGAGCTG
1 AAACGGTAAGCCCCGAAGAGCTG
68988940 AAACGGTAA
1 AAACGGTAA
68988949 ACTCATATGA
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
22 18 0.44
23 23 0.56
ACGTcount: A:0.35, C:0.22, G:0.27, T:0.16
Consensus pattern (23 bp):
AAACGGTAAGCCCCGAAGAGCTG
Found at i:68990320 original size:31 final size:31
Alignment explanation
Indices: 68990278--68990341 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
68990268 CCTTTTCATA
* *
68990278 TTTCATTTTTCATAACACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
68990309 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
68990340 TT
1 TT
68990342 ACTATAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:68992312 original size:47 final size:47
Alignment explanation
Indices: 68992236--68992548 Score: 455
Period size: 47 Copynumber: 6.5 Consensus size: 47
68992226 TATTAAAATT
*
68992236 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGTCGATGTGATGAA
1 TGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAA
*
68992285 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
68992332 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
68992381 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
68992428 TGTGAAGGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * *
68992477 TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
68992524 TGTGGAAGTGTATAAATGTGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
68992549 TCCCGAAGGG
Statistics
Matches: 244, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
47 138 0.57
49 106 0.43
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:68992347 original size:96 final size:96
Alignment explanation
Indices: 68992236--68992548 Score: 488
Period size: 96 Copynumber: 3.3 Consensus size: 96
68992226 TATTAAAATT
* * *
68992236 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
68992301 TGTGATAAGGCCTAATAGCCGATGTGATGAA
66 TGTGATAAGGCCTAATAGCCGATGTGATGAA
68992332 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
68992397 TGTGATAAGGCCTAATGGCCGATGTGATGAA
66 TGTGATAAGGCCTAATAGCCGATGTGATGAA
* *
68992428 TGTGAAGGTGTATATATATGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
68992493 TGTGATAAGGCCGAGTGGCCAACGTGATGGA
66 TGTGATAAGGCCTAATAGCCGATGTGATGAA
68992524 TGTGGAA-GTGTATA-A-ATGTGATAAG
1 TGT-GAAGGTGTATATATATGTGATAAG
68992549 TCCCGAAGGG
Statistics
Matches: 205, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
94 10 0.05
95 1 0.00
96 191 0.93
97 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGATGTGATGAA
Found at i:68994641 original size:7 final size:7
Alignment explanation
Indices: 68994629--68994657 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
68994619 TCTTACACTG
68994629 TATACCT
1 TATACCT
68994636 TATACCT
1 TATACCT
68994643 TATACCT
1 TATACCT
68994650 TATACCT
1 TATACCT
68994657 T
1 T
68994658 GTGATCTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.45
Consensus pattern (7 bp):
TATACCT
Found at i:69008623 original size:11 final size:11
Alignment explanation
Indices: 69008609--69008684 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
69008599 CAATATTGAT
69008609 ATGATATGCAC
1 ATGATATGCAC
*
69008620 ATGATATG--T
1 ATGATATGCAC
69008629 ATGATATGCAC
1 ATGATATGCAC
*
69008640 ATGATATGTAC
1 ATGATATGCAC
*
69008651 --GACATGCAC
1 ATGATATGCAC
*
69008660 ATGATATG--T
1 ATGATATGCAC
69008669 ATGATATGCAC
1 ATGATATGCAC
69008680 ATGAT
1 ATGAT
69008685 GTATTCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:69008633 original size:20 final size:20
Alignment explanation
Indices: 69008608--69008684 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
69008598 ACAATATTGA
69008608 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
69008628 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
* *
69008648 TACGACATGCACATGATATG
1 TATGATATGCACATGATATG
69008668 TATGATATGCACATGAT
1 TATGATATGCACATGAT
69008685 GTATTCATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Done.