Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 224 of 438
Found at i:69008767 original size:26 final size:26
Alignment explanation
Indices: 69008734--69008805 Score: 112
Period size: 26 Copynumber: 2.8 Consensus size: 26
69008724 GAGGAAGTGC
69008734 AAAA-GGCTTATGCCCCAGTTTATCAG
1 AAAAGGGCTTATGCCCCAGTTTA-CAG
*
69008760 -AAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACAG
69008785 AAAAGGGCTTATGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
69008806 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 5 0.12
26 38 0.88
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACAG
Found at i:69015128 original size:40 final size:40
Alignment explanation
Indices: 69014931--69015161 Score: 240
Period size: 39 Copynumber: 5.9 Consensus size: 40
69014921 ACTTGAAACC
* *
69014931 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* * * *
69014970 AATACCAGCTCGA-AGCCTGCGGGACTTT-TGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGCGGGACTTTAAGCCCGGATAT
* * * * *
69015009 ATTTCCAGCACGTAGCCTGC-GGACCTTAAGTCCGGTTAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* * *
69015048 AATTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGGTAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* *
69015087 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* *
69015127 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCG
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCG
69015162 ATACACATCA
Statistics
Matches: 164, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
38 17 0.10
39 97 0.59
40 50 0.30
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
Found at i:69015511 original size:2 final size:2
Alignment explanation
Indices: 69015504--69015532 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
69015494 TTACTTTCAG
69015504 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69015533 CGACTTTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69023035 original size:40 final size:40
Alignment explanation
Indices: 69022839--69023072 Score: 239
Period size: 39 Copynumber: 6.0 Consensus size: 40
69022829 ACTTGAAACC
* *
69022839 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* * * *
69022878 AATACCAGCTCGA-AGCCTGCGGGACTTT-TGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGCGGGACTTTAAGCCCGGATAT
* * * * *
69022917 -ATTTCAGCACGTAGCCTGC-GGACCTTAAGTCCGGTTAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* * *
69022955 AATTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGGTAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* *
69022994 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* *
69023034 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATA
69023073 CACATCAAAT
Statistics
Matches: 166, Mismatches: 23, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
37 6 0.04
38 32 0.19
39 74 0.45
40 54 0.33
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
Found at i:69028369 original size:40 final size:40
Alignment explanation
Indices: 69028260--69028439 Score: 269
Period size: 39 Copynumber: 4.6 Consensus size: 40
69028250 TATTCGAATG
*
69028260 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
69028299 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
69028338 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
69028378 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
69028418 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69028440 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 67 0.52
40 61 0.47
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:69028390 original size:79 final size:80
Alignment explanation
Indices: 69028260--69028439 Score: 287
Period size: 79 Copynumber: 2.3 Consensus size: 80
69028250 TATTCGAATG
*
69028260 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAG-TCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
*
69028323 TTTGTGCTAG-TGACT
66 TTTGTGCGAGTTG-CT
*
69028338 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
69028403 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
*
69028418 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69028440 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
78 15 0.16
79 52 0.55
80 26 0.27
81 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:69036530 original size:40 final size:40
Alignment explanation
Indices: 69036432--69036651 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
69036422 TATTCGAATG
69036432 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
69036471 ATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
69036510 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
69036550 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
69036590 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
69036630 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69036652 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
38 10 0.06
39 46 0.27
40 111 0.65
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:69050518 original size:42 final size:42
Alignment explanation
Indices: 69050461--69050574 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
69050451 TCGACTTATA
*
69050461 ATTTACGTGTAAGACCATGTCTCGGACATCAGCATCG-TATTTG
1 ATTT-CGTGTAAGACCATGTCTGGGACAT-AGCATCGATATTTG
* * *
69050504 ATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCGATATTTG
1 ATTTCGTGTAAGACCATGTCTGGGACA-TAGCATCGATATTTG
* * *
69050547 ATTACATGTAAGACCACGTCTGGGACAT
1 ATTTCGTGTAAGACCATGTCTGGGACAT
69050575 TGGTATTGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 27 0.45
43 33 0.55
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (42 bp):
ATTTCGTGTAAGACCATGTCTGGGACATAGCATCGATATTTG
Found at i:69052149 original size:25 final size:25
Alignment explanation
Indices: 69052121--69052190 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
69052111 CTCTTTTAAT
*
69052121 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
69052146 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
69052171 AACTAGGGCAAAACCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69052191 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:69052430 original size:27 final size:27
Alignment explanation
Indices: 69052395--69052457 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
69052385 CGGGCAAAAT
* *
69052395 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
69052422 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
*
69052449 AGTAATTTC
1 GGT-ATTTC
69052458 ACAAATTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTATTTCTACCCTACAAGGGTATTTC
Found at i:69052469 original size:54 final size:54
Alignment explanation
Indices: 69052437--69052727 Score: 361
Period size: 54 Copynumber: 5.4 Consensus size: 54
69052427 TTCTACCCTA
** * * *
69052437 CAAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTCTAAAC
*
69052491 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTTTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTCTAAAC
* *
69052545 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTGTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTCTAAAC
* ** * *
69052599 CAAGGGTATTCTACTAATTTTACAAACCAGGGGTATTTTAGTAATTTTAC-AAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTT-CTAAAC
* * * * *
69052653 CAGGGGTATTTTGGTAATTTTACTAA-TCGAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTCTAAAC
* **
69052707 CAAGGGCATTTCAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
69052728 GTAAATCGAG
Statistics
Matches: 206, Mismatches: 28, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
53 1 0.00
54 205 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTCTAAAC
Found at i:69052470 original size:27 final size:27
Alignment explanation
Indices: 69052440--69052700 Score: 308
Period size: 27 Copynumber: 9.7 Consensus size: 27
69052430 TACCCTACAA
** * **
69052440 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
69052467 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69052494 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
69052521 GGGTATTTTGGTAATTTTTTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69052548 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
69052575 GGGTATTTTGGTAATTGTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* **
69052602 GGGTATTCTACTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69052629 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
69052656 GGGTATTTTGGTAATTTTACTAATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
69052682 AGGGTATTTTGGTAATTTT
1 -GGGTATTTTGGTAATTTT
69052701 GTAAATCAAG
Statistics
Matches: 198, Mismatches: 35, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 1 0.01
27 197 0.99
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:69052707 original size:27 final size:27
Alignment explanation
Indices: 69052467--69052984 Score: 231
Period size: 27 Copynumber: 19.2 Consensus size: 27
69052457 CACAAATTAG
* * *
69052467 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
69052494 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
69052520 GGGGTATTTTGGTAATTTTTTAAACCAA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* *
69052548 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
69052574 GGGGTATTTTGGTAATTGTATAAACCAA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* ** * *
69052602 GGGTATTCTACTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
69052628 GGGGTATTTTAGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTATAAATCGA
69052655 GGGGTATTTTGGTAATTTTACT-AATCGA
1 -GGGTATTTTGGTAATTTTA-TAAATCGA
* *
69052683 GGGTATTTTGGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
* ** *
69052710 GGGCATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* ****
69052737 GGATAAAACGGTAA-TTTAGTAAATCGA
1 GGGTATTTTGGTAATTTTA-TAAATCGA
**** * *
69052764 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** *
69052791 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
69052818 GGGTAAAACT-ATAATTCTATAAATCGA
1 GGGT-ATTTTGGTAATTTTATAAATCGA
* ***** *
69052845 AGGTAAAACAGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
69052872 GGGTAAAATGATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
69052899 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
***** * *
69052926 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** *
69052953 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
69052980 GGGTA
1 GGGTA
69052985 AAATGGTAAT
Statistics
Matches: 422, Mismatches: 57, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
26 13 0.03
27 398 0.94
28 11 0.03
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:69052723 original size:81 final size:81
Alignment explanation
Indices: 69052467--69052727 Score: 310
Period size: 81 Copynumber: 3.2 Consensus size: 81
69052457 CACAAATTAG
* ** * *
69052467 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTAC-AAACTAGGGGTATTTTG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAAAC-AAGGGTATTTTG
*
69052531 GTAATTTTTTAAACCAA
65 GTAATTTTATAAACCAA
* * * * *
69052548 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTGTA-TAAACCAAGGGTATTCTA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAAA-CAAGGGTATTTTG
* * *
69052612 CTAATTTTACAAACCAG
65 GTAATTTTATAAACCAA
* *
69052629 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAATCGAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAAACAAGGGTATTTTGG
* *
69052694 TAATTTTGTAAATCAA
66 TAATTTTATAAACCAA
* *
69052710 GGGCATTTCAGTAATTTT
1 GGGTATTTTAGTAATTTT
69052728 GTAAATCGAG
Statistics
Matches: 151, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
81 147 0.97
82 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAAACAAGGGTATTTTGG
TAATTTTATAAACCAA
Found at i:69052750 original size:54 final size:54
Alignment explanation
Indices: 69052718--69053138 Score: 514
Period size: 54 Copynumber: 8.0 Consensus size: 54
69052708 AAGGGCATTT
* *
69052718 CAGTAATTTTGTAAATCGAGGATAAAACGGTAATT-TAGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTA-TAAATCGAGGGTAAAA
*
69052772 CGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * *
69052826 CTA-TAATTCTATAAATCGAAGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
1 C-AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * * *
69052880 -TGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAA
1 CAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
69052934 CAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
** * *
69052988 TGGTAATTC------T--A----AAAACGATAATTCTATAAATCGAGTGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* *
69053030 C-GATAATTCTGTAAATCGAGTGTAAAACGATAATTCTATAAATCGAGGGTAAAA
1 CAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * * *
69053084 CGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
69053138 C
1 C
69053139 GGTATGTAAC
Statistics
Matches: 321, Mismatches: 27, Indels: 38
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.00
42 35 0.11
46 1 0.00
48 2 0.01
50 1 0.00
54 277 0.86
55 4 0.01
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (54 bp):
CAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
Found at i:69052777 original size:81 final size:82
Alignment explanation
Indices: 69052693--69053142 Score: 415
Period size: 81 Copynumber: 5.7 Consensus size: 82
69052683 GGGTATTTTG
* * * ** * * *
69052693 GTAATTTTGTAAATCAAGGGCATTTCAGTAATTTTGTAAATCGAGGATAAAACGGTAATT-TAGT
1 GTAATTCTGTAAATCGAGGGAAAATCAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAGT
*
69052757 AAATCGAGGGTAAAACG
66 AAATCGAGGGTAAAACA
* **
69052774 GTAATTCTGTAAATCGAGGGTAAAA-CGGTAATTCTATAAATCGAGGGTAAAACTATAATTCTA-
1 GTAATTCTGTAAATCGAGGG-AAAATCAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAG
*
69052837 TAAATCGAAGGTAAAACA
65 TAAATCGAGGGTAAAACA
* * *
69052855 GTAATTCTATAAATCGAGGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAATGGTAATTCT-G
1 GTAATTCTGTAAATCGAGGG-AAAATCAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAG
69052918 TAAATCGAGGGTAAAACA
65 TAAATCGAGGGTAAAACA
* *
69052936 GTAATTCTGTAAATCGAGGGTAAAA-CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA-
1 GTAATTCTGTAAATCGAGGG-AAAATCAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAG
* **
69052999 -AAAACGA---TAATTCTA
65 TAAATCGAGGGTAAAAC-A
* * * * * *
69053014 -TAAATC-G---A--G-TGTAAAA-C-GATAATTCTGTAAATCGAGTGTAAAACGATAATTCTA-
1 GTAATTCTGTAAATCGAGGGAAAATCAG-TAATTCTATAAATCGAGGGTAAAACGGTAATTCTAG
*
69053068 TAAATCGAGGGTAAAACG
65 TAAATCGAGGGTAAAACA
* *
69053086 GTAATTCTGTAAATCAAGGGTAAAA-CAGTAATTCTGTAAATCGAGGGTAAAACGGTA
1 GTAATTCTGTAAATCGAGGG-AAAATCAGTAATTCTATAAATCGAGGGTAAAACGGTA
69053143 TGTAACAACC
Statistics
Matches: 304, Mismatches: 43, Indels: 44
0.78 0.11 0.11
Matches are distributed among these distances:
68 1 0.00
69 36 0.12
70 7 0.02
71 1 0.00
73 10 0.03
74 1 0.00
76 1 0.00
77 10 0.03
78 1 0.00
80 7 0.02
81 225 0.74
82 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.28
Consensus pattern (82 bp):
GTAATTCTGTAAATCGAGGGAAAATCAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAGT
AAATCGAGGGTAAAACA
Found at i:69052985 original size:27 final size:27
Alignment explanation
Indices: 69052720--69052998 Score: 407
Period size: 27 Copynumber: 10.3 Consensus size: 27
69052710 GGGCATTTCA
* * *
69052720 GTAATTTTGTAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
69052747 GTAATT-TAGTAAATCGAGGGTAAAACG
1 GTAATTCTA-TAAATCGAGGGTAAAACG
*
69052774 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69052801 GTAATTCTATAAATCGAGGGTAAAACT
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
69052828 ATAATTCTATAAATCGAAGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69052855 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
69052882 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
69052909 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69052936 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69052963 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
69052990 GTAATTCTA
1 GTAATTCTA
69052999 AAAACGATAA
Statistics
Matches: 230, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
26 1 0.00
27 228 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:69053003 original size:42 final size:42
Alignment explanation
Indices: 69052957--69053039 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
69052947 AATCGAGGGT
* * *
69052957 AAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
1 AAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTA
*
69052999 AAAACGATAATTCTATAAATCGAGTGTAAAACGATAATTCT
1 AAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCT
69053040 GTAAATCGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (42 bp):
AAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTA
Found at i:69053010 original size:69 final size:69
Alignment explanation
Indices: 69052937--69053067 Score: 199
Period size: 69 Copynumber: 1.9 Consensus size: 69
69052927 GGTAAAACAG
* * * *
69052937 TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAAAA
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTAAAA
69053002 ACGA
66 ACGA
* * *
69053006 TAATTCTATAAATCGAGTGTAAAACGATAATTCTGTAAATCGAGTGTAAAACGATAATTCTA
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTA
69053068 TAAATCGAGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 55 1.00
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.30
Consensus pattern (69 bp):
TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTAAAA
ACGA
Found at i:69053018 original size:123 final size:123
Alignment explanation
Indices: 69052876--69053120 Score: 384
Period size: 123 Copynumber: 2.0 Consensus size: 123
69052866 AATCGAGGGT
* * *
69052876 AAAATGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC-AGTAA
1 AAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGA-TAA
* * **
69052940 TTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
65 TTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTA
* *
69052999 AAAACGATAATTCTATAAATCGAGTGTAAAACGATAATTCTGTAAATCGAGTGTAAAACGATAAT
1 AAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAAT
*
69053064 TCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCT
66 TCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCT
69053121 GTAAATCGAG
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
123 110 0.99
124 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.28
Consensus pattern (123 bp):
AAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAAT
TCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTA
Found at i:69053030 original size:96 final size:96
Alignment explanation
Indices: 69052910--69053093 Score: 307
Period size: 96 Copynumber: 1.9 Consensus size: 96
69052900 GGTAAAATGG
* *
69052910 TAATTCTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 TAATTCTATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
*
69052974 AATCGAGGGTAAAATGGTAATTCTAAAAACGA
65 AATCGAGGGTAAAACGGTAATTCTAAAAACGA
* *
69053006 TAATTCTATAAATCGAGTGTAAAACGATAATTCTGTAAATCGAGTGTAAAACGATAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
69053071 ATCGAGGGTAAAACGGTAATTCT
66 ATCGAGGGTAAAACGGTAATTCT
69053094 GTAAATCAAG
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 81 0.99
97 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (96 bp):
TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAA
ATCGAGGGTAAAACGGTAATTCTAAAAACGA
Found at i:69053036 original size:27 final size:27
Alignment explanation
Indices: 69052999--69053139 Score: 212
Period size: 27 Copynumber: 5.2 Consensus size: 27
69052989 GGTAATTCTA
* *
69052999 AAAACGATAATTCTATAAATCGAGTGT
1 AAAACGATAATTCTGTAAATCGAGGGT
*
69053026 AAAACGATAATTCTGTAAATCGAGTGT
1 AAAACGATAATTCTGTAAATCGAGGGT
*
69053053 AAAACGATAATTCTATAAATCGAGGGT
1 AAAACGATAATTCTGTAAATCGAGGGT
* *
69053080 AAAACGGTAATTCTGTAAATCAAGGGT
1 AAAACGATAATTCTGTAAATCGAGGGT
69053107 AAAAC-AGTAATTCTGTAAATCGAGGGT
1 AAAACGA-TAATTCTGTAAATCGAGGGT
69053134 AAAACG
1 AAAACG
69053140 GTATGTAACA
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.26
Consensus pattern (27 bp):
AAAACGATAATTCTGTAAATCGAGGGT
Found at i:69053124 original size:177 final size:177
Alignment explanation
Indices: 69052822--69053142 Score: 556
Period size: 177 Copynumber: 1.8 Consensus size: 177
69052812 AATCGAGGGT
* *
69052822 AAAACTATAATTCTATAAATCGAAGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGATAAT
1 AAAACGATAATTCTATAAATCGAAGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAAT
* *
69052887 TCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCG
66 TCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCG
69052952 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
131 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
* *
69052999 AAAACGATAATTCTATAAATCG-AGTGTAAAAC-GATAATTCTGTAAATCGAGTGTAAAACGATA
1 AAAACGATAATTCTATAAATCGAAG-GTAAAACAG-TAATTCTATAAATCGAGGGTAAAACGATA
69053062 ATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAAT
64 ATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAAT
69053127 CGAGGGTAAAACGGTA
129 CGAGGGTAAAACGGTA
69053143 TGTAACAACC
Statistics
Matches: 136, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
176 3 0.02
177 133 0.98
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.27
Consensus pattern (177 bp):
AAAACGATAATTCTATAAATCGAAGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAAT
TCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCG
AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
Found at i:69054662 original size:28 final size:28
Alignment explanation
Indices: 69054622--69054700 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
69054612 GCAATCAAAT
* * * *
69054622 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTAAGA
*
69054650 ATGGCACTTAGTGTGCGAGATATTAAGA
1 ATGGCACTTAGTGTGCGAAATATTAAGA
* * *
69054678 ATGACACATAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
69054701 CTAATGATTC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTAAGA
Found at i:69056373 original size:27 final size:27
Alignment explanation
Indices: 69056298--69056423 Score: 163
Period size: 27 Copynumber: 4.8 Consensus size: 27
69056288 GTGTTCACGA
* *
69056298 TAATTCTGTAAATCGAGCGTGTAAAACGG
1 TAATTCTATAAATCGAG-G-GTAAAATGG
69056327 TAATT-TATAAAT-GAGGGTAAAATGG
1 TAATTCTATAAATCGAGGGTAAAATGG
69056352 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTATAAATCGAGGGTAAAATGG
* *
69056379 TAATTCTGTAAATC-AAGGT-AAAT-G
1 TAATTCTATAAATCGAGGGTAAAATGG
69056403 TAATTCTATAAATCGAGGGTA
1 TAATTCTATAAATCGAGGGTA
69056424 CTTTGGTAAT
Statistics
Matches: 87, Mismatches: 6, Indels: 11
0.84 0.06 0.11
Matches are distributed among these distances:
24 14 0.16
25 21 0.24
26 12 0.14
27 29 0.33
28 6 0.07
29 5 0.06
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
TAATTCTATAAATCGAGGGTAAAATGG
Found at i:69056419 original size:51 final size:52
Alignment explanation
Indices: 69056298--69056423 Score: 166
Period size: 51 Copynumber: 2.4 Consensus size: 52
69056288 GTGTTCACGA
* * *
69056298 TAATTCTGTAAATCGAGCGTGTAAAACGGTAATTTATAAATGAGGGTAAAATGG
1 TAATTCTATAAATCGAG-G-GTAAAACGGTAATTTATAAATCAAGGTAAAATGG
* *
69056352 TAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGT-AAAT-G
1 TAATTCTATAAATCGAGGGTAAAACGGTAATT-TATAAATCAAGGTAAAATGG
69056403 TAATTCTATAAATCGAGGGTA
1 TAATTCTATAAATCGAGGGTA
69056424 CTTTGGTAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
51 22 0.33
52 17 0.26
53 11 0.17
54 16 0.24
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (52 bp):
TAATTCTATAAATCGAGGGTAAAACGGTAATTTATAAATCAAGGTAAAATGG
Found at i:69056431 original size:51 final size:53
Alignment explanation
Indices: 69056346--69056494 Score: 151
Period size: 51 Copynumber: 2.8 Consensus size: 53
69056336 AATGAGGGTA
* *** * *
69056346 AAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAA-ATCAAGGT
1 AAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATTCTATAATATCAAGGC
* * * *
69056398 AAAT-GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTATAATTTGAGGGC
1 AAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATTCTATAATATCAAGGC
** *
69056450 ATTTCAGTAATTCTATAAATCGA-GGTACTTTGGTAATTTTATAAT
1 AAAT-AGTAATTCTATAAATCGAGGGTACTTTGGTAATTCTATAAT
69056495 TTGAGGGCAT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
51 34 0.41
52 10 0.12
53 22 0.27
54 17 0.20
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.38
Consensus pattern (53 bp):
AAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATTCTATAATATCAAGGC
Found at i:69056434 original size:27 final size:26
Alignment explanation
Indices: 69056298--69056474 Score: 146
Period size: 27 Copynumber: 6.7 Consensus size: 26
69056288 GTGTTCACGA
* *
69056298 TAATTCTGTAAATCGAGCGTGTAAAACGG
1 TAATTCTATAAATCGAG-G-GT-AAATGG
69056327 TAATT-TATAAAT-GAGGGTAAAATGG
1 TAATTCTATAAATCGAGGGT-AAATGG
69056352 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTATAAATCGAGGGT-AAATGG
* *
69056379 TAATTCTGTAAATC-AAGGTAAAT-G
1 TAATTCTATAAATCGAGGGTAAATGG
**
69056403 TAATTCTATAAATCGAGGGTACTTTGG
1 TAATTCTATAAATCGAGGGTA-AATGG
* * * * ** *
69056430 TAATTTTATAATTTGAGGGCATTTCAG
1 TAATTCTATAAATCGAGGGTAAAT-GG
69056457 TAATTCTATAAATCGAGG
1 TAATTCTATAAATCGAGG
69056475 TACTTTGGTA
Statistics
Matches: 126, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
24 14 0.11
25 22 0.17
26 16 0.13
27 63 0.50
28 6 0.05
29 5 0.04
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (26 bp):
TAATTCTATAAATCGAGGGTAAATGG
Found at i:69056491 original size:53 final size:54
Alignment explanation
Indices: 69056402--69056514 Score: 219
Period size: 53 Copynumber: 2.1 Consensus size: 54
69056392 CAAGGTAAAT
69056402 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTATAATTTGAGGGCATTTCA
1 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTATAATTTGAGGGCATTTCA
69056456 GTAATTCTATAAATCGA-GGTACTTTGGTAATTTTATAATTTGAGGGCATTTCA
1 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTATAATTTGAGGGCATTTCA
69056509 GTAATT
1 GTAATT
69056515 TGGTAAACTA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 42 0.71
54 17 0.29
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTATAATTTGAGGGCATTTCA
Found at i:69058665 original size:24 final size:25
Alignment explanation
Indices: 69058638--69058714 Score: 66
Period size: 25 Copynumber: 3.1 Consensus size: 25
69058628 GCCTAGCCTC
*
69058638 TTTTAAT-AATTGGGGAAAAGCCCT
1 TTTTAATAAACTGGGGAAAAGCCCT
** *
69058662 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGAAAAGCCCT
*** * *
69058687 TTTCGGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTGGGGAAAAGCCCT
69058712 TTT
1 TTT
69058715 AGCACTTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 5 0.11
25 41 0.89
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (25 bp):
TTTTAATAAACTGGGGAAAAGCCCT
Found at i:69058682 original size:25 final size:25
Alignment explanation
Indices: 69058648--69058714 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
69058638 TTTTAATAAT
* *
69058648 TGGGGAAAAGCCCTTTTTGGTAAAC
1 TGGGGCAAAGCCCTTTTCGGTAAAC
69058673 TGGGGCAAAGCCCTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTCGGTAAAC
*
69058698 TAGGGCAAAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
69058715 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGGTAAAC
Found at i:69058948 original size:27 final size:27
Alignment explanation
Indices: 69058918--69058978 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
69058908 AGGGCAAAAT
69058918 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69058945 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69058972 AGTAATT
1 GGTAATT
69058979 TCACAAATCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:69058993 original size:27 final size:27
Alignment explanation
Indices: 69058963--69059144 Score: 247
Period size: 27 Copynumber: 6.7 Consensus size: 27
69058953 TACCCTACAA
** * *
69058963 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
**
69058990 GGGTATTTTGGTAATTTTGTAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
69059017 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69059044 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69059071 GGGTATTTTGGTAATTTTACGAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69059098 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
69059125 GGGTATTTTGGTAATTTTAC
1 GGGTATTTTGGTAATTTTAC
69059145 TGATCGAGGG
Statistics
Matches: 139, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:69059021 original size:54 final size:54
Alignment explanation
Indices: 69058960--69059196 Score: 253
Period size: 54 Copynumber: 4.4 Consensus size: 54
69058950 TTCTACCCTA
** * **
69058960 CAAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
* ** *
69059014 CAGGGGTATTTTGGTAATTTTGTAAA-CTAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAAC
* * *
69059068 CAAGGGTATTTTGGTAATTTTACGAACCAGGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
* ** * ** *
69059122 CAGGGGTATTTTGGTAATTTTACTGATC-GAGGGCATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAAC
**
69059176 CAAGGGTATTTCAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
69059197 GTAAATCGAG
Statistics
Matches: 153, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.01
54 150 0.98
55 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
Found at i:69059058 original size:81 final size:81
Alignment explanation
Indices: 69058960--69059201 Score: 297
Period size: 81 Copynumber: 3.0 Consensus size: 81
69058950 TTCTACCCTA
** *
69058960 CAAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAGGGGTATTT
*
69059025 TGGTAATTTTGTAAAC
66 TAGTAATTTTGTAAAC
* * * ***
69059041 TAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACGAACCAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAGGGGTATTT
**
69059106 TAGTAATTTTACAAAC
66 TAGTAATTTTGTAAAC
* ** * * *
69059122 CAGGGGTATTTTGGTAATTTTACTGATC-GAGGGCATTTTGGTAATTTTGTAAATCAAGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTGTAAACCAGGGGTATT
*
69059186 TCAGTAATTTTGTAAA
65 TTAGTAATTTTGTAAA
69059202 TCGAGAGTAA
Statistics
Matches: 133, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
81 133 1.00
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAGGGGTATTT
TAGTAATTTTGTAAAC
Found at i:69059159 original size:27 final size:26
Alignment explanation
Indices: 69058962--69059196 Score: 218
Period size: 27 Copynumber: 8.7 Consensus size: 26
69058952 CTACCCTACA
** * *
69058962 AGGGTATTTCAGTAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTACAAACC
**
69058988 AGGGGTATTTTGGTAATTTTGTAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
** *
69059015 AGGGGTATTTTGGTAATTTTGTAAACTA
1 A-GGGTATTTTGGTAATTTTACAAAC-C
69059043 AGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
*
69059069 AAGGGTATTTTGGTAATTTTACGAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
*
69059096 AGGGGTATTTTAGTAATTTTACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
* * *
69059123 AGGGGTATTTTGGTAATTTTACTGATCG
1 A-GGGTATTTTGGTAATTTTAC-AAACC
* ** *
69059151 AGGGCATTTTGGTAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTACAAA-CC
**
69059178 AGGGTATTTCAGTAATTTT
1 AGGGTATTTTGGTAATTTT
69059197 GTAAATCGAG
Statistics
Matches: 177, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 170 0.96
28 4 0.02
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:69059624 original size:27 final size:27
Alignment explanation
Indices: 69059189--69059612 Score: 591
Period size: 27 Copynumber: 15.8 Consensus size: 27
69059179 GGGTATTTCA
* * * *
69059189 GTAATTTTGTAAATCGAGAGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69059216 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
69059243 GTAATTCTGTAAGTCGAGGGTAAAGCA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
69059270 GTAATTCTATCAATCGAGGGTAAATC-
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69059296 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
69059323 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69059350 GTAATTCTGTAAATCGA-GGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
69059376 GTAATTTTATAAATCGAGGATAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
69059403 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
69059430 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69059457 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
69059484 ATAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69059511 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69059538 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
69059565 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
69059592 GTAATTCTATAAATCGAGGGT
1 GTAATTCTATAAATCGAGGGT
69059613 GCTTTGGTAA
Statistics
Matches: 359, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
26 47 0.13
27 312 0.87
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:69061856 original size:24 final size:24
Alignment explanation
Indices: 69061829--69061913 Score: 100
Period size: 25 Copynumber: 3.5 Consensus size: 24
69061819 CTGGAGGCCT
*
69061829 AGCCTCTTTTAAT-AATTGGGGCAA
1 AGCC-CTTTTAGTAAATTGGGGCAA
* *
69061853 AGCCCTTTTTGGTAAACTGGGGCAA
1 AGCCC-TTTTAGTAAATTGGGGCAA
*
69061878 AGCCCTTTTCGGTAAATTGGGGCAA
1 AGCCCTTTT-AGTAAATTGGGGCAA
69061903 AGCCCTTTTAG
1 AGCCCTTTTAG
69061914 CACTTCCTCC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
23 1 0.02
24 14 0.26
25 38 0.72
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAGTAAATTGGGGCAA
Found at i:69061877 original size:25 final size:25
Alignment explanation
Indices: 69061845--69061911 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
69061835 TTTTAATAAT
*
69061845 TGGGGCAAAGCCCTTTTTGGTAAAC
1 TGGGGCAAAGCCCTTTTCGGTAAAC
*
69061870 TGGGGCAAAGCCCTTTTCGGTAAAT
1 TGGGGCAAAGCCCTTTTCGGTAAAC
69061895 TGGGGCAAAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
69061912 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGGTAAAC
Found at i:69062153 original size:27 final size:28
Alignment explanation
Indices: 69062121--69062178 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
69062111 AAAATGGTGA
* *
69062121 TTCTACCCTACAGGGGTATTTCGGT-AT
1 TTCTACCCTACAAGGGTATTTCAGTAAT
69062148 TTCTACCCTACAAGGGTATTTCAGTAAT
1 TTCTACCCTACAAGGGTATTTCAGTAAT
69062176 TTC
1 TTC
69062179 ACAAATCAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 23 0.82
28 5 0.18
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.38
Consensus pattern (28 bp):
TTCTACCCTACAAGGGTATTTCAGTAAT
Found at i:69062191 original size:27 final size:27
Alignment explanation
Indices: 69062161--69062421 Score: 308
Period size: 27 Copynumber: 9.7 Consensus size: 27
69062151 TACCCTACAA
** * *
69062161 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
69062188 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
69062215 GGGTATTTTGGTCATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69062242 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
69062269 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
69062296 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69062323 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
69062350 GGGTATTTTGGTAATTTTACTAATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** * *
69062376 AGGGTATTTTTGTAATTTTGTAAATCAA
1 -GGGTATTTTGGTAATTTTACAAACCAG
**
69062404 GGGTATTTCAGTAATTTT
1 GGGTATTTTGGTAATTTT
69062422 GTAAATCTAG
Statistics
Matches: 203, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 202 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:69062271 original size:81 final size:81
Alignment explanation
Indices: 69062158--69062421 Score: 343
Period size: 81 Copynumber: 3.3 Consensus size: 81
69062148 TTCTACCCTA
*
69062158 CAAGGGTATTTCAGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATT
1 CAAGGGTATTTCAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATT
* *
69062222 TTGGTCATTTTATAAAC
65 TTAGTAATTTTATAAAC
** * *
69062239 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
*
69062304 TAGTAATTTTACAAAC
66 TAGTAATTTTATAAAC
* * * * * *
69062320 TAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAATC-GAGGGTATT
1 CAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATT
* * *
69062384 TTTGTAATTTTGTAAAT
65 TTAGTAATTTTATAAAC
69062401 CAAGGGTATTTCAGTAATTTT
1 CAAGGGTATTTCAGTAATTTT
69062422 GTAAATCTAG
Statistics
Matches: 158, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
81 157 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
TAGTAATTTTATAAAC
Found at i:69062444 original size:27 final size:27
Alignment explanation
Indices: 69062387--69062813 Score: 512
Period size: 27 Copynumber: 15.8 Consensus size: 27
69062377 GGGTATTTTT
* * *** *
69062387 GTAATTTTGTAAATCAAGGGTATTTCA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69062414 GTAATTTTGTAAATCTAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
69062441 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
69062468 ATAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
69062495 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69062522 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
69062549 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69062576 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
69062603 GTAATTCTGTAAATCGAGAGTAAAGCA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
69062630 GTAATTTTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
69062657 GTAATTCTGTAAATCCAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69062684 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
69062711 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
69062738 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
69062765 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
69062792 GTAATTCTGTAAATCGCGGGTA
1 GTAATTCTGTAAATCGAGGGTA
69062814 CTTTGGTAAT
Statistics
Matches: 343, Mismatches: 57, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 343 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:69062826 original size:81 final size:81
Alignment explanation
Indices: 69062414--69062813 Score: 566
Period size: 81 Copynumber: 4.9 Consensus size: 81
69062404 GGGTATTTCA
* * * *
69062414 GTAATTTTGTAAATCTAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
69062479 AGTCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
69062495 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
69062560 AATCAAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * * *
69062576 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAGCAGTAATTTTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
69062641 AATTGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * **
69062657 GTAATTCTGTAAATCCAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
69062722 AATTGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * ** *
69062738 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
69062803 AATCGCGGGTA
66 AATCGAGGGTA
69062814 CTTTGGTAAT
Statistics
Matches: 289, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 289 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:69065085 original size:70 final size:70
Alignment explanation
Indices: 69064967--69065101 Score: 216
Period size: 70 Copynumber: 1.9 Consensus size: 70
69064957 CTCCGGAAGA
* * * *
69064967 ATGCATAAAATGTTTCGTTTCACTTTTGAGGGATATGACGCATCATTGGTGGAAGACATTGATAT
1 ATGCATAAAATGTGTCCTTTCACTTTTGAGAGATACGACGCATCATTGGTGGAAGACATTGATAT
69065032 CAAGG
66 CAAGG
* *
69065037 ATGCATAAAATGTGTCCTTTCACTTTTGAGAGATACGACGTATTATTGGTGGAAGACATTGATAT
1 ATGCATAAAATGTGTCCTTTCACTTTTGAGAGATACGACGCATCATTGGTGGAAGACATTGATAT
69065102 TTGTGGTTCC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (70 bp):
ATGCATAAAATGTGTCCTTTCACTTTTGAGAGATACGACGCATCATTGGTGGAAGACATTGATAT
CAAGG
Found at i:69077791 original size:13 final size:13
Alignment explanation
Indices: 69077775--69077801 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69077765 AAGAATAAAT
69077775 ATCCTCTGCCTCG
1 ATCCTCTGCCTCG
69077788 ATCCTCTGCCTCG
1 ATCCTCTGCCTCG
69077801 A
1 A
69077802 ATTGACGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.11, C:0.44, G:0.15, T:0.30
Consensus pattern (13 bp):
ATCCTCTGCCTCG
Found at i:69079696 original size:49 final size:49
Alignment explanation
Indices: 69079529--69079749 Score: 253
Period size: 49 Copynumber: 4.4 Consensus size: 49
69079519 GTCGCATGTA
* * ** * *
69079529 TAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTG
* * *** *
69079580 TAGTACTAAGTGCAGGCTACTACGTGTATCAGACGGTTAGGTCATGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACGTGTG
*
69079630 TAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTG
* * * *
69079679 TAGTACTAAGTGCAGGCTACTACGTGTATCGGATAAGTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTG
*
69079728 TAGTACTATGTGCAGGCTACTA
1 TAGTACTAAGTGCAGGCTACTA
69079750 TGCGTACCAG
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
49 76 0.52
50 42 0.29
51 28 0.19
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTG
Found at i:69084726 original size:38 final size:38
Alignment explanation
Indices: 69084667--69084744 Score: 122
Period size: 38 Copynumber: 2.1 Consensus size: 38
69084657 GGGACGTTAG
69084667 CATCGACTTATGATTTACGTGTAAGACCATGTCTGGGA
1 CATCGACTTATGATTTACGTGTAAGACCATGTCTGGGA
* *
69084705 CATCGACATTTTGATTT-CGTGTAAGACCCTGTCTGGGA
1 CATCGAC-TTATGATTTACGTGTAAGACCATGTCTGGGA
69084743 CA
1 CA
69084745 ATGGCATCGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 29 0.78
39 8 0.22
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (38 bp):
CATCGACTTATGATTTACGTGTAAGACCATGTCTGGGA
Found at i:69084771 original size:43 final size:38
Alignment explanation
Indices: 69084667--69084786 Score: 116
Period size: 38 Copynumber: 3.0 Consensus size: 38
69084657 GGGACGTTAG
*
69084667 CATCGAC-TTATGATTTACGTGTAAGACCATGTCTGGGA
1 CATCGACATTTTGA-TTACGTGTAAGACCATGTCTGGGA
* *
69084705 CATCGACATTTTGATTTCGTGTAAGACCCTGTCTGGGA
1 CATCGACATTTTGATTACGTGTAAGACCATGTCTGGGA
* * **
69084743 CAATGGCATCGATATTTGATTACATGTAAGACCACATCTGGGA
1 C-ATCG-A-C-AT-TTTGATTACGTGTAAGACCATGTCTGGGA
69084786 C
1 C
69084787 GTTGGCATTG
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
38 30 0.45
39 8 0.12
40 1 0.01
41 1 0.01
42 2 0.03
43 25 0.37
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (38 bp):
CATCGACATTTTGATTACGTGTAAGACCATGTCTGGGA
Found at i:69084793 original size:43 final size:42
Alignment explanation
Indices: 69084641--69084794 Score: 129
Period size: 43 Copynumber: 3.7 Consensus size: 42
69084631 ACGTGTTTTT
* * * *
69084641 GTGTAACACCACATCTGGGACGTTAGCATCGACTTATGATTTAC
1 GTGTAAGACCACATCTGGGACGATGGCATCGA-TTTTGA-TTAC
** * *
69084685 GTGTAAGACCATGTCTGGGAC-ATCG-A-C-ATTTTGATTTC
1 GTGTAAGACCACATCTGGGACGATGGCATCGATTTTGATTAC
* *
69084723 GTGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-ATCTGGGACGATGGCATCGAT-TTTGATTAC
* *
69084766 ATGTAAGACCACATCTGGGACGTTGGCAT
1 GTGTAAGACCACATCTGGGACGATGGCAT
69084795 TGTACGATCT
Statistics
Matches: 89, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
38 22 0.25
39 8 0.09
40 2 0.02
41 2 0.02
42 3 0.03
43 33 0.37
44 19 0.21
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACATCTGGGACGATGGCATCGATTTTGATTAC
Found at i:69089715 original size:39 final size:39
Alignment explanation
Indices: 69089619--69089806 Score: 166
Period size: 40 Copynumber: 4.7 Consensus size: 39
69089609 ATGATGTTCA
* * * *
69089619 GGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGA-GTTACTA-AACCG
* * *
69089659 GACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAATCCG
1 GGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA-CCG
* *
69089699 GGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAACCCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA-CCG
* *
69089738 GGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAACCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AACCG
** * *
69089778 GGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGT
69089807 CGTTATATCC
Statistics
Matches: 120, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAACCG
Found at i:69089830 original size:79 final size:79
Alignment explanation
Indices: 69089667--69089832 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
69089657 CGGACTAGGA
* * *
69089667 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
69089732 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * **
69089746 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
69089810 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
69089825 TCCGAAGG
1 TCCGAAGG
69089833 TACGTGATTC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 45 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:69095923 original size:44 final size:42
Alignment explanation
Indices: 69095849--69095950 Score: 105
Period size: 44 Copynumber: 2.4 Consensus size: 42
69095839 TATGGGTTTT
* **
69095849 CGTGTAAGACCACGTCTGGAAGGTTAGCATCAATATTGAGATTA
1 CGTGTAAGACCATGTCTGGAACATTAGCATC-ATATT-AGATTA
* * * * *
69095893 CGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT
1 CGTGTAAGACCATGTCTGGAACATTAGCATCATATTAGATTA
*
69095935 CGTGTAAGACCCTGTC
1 CGTGTAAGACCATGTC
69095951 ACGAGCTTTC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 19 0.39
43 4 0.08
44 26 0.53
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGAACATTAGCATCATATTAGATTA
Found at i:69098436 original size:40 final size:40
Alignment explanation
Indices: 69098392--69098536 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
69098382 CTTGCTCAAT
*
69098392 TGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
*
69098432 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
* * *
69098472 TGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAA
* *
69098512 CGCCTTCGGGACTTAGCCCGATTAT
1 TGCCTTCGGGACTTAGCCCGGTTAT
69098537 CATCCGAATA
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 93 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
Found at i:69098487 original size:80 final size:80
Alignment explanation
Indices: 69098355--69098531 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 80
69098345 AAACCAAGTA
* * * * * * *
69098355 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAATTGCCTTTGGGACTTAGCCCGG-TTATA
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
* *
69098418 GTAACTCGCACAAATG
65 GTAACTAGCACAAACG
69098434 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
*
69098498 GTCACTAGCACAAACG
65 GTAACTAGCACAAACG
69098514 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
69098532 ATTATCATCC
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 13 0.15
80 71 0.84
81 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTAGCACAAACG
Found at i:69106778 original size:40 final size:40
Alignment explanation
Indices: 69106708--69106885 Score: 297
Period size: 40 Copynumber: 4.5 Consensus size: 40
69106698 AACCCAAGTA
* *
69106708 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
69106747 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69106787 CCTTCGGGACTTAGCCCGGATATCGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69106827 CCTTCGGGATTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69106867 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69106886 TTATCATCCG
Statistics
Matches: 131, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.11
40 117 0.89
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69116334 original size:40 final size:40
Alignment explanation
Indices: 69116168--69116335 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
69116158 CATTTGAATG
* * *
69116168 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
69116208 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
69116248 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
69116288 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
69116328 GTATCCGG
1 ATATCCGG
69116336 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:69118105 original size:40 final size:40
Alignment explanation
Indices: 69118022--69118199 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
69118012 AACCCAAGTA
* * * * *
69118022 CCTTCAGGATTTAG-CCGGCTATAGCT-ACTCGCTCAAACG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
69118061 CCTTCGGGACTTAGCCCGGATAAAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69118101 CCTTCGGGACTTAGCCCGGATATCGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69118141 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69118181 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69118200 TTATCATCCG
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.10
40 111 0.90
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69120754 original size:15 final size:16
Alignment explanation
Indices: 69120736--69120765 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
69120726 ATAAAAATAA
69120736 TGATGATA-ATAAAAG
1 TGATGATATATAAAAG
69120751 TGATGATATATAAAA
1 TGATGATATATAAAA
69120766 AAAATGTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.30
Consensus pattern (16 bp):
TGATGATATATAAAAG
Found at i:69129071 original size:39 final size:39
Alignment explanation
Indices: 69128940--69129130 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
69128930 GGATATAACG
* ** **
69128940 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
69128980 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
69129020 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
69129058 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
69129098 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
69129131 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:69129075 original size:78 final size:80
Alignment explanation
Indices: 69128980--69129130 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
69128970 GGTTATAGCG
* * * *
69128980 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
69129042 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
69129058 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
69129123 AGCCCGGA
66 AGCCCGGA
69129131 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:69137096 original size:39 final size:39
Alignment explanation
Indices: 69136965--69137155 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
69136955 GGATATAACG
* ** **
69136965 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
69137005 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
69137045 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
69137083 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
69137123 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
69137156 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:69137100 original size:78 final size:80
Alignment explanation
Indices: 69137005--69137155 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
69136995 GGTTATAGCG
* * * *
69137005 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
69137067 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
69137083 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
69137148 AGCCCGGA
66 AGCCCGGA
69137156 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:69140149 original size:29 final size:30
Alignment explanation
Indices: 69140092--69140149 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
69140082 TGGAAGGGGA
* * *
69140092 GTAAAAGTTTTGGAGGGAAAGTGAGAAGGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
69140122 GTAAAAGTTTT-GAAGGAAAGTAAAAAGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGG
69140150 TTTGAGAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (30 bp):
GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
Found at i:69140296 original size:9 final size:9
Alignment explanation
Indices: 69140277--69140309 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
69140267 ATTTGAGTTG
69140277 ACTCGAATA
1 ACTCGAATA
69140286 ACTC-AATTA
1 ACTCGAA-TA
69140295 ACTCGAATA
1 ACTCGAATA
69140304 ACTCGA
1 ACTCGA
69140310 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 18 0.82
10 2 0.09
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:69141019 original size:66 final size:63
Alignment explanation
Indices: 69140881--69141020 Score: 172
Period size: 66 Copynumber: 2.1 Consensus size: 63
69140871 GTATACTCTA
* * *
69140881 CACGGCCTCACACACGGGCGTGTGACTGGCCGTGTGGCACAAGTCAGTATACCCTCTGAATGG
1 CACGGCCTAACACACGGGCGTGTGACTGGCCGTGTGGCACAACTCAGTATACCCTATGAATGG
* * * *
69140944 CACATGGCCTAACACACGGGCGTGTGACTTGGCCGTGTTGCATAACTTAGTATACCCTATAGGAT
1 CAC--GGCCTAACACACGGGCGTGTGAC-TGGCCGTGTGGCACAACTCAGTATACCCTAT--GAA
69141009 TGG
61 TGG
69141012 CACGGCCTA
1 CACGGCCTA
69141021 GTACACGGCC
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
63 3 0.05
65 22 0.34
66 32 0.49
68 8 0.12
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (63 bp):
CACGGCCTAACACACGGGCGTGTGACTGGCCGTGTGGCACAACTCAGTATACCCTATGAATGG
Found at i:69146712 original size:42 final size:43
Alignment explanation
Indices: 69146642--69146752 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 43
69146632 CGCATCCATT
*
69146642 ATGAACTC-GAACCACTCAACAAGCTCAGATGC-CACAGATATC
1 ATGAACTCAG-ACCACTCAAAAAGCTCAGATGCTCACAGATATC
* * * * *
69146684 ATGAACTTAGACCACTTAAAAAGTTCAGATTCTCACATATATC
1 ATGAACTCAGACCACTCAAAAAGCTCAGATGCTCACAGATATC
* *
69146727 ATGAACTCAGACCGCTCAACAAGCTC
1 ATGAACTCAGACCACTCAAAAAGCTC
69146753 GGATTTCTTA
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 25 0.45
43 31 0.55
ACGTcount: A:0.38, C:0.28, G:0.13, T:0.22
Consensus pattern (43 bp):
ATGAACTCAGACCACTCAAAAAGCTCAGATGCTCACAGATATC
Found at i:69157900 original size:38 final size:39
Alignment explanation
Indices: 69157832--69157979 Score: 226
Period size: 39 Copynumber: 3.8 Consensus size: 39
69157822 AATGTTCGAG
*
69157832 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGCTA
69157871 TGATATCCGGGCTAAG-CCGAAGGCAATTGTACGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGCTA
* * *
69157909 TGATACCCGGGCTAAGCCCGAAGGCAATTGTACGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGCTA
* *
69157948 TGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGT
69157980 GCGGGTTACC
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 36 0.36
39 50 0.50
40 14 0.14
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGCTA
Found at i:69157928 original size:77 final size:78
Alignment explanation
Indices: 69157832--69157979 Score: 226
Period size: 77 Copynumber: 1.9 Consensus size: 78
69157822 AATGTTCGAG
* *
69157832 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCGAAGGCA
1 TGATACCCGGGCTAAGCCCGAAGGCAATTGTACGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
69157896 ATTGTACGAGCTA
66 ATTGTACGAGCTA
* * *
69157909 TGATACCCGGGCTAAGCCCGAAGGCAATTGTACGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATACCCGGGCTAAGCCCGAAGGCAATTGTACGAGCTATGATATCCGGGCTAAG-CCCGAAGGC
*
69157974 ATTTGT
65 AATTGT
69157980 GCGGGTTACC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
77 50 0.79
79 13 0.21
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (78 bp):
TGATACCCGGGCTAAGCCCGAAGGCAATTGTACGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
ATTGTACGAGCTA
Found at i:69165482 original size:20 final size:21
Alignment explanation
Indices: 69165459--69165504 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
69165449 AGCTCCAATC
69165459 AGCTCACTTGAGCTTG-ATTT
1 AGCTCACTTGAGCTTGAATTT
**
69165479 AGCTCGTTTGAGCTTGAATTT
1 AGCTCACTTGAGCTTGAATTT
69165500 AGCTC
1 AGCTC
69165505 GTTTCAGCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (21 bp):
AGCTCACTTGAGCTTGAATTT
Found at i:69165501 original size:21 final size:20
Alignment explanation
Indices: 69165466--69165513 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 20
69165456 ATCAGCTCAC
69165466 TTGAGCTTGATTTAGCTCGT
1 TTGAGCTTGATTTAGCTCGT
69165486 TTGAGCTTGAATTTAGCTCGT
1 TTGAGCTTG-ATTTAGCTCGT
*
69165507 TTCAGCT
1 TTGAGCT
69165514 CATTTCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.44
Consensus pattern (20 bp):
TTGAGCTTGATTTAGCTCGT
Found at i:69165737 original size:13 final size:13
Alignment explanation
Indices: 69165719--69165751 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
69165709 ATTATATGAA
69165719 TAATTATTTTATT
1 TAATTATTTTATT
69165732 TAATTATTTTATT
1 TAATTATTTTATT
69165745 TAATTAT
1 TAATTAT
69165752 GTAGGTTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TAATTATTTTATT
Found at i:69167526 original size:15 final size:16
Alignment explanation
Indices: 69167506--69167535 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
69167496 AGAATATATC
69167506 TTCTTTTT-CTTTTTT
1 TTCTTTTTCCTTTTTT
69167521 TTCTTTTTCCTTTTT
1 TTCTTTTTCCTTTTT
69167536 GATTTTCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
TTCTTTTTCCTTTTTT
Found at i:69171380 original size:3 final size:3
Alignment explanation
Indices: 69171372--69171404 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
69171362 GCAGCCTTGT
69171372 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
69171405 CTCTCTCTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:69174701 original size:29 final size:28
Alignment explanation
Indices: 69174664--69174720 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
69174654 TGAACTGTTG
* *
69174664 AAGGGAGTTCCTAACCTTGGAACTCGTCA
1 AAGGAAGTTCCTAACCTTAG-ACTCGTCA
69174693 AAGGAAGTTCCTAACCTTAGACTCGTCA
1 AAGGAAGTTCCTAACCTTAGACTCGTCA
69174721 GGAAGGGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (28 bp):
AAGGAAGTTCCTAACCTTAGACTCGTCA
Found at i:69179656 original size:68 final size:68
Alignment explanation
Indices: 69179583--69179721 Score: 260
Period size: 68 Copynumber: 2.0 Consensus size: 68
69179573 ATTATCTTTT
* *
69179583 TTTTTATTATTTGTTTTATCATAAGTAGCACCAAAGAGATATATGTAGAGTTTGCTAAAATTTAT
1 TTTTTATTATTTCTTTTATCATAAGTAGCACCAAAGAGATATAAGTAGAGTTTGCTAAAATTTAT
69179648 GCG
66 GCG
69179651 TTTTTATTATTTCTTTTATCATAAGTAGCACCAAAGAGATATAAGTAGAGTTTGCTAAAATTTAT
1 TTTTTATTATTTCTTTTATCATAAGTAGCACCAAAGAGATATAAGTAGAGTTTGCTAAAATTTAT
69179716 GCG
66 GCG
69179719 TTT
1 TTT
69179722 CTATGATATA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.43
Consensus pattern (68 bp):
TTTTTATTATTTCTTTTATCATAAGTAGCACCAAAGAGATATAAGTAGAGTTTGCTAAAATTTAT
GCG
Found at i:69181524 original size:30 final size:29
Alignment explanation
Indices: 69181475--69181547 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 29
69181465 ATTTCATTTC
* *
69181475 AAATATGGGCTTATCTGGATACAAATCAA
1 AAATAAGGGTTTATCTGGATACAAATCAA
* *
69181504 AGAATAAGGGTTTATTTGGATACAAATTAA
1 A-AATAAGGGTTTATCTGGATACAAATCAA
*
69181534 AATATAAGGCTTTA
1 AA-ATAAGGGTTTA
69181548 AGAAAACTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 2 0.05
30 35 0.95
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (29 bp):
AAATAAGGGTTTATCTGGATACAAATCAA
Found at i:69182876 original size:18 final size:17
Alignment explanation
Indices: 69182853--69182891 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
69182843 TTCCTTTTTC
69182853 TTTTT-CTTTTTTGATTAT
1 TTTTTCCTTTTTT-ATT-T
69182871 TTTTTCCTTTTTTATTT
1 TTTTTCCTTTTTTATTT
69182888 TTTT
1 TTTT
69182892 ACTTCAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 8 0.40
19 7 0.35
ACGTcount: A:0.08, C:0.08, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTCCTTTTTTATTT
Found at i:69183723 original size:73 final size:73
Alignment explanation
Indices: 69183604--69183743 Score: 244
Period size: 73 Copynumber: 1.9 Consensus size: 73
69183594 CGAAAATTTC
* * *
69183604 TCCGAAATTTGGAAATTTGAGTCATTCCTTGAAGTAAAACTAAGATGTATTCTTAGAATAGTTTT
1 TCCGAAATTTAGAAATTTGAGTCATTCCGTGAAGTAAAACTAAGATGTATTCTTAGAAAAGTTTT
69183669 TGAGTTTT
66 TGAGTTTT
*
69183677 TCCGAAATTTAGAAATTTGAGTCATTCCGTGAAGTAAAACTAAGATGTATTCTTGGAAAAGTTTT
1 TCCGAAATTTAGAAATTTGAGTCATTCCGTGAAGTAAAACTAAGATGTATTCTTAGAAAAGTTTT
69183742 TG
66 TG
69183744 GGTTATTCTT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 63 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (73 bp):
TCCGAAATTTAGAAATTTGAGTCATTCCGTGAAGTAAAACTAAGATGTATTCTTAGAAAAGTTTT
TGAGTTTT
Found at i:69188084 original size:28 final size:28
Alignment explanation
Indices: 69188036--69188126 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
69188026 GTGACAGAGT
*
69188036 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
69188065 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
69188093 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
69188121 CACCAG
1 CACCAG
69188127 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:69188279 original size:28 final size:28
Alignment explanation
Indices: 69188232--69188296 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
69188222 AAATTAACCC
*
69188232 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
69188260 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
69188288 TAGGGGTAT
1 TAGGGGTAT
69188297 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:69195949 original size:28 final size:28
Alignment explanation
Indices: 69195901--69195979 Score: 131
Period size: 28 Copynumber: 2.8 Consensus size: 28
69195891 GTGACAGAGT
* *
69195901 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGGGC
69195930 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGGGC
69195958 CACCAGAACAGATAATTTGTGG
1 CACCAGAACAGATAATTTGTGG
69195980 ATAGCCACCA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
28 41 0.85
29 7 0.15
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGGGC
Found at i:69196143 original size:28 final size:28
Alignment explanation
Indices: 69196096--69196160 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
69196086 AAATTAACCC
*
69196096 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
69196124 TAGGGGTATAATGGTAATTTCGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
*
69196152 TAGGAGTAT
1 TAGGGGTAT
69196161 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:69198647 original size:39 final size:40
Alignment explanation
Indices: 69198547--69198728 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
69198537 TCGAATGATG
* * *
69198547 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
69198587 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
69198627 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
69198665 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
69198706 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
69198729 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:69198692 original size:78 final size:80
Alignment explanation
Indices: 69198547--69198728 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
69198537 TCGAATGATG
* * * *
69198547 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
69198612 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
69198627 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
69198689 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
69198706 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
69198729 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:69205539 original size:40 final size:40
Alignment explanation
Indices: 69205480--69205686 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
69205470 CAATTGAATG
* * * * *
69205480 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * **
69205520 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGACCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-AGTT
* * *
69205560 -CATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
69205599 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
69205639 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
69205679 ATATCCGG
1 ATATCCGG
69205687 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 32 0.23
40 108 0.77
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:69205617 original size:79 final size:80
Alignment explanation
Indices: 69205481--69205686 Score: 254
Period size: 79 Copynumber: 2.6 Consensus size: 80
69205471 AATTGAATGA
* * ** * * *
69205481 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA-
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
*
69205545 TTGTGCTAGT-GACC
66 TTGTGCAAGTCGACC
* * *
69205559 TCATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCA
1 T-ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
**
69205624 TTTGTGCAAGTCGTTC
65 TTTGTGCAAGTCGACC
* *
69205640 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
69205687 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
78 1 0.01
79 53 0.49
80 52 0.48
81 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTCGACC
Found at i:69212135 original size:40 final size:39
Alignment explanation
Indices: 69212069--69212219 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
69212059 AAATTGAATG
* * *
69212069 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
69212108 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
69212148 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
69212188 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
69212220 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:69212233 original size:40 final size:39
Alignment explanation
Indices: 69212106--69212235 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
69212096 ATGCTGGAAA
* *
69212106 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
69212146 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
69212186 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
69212226 TTATATCCGG
1 TTATATCCGG
69212236 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:69217397 original size:46 final size:46
Alignment explanation
Indices: 69217330--69217504 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
69217320 TGTAACCCGC
69217330 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
69217376 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * *
69217426 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
** *
69217469 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
69217505 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 62 0.58
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:69217449 original size:93 final size:93
Alignment explanation
Indices: 69217337--69217508 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69217327 CGCCCATAAG
* * * *
69217337 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
69217402 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
69217430 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
69217495 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
69217509 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:69222518 original size:48 final size:48
Alignment explanation
Indices: 69222397--69222571 Score: 226
Period size: 48 Copynumber: 3.6 Consensus size: 48
69222387 ATGAGATCTC
** * * * * *
69222397 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAGATGAGAT-CCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACGT-TGATATGTG-TGCTA
*
69222446 ATGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCTA
* *
69222494 GTGTAAGACCATGTCTGCGACATGGCATCGACGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCTA
*
69222542 GTGTAAGACCATGTTTGGGACATGGCATCA
1 GTGTAAGACCATGTCTGGGACATGGCATCA
69222572 GCACCAATAT
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 80 0.72
49 30 0.27
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCTA
Found at i:69222582 original size:48 final size:48
Alignment explanation
Indices: 69222397--69222664 Score: 206
Period size: 48 Copynumber: 5.6 Consensus size: 48
69222387 ATGAGATCTC
* * * *
69222397 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAGATGAGAT-CCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCA-CCGATATGTG-TGCTA
* * ***
69222446 ATGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCACCGATATGTGTGCTA
* *
69222494 GTGTAAGACCATGTCTGCGACATGGCATC-G-ACGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCAC--CGATATGTGTGCTA
* * **
69222542 GTGTAAGACCATGTTTGGGACATGGCATCAGCACCAATATGTGAT-CCC
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCACCGATATGTG-TGCTA
* * * * * * * * *
69222590 GTATAAGACCATAT-TAGGGATATGGCTTCAGCATCGTTACGTGAT-TTC
1 GTGTAAGACCATGTCT-GGGACATGGCATCAGCACCGATATGTG-TGCTA
*
69222638 GTATAAGACCATGTCTGGGACATGGCA
1 GTGTAAGACCATGTCTGGGACATGGCA
69222665 CCGATATGAG
Statistics
Matches: 178, Mismatches: 33, Indels: 17
0.78 0.14 0.07
Matches are distributed among these distances:
47 2 0.01
48 142 0.80
49 32 0.18
50 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCACCGATATGTGTGCTA
Found at i:69222761 original size:89 final size:90
Alignment explanation
Indices: 69222588--69222753 Score: 210
Period size: 89 Copynumber: 1.9 Consensus size: 90
69222578 ATATGTGATC
* * * * **
69222588 CCGTATAAGACCATATTAGGGATATGGCTTCAGCATCGTTACGTGATTTCGTATAAGACCATGTC
1 CCGTATAAGACCATATTAGGGATATGGCATCAGCACCGTTACGAGACTTCGTATAAGACCATAAC
*
69222653 TGGGACATGGCACCGATATGAGGCT
66 TAGGACATGGCACCGATATGAGGCT
* * *
69222678 CCGTATAAGA-CATGTCT-GGGATATGGCATCAGTACCGTTATGAGACTTCGTATAAGACCATAA
1 CCGTATAAGACCATAT-TAGGGATATGGCATCAGCACCGTTACGAGACTTCGTATAAGACCATAA
*
69222741 CTAGGATATGGCA
65 CTAGGACATGGCA
69222754 TTGATATGCA
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
89 53 0.83
90 11 0.17
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (90 bp):
CCGTATAAGACCATATTAGGGATATGGCATCAGCACCGTTACGAGACTTCGTATAAGACCATAAC
TAGGACATGGCACCGATATGAGGCT
Found at i:69222776 original size:89 final size:90
Alignment explanation
Indices: 69222591--69222794 Score: 205
Period size: 89 Copynumber: 2.3 Consensus size: 90
69222581 TGTGATCCCG
* * * * * * * ** *
69222591 TATAAGACCATATTAGGGATATGGCTTCAGCATCGTTACGTGATTTCGTATAAGACCATGTCTGG
1 TATAAGACAATGTCAGGGATATGGCATCAGCACCGTTACGAGACTTCGTATAAGACCATAACTAG
* *
69222656 GACATGGCACCGATATGAGGCTCCG
66 GACATGGCACCGATATGAGACTCCA
* * *
69222681 TATAAGAC-ATGTCTGGGATATGGCATCAGTACCGTTATGAGACTTCGTATAAGACCATAACTAG
1 TATAAGACAATGTCAGGGATATGGCATCAGCACCGTTACGAGACTTCGTATAAGACCATAACTAG
* **
69222745 GATATGGCATTGATATGCAGAC-CCA
66 GACATGGCACCGATATG-AGACTCCA
* *
69222770 TGTAAGACAATGTCAGGGACATGGC
1 TATAAGACAATGTCAGGGATATGGC
69222795 TTTGGCACTC
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
89 67 0.73
90 25 0.27
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (90 bp):
TATAAGACAATGTCAGGGATATGGCATCAGCACCGTTACGAGACTTCGTATAAGACCATAACTAG
GACATGGCACCGATATGAGACTCCA
Found at i:69224984 original size:50 final size:50
Alignment explanation
Indices: 69224821--69225229 Score: 330
Period size: 50 Copynumber: 8.4 Consensus size: 50
69224811 TGTGTGCTAA
* ** *
69224821 TGTAAGA-CATGTCTGGGACAT-GCATCAACAAC-A-TTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATATGAGAGCCAG
* * * * * * *
69224867 TGTAAGACCATGTCTGGGACATAGCATCGGCATTGAG--ACGAGAACTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATATGAGAGCCAG
* * *
69224915 TGTAAGGCCATGTCTGGGACATGGCATCGACCTCGAGATATGAAAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATATGAGAGCCAG
* * * * *
69224965 TTTAAGACCATGTCTGGGACATGGCATCG-GCT--TGATAT--GTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATATGAGAGCCAG
* * **
69225010 TGTAAGACCATGTCTGGGACATGGCATCGACAC-CAACAGGTGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGAGATATGAGAGCCAG
* * *
69225060 TGTAAGACTATGTCTGGGACATGGCATCGGTA-C-CGACAGATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-G-ACCTCGAGATATGAGAGCCAG
** * * * *
69225110 TGTAAGACCATGTCTGGGACATGGTGTC-AGCCACAATATATGAGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CCTCGAGATATGAGAGCCAG
* ** * *
69225160 TGTAAGACCATGTCTGGGACATGGCATC-AACT-TTGATGTGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATATGAGAGCCAG
69225208 TGTAAGACCATGTCTGGGACAT
1 TGTAAGACCATGTCTGGGACAT
69225230 AGCGTCGGCA
Statistics
Matches: 295, Mismatches: 51, Indels: 32
0.78 0.13 0.08
Matches are distributed among these distances:
45 31 0.11
46 7 0.02
47 21 0.07
48 81 0.27
49 5 0.02
50 148 0.50
51 1 0.00
52 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATATGAGAGCCAG
Found at i:69225026 original size:95 final size:95
Alignment explanation
Indices: 69224821--69225229 Score: 407
Period size: 95 Copynumber: 4.2 Consensus size: 95
69224811 TGTGTGCTAA
* * *
69224821 TGTAAGA-CATGTCTGGGACAT-GCATCAACAAC-ATTATGAGAGCCAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCACAAATATGAGAGCCAGTGTAAGACCATGTCTG
* * *
69224883 GGACATAGCATCGGCATTGAGACGAGAACTAG
66 GGACATGGCATCGGCATTGAGATGAG--CCAG
* * * * * *
69224915 TGTAAGGCCATGTCTGGGACATGGCATCGACCTCGAGATATGAAAGCTAGTTTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATCGACCAC-AAATATGAGAGCCAGTGTAAGACCATGTCT
* * *
69224980 GGGACATGGCATCGGC-TTGATATGTGTCAG
65 GGGACATGGCATCGGCATTGAGATGAGCCAG
** *
69225010 TGTAAGACCATGTCTGGGACATGGCATCGA-CACCAACAGGTGAGAGCCAGTGTAAGACTATGTC
1 TGTAAGACCATGTCTGGGACATGGCATCGACCA-CAA-ATATGAGAGCCAGTGTAAGACCATGTC
* **
69225074 TGGGACATGGCATCGGTACCGACAGATGAGAGCCAG
64 TGGGACATGGCATCGGCATTG--AGAT--GAGCCAG
** *
69225110 TGTAAGACCATGTCTGGGACATGGTGTC-AGCCACAATATATGAGAGTCAGTGTAAGACCATGTC
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CCACAA-ATATGAGAGCCAGTGTAAGACCATGTC
** * *
69225174 TGGGACATGGCATCAACTTTGATGTGTGAGCCAG
64 TGGGACATGGCATCGGCATTGA-G-ATGAGCCAG
69225208 TGTAAGACCATGTCTGGGACAT
1 TGTAAGACCATGTCTGGGACAT
69225230 AGCGTCGGCA
Statistics
Matches: 256, Mismatches: 44, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
94 8 0.03
95 83 0.32
96 9 0.04
97 7 0.03
98 72 0.28
99 2 0.01
100 73 0.29
101 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACCACAAATATGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCATTGAGATGAGCCAG
Found at i:69231680 original size:19 final size:20
Alignment explanation
Indices: 69231656--69231693 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69231646 GGTACCACCA
69231656 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
69231675 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
69231694 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:69231989 original size:46 final size:45
Alignment explanation
Indices: 69231922--69232087 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
69231912 CGCCCCTAAG
*
69231922 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* * *
69231968 TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * *
69232015 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
*
69232061 TGAACTCGGACTCAACTCAATGAGTTC
1 TGAACTCGGACTCAACTCAACGAGTTC
69232088 AGATGCTCAA
Statistics
Matches: 99, Mismatches: 13, Indels: 16
0.77 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 52 0.53
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:69232033 original size:93 final size:93
Alignment explanation
Indices: 69231923--69232093 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
69231913 GCCCCTAAGT
* *
69231923 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
69231988 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
69232016 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
69232081 TGAGTTCAGATGC
66 CGAGTTCAGATGC
69232094 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:69237303 original size:30 final size:31
Alignment explanation
Indices: 69237266--69237464 Score: 128
Period size: 30 Copynumber: 6.6 Consensus size: 31
69237256 TTGATAGCCG
* * *
69237266 AAGCCATCCCTTTTCATAATTCAATGGTCAT
1 AAGCCATCCATTTTCATAATTCGATAGTCAT
* * *
69237297 CA-CCATCTATTTTCATAA-TCTGATAGCCA-
1 AAGCCATCCATTTTCATAATTC-GATAGTCAT
*
69237326 AAGCTATCCATTTTCATAATTCGATAG-C-T
1 AAGCCATCCATTTTCATAATTCGATAGTCAT
* * *
69237355 GAAGCCATCCTTTTTCATAATTCTATAGCCA-
1 -AAGCCATCCATTTTCATAATTCGATAGTCAT
* * *
69237386 AAGCCATCCCTTTTCATAATTCGGTGGTCAT
1 AAGCCATCCATTTTCATAATTCGATAGTCAT
* * * ** *
69237417 CA-CCATCCCTTTTTATTGTT-GATGGTCAT
1 AAGCCATCCATTTTCATAATTCGATAGTCAT
* *
69237446 CA-TCATCCATTTTCATAAT
1 AAGCCATCCATTTTCATAAT
69237465 AGCATAATTC
Statistics
Matches: 133, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
29 26 0.20
30 102 0.77
31 5 0.04
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (31 bp):
AAGCCATCCATTTTCATAATTCGATAGTCAT
Found at i:69237393 original size:90 final size:90
Alignment explanation
Indices: 69237229--69237405 Score: 212
Period size: 90 Copynumber: 2.0 Consensus size: 90
69237219 TCATAGTTCA
* * ** * * *
69237229 ATAGCCGAAGCTATCCCTTTCCATGTTTTGATAGCCGAAGCCATCCCTTTTCATAATTCAATGGT
1 ATAGCCAAAGCTATCCATTTCCATAATTCGATAGCCGAAGCCATCCCTTTTCATAATTCAATAGC
* *
69237294 CATCACCATCTATTTTCATAATCTG
66 CATAACCATCCATTTTCATAATCTG
* * * *
69237319 ATAGCCAAAGCTATCCATTTTCATAATTCGATAGCTGAAGCCATCCTTTTTCATAATTCTATAGC
1 ATAGCCAAAGCTATCCATTTCCATAATTCGATAGCCGAAGCCATCCCTTTTCATAATTCAATAGC
*
69237384 CA-AAGCCATCCCTTTTCATAAT
66 CATAA-CCATCCATTTTCATAAT
69237406 TCGGTGGTCA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
89 1 0.01
90 71 0.99
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (90 bp):
ATAGCCAAAGCTATCCATTTCCATAATTCGATAGCCGAAGCCATCCCTTTTCATAATTCAATAGC
CATAACCATCCATTTTCATAATCTG
Found at i:69237408 original size:60 final size:61
Alignment explanation
Indices: 69237213--69237407 Score: 204
Period size: 60 Copynumber: 3.2 Consensus size: 61
69237203 TTGTTACCAC
* * * * * * * *
69237213 CCCTTTTCATAGTTCAATAGCCGAAGCTATCCCTTTCCAT-GTTTTGATAGCCGAAGCCAT
1 CCCTTTTCATAATTCAATAGCTGAAGCCATCCTTTTTCATAATTCTGATAGCCAAAGCCAT
* * *
69237273 CCCTTTTCATAATTCAATGGTCAT-CA-CCAT-CTATTTTCATAA-TCTGATAGCCAAAGCTAT
1 CCCTTTTCATAATTCAATAG-C-TGAAGCCATCCT-TTTTCATAATTCTGATAGCCAAAGCCAT
* *
69237333 CCATTTTCATAATTCGATAGCTGAAGCCATCCTTTTTCATAATTCT-ATAGCCAAAGCCAT
1 CCCTTTTCATAATTCAATAGCTGAAGCCATCCTTTTTCATAATTCTGATAGCCAAAGCCAT
69237393 CCCTTTTCATAATTC
1 CCCTTTTCATAATTC
69237408 GGTGGTCATC
Statistics
Matches: 110, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
58 1 0.01
59 3 0.03
60 99 0.90
61 7 0.06
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.36
Consensus pattern (61 bp):
CCCTTTTCATAATTCAATAGCTGAAGCCATCCTTTTTCATAATTCTGATAGCCAAAGCCAT
Found at i:69237423 original size:60 final size:60
Alignment explanation
Indices: 69237257--69237430 Score: 212
Period size: 60 Copynumber: 2.9 Consensus size: 60
69237247 TTCCATGTTT
* *
69237257 TGATAGCCGAAGCCATCCCTTTTCATAATTCAATGGTCATCACCAT-CTATTTTCATAATC
1 TGATAGCCAAAGCCATCCCTTTTCATAATTCGATGGTCATCACCATCCT-TTTTCATAATC
* * * *
69237317 TGATAGCCAAAGCTATCCATTTTCATAATTCGATAG-C-TGAAGCCATCCTTTTTCATAATTC
1 TGATAGCCAAAGCCATCCCTTTTCATAATTCGATGGTCAT-CA-CCATCCTTTTTCATAA-TC
*
69237378 T-ATAGCCAAAGCCATCCCTTTTCATAATTCGGTGGTCATCACCATCCCTTTTT
1 TGATAGCCAAAGCCATCCCTTTTCATAATTCGATGGTCATCACCAT-CCTTTTT
69237431 ATTGTTGATG
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
58 1 0.01
59 2 0.02
60 78 0.81
61 14 0.15
62 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.11, T:0.36
Consensus pattern (60 bp):
TGATAGCCAAAGCCATCCCTTTTCATAATTCGATGGTCATCACCATCCTTTTTCATAATC
Found at i:69241663 original size:26 final size:26
Alignment explanation
Indices: 69241627--69241680 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
69241617 CATAGTAGAA
69241627 ATAACAATAGGCAACCTTCTCAAACT
1 ATAACAATAGGCAACCTTCTCAAACT
*
69241653 ATAATAATAGGCAACCTTCTCAAACT
1 ATAACAATAGGCAACCTTCTCAAACT
69241679 AT
1 AT
69241681 CTCCGAAGCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (26 bp):
ATAACAATAGGCAACCTTCTCAAACT
Found at i:69242894 original size:16 final size:16
Alignment explanation
Indices: 69242873--69242905 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
69242863 CTGAAATCAA
69242873 TGTGTTCCACCACTAG
1 TGTGTTCCACCACTAG
69242889 TGTGTTCCACCACTAG
1 TGTGTTCCACCACTAG
69242905 T
1 T
69242906 AAGTTCAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.33
Consensus pattern (16 bp):
TGTGTTCCACCACTAG
Found at i:69242911 original size:16 final size:16
Alignment explanation
Indices: 69242876--69242911 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
69242866 AAATCAATGT
**
69242876 GTTCCACCACTAGTGT
1 GTTCCACCACTAGTAA
69242892 GTTCCACCACTAGTAA
1 GTTCCACCACTAGTAA
69242908 GTTC
1 GTTC
69242912 AGCCTCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.31
Consensus pattern (16 bp):
GTTCCACCACTAGTAA
Found at i:69244926 original size:30 final size:30
Alignment explanation
Indices: 69244877--69245118 Score: 121
Period size: 30 Copynumber: 8.1 Consensus size: 30
69244867 TTGTTACCAC
* * * * *
69244877 CCCTTTTCATAGTTCGATAGCCGAAGCTAT
1 CCCTTTCCATAATTTGATAGCCAAAGCCAT
** *
69244907 CCCTTTCCATGTTTTGATAGTCAAAGCCAT
1 CCCTTTCCATAATTTGATAGCCAAAGCCAT
* ***
69244937 CCCTTTTCATAATTTGATAGTCGTCA-CCAT
1 CCCTTTCCATAATTTGATAG-CCAAAGCCAT
** ** * **
69244967 AACTTTTTATAATTTGATA-CCTGAAGTTAT
1 CCCTTTCCATAATTTGATAGCC-AAAGCCAT
* * * * *
69244997 CCCTTTTCATAAATCGATAGTCGAAGCCAT
1 CCCTTTCCATAATTTGATAGCCAAAGCCAT
* * *
69245027 CCCTTTCCATAATTTTATATCCAGAGCCAT
1 CCCTTTCCATAATTTGATAGCCAAAGCCAT
* * * * *
69245057 CCCTATT-CATAATTCGGTGGTCGAAGCCAT
1 CCCT-TTCCATAATTTGATAGCCAAAGCCAT
* * *
69245087 CCCTTTCCATATTTTGATAGCCGAAGGCAT
1 CCCTTTCCATAATTTGATAGCCAAAGCCAT
69245117 CC
1 CC
69245119 TTTTTCATTG
Statistics
Matches: 154, Mismatches: 52, Indels: 12
0.71 0.24 0.06
Matches are distributed among these distances:
28 1 0.01
29 3 0.02
30 146 0.95
31 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (30 bp):
CCCTTTCCATAATTTGATAGCCAAAGCCAT
Found at i:69244956 original size:60 final size:59
Alignment explanation
Indices: 69244877--69245126 Score: 225
Period size: 60 Copynumber: 4.2 Consensus size: 59
69244867 TTGTTACCAC
* * * * *
69244877 CCCTTTTCATAGTTCGATAGCCGAAGCTATCCCTTTCCATGTTTTGATAGTCAAAGCCAT
1 CCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTCCATATTTTGATA-CCAAAGCCAT
* * ** ** * * **
69244937 CCCTTTTCATAATTTGATAGTCGTCA-CCATAACTTTTTATAATTTGATACCTGAAGTTAT
1 CCCTTTTCATAATTCGATAGTCG-AAGCCATCCCTTTCCATATTTTGATACC-AAAGCCAT
* *
69244997 CCCTTTTCATAAATCGATAGTCGAAGCCATCCCTTTCCATAATTTT-ATATCCAGAGCCAT
1 CCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTCCAT-ATTTTGATA-CCAAAGCCAT
* * * * *
69245057 CCCTATTCATAATTCGGTGGTCGAAGCCATCCCTTTCCATATTTTGATAGCCGAAGGCAT
1 CCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTCCATATTTTGATA-CCAAAGCCAT
*
69245117 CCTTTTTCAT
1 CCCTTTTCAT
69245127 TGGTTGATGA
Statistics
Matches: 147, Mismatches: 37, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
59 7 0.05
60 133 0.90
61 7 0.05
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (59 bp):
CCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTCCATATTTTGATACCAAAGCCAT
Found at i:69247159 original size:25 final size:26
Alignment explanation
Indices: 69247117--69247166 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
69247107 CTTTTTCTTT
*
69247117 TCTTTTCATTTTTAGATTAGGTTTTC
1 TCTTTTCATTTTTAGATTAGATTTTC
69247143 TCTTTTC-TTTTTAGATTAGATTTT
1 TCTTTTCATTTTTAGATTAGATTTT
69247167 ATTTTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.16, C:0.10, G:0.10, T:0.64
Consensus pattern (26 bp):
TCTTTTCATTTTTAGATTAGATTTTC
Found at i:69247173 original size:25 final size:26
Alignment explanation
Indices: 69247117--69247179 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 26
69247107 CTTTTTCTTT
* *
69247117 TCTTTTCATTTTTAGATTAGGTTTTC
1 TCTTTTCATTTTTAGATTAGATTTTA
69247143 TCTTTTC-TTTTTAGATTAGATTTTA
1 TCTTTTCATTTTTAGATTAGATTTTA
* *
69247168 TTTTTTTATTTT
1 TCTTTTCATTTT
69247180 CTTTCTTCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 21 0.66
26 11 0.34
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (26 bp):
TCTTTTCATTTTTAGATTAGATTTTA
Found at i:69249242 original size:31 final size:31
Alignment explanation
Indices: 69249204--69249267 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
69249194 CCTTTTCATA
69249204 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
**
69249235 TTTCATATTTCATGTTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
69249266 TT
1 TT
69249268 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:69249511 original size:24 final size:24
Alignment explanation
Indices: 69249459--69249578 Score: 188
Period size: 24 Copynumber: 5.0 Consensus size: 24
69249449 GCTTTATCAT
* *
69249459 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
69249484 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
69249508 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
69249532 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
69249556 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69249579 TCACTTCCTC
Statistics
Matches: 90, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
24 78 0.87
25 12 0.13
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:69249654 original size:20 final size:20
Alignment explanation
Indices: 69249629--69249688 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
69249619 TATGATTACC
69249629 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
69249649 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
69249669 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69249689 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69252038 original size:40 final size:39
Alignment explanation
Indices: 69251993--69252200 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 39
69251983 CGGAATACAA
*
69251993 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
69252033 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
69252073 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
*** *
69252113 CCGGATGA-GGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGAT-ATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
69252153 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
69252193 CCGGATAT
1 CCGGATAT
69252201 CATTCAATTG
Statistics
Matches: 140, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 5 0.04
40 132 0.94
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:69252133 original size:80 final size:80
Alignment explanation
Indices: 69251993--69252199 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
69251983 CGGAATACAA
* * *
69251993 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
69252057 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* **
69252073 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGAGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
69252137 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
69252153 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
69252200 TCATTCAATT
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 4 0.04
80 102 0.94
81 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:69255923 original size:459 final size:459
Alignment explanation
Indices: 69255058--69255975 Score: 1428
Period size: 459 Copynumber: 2.0 Consensus size: 459
69255048 ACCTCGAAAC
69255058 AAAGTCGGAGATGTCTCGTTTCATACCATGCCACCAAAACCGACGTTTCAAATCGTTGTACATCT
1 AAAGTCGGAGATGTCTCGTTTCATACCATGCCACCAAAACCGACGTTTCAAATCGTTGTACATCT
* *
69255123 TCGTACTCCCCGGGTGGATTGCCATTTGGCTACAATGGGCTTCGTTCAGAATTATCGAAATAAGT
66 TCGTACTCCCCGGGTGGATTGCCATTCGGCTACAATGGGCTTCGTTCAGAATCATCGAAATAAGT
* * * * *
69255188 TTCGAATTCTTTGGAACACACAGATGACTTCTGAACCTCAAACAATCGTCATCATCGATCTGAAA
131 TTCGAATTCTTTGGAACACACAGACGACTTCCGAACCTCAAACAATCGTCATCACCAATATGAAA
* * *
69255253 CTCCAATTCCTTGTTCGGAACACACTCGGCCCGTTTTGCAACCAACTCATCGTCGACCTTCTGAG
196 CTCCAATTCCTTGTTCGGAACACACTCAGCCCGTTTTGCAACCAACTCATCATCAACCTTCTGAG
* **
69255318 CCTCACAAATTTGATGTATCAATAATGGTTTGGCTTTCAATTCAGCTACTAACATGTTGTCGGAT
261 CCTCACAAATTTGATGTATCAACAATGGTTTGGCTTTCAATTCAGCTACTAACACATTGTCGGAT
* * * *
69255383 CGAGCGGACAAGTGCACATTCATCGCTCGTAAAGCAAATAATGATTTACGACTCAAGGCATCCGC
326 AGAACAGACAAGTGCACATTCATCGCTCGTAAAGCAAACAATGATTTACGACTCAAGGCATCCGC
* * * *
69255448 AACCACATTCGCCTTTCCCGGGTGATAGTCAATGACCAGCTCATAATCCTTTAACAGCTCGAGCC
391 AACCACATTAGCCTTTCCCGGGTGATAATCAATGACAAGCTCATAATCCTTTAACAACTCGAGCC
69255513 AACG
456 AACG
* *
69255517 AAAGTCGGAGATGTCTCTTTTCATACCATGCCACCAAAACCGTCGTTTCAAATCGTTGTACATCT
1 AAAGTCGGAGATGTCTCGTTTCATACCATGCCACCAAAACCGACGTTTCAAATCGTTGTACATCT
*
69255582 TCGTACTCCCCGGGTGGATTGCCATTCGGCTACAATGGGCTTCGTTCAGAATCATTGAAATAAG-
66 TCGTACTCCCCGGGTGGATTGCCATTCGGCTACAATGGGCTTCGTTCAGAATCATCGAAATAAGT
69255646 TTCTGAATTCTTTGGAACACACAGACGACTTCCGAACCTCAAACAATCGTCATCACCAATATGAA
131 TTC-GAATTCTTTGGAACACACAGACGACTTCCGAACCTCAAACAATCGTCATCACCAATATGAA
* *
69255711 ACTCCGATTCCTTGTTCGGAACACACTCAGCCCGTTTTGCAACCAACTCATCATCAACTTTCTGA
195 ACTCCAATTCCTTGTTCGGAACACACTCAGCCCGTTTTGCAACCAACTCATCATCAACCTTCTGA
* * *
69255776 GCTTCACGAATTTGATG-AGTCAACAATGGTTTGGCCTTT-AATTCGGCTACTAACACATTGTCG
260 GCCTCACAAATTTGATGTA-TCAACAATGGTTTGG-CTTTCAATTCAGCTACTAACACATTGTCG
* * * * * * * * *
69255839 GGTAGAATAGACAAGTGTACATTCATTGCTCGTAAAGCAAACAGTGATTTCCGGCTTAAGGCGTC
323 GATAGAACAGACAAGTGCACATTCATCGCTCGTAAAGCAAACAATGATTTACGACTCAAGGCATC
* *
69255904 CGCAACCACATTAGCCTTTCCCGGGTGATAATCAATGACAAGCTCGTAATCTTTTAACAACTCGA
388 CGCAACCACATTAGCCTTTCCCGGGTGATAATCAATGACAAGCTCATAATCCTTTAACAACTCGA
69255969 GCCAACG
453 GCCAACG
69255976 TCTTTGTCGC
Statistics
Matches: 416, Mismatches: 40, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
458 4 0.01
459 408 0.98
460 4 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (459 bp):
AAAGTCGGAGATGTCTCGTTTCATACCATGCCACCAAAACCGACGTTTCAAATCGTTGTACATCT
TCGTACTCCCCGGGTGGATTGCCATTCGGCTACAATGGGCTTCGTTCAGAATCATCGAAATAAGT
TTCGAATTCTTTGGAACACACAGACGACTTCCGAACCTCAAACAATCGTCATCACCAATATGAAA
CTCCAATTCCTTGTTCGGAACACACTCAGCCCGTTTTGCAACCAACTCATCATCAACCTTCTGAG
CCTCACAAATTTGATGTATCAACAATGGTTTGGCTTTCAATTCAGCTACTAACACATTGTCGGAT
AGAACAGACAAGTGCACATTCATCGCTCGTAAAGCAAACAATGATTTACGACTCAAGGCATCCGC
AACCACATTAGCCTTTCCCGGGTGATAATCAATGACAAGCTCATAATCCTTTAACAACTCGAGCC
AACG
Found at i:69260637 original size:29 final size:28
Alignment explanation
Indices: 69260603--69260705 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
69260593 TACTCAATCA
*
69260603 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
69260632 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
69260661 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
69260690 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
69260706 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:69266838 original size:13 final size:13
Alignment explanation
Indices: 69266820--69266896 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
69266810 AGTTCTTCAT
69266820 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
69266833 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
69266846 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
69266859 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
** *
69266872 TATTTTTGAGAAG
1 TGCTTTTGAAAAG
*
69266885 TGCTTTGGAAAA
1 TGCTTTTGAAAA
69266897 ATTTAAGTAT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 53 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:69266879 original size:39 final size:39
Alignment explanation
Indices: 69266820--69266896 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
69266810 AGTTCTTCAT
*
69266820 TGCTTTTGAAAAGTGCTTTTGAAAAGTGCTGTGGAAAAG
1 TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAAG
* * * *
69266859 TGCTTTTGAGAAGTATTTTTGAGAAGTGCTTTGGAAAA
1 TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAA
69266897 ATTTAAGTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (39 bp):
TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAAG
Done.