Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 225 of 438
Found at i:69271405 original size:7 final size:7
Alignment explanation
Indices: 69271393--69271425 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
69271383 CCATTCCTAA
69271393 TCATCCC
1 TCATCCC
69271400 TCATCCC
1 TCATCCC
69271407 TCATCCC
1 TCATCCC
69271414 TCATCCC
1 TCATCCC
69271421 TCATC
1 TCATC
69271426 ATTTTCTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.55, G:0.00, T:0.30
Consensus pattern (7 bp):
TCATCCC
Found at i:69273649 original size:2 final size:2
Alignment explanation
Indices: 69273642--69273673 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
69273632 TTTTGGTATG
69273642 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
69273674 AGCCATGCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:69275013 original size:52 final size:52
Alignment explanation
Indices: 69274924--69275025 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
69274914 AAGGTGTATG
*
69274924 GGTGATAATAAAATGAAAAAAAAATGTGTGTGAGTGTGGTAA-CCCCCCCTA
1 GGTGATAAAAAAATGAAAAAAAAATGTGTGTGAGTGTGGTAATCCCCCCCTA
69274975 GGTGATAAAAAAATGAAAAAAAAAATGTGTGTGAGTGTGGTAATCCCCCCC
1 GGTGATAAAAAAATG-AAAAAAAAATGTGTGTGAGTGTGGTAATCCCCCCC
69275026 CCTTGCCGTG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 14 0.29
52 27 0.56
53 7 0.15
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.23
Consensus pattern (52 bp):
GGTGATAAAAAAATGAAAAAAAAATGTGTGTGAGTGTGGTAATCCCCCCCTA
Found at i:69276360 original size:40 final size:40
Alignment explanation
Indices: 69276301--69276442 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
69276291 AAATTGAATG
* * *
69276301 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
69276341 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
69276381 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
69276421 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
69276443 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:69276443 original size:40 final size:39
Alignment explanation
Indices: 69276340--69276468 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
69276330 TGCTGGAAAT
* * *
69276340 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
69276380 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
69276420 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
69276460 TATATCCGG
1 TATATCCGG
69276469 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:69284357 original size:40 final size:40
Alignment explanation
Indices: 69284298--69284439 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
69284288 AAATTGAATG
* * *
69284298 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
69284338 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
69284378 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
69284418 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
69284440 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:69284440 original size:40 final size:39
Alignment explanation
Indices: 69284337--69284465 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
69284327 TGCTGGAAAT
* * *
69284337 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
69284377 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
69284417 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
69284457 TATATCCGG
1 TATATCCGG
69284466 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:69286078 original size:47 final size:46
Alignment explanation
Indices: 69285966--69286139 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
69285956 GGGATATTTG
* *
69285966 GGCATCCGAACTCGTTTAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
69286013 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATG---CGA
*
69286059 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCG-A
* *
69286107 CGC--CC-AGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
69286140 TATGGGCGGG
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 4 0.04
45 29 0.27
46 34 0.31
47 32 0.30
48 5 0.05
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGA
Found at i:69286133 original size:45 final size:45
Alignment explanation
Indices: 69285974--69286144 Score: 188
Period size: 45 Copynumber: 3.7 Consensus size: 45
69285964 TGGGCATCCG
* * *
69285974 AACTCGTTTAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCC
* * *
69286020 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CC
69286066 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 -AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
*
69286112 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69286145 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 10, Indels: 21
0.77 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 35 0.33
46 27 0.26
47 25 0.24
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
Found at i:69287710 original size:16 final size:17
Alignment explanation
Indices: 69287683--69287723 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
69287673 AACAAAGAAA
69287683 TTTTGGGATTTCAGGAT
1 TTTTGGGATTTCAGGAT
*
69287700 TTTTGGG-TTTCGGGAT
1 TTTTGGGATTTCAGGAT
69287716 TTTTGGGA
1 TTTTGGGA
69287724 CGTTACAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.12, C:0.05, G:0.34, T:0.49
Consensus pattern (17 bp):
TTTTGGGATTTCAGGAT
Found at i:69288652 original size:23 final size:23
Alignment explanation
Indices: 69288622--69288679 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
69288612 AATTATGAAA
69288622 CTCACAAAGAGCCTATCAGGAAG
1 CTCACAAAGAGCCTATCAGGAAG
69288645 CTCACAAAGAGCCTATCAGGAAG
1 CTCACAAAGAGCCTATCAGGAAG
69288668 CTCACAAAGAGC
1 CTCACAAAGAGC
69288680 TATGTAACAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.40, C:0.28, G:0.21, T:0.12
Consensus pattern (23 bp):
CTCACAAAGAGCCTATCAGGAAG
Found at i:69288764 original size:24 final size:24
Alignment explanation
Indices: 69288722--69288773 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
69288712 AAGTTTAAGC
*
69288722 GAGCCATGTCAGGAAGCTCAT-AA
1 GAGCCATATCAGGAAGCTCATGAA
*
69288745 GAGCCTATATCAGGATGCTCATGAA
1 GAGCC-ATATCAGGAAGCTCATGAA
69288770 GAGC
1 GAGC
69288774 TGTGTTTGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.20
24 14 0.56
25 6 0.24
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCATGAA
Found at i:69290124 original size:28 final size:28
Alignment explanation
Indices: 69290092--69290150 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
69290082 GTGACCAAAG
69290092 TAAGTTCATATGTTAATAAGCATTAATA
1 TAAGTTCATATGTTAATAAGCATTAATA
69290120 TAAGTTCATATGTTAATAAGCATTAATA
1 TAAGTTCATATGTTAATAAGCATTAATA
69290148 TAA
1 TAA
69290151 TTGTATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (28 bp):
TAAGTTCATATGTTAATAAGCATTAATA
Found at i:69290740 original size:36 final size:37
Alignment explanation
Indices: 69290667--69290740 Score: 105
Period size: 41 Copynumber: 1.9 Consensus size: 37
69290657 TGAACATATA
69290667 TTAGCCTTGTGATTAAATGGAATTGTAGTATATTATATGTG
1 TTAGCCTTGTGATTAAATGGAATTGTAG----TTATATGTG
69290708 TTAGCCTTGTGATTAAATGGAATTGTAG-TATAT
1 TTAGCCTTGTGATTAAATGGAATTGTAGTTATAT
69290741 TATGTTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
36 5 0.15
41 28 0.85
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (37 bp):
TTAGCCTTGTGATTAAATGGAATTGTAGTTATATGTG
Found at i:69310947 original size:25 final size:25
Alignment explanation
Indices: 69310919--69310988 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
69310909 CTCTTTTAAT
*
69310919 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
69310944 AACTGGGGTAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
69310969 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69310989 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:69311831 original size:27 final size:26
Alignment explanation
Indices: 69311796--69311873 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
69311786 GGGCATATTC
69311796 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
69311823 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAGGGG-TATTACG
*
69311850 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-TAGGGGTATT
69311874 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 5 0.12
27 34 0.81
28 3 0.07
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:69312117 original size:81 final size:81
Alignment explanation
Indices: 69311931--69312128 Score: 206
Period size: 81 Copynumber: 2.4 Consensus size: 81
69311921 TAGTATTTCA
* * *
69311931 GTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTT
1 GTAATTTTGTAAACCAATGGTATTTC-AGTAA-TTTCACAAAG-CAAGGGTATTTTGGTAATTTT
**
69311995 GTAAATCAGGGGTATTTTG
63 ACAAATCAGGGGTATTTTG
** ** * *
69312014 GTAATTTTACAAATTGAA-GGTATTTCGGTAATTTCACAAA-CCAGTGGTATTTTGGTAATTTTA
1 GTAATTTTGTAAA-CCAATGGTATTTCAGTAATTTCACAAAGCAAG-GGTATTTTGGTAATTTTA
69312077 CAAA-CTAGGGGTATTTTG
64 CAAATC-AGGGGTATTTTG
*
69312095 GTAATTTTGTAAACCAATGGTATTTTAGTAATTT
1 GTAATTTTGTAAACCAATGGTATTTCAGTAATTT
69312129 TGTAAATCGA
Statistics
Matches: 93, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
80 6 0.06
81 56 0.60
82 7 0.08
83 22 0.24
84 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.43
Consensus pattern (81 bp):
GTAATTTTGTAAACCAATGGTATTTCAGTAATTTCACAAAGCAAGGGTATTTTGGTAATTTTACA
AATCAGGGGTATTTTG
Found at i:69312130 original size:27 final size:27
Alignment explanation
Indices: 69311914--69312134 Score: 151
Period size: 27 Copynumber: 8.1 Consensus size: 27
69311904 GTAAATCTAC
* **
69311914 AAACCAATAGTATTTCAGTAATTTTGT
1 AAACCAATGGTATTTTGGTAATTTTGT
*
69311941 AAACCAATGGTATTTCT-ATAATTTT-T
1 AAACCAATGGTATTT-TGGTAATTTTGT
* * *
69311967 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAATGGTATTTTGGTAATTTTGT
* ** **
69311997 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAATGGTATTTTGGTAATTTTGT
** * ***
69312024 AAATTGAA-GGTATTTCGGTAATTTCAC
1 AAA-CCAATGGTATTTTGGTAATTTTGT
* **
69312051 AAACCAGTGGTATTTTGGTAATTTTAC
1 AAACCAATGGTATTTTGGTAATTTTGT
* **
69312078 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCAATGGTATTTTGGTAATTTTGT
*
69312105 AAACCAATGGTATTTTAGTAATTTTGT
1 AAACCAATGGTATTTTGGTAATTTTGT
69312132 AAA
1 AAA
69312135 TCGAGTGTAA
Statistics
Matches: 159, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.01
27 130 0.82
28 9 0.06
29 17 0.11
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
AAACCAATGGTATTTTGGTAATTTTGT
Found at i:69312190 original size:27 final size:27
Alignment explanation
Indices: 69311976--69312210 Score: 143
Period size: 27 Copynumber: 8.7 Consensus size: 27
69311966 TAGAAAGTCA
* **
69311976 AGGGTATTTTTGTAATTTTGTAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCG
*
69312002 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTACAAATCG
* * * *
69312030 AAGGTATTTCGGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTACAAATCG
*
69312056 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTACAAATCG
** * *
69312083 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
* * **
69312111 ATGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* **** * **
69312138 AGTGTAAAAACGGTAATTCTGTAAATCG
1 AGGGT-ATTTTGGTAATTTTACAAATCG
* *
69312166 AGGGTACTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAATCG
** *
69312193 AGGACATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
69312211 GGTAAACTAA
Statistics
Matches: 162, Mismatches: 41, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
26 2 0.01
27 136 0.84
28 24 0.15
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:69313181 original size:43 final size:42
Alignment explanation
Indices: 69313133--69313286 Score: 154
Period size: 42 Copynumber: 3.6 Consensus size: 42
69313123 TCCCTGACGT
* *
69313133 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGAAATCAAATATCGATGCCA-TGTCCCAGACAG
* * *
69313176 GGTCTTACACAAAATCAAATA-CGATGCTGATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGC-CATGTCCCAGACAG
*
69313218 GGTCTTACACGTAAATCTCAAAT-T-GATGCCAATGTCCTAGAC-G
1 GGTCTTACACG-AAA--TCAAATATCGATGCC-ATGTCCCAGACAG
*
69313261 TGGTCTTACACGAAATCACATATCGA
1 -GGTCTTACACGAAATCAAATATCGA
69313287 AATCCTATGT
Statistics
Matches: 92, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
41 5 0.05
42 28 0.30
43 27 0.29
44 26 0.28
45 6 0.07
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATCGATGCCATGTCCCAGACAG
Found at i:69313265 original size:44 final size:43
Alignment explanation
Indices: 69313123--69313283 Score: 152
Period size: 44 Copynumber: 3.8 Consensus size: 43
69313113 AATGCCGACA
* * * *
69313123 TCCCTGACGTGGTCTTACATGTAA-TCAAATATCGATGCCACTG
1 TCCCAGACGTGGTCTTACACGAAACTCAAATAT-GATGCCAATG
* * **
69313166 TCCCAGACAG-GGTCTTACAC-AAAATCAAATACGATGCTGATG
1 TCCCAGAC-GTGGTCTTACACGAAACTCAAATATGATGCCAATG
*
69313208 TCCCAGACATGGTCTTACACGTAAATCTCAAAT-TGATGCCAATG
1 TCCCAGACGTGGTCTTACACG-AAA-CTCAAATATGATGCCAATG
* *
69313252 TCCTAGACGTGGTCTTACACGAAA-TCACATAT
1 TCCCAGACGTGGTCTTACACGAAACTCAAATAT
69313284 CGAAATCCTA
Statistics
Matches: 96, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
41 5 0.05
42 28 0.29
43 26 0.27
44 31 0.32
45 6 0.06
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGAAACTCAAATATGATGCCAATG
Found at i:69313297 original size:44 final size:43
Alignment explanation
Indices: 69313123--69313286 Score: 160
Period size: 43 Copynumber: 3.8 Consensus size: 43
69313113 AATGCCGACA
* * *
69313123 TCCCTGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACTG
1 TCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCTA-TG
*
69313166 TCCCAGACAG-GGTCTTACACAAAATCAAATA-CGATG-CTGATG
1 TCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGCCT-ATG
* *
69313208 TCCCAGACATGGTCTTACACGTAAATCTCAAAT-T-GATGCCAATG
1 TCCCAGACGTGGTCTTACACG-AAA--TCAAATATCGATGCCTATG
* *
69313252 TCCTAGACGTGGTCTTACACGAAATCACATATCGA
1 TCCCAGACGTGGTCTTACACGAAATCAAATATCGA
69313287 AATCCTATGT
Statistics
Matches: 100, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
41 6 0.06
42 26 0.26
43 34 0.34
44 27 0.27
45 7 0.07
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCTATG
Found at i:69318293 original size:38 final size:38
Alignment explanation
Indices: 69318251--69318381 Score: 138
Period size: 38 Copynumber: 3.2 Consensus size: 38
69318241 TTTCAAATTA
69318251 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
69318289 ACATGTTTAACTGTGG-AGTATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCA-TATCCACTTAGCACCACG-T--T
*
69318330 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
69318374 ACATGTAT
1 ACATGTAT
69318382 CAATATGTGT
Statistics
Matches: 76, Mismatches: 6, Indels: 22
0.73 0.06 0.21
Matches are distributed among these distances:
37 1 0.01
38 33 0.43
39 1 0.01
40 4 0.05
41 2 0.03
42 1 0.01
43 1 0.01
44 2 0.03
45 3 0.04
46 1 0.01
47 26 0.34
48 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:69318407 original size:48 final size:48
Alignment explanation
Indices: 69318308--69318429 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 48
69318298 ACTGTGGAGT
* *
69318308 ATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCAT
1 ATCCACTTAGCACCACGTTACATGTATCAATATATGTAACCGTGGCAA
* ** *
69318355 ATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATTGTGGTAA
1 ATCCACTTAGCACCACGTTACATGTATCAATATATGTAACCGTGGCAA
* *
69318403 ATCCACTTAGCACCACATTACACGTAT
1 ATCCACTTAGCACCACGTTACATGTAT
69318430 AGCCGTGGTA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 20 0.30
48 46 0.70
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.30
Consensus pattern (48 bp):
ATCCACTTAGCACCACGTTACATGTATCAATATATGTAACCGTGGCAA
Found at i:69322424 original size:6 final size:6
Alignment explanation
Indices: 69322415--69322439 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
69322405 GTTTTGTGTT
69322415 TGTACC TGTACC TGTACC TGTACC T
1 TGTACC TGTACC TGTACC TGTACC T
69322440 AGCTACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (6 bp):
TGTACC
Found at i:69327082 original size:49 final size:49
Alignment explanation
Indices: 69326906--69327420 Score: 798
Period size: 49 Copynumber: 10.7 Consensus size: 49
69326896 CCCTTCGGGA
* * * * **
69326906 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCTGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69326953 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69327000 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69327051 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69327100 CTTATCACATATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69327149 CTTATCAC----ATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69327194 CTTATCACATATATATATACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69327243 CTTATCACATATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69327292 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69327341 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69327390 CTTATCTCATATATATACA--TTCACACTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
69327421 GTATAAAATC
Statistics
Matches: 444, Mismatches: 14, Indels: 20
0.93 0.03 0.04
Matches are distributed among these distances:
45 45 0.10
46 1 0.00
47 56 0.13
49 295 0.66
51 47 0.11
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69327331 original size:241 final size:240
Alignment explanation
Indices: 69326906--69327402 Score: 807
Period size: 241 Copynumber: 2.1 Consensus size: 240
69326896 CCCTTCGGGA
* * **
69326906 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCTGCCCTATCACATATATACAC
1 CTTATCACA--TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
69326971 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATATACACTTTCACATTCATCA
*
69327036 CATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
128 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
69327101 TTATCACATATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
193 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
69327149 CTTATCACATATACACTTTCACATTCATCCCATCGGCCATTAGGCCTTATCACATATATATATAC
1 CTTATCACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATACAC
* *
69327214 TTTCACATTCATCCCATCGGCCATTAGGCCTTATCAC-ATATATATACACTTTCACATTCATCCC
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATATACACTTTCACATTCATCAC
69327278 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
129 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
69327343 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69327390 CTTATCTCATATA
1 CTTATCACATATA
69327403 TATACATTCA
Statistics
Matches: 237, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
241 184 0.78
243 53 0.22
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (240 bp):
CTTATCACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69330282 original size:2 final size:2
Alignment explanation
Indices: 69330275--69330306 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
69330265 GTTTAATTAG
69330275 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69330307 GAGGATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69331651 original size:2 final size:2
Alignment explanation
Indices: 69331644--69331670 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
69331634 AGAAAAGAAG
69331644 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
69331671 GTTTGGTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69338394 original size:19 final size:19
Alignment explanation
Indices: 69338366--69338406 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
69338356 AAATCCCTAG
69338366 TTTTCCCTTTTTCTT-TTTC
1 TTTTCCC-TTTTCTTCTTTC
*
69338385 TTTTCTCTTTTCTTCTTTC
1 TTTTCCCTTTTCTTCTTTC
69338404 TTT
1 TTT
69338407 CCTTGCTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCCCTTTTCTTCTTTC
Found at i:69340323 original size:44 final size:42
Alignment explanation
Indices: 69340260--69340429 Score: 155
Period size: 43 Copynumber: 4.0 Consensus size: 42
69340250 TTCCTATATG
*
69340260 TGATTTCGTGTAAGACCATGTATGGGACGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACCATGTATGGGACATTGGCATCGTATT
*
69340301 TGAGATTTACGTGTAAGACCATGTTTGGGACATTGGCATCGTATT
1 T--GATTT-CGTGTAAGACCATGTATGGGACATTGGCATCGTATT
* * * * * *
69340346 TGATTTCGTGTAAGACCCTGTTTGGAATAGTGGCATCAATATT
1 TGATTTCGTGTAAGACCATGTATGGGACATTGGCATC-GTATT
* * * * * *
69340389 TGATTACATGGAAGACCACT-TCTGGGACGTTGGCATTGTAT
1 TGATTTCGTGTAAGACCA-TGTATGGGACATTGGCATCGTAT
69340430 GAGTTTTCTG
Statistics
Matches: 105, Mismatches: 18, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.29
43 39 0.37
44 31 0.30
45 4 0.04
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTATGGGACATTGGCATCGTATT
Found at i:69340404 original size:43 final size:42
Alignment explanation
Indices: 69340315--69340406 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
69340305 ATTTACGTGT
* * * * * *
69340315 AAGACCATGTTTGGGACATTGGCATCGTATTTGATTTCGTGT
1 AAGACCATGTTTGGAACAGTGGCATCATATTTGATTACATGG
* *
69340357 AAGACCCTGTTTGGAATAGTGGCATCAATATTTGATTACATGG
1 AAGACCATGTTTGGAACAGTGGCATC-ATATTTGATTACATGG
69340400 AAGACCA
1 AAGACCA
69340407 CTTCTGGGAC
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
42 22 0.55
43 18 0.45
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (42 bp):
AAGACCATGTTTGGAACAGTGGCATCATATTTGATTACATGG
Found at i:69343302 original size:71 final size:71
Alignment explanation
Indices: 69343214--69343377 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
69343204 GAGATGTATC
69343214 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69343279 AGGACA
66 AGGACA
*
69343285 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
69343350 CGGACA
66 AGGACA
69343356 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
69343378 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:69350896 original size:70 final size:71
Alignment explanation
Indices: 69350746--69350908 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
69350736 GAGATGTATC
69350746 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69350811 AGGACA
66 AGGACA
69350817 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69350881 AGGACA
66 AGGACA
69350887 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
69350909 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:69357553 original size:47 final size:47
Alignment explanation
Indices: 69357495--69357615 Score: 224
Period size: 47 Copynumber: 2.6 Consensus size: 47
69357485 GCATTGGCAC
69357495 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
69357542 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
69357589 TAAGATAAGGATATCATGTAAGACCAT
1 TAAGACAAGGATACCATGTAAGACCAT
69357616 TCCAAGGCAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:69357723 original size:55 final size:54
Alignment explanation
Indices: 69357595--69357899 Score: 368
Period size: 55 Copynumber: 5.6 Consensus size: 54
69357585 TTGGTAAGAT
* * *
69357595 AAGGATATCATGTAAGACCAT-TCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGT-CAAGACATGGCATTGATGAGTTCTATAAGGC
* *
69357649 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * ** *
69357704 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGAAATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
*
69357757 AAGGATGCCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
69357812 AAAGG-TCCCATCTAAGACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
69357865 AAGGATACCACGTAAGGCCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
69357900 ATGGTAAGTT
Statistics
Matches: 217, Mismatches: 26, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
52 8 0.04
53 73 0.34
54 43 0.20
55 85 0.39
56 8 0.04
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:69357780 original size:108 final size:108
Alignment explanation
Indices: 69357603--69357899 Score: 477
Period size: 108 Copynumber: 2.7 Consensus size: 108
69357593 ATAAGGATAT
* * * * *
69357603 CATGTAAGACCATTCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
69357668 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
** *
69357712 CATGTAAGACCATGCCAAGGCATGAAATTGGTGAGTTCATAAGGCAAGGATGCCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
69357777 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * * *
69357820 CATCTAAGACCATGCCAAGACATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGGCCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
69357885 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
69357900 ATGGTAAGTT
Statistics
Matches: 173, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
108 140 0.81
109 33 0.19
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:69380601 original size:31 final size:31
Alignment explanation
Indices: 69380558--69380621 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
69380548 CCTTTTCGTA
69380558 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
69380589 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
69380620 TT
1 TT
69380622 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:69380859 original size:23 final size:24
Alignment explanation
Indices: 69380814--69380977 Score: 255
Period size: 23 Copynumber: 7.0 Consensus size: 24
69380804 GCTTTATCAT
* *
69380814 ATAACTGGAGGCCT-AGCCTTTTTA
1 ATAACTGG-GGCATAAGCCCTTTTA
69380838 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69380861 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
69380884 ATAACTGGGGCATAAGCCATTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69380908 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69380931 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
69380955 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69380978 GCACTTCCTC
Statistics
Matches: 131, Mismatches: 5, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
23 69 0.53
24 62 0.47
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69380901 original size:47 final size:47
Alignment explanation
Indices: 69380834--69380976 Score: 261
Period size: 47 Copynumber: 3.1 Consensus size: 47
69380824 GCCTAGCCTT
69380834 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
69380880 TTTAATAACTGGGGCATAAGCCATTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
69380927 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
69380974 TTT
1 TTT
69380977 TGCACTTCCT
Statistics
Matches: 93, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 16 0.17
47 77 0.83
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:69381049 original size:9 final size:9
Alignment explanation
Indices: 69381035--69381091 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
69381025 ATCTCGTGTG
69381035 CATATCATA
1 CATATCATA
*
69381044 CATATCATGTG
1 CATATCA--TA
69381055 CATATCATA
1 CATATCATA
* *
69381064 CATGTCATGTG
1 CATATCA--TA
69381075 CATATCATA
1 CATATCATA
69381084 CATATCAT
1 CATATCAT
69381092 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:69381054 original size:20 final size:20
Alignment explanation
Indices: 69381031--69381093 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
69381021 GAACATCTCG
69381031 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
69381051 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
69381071 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
69381091 TGT
1 TGT
69381094 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:69381170 original size:25 final size:25
Alignment explanation
Indices: 69381128--69381175 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69381118 TTATATAAAC
* * *
69381128 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69381153 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69381176 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69388160 original size:48 final size:48
Alignment explanation
Indices: 69388104--69388233 Score: 206
Period size: 48 Copynumber: 2.7 Consensus size: 48
69388094 ATGTGTGATG
*
69388104 TGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATAAGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
* * * **
69388152 TGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
69388200 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
69388234 TGTTGTAATA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
Found at i:69388349 original size:36 final size:37
Alignment explanation
Indices: 69388273--69388398 Score: 202
Period size: 36 Copynumber: 3.4 Consensus size: 37
69388263 AACTTGGAAA
* *
69388273 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACATGTGGAGAT
69388311 TATGTCCGGGTAAGACCCGATGACTAC-TGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
69388347 TATGTCCGGGTAAGA-CCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
69388383 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
69388399 TTCGTAATAA
Statistics
Matches: 84, Mismatches: 2, Indels: 5
0.92 0.02 0.05
Matches are distributed among these distances:
35 11 0.13
36 47 0.56
37 22 0.26
38 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
Found at i:69390276 original size:40 final size:40
Alignment explanation
Indices: 69390221--69390529 Score: 543
Period size: 40 Copynumber: 7.8 Consensus size: 40
69390211 GAGAATTGAG
*
69390221 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
69390261 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69390301 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69390341 AGTGA--TATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
69390379 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69390419 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69390459 AGTGATGTA-CCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
69390498 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
69390530 ATCATGTTGG
Statistics
Matches: 260, Mismatches: 6, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
38 38 0.15
39 39 0.15
40 183 0.70
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:69390435 original size:118 final size:118
Alignment explanation
Indices: 69390227--69390529 Score: 543
Period size: 118 Copynumber: 2.6 Consensus size: 118
69390217 TGAGAGTGAT
*
69390227 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCGAAGAGC
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGC
69390292 ATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG
66 ATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
69390345 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTTCGAAGAGC
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGC
69390410 ATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG
66 ATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG
* * * *
69390463 ATGTACCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAG
1 ATAT-CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAG
69390528 CA
65 CA
69390530 ATCATGTTGG
Statistics
Matches: 177, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
118 119 0.67
119 58 0.33
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (118 bp):
ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGC
ATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:69394571 original size:48 final size:48
Alignment explanation
Indices: 69394515--69394644 Score: 206
Period size: 48 Copynumber: 2.7 Consensus size: 48
69394505 ATGTGTGATG
*
69394515 TGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATAAGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
* * * **
69394563 TGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
69394611 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
69394645 TGTTGTAATA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
Found at i:69394738 original size:37 final size:37
Alignment explanation
Indices: 69394684--69394811 Score: 211
Period size: 37 Copynumber: 3.4 Consensus size: 37
69394674 AACTTGGAAA
* *
69394684 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACATGTGGAGAT
69394722 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
69394759 TATGTCCGGGTAAGACCCGATGACTACATGTGGACAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
69394796 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
69394812 TTCGTAATAA
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 82 0.95
38 4 0.05
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
Found at i:69399657 original size:23 final size:24
Alignment explanation
Indices: 69399581--69399746 Score: 252
Period size: 24 Copynumber: 7.0 Consensus size: 24
69399571 GCTTTATCAT
*
69399581 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
69399606 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
69399631 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69399654 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69399678 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69399701 ATAACT-GGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69399724 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69399747 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 1, Indels: 15
0.89 0.01 0.10
Matches are distributed among these distances:
22 12 0.09
23 44 0.33
24 46 0.35
25 25 0.19
26 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69399688 original size:47 final size:47
Alignment explanation
Indices: 69399602--69399745 Score: 256
Period size: 46 Copynumber: 3.1 Consensus size: 47
69399592 CCTAGCCTCT
69399602 TTTAATAACTGGGGCA-AAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC--TTTTAATAACTGGGGCATAAGCCC
69399650 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
69399697 TTTAATAACT-GGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
69399743 TTT
1 TTT
69399746 TGCACTTCCT
Statistics
Matches: 95, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
46 39 0.41
47 34 0.36
48 16 0.17
49 6 0.06
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:69399818 original size:9 final size:9
Alignment explanation
Indices: 69399804--69399860 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
69399794 ATCTCGTATG
69399804 CATATCATA
1 CATATCATA
*
69399813 CATATCATGTG
1 CATATCA--TA
69399824 CATATCATA
1 CATATCATA
* *
69399833 CATGTCATGTG
1 CATATCA--TA
69399844 CATATCATA
1 CATATCATA
69399853 CATATCAT
1 CATATCAT
69399861 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:69399825 original size:20 final size:20
Alignment explanation
Indices: 69399802--69399862 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
69399792 ACATCTCGTA
69399802 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
*
69399822 TGCATATCATACATGTCATG
1 TGCATATCATACATATCATG
69399842 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
69399862 T
1 T
69399863 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
TGCATATCATACATATCATG
Found at i:69399927 original size:25 final size:25
Alignment explanation
Indices: 69399899--69399946 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69399889 ATATATAAGC
* * *
69399899 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69399924 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69399947 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69404999 original size:19 final size:19
Alignment explanation
Indices: 69404977--69405023 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
69404967 TATTTCTTTA
69404977 ATTTTAGTTAATTTATGT-T
1 ATTTTAGTTAA-TTATGTCT
*
69404996 ATTTT-GATTAATTATTTCT
1 ATTTTAG-TTAATTATGTCT
69405015 ATTTTAGTT
1 ATTTTAGTT
69405024 TTTCATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 6 0.25
19 17 0.71
20 1 0.04
ACGTcount: A:0.26, C:0.02, G:0.09, T:0.64
Consensus pattern (19 bp):
ATTTTAGTTAATTATGTCT
Found at i:69410073 original size:16 final size:16
Alignment explanation
Indices: 69410052--69410082 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69410042 AATTCAACCC
69410052 AAAAATTACACTTTGG
1 AAAAATTACACTTTGG
*
69410068 AAAAATTACATTTTG
1 AAAAATTACACTTTG
69410083 CCCCTAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAATTACACTTTGG
Found at i:69416187 original size:27 final size:27
Alignment explanation
Indices: 69416157--69416252 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 27
69416147 CAATATCGTA
* *
69416157 GCAAAGCTACCAGAAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* * *
69416184 GCAAAGCCACCAGTATCAGTAATTGTA
1 GCAAAGCCACCAGTAACAGTAAATGTG
* *
69416211 GCATAGCCACCAGTAACAGTGAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* * *
69416238 ACATAGTCACCAGTA
1 GCAAAGCCACCAGTA
69416253 CAGAACTTCC
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.19
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:69416464 original size:27 final size:27
Alignment explanation
Indices: 69416393--69416480 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
69416383 GGGCATAATC
* * * *
69416393 GTCATTTTAGCCTACAGGGGCTTTACG
1 GTCATTTTACCCTATAGGGGCATTACA
69416420 GTCATTTTACCCTATAGGGGCATTACA
1 GTCATTTTACCCTATAGGGGCATTACA
* * **
69416447 GTCTTTTTA-CCTATTAGGGGTATTTTA
1 GTCATTTTACCCTA-TAGGGGCATTACA
69416474 GTCATTT
1 GTCATTT
69416481 CATCCTACAA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.08
27 47 0.92
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGCATTACA
Found at i:69416797 original size:27 final size:27
Alignment explanation
Indices: 69416488--69416804 Score: 246
Period size: 27 Copynumber: 11.7 Consensus size: 27
69416478 TTTCATCCTA
* * * *
69416488 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
69416515 CAAGGGTATTTCAGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
69416542 CAATGGTATTTCT-ATAATTTTTGAAAGT
1 CAAGGGTATTT-TGGTAATTTTACAAA-T
* *
69416570 CAAGGGTATTTTTGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
69416597 TAAGGGTATTTCGGT-ACTTTCCTAAAT
1 CAAGGGTATTTTGGTAATTTTAC-AAAT
* * *
69416624 TAGGGGTATTTTGGTAACTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
69416651 CAAGGGTATTTTAGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
69416678 CAAAGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
69416705 TAGGGGTATTGTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
69416731 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
69416758 CTAGGGGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
69416786 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
69416805 CTACCCTACA
Statistics
Matches: 239, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
26 6 0.03
27 206 0.86
28 27 0.11
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:69416803 original size:81 final size:81
Alignment explanation
Indices: 69416488--69416804 Score: 273
Period size: 81 Copynumber: 3.9 Consensus size: 81
69416478 TTTCATCCTA
* * * * * *
69416488 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGCAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCGCAAACCAAGGGTATTT
* **
69416553 CT-ATAATTTTTGAAAGT
66 -TGGTAATTTTACAAA-T
* * * * * ** *
69416570 CAAGGGTATTTTTGTAATTTTCCAAATTAAGGGTATTTCGGTACTTTC-CTAAATTAGGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCGC-AAACCAAGGGTATT
*
69416634 TTGGTAACTTTACAAAT
65 TTGGTAATTTTACAAAT
* * * * ** *
69416651 CAAGGGTATTTTAGTAATTTTAC-AAGTCAAAGGTATTTCAGTAATTTCACAAATTAGGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTCAGTAATTTCGCAAACCAAGGGTATT
*
69416715 GTGGTAATTTTACAAA-
65 TTGGTAATTTTACAAAT
* * ** * *
69416731 CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 C-AAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCGCAAACCAAGGGTATT
69416796 TTGGTAATT
65 TTGGTAATT
69416805 CTACCCTACA
Statistics
Matches: 189, Mismatches: 40, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
80 4 0.02
81 123 0.65
82 62 0.33
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCGCAAACCAAGGGTATTT
TGGTAATTTTACAAAT
Found at i:69417243 original size:23 final size:23
Alignment explanation
Indices: 69417217--69417264 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
69417207 AATTCTCATG
69417217 TTAGCTTCCCGATGTGGGATTAC
1 TTAGCTTCCCGATGTGGGATTAC
69417240 TTAGCTTCCCGATGTGGGATTAC
1 TTAGCTTCCCGATGTGGGATTAC
69417263 TT
1 TT
69417265 CCAACCAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.38
Consensus pattern (23 bp):
TTAGCTTCCCGATGTGGGATTAC
Found at i:69418845 original size:27 final size:27
Alignment explanation
Indices: 69418815--69418885 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
69418805 CCTTAACGGT
*
69418815 GTACTGTGTATGAATCGCCTTTGTGGC
1 GTACTCTGTATGAATCGCCTTTGTGGC
*
69418842 GTACTCTGTATGAATCGTCTTTGTGGC
1 GTACTCTGTATGAATCGCCTTTGTGGC
*
69418869 GTACTCTATATGAATCG
1 GTACTCTGTATGAATCG
69418886 TGTAACACTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.38
Consensus pattern (27 bp):
GTACTCTGTATGAATCGCCTTTGTGGC
Found at i:69421142 original size:27 final size:28
Alignment explanation
Indices: 69421082--69421174 Score: 111
Period size: 27 Copynumber: 3.4 Consensus size: 28
69421072 ACGTTACAAA
* **
69421082 TGCCTTTGTGGC-ATACTCTGTATAAAT
1 TGCCTTTGTGGCAATACTCTGAATGGAT
*
69421109 AGCCTTTGTGGCAAT-CTCTGAATGGAT
1 TGCCTTTGTGGCAATACTCTGAATGGAT
*
69421136 TGTCTTTGTGG-AATACTCTGAATGGAT
1 TGCCTTTGTGGCAATACTCTGAATGGAT
*
69421163 TGCCTTAGTGGC
1 TGCCTTTGTGGC
69421175 CTATCTTACA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.05
27 50 0.91
28 2 0.04
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (28 bp):
TGCCTTTGTGGCAATACTCTGAATGGAT
Found at i:69422708 original size:40 final size:40
Alignment explanation
Indices: 69422664--69422773 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
69422654 TTCACAATTT
* * *
69422664 GCACAAATGCCTTTGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
69422704 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
69422744 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
69422774 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:69428738 original size:13 final size:14
Alignment explanation
Indices: 69428710--69428744 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
69428700 CCATTATAAA
*
69428710 CCAAACATAGATAG
1 CCAAACATACATAG
69428724 CCAAACAT-CATAG
1 CCAAACATACATAG
69428737 CCAAACAT
1 CCAAACAT
69428745 TTTGTCATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.49, C:0.29, G:0.09, T:0.14
Consensus pattern (14 bp):
CCAAACATACATAG
Found at i:69431062 original size:40 final size:40
Alignment explanation
Indices: 69431003--69431144 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
69430993 AAATTGAATG
* * *
69431003 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
69431043 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
69431083 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
69431123 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
69431145 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:69431145 original size:40 final size:39
Alignment explanation
Indices: 69431042--69431170 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
69431032 TGCTGGAAAT
* * *
69431042 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
69431082 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
69431122 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
69431162 TATATCCGG
1 TATATCCGG
69431171 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:69439081 original size:40 final size:40
Alignment explanation
Indices: 69439015--69439181 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
69439005 AAATTGAATG
* * *
69439015 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
69439054 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
69439094 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69439134 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69439174 ATATCCGG
1 ATATCCGG
69439182 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69443078 original size:31 final size:31
Alignment explanation
Indices: 69443035--69443118 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
69443025 TTAGTCTTAA
*
69443035 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAC
69443065 CATATCACTGGGCCGAAGCCTTTTCATAAAC
1 CATATCACTGGGCCGAAGCCTTTTCATAAAC
* *
69443096 CATATCATTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
69443119 ACTGTAAATG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAC
Found at i:69443189 original size:42 final size:42
Alignment explanation
Indices: 69443142--69443233 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
69443132 TGGCCCTTAG
* *
69443142 GCCCATTTCAATATCACATGTAAT-CTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATAC-CAATGAATGTATGCAA
69443184 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69443226 GCCCATTT
1 GCCCATTT
69443234 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 46 0.98
43 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:69443447 original size:26 final size:26
Alignment explanation
Indices: 69443377--69443551 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
69443367 CCTCTTTAAT
***
69443377 AACTGGGGCA-AAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
69443402 AACTGGGGCA-AAGCCCTTTTCAATT
1 AACTGGGGCATAAGCCCTTTTCAATA
**
69443427 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
69443453 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
69443479 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
69443505 AACTGGGGCATAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
69443531 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
69443552 GCACTTCCTC
Statistics
Matches: 139, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
25 31 0.22
26 108 0.78
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:69444401 original size:27 final size:27
Alignment explanation
Indices: 69444340--69444403 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
69444330 GGCGTATTTA
69444340 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
69444367 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
69444394 TCTTTTTACC
1 TCATTTTACC
69444404 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:69444464 original size:27 final size:27
Alignment explanation
Indices: 69444434--69444806 Score: 169
Period size: 27 Copynumber: 13.8 Consensus size: 27
69444424 TTTCATCCTA
* * *
69444434 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
69444461 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
69444488 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
69444515 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
69444541 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * * **
69444568 CTAGGAGTGTTTTGGTAATTCTACCCTAT
1 CAAGG-GTATTTTGGTAATTTTA-CAAAT
** *
69444597 -AAGGGTATTTCAGTAATTTCAC-AAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **** **
69444622 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * * *
69444649 AAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ***** * *
69444676 CGAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
69444703 CGAGGGTACTTTGGTAATTTTTACAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAAT
** **
69444731 TGAGGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * * *
69444758 TAGGGGGTATTTTAGTAATTTTGCAAAC
1 CA-AGGGTATTTTGGTAATTTTACAAAT
* *
69444786 CACGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
69444807 GTAAATTAAA
Statistics
Matches: 270, Mismatches: 68, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
25 2 0.01
26 18 0.07
27 203 0.75
28 47 0.17
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:69444581 original size:81 final size:81
Alignment explanation
Indices: 69444465--69444620 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
69444455 ACAAATCAAG
* ** * * * *
69444465 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAA-ATTGAGGGTATTTCGG
1 GGTATTTTGGTAATTTTACAAATCAGGAGTATTTTGGTAATTCTACAATA-TAAGGGTATTTCAG
69444529 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
* **
69444546 GGTATTTTGGTAATTTTACAAA-CTAGGAGTGTTTTGGTAATTCTACCCTATAAGGGTATTTCAG
1 GGTATTTTGGTAATTTTACAAATC-AGGAGTATTTTGGTAATTCTACAATATAAGGGTATTTCAG
69444610 TAATTTCACAA
65 TAATTTCACAA
69444621 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.97
82 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGAGTATTTTGGTAATTCTACAATATAAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:69444737 original size:28 final size:28
Alignment explanation
Indices: 69444704--69444779 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
69444694 TCTATAAATC
* *
69444704 GAGGGTACTTTGGTAATTTTTACAAGTT-
1 GAGGGTA-TTTAGTAATTTTTACAAATTA
69444732 GAGGGTATTTCAGTAA-TTTTACAAATTA
1 GAGGGTATTT-AGTAATTTTTACAAATTA
*
69444760 GGGGGTATTTTAGTAATTTT
1 GAGGGTA-TTTAGTAATTTT
69444780 GCAAACCACG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 13 0.32
28 22 0.54
29 6 0.15
ACGTcount: A:0.28, C:0.05, G:0.24, T:0.43
Consensus pattern (28 bp):
GAGGGTATTTAGTAATTTTTACAAATTA
Found at i:69444807 original size:27 final size:28
Alignment explanation
Indices: 69444734--69444807 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
69444724 TACAAGTTGA
* * ** *
69444734 GGGTATTTCAGTAATTTTACAAATTAGG
1 GGGTATTTTAGTAATTTTGCAAACCAGC
69444762 GGGTATTTTAGTAATTTTGCAAACCA-C
1 GGGTATTTTAGTAATTTTGCAAACCAGC
69444789 GGGTATTTTAGTAATTTTG
1 GGGTATTTTAGTAATTTTG
69444808 TAAATTAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 19 0.46
28 22 0.54
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (28 bp):
GGGTATTTTAGTAATTTTGCAAACCAGC
Found at i:69444902 original size:27 final size:27
Alignment explanation
Indices: 69444819--69444891 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
69444809 AAATTAAAGT
69444819 ATTCTATAAATCGAGGGTAAAATGGTA
1 ATTCTATAAATCGAGGGTAAAATGGTA
* *
69444846 ATTCTATAAATCGAGGGTAGAACGGTA
1 ATTCTATAAATCGAGGGTAAAATGGTA
*
69444873 ATTCTATAAATCGGGGGTA
1 ATTCTATAAATCGAGGGTA
69444892 CTTTGGTAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.29
Consensus pattern (27 bp):
ATTCTATAAATCGAGGGTAAAATGGTA
Found at i:69445955 original size:16 final size:17
Alignment explanation
Indices: 69445922--69445958 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
69445912 TATTATATGT
69445922 TTTATTATATTAACATG
1 TTTATTATATTAACATG
*
69445939 TTTATTAT-TTTACATG
1 TTTATTATATTAACATG
69445955 TTTA
1 TTTA
69445959 ACCTTTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (17 bp):
TTTATTATATTAACATG
Found at i:69452286 original size:40 final size:40
Alignment explanation
Indices: 69452241--69452408 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
69452231 CGGAATATAA
69452241 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69452281 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
69452321 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
69452361 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69452401 CCGGATAT
1 CCGGATAT
69452409 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69460977 original size:46 final size:46
Alignment explanation
Indices: 69460910--69461080 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
69460900 AACCCGCCCC
*
69460910 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
*
69460956 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCACATCCA
* * * *
69461004 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
69461048 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
69461081 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 1 0.01
44 2 0.02
45 26 0.25
46 34 0.32
47 26 0.25
48 3 0.03
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
Found at i:69461073 original size:92 final size:93
Alignment explanation
Indices: 69460915--69461084 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
69460905 GCCCCTAAGT
*
69460915 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
69460980 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
69461008 GAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
69461072 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69461085 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 49 0.66
93 25 0.34
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:69466536 original size:93 final size:93
Alignment explanation
Indices: 69466421--69466591 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
69466411 GCCCCTAAGT
* *
69466421 GAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69466486 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
69466514 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69466579 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69466592 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:69466588 original size:46 final size:46
Alignment explanation
Indices: 69466416--69466588 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
69466406 AACCCGCCCC
* * * *
69466416 TAAGTGAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
69466462 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
69466510 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
69466555 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69466589 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:69468651 original size:42 final size:42
Alignment explanation
Indices: 69468547--69468651 Score: 104
Period size: 42 Copynumber: 2.5 Consensus size: 42
69468537 TATCGTATCA
* * * *
69468547 ATGCCATATCTCAAATATGGTCTTACATGAAATATCATATCG
1 ATGCCATATCCCAAAAATGGTCTTACACGAAATATCATACCG
* * ** * *
69468589 ACGCCATGTCCCTGACATGGTCTTATACGAAATCA-CATACCG
1 ATGCCATATCCCAAAAATGGTCTTACACGAAAT-ATCATACCG
69468631 ATGCCATATCCCAAAAATGGT
1 ATGCCATATCCCAAAAATGGT
69468652 GCCATATCCC
Statistics
Matches: 48, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAAAAATGGTCTTACACGAAATATCATACCG
Found at i:69468656 original size:19 final size:19
Alignment explanation
Indices: 69468632--69468670 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
69468622 CACATACCGA
69468632 TGCCATATCCCAAAAATGG
1 TGCCATATCCCAAAAATGG
69468651 TGCCATATCCCAAAAATGG
1 TGCCATATCCCAAAAATGG
69468670 T
1 T
69468671 CTTATTCGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (19 bp):
TGCCATATCCCAAAAATGG
Found at i:69473768 original size:29 final size:29
Alignment explanation
Indices: 69473735--69473799 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
69473725 GTGACGAGAT
69473735 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69473764 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
69473793 CGGCACT
1 TGGCACT
69473800 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:69473905 original size:2 final size:2
Alignment explanation
Indices: 69473900--69473932 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
69473890 GTGCGTACTC
69473900 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69473933 CTCCGATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:69484653 original size:29 final size:29
Alignment explanation
Indices: 69484523--69484645 Score: 228
Period size: 29 Copynumber: 4.2 Consensus size: 29
69484513 GTGACGAGAT
69484523 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
69484552 TGGCACTAAGTGTACATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69484581 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69484610 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
69484639 CGGCACT
1 TGGCACT
69484646 GGGTGTGCGA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:69484670 original size:58 final size:58
Alignment explanation
Indices: 69484524--69484682 Score: 203
Period size: 58 Copynumber: 2.7 Consensus size: 58
69484514 TGACGAGATT
* * * *
69484524 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTACATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
* *
69484582 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAC
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
** * * *
69484640 GGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCACTATGTGTGC
1 GGCACTAAGTGTGC-ATGCTCGAAAGATATGGCACTAAGTGTGC
69484683 GGGCTTAAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
58 90 0.99
59 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
Found at i:69484670 original size:87 final size:87
Alignment explanation
Indices: 69484523--69484682 Score: 223
Period size: 87 Copynumber: 1.8 Consensus size: 87
69484513 GTGACGAGAT
* * *
69484523 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTACATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACATGCTCGAAAGATATGGCACT
69484588 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCATGCTGGAAATATA
** * * *
69484610 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTAC-ATGCTCGAAAGATATGGCAC
*
69484674 TATGTGTGC
65 TAAGTGTGC
69484683 GGGCTTAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 62 0.98
88 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACATGCTCGAAAGATATGGCACT
AAGTGTGCATGCTGGAAATATA
Found at i:69484700 original size:87 final size:87
Alignment explanation
Indices: 69484523--69484711 Score: 220
Period size: 87 Copynumber: 2.2 Consensus size: 87
69484513 GTGACGAGAT
* * *
69484523 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTACATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACATGCTCGAAAGATATGGCACT
* *
69484588 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCAGGCTGGAAATACA
** * * *
69484610 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTAC-ATGCTCGAAAGATATGGCAC
* * * *
69484674 TATGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAAT-ACA
69484697 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
69484712 GAAATCGAGT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 4 0.05
87 81 0.94
88 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAATACA
Found at i:69484751 original size:2 final size:2
Alignment explanation
Indices: 69484746--69484786 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
69484736 GTGCGTACTC
69484746 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69484787 CTCCGATCGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:69486970 original size:32 final size:30
Alignment explanation
Indices: 69486894--69486975 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 30
69486884 GTATACAATT
* *
69486894 GTAACATAAATATTTAATTACTTTTTATTTAA
1 GTAA-ATAGATATTT-ATTACTTATTATTTAA
69486926 GTAAATAGATATTTATTACTTATTATTATTAA
1 GTAAATAGATATTTATTACTTATTA-T-TTAA
*
69486958 GTTAAA-ATATATTTATTA
1 G-TAAATAGATATTTATTA
69486976 ATTAAATAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
30 10 0.23
31 10 0.23
32 20 0.45
33 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (30 bp):
GTAAATAGATATTTATTACTTATTATTTAA
Found at i:69487406 original size:2 final size:2
Alignment explanation
Indices: 69487399--69487434 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
69487389 TTAATTAGTG
69487399 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
69487435 AGAAATGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:69487523 original size:17 final size:17
Alignment explanation
Indices: 69487501--69487537 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
69487491 AAAGAAAGAA
69487501 AAGAAAAAGGACAAACT
1 AAGAAAAAGGACAAACT
69487518 AAGAAAAAGGACAAACT
1 AAGAAAAAGGACAAACT
69487535 AAG
1 AAG
69487538 GGTTTAAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.65, C:0.11, G:0.19, T:0.05
Consensus pattern (17 bp):
AAGAAAAAGGACAAACT
Found at i:69496074 original size:44 final size:44
Alignment explanation
Indices: 69495990--69496074 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
69495980 TATGTAATCT
* * *
69495990 GAACTCATTGAGTTGTGTCTGAATTCATGATATTTGTGACATCA
1 GAACTCATTAAGTTGTGTCTGAATTCATGATATGTATGACATCA
*
69496034 GAACTCATTAAGTTGTGTCT-AAGTTCGTGATATGTATGACA
1 GAACTCATTAAGTTGTGTCTGAA-TTCATGATATGTATGACA
69496075 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (44 bp):
GAACTCATTAAGTTGTGTCTGAATTCATGATATGTATGACATCA
Found at i:69497095 original size:12 final size:12
Alignment explanation
Indices: 69497078--69497108 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
69497068 TAATCAAAAG
*
69497078 TGCCATGTTGCA
1 TGCCATGCTGCA
69497090 TGCCATGCTGCA
1 TGCCATGCTGCA
69497102 TGCCATG
1 TGCCATG
69497109 AAGTGAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.29, G:0.26, T:0.29
Consensus pattern (12 bp):
TGCCATGCTGCA
Found at i:69497337 original size:13 final size:15
Alignment explanation
Indices: 69497301--69497331 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
69497291 AAGCACACGG
69497301 GCGTGTGACTTGGCC
1 GCGTGTGACTTGGCC
69497316 GCGTGTGACTTGGCC
1 GCGTGTGACTTGGCC
69497331 G
1 G
69497332 TGTGACCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.26, G:0.42, T:0.26
Consensus pattern (15 bp):
GCGTGTGACTTGGCC
Found at i:69504370 original size:2 final size:2
Alignment explanation
Indices: 69504363--69504388 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
69504353 TGTGGTAAGA
69504363 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
69504389 GAGGAATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69509211 original size:50 final size:50
Alignment explanation
Indices: 69509136--69509232 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
69509126 ACTACTTGTG
*
69509136 ATAGTGTGATATCTCTCAACGAAATTGTTTTGCTAAGACAGAGATGAGTA
1 ATAGTGTGATATCTCTCAACGAAATTGTTTTGCTAAGACAAAGATGAGTA
69509186 ATAGTGTGATATCTCTCAACGAAATTGTTTTGCTAAGACAAAGATGA
1 ATAGTGTGATATCTCTCAACGAAATTGTTTTGCTAAGACAAAGATGA
69509233 CTTCCAACCG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (50 bp):
ATAGTGTGATATCTCTCAACGAAATTGTTTTGCTAAGACAAAGATGAGTA
Found at i:69519164 original size:27 final size:26
Alignment explanation
Indices: 69519134--69519197 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 26
69519124 TATTCAGTAT
* *
69519134 CAGTACAGTCTGGGCCTTAGCCCTATA
1 CAGTACAGTCT-GGCCTAAGCCCAATA
* *
69519161 CAGTAATAGTGTGGCCTAAGCCCAATA
1 CAGT-ACAGTCTGGCCTAAGCCCAATA
69519188 CAGTATCAGT
1 CAGTA-CAGT
69519198 ACCGTGTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.03
27 24 0.80
28 5 0.17
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
CAGTACAGTCTGGCCTAAGCCCAATA
Found at i:69519383 original size:27 final size:27
Alignment explanation
Indices: 69519348--69519412 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
69519338 AGCATAGCTG
* *
69519348 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAACAGTAAATATGGCAAAGCCA
* * *
69519375 CCAGTAACAGTGAATATGGCATAGTCA
1 CCAGTAACAGTAAATATGGCAAAGCCA
*
69519402 CCAAT-ACAGTA
1 CCAGTAACAGTA
69519413 CTTCCTCCAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.17
Consensus pattern (27 bp):
CCAGTAACAGTAAATATGGCAAAGCCA
Found at i:69519590 original size:27 final size:27
Alignment explanation
Indices: 69519548--69519747 Score: 199
Period size: 27 Copynumber: 7.4 Consensus size: 27
69519538 GAGCATAATC
* **
69519548 GTCATTTTACCATACAGGGATATTACA
1 GTCATTTTACCCTACAGGGGCATTACA
* * *
69519575 GTCATTTTATCCTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACA
**
69519602 GTCATTTTACCCTACAGGGGCATTATG
1 GTCATTTTACCCTACAGGGGCATTACA
*
69519629 GTTATTTTACCCTACAGGGGCATTAC-
1 GTCATTTTACCCTACAGGGGCATTACA
* * **
69519655 GATCATTTTACCCTATAGGGGTAACACA
1 G-TCATTTTACCCTACAGGGGCATTACA
* * *
69519683 ATCATTTTACCCTACAAGGGCATTA-T
1 GTCATTTTACCCTACAGGGGCATTACA
*
69519709 GATCATTTTACCCTACAGGGGCATTA-T
1 G-TCATTTTACCCTACAGGGGCATTACA
69519736 GATCATTTTACC
1 G-TCATTTTACC
69519748 TATTTTGGGG
Statistics
Matches: 145, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 144 0.99
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACA
Found at i:69519609 original size:54 final size:54
Alignment explanation
Indices: 69519549--69519747 Score: 238
Period size: 54 Copynumber: 3.7 Consensus size: 54
69519539 AGCATAATCG
* * * *
69519549 TCATTTTACCATACAGGGATATTACAGTCATTTTATCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAAGGGCATTACGA
* ** * *
69519603 TCATTTTACCCTACAGGGGCATTATGGTTATTTTACCCTACAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAAGGGCATTACGA
* ** * *
69519657 TCATTTTACCCTATAGGGGTAACACAATCATTTTACCCTACAAGGGCATTATGA
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAAGGGCATTACGA
* *
69519711 TCATTTTACCCTACAGGGGCATTA-TGATCATTTTACC
1 TCATTTTACCCTACAGGGGTATTACAG-TCATTTTACC
69519748 TATTTTGGGG
Statistics
Matches: 119, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
54 119 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAAGGGCATTACGA
Found at i:69522417 original size:42 final size:45
Alignment explanation
Indices: 69522313--69522469 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 45
69522303 TGTGTTATCG
69522313 TGTAAGACCAC-GTCTGGGATGTTGGCATCGACTTATGATTTGCA
1 TGTAAGACCACTGTCTGGGATGTTGGCATCGACTTATGATTTGCA
* *
69522357 TGTAAGACCACAT-T-TGGGATGTTGGCATCATAC-T-TGATTT-CC
1 TGTAAGACCAC-TGTCTGGGATGTTGGCATC-GACTTATGATTTGCA
** *
69522399 TGTAAGACC-CTGTCTGGGATAG-TGGTTTCGA-TATTTGA-TTGCA
1 TGTAAGACCACTGTCTGGGAT-GTTGGCATCGACT-TATGATTTGCA
**
69522442 TGTAAGACCAC-GTCTGGGACATTGGCAT
1 TGTAAGACCACTGTCTGGGATGTTGGCAT
69522470 TGTATGAGTT
Statistics
Matches: 91, Mismatches: 10, Indels: 25
0.72 0.08 0.20
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 24 0.26
43 32 0.35
44 28 0.31
45 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (45 bp):
TGTAAGACCACTGTCTGGGATGTTGGCATCGACTTATGATTTGCA
Found at i:69523468 original size:21 final size:21
Alignment explanation
Indices: 69523442--69523481 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
69523432 TTCCCACACG
69523442 GGCAGAAACACGGGCGTGTCA
1 GGCAGAAACACGGGCGTGTCA
*
69523463 GGCAGAGACACGGGCGTGT
1 GGCAGAAACACGGGCGTGT
69523482 GTCTCAGCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.23, G:0.42, T:0.10
Consensus pattern (21 bp):
GGCAGAAACACGGGCGTGTCA
Found at i:69536431 original size:20 final size:22
Alignment explanation
Indices: 69536406--69536458 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
69536396 ATGTTATGTA
69536406 GGTATCAATACTGCCTCT-A-T
1 GGTATCAATACTGCCTCTAAGT
* * *
69536426 GGTATCGATACTTCCTTTAAGT
1 GGTATCAATACTGCCTCTAAGT
69536448 GGTATCAATAC
1 GGTATCAATAC
69536459 CACGTGGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 15 0.56
21 1 0.04
22 11 0.41
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (22 bp):
GGTATCAATACTGCCTCTAAGT
Found at i:69538289 original size:2 final size:2
Alignment explanation
Indices: 69538282--69538306 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
69538272 TATCTCATCC
69538282 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
69538307 ACTTAATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69539818 original size:29 final size:29
Alignment explanation
Indices: 69539786--69539859 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
69539776 ATGGTCGCCC
* *
69539786 CCATCCTTTTTCATGATCGATGGTCGAAA
1 CCATCCTTTTTCATAATCGATGGTCAAAA
*
69539815 CCAT-CTCTTTTCTTTAATCGATGGTCAAAA
1 CCATCCT-TTTTC-ATAATCGATGGTCAAAA
*
69539845 CCATCCCTTTTCATA
1 CCATCCTTTTTCATA
69539860 TTCAATGGGC
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
28 2 0.05
29 11 0.30
30 23 0.62
31 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (29 bp):
CCATCCTTTTTCATAATCGATGGTCAAAA
Found at i:69543275 original size:38 final size:39
Alignment explanation
Indices: 69543224--69543345 Score: 140
Period size: 38 Copynumber: 3.0 Consensus size: 39
69543214 GATATGAAAT
*
69543224 GTGTAAGACCATGGTTGAAAGATACCATGGCAAC-CTGA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGATGA
*
69543262 GTGTAAGACCATGGTTGGAAGATACCATGGCAACGTGATATGA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAAC--G--ATGA
*
69543305 GATGAACAAGACCATGGTTGAAAGATACCATGGCAAC-ATGA
1 G-TG--TAAGACCATGGTTGAAAGATACCATGGCAACGATGA
69543346 CAGAAAATGA
Statistics
Matches: 72, Mismatches: 4, Indels: 13
0.81 0.04 0.15
Matches are distributed among these distances:
38 33 0.46
41 4 0.06
43 4 0.06
44 2 0.03
46 29 0.40
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.20
Consensus pattern (39 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACGATGA
Found at i:69543333 original size:46 final size:46
Alignment explanation
Indices: 69543266--69543390 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
69543256 ACCTGAGTGT
* * * *
69543266 AAGACCATGGTTGGAAGATACCATGGCAACGTGATATG-AGATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAAC
**
69543312 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAC
* * * *
69543358 AAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAGACCATGGTTGAAAGATACCATGGCAACATG
69543391 TCAAAGATAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 1 0.01
46 67 0.99
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.19
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAC
Found at i:69549355 original size:40 final size:40
Alignment explanation
Indices: 69549310--69549476 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
69549300 CGGAATATAA
69549310 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69549350 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
69549390 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69549430 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
*
69549469 CCAGATAT
1 CCGGATAT
69549477 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69555761 original size:20 final size:21
Alignment explanation
Indices: 69555722--69555761 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
69555712 AAGGACTATT
*
69555722 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
69555743 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
69555762 TTGAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:69563735 original size:21 final size:21
Alignment explanation
Indices: 69563711--69563756 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
69563701 AAATGCAGAC
69563711 AAAACCACTTAAAATCTTTTT
1 AAAACCACTTAAAATCTTTTT
* * * *
69563732 AAAACTACTTATATTTTTTTT
1 AAAACCACTTAAAATCTTTTT
69563753 AAAA
1 AAAA
69563757 AGGTGGGAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (21 bp):
AAAACCACTTAAAATCTTTTT
Found at i:69565737 original size:110 final size:110
Alignment explanation
Indices: 69565527--69565738 Score: 232
Period size: 110 Copynumber: 1.9 Consensus size: 110
69565517 AATATACTGG
* * ** *
69565527 GGATAACCCCAAATGACCGTCCTACTTGAAACGATAGATTATTCCTCTTCTGGCTATGGATTATG
1 GGATAACCCCAAATGACCATCCTACTTGAAACGATAGATGATTCCTCTTCTAACTATGGATCATG
* * * *
69565592 GATCCTTCCTATATCATATTTGGATCCTATGTTCCACACCACTAA
66 GATCCTCCCTATACCATATTGGGATCATATGTTCCACACCACTAA
* * * * * *
69565637 GGATAACCCCGATTGACCAT-CTCACTTGAACCGATAGATGATTCTTCTTCTAACTGTGGATCGT
1 GGATAACCCCAAATGACCATCCT-ACTTGAAACGATAGATGATTCCTCTTCTAACTATGGATCAT
*
69565701 GGATCCTCCCTGA-ACCATATTGGGTTCATA-GATTCCAC
65 GGATCCTCCCT-ATACCATATTGGGATCATATG-TTCCAC
69565739 GCCATTGGGT
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
109 3 0.04
110 79 0.95
111 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (110 bp):
GGATAACCCCAAATGACCATCCTACTTGAAACGATAGATGATTCCTCTTCTAACTATGGATCATG
GATCCTCCCTATACCATATTGGGATCATATGTTCCACACCACTAA
Found at i:69565831 original size:20 final size:20
Alignment explanation
Indices: 69565806--69565850 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
69565796 AGACTGCCTA
69565806 GGGATCGCATATCCTCCCTG
1 GGGATCGCATATCCTCCCTG
69565826 GGGATCGCATATCCTCCCTG
1 GGGATCGCATATCCTCCCTG
69565846 GGGAT
1 GGGAT
69565851 TAGCGCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.16, C:0.31, G:0.29, T:0.24
Consensus pattern (20 bp):
GGGATCGCATATCCTCCCTG
Found at i:69575978 original size:40 final size:40
Alignment explanation
Indices: 69575781--69575964 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
69575771 CGAATGATGT
* * *
69575781 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
69575821 CCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
69575860 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
69575899 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
69575940 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
69575965 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 39 0.31
40 77 0.62
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:69575986 original size:79 final size:78
Alignment explanation
Indices: 69575781--69575997 Score: 223
Period size: 79 Copynumber: 2.7 Consensus size: 78
69575771 CGAATGATGT
* *
69575781 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
69575844 CGTGCGAGTTACTAAA
63 CGTGCGAGTTACTAAA
* * *
69575860 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCAT
69575921 TCTGTGCGAGTTACTATAA
62 TC-GTGCGAGTTACTA-AA
* **
69575940 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA-ACTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGA-TCCGAAGG
69575998 TACGTGATTC
Statistics
Matches: 115, Mismatches: 11, Indels: 24
0.77 0.07 0.16
Matches are distributed among these distances:
78 3 0.03
79 67 0.58
80 45 0.39
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTCGT
GCGAGTTACTAAA
Found at i:69583997 original size:40 final size:40
Alignment explanation
Indices: 69583805--69583990 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
69583795 TCGAATGATG
* * *
69583805 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
69583845 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69583885 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69583925 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69583966 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69583991 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69583997 original size:80 final size:80
Alignment explanation
Indices: 69583805--69584023 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
69583795 TCGAATGATG
* * **
69583805 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
69583869 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
69583885 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
69583947 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
69583966 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
69584024 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Done.