Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 226 of 438
Found at i:69590028 original size:51 final size:49
Alignment explanation
Indices: 69589973--69590109 Score: 144
Period size: 51 Copynumber: 2.9 Consensus size: 49
69589963 CTACCACATA
* *
69589973 ACATGTAACACATCCATAATGAACTCGGACCTCTTAACGAGCTCAGATG
1 ACATGTAACGCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATG
* * * *
69590022 TTACATG-AATTGCATCCATCATGAACTCGGACCACTCAACGAGCTCGGATG
1 --ACATGTAA-CGCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATG
69590073 -C---T--CGCATCCATAATGAACTCGGACCTCTCAACGAGCT
1 ACATGTAACGCATCCATAATGAACTCGGACCTCTCAACGAGCT
69590110 TGGATGCCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
43 32 0.43
48 1 0.01
50 2 0.03
51 40 0.53
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (49 bp):
ACATGTAACGCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATG
Found at i:69590094 original size:43 final size:43
Alignment explanation
Indices: 69590033--69590116 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
69590023 TACATGAATT
*
69590033 GCATCCATCATGAACTCGGACCACTCAACGAGCTCGGATGCTC
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTC
* *
69590076 GCATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGC
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
69590117 CACATATCTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.20
Consensus pattern (43 bp):
GCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTC
Found at i:69592357 original size:17 final size:17
Alignment explanation
Indices: 69592337--69592378 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
69592327 TTAGATCTAA
*
69592337 TTACATTTTCCATTTTT
1 TTACATTTACCATTTTT
69592354 TTACA-TTACCATTTTT
1 TTACATTTACCATTTTT
69592370 TTATCATTT
1 TTA-CATTT
69592379 CAATTAATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 13 0.59
17 7 0.32
18 2 0.09
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (17 bp):
TTACATTTACCATTTTT
Found at i:69596166 original size:36 final size:36
Alignment explanation
Indices: 69596126--69596196 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
69596116 CCCAAGGCTG
*
69596126 AGCACCACCCAAAAATCCTACCAGAGGAAAAATATA
1 AGCACCACCCAAAAATCCTACAAGAGGAAAAATATA
* * *
69596162 AGCACCACCCAGAATTCCTAGAAGAGGAAAAATAT
1 AGCACCACCCAAAAATCCTACAAGAGGAAAAATAT
69596197 GCAAGGTAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.48, C:0.25, G:0.14, T:0.13
Consensus pattern (36 bp):
AGCACCACCCAAAAATCCTACAAGAGGAAAAATATA
Found at i:69600028 original size:18 final size:18
Alignment explanation
Indices: 69599978--69600029 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
69599968 GAAATTCTAT
69599978 ATCCTTCAAGGATTTTAA
1 ATCCTTCAAGGATTTTAA
* **
69599996 ACCCTT-TTGGAATTTTAA
1 ATCCTTCAAGG-ATTTTAA
69600014 ATCCTTCAAGGATTTT
1 ATCCTTCAAGGATTTT
69600030 CATATAAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (18 bp):
ATCCTTCAAGGATTTTAA
Found at i:69602141 original size:93 final size:93
Alignment explanation
Indices: 69601982--69602152 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
69601972 GGATGGTTGA
* *
69601982 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
69602047 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
69602075 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
69602140 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69602153 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:69602155 original size:46 final size:46
Alignment explanation
Indices: 69601986--69602157 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
69601976 GGTTGAGCAT
* * *
69601986 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
69602032 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
69602077 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
69602125 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69602158 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 2 0.02
46 60 0.57
47 28 0.27
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:69605587 original size:21 final size:21
Alignment explanation
Indices: 69605561--69605628 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
69605551 CTGTTTAACC
*
69605561 CTTATAGGTTTCCGTTCAGCT
1 CTTATAGGTTTCCGTTCAGCA
* * *
69605582 CTTATAAGCTTT-CGTTCAACC
1 CTTAT-AGGTTTCCGTTCAGCA
* * *
69605603 CTTATGGGTTTCTGTTTAGCA
1 CTTATAGGTTTCCGTTCAGCA
69605624 CTTAT
1 CTTAT
69605629 GTGCTTCTGT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
20 4 0.11
21 27 0.75
22 5 0.14
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (21 bp):
CTTATAGGTTTCCGTTCAGCA
Found at i:69605629 original size:21 final size:20
Alignment explanation
Indices: 69605602--69605656 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 20
69605592 TTCGTTCAAC
*
69605602 CCTTATGGGTTTCTGTTTAG
1 CCTTATGGGCTTCTGTTTAG
*
69605622 CACTTATGTGCTTCTGTTTAG
1 C-CTTATGGGCTTCTGTTTAG
69605643 CCTT-TGGGCTTCTG
1 CCTTATGGGCTTCTG
69605657 AAAACGATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.29
20 4 0.13
21 18 0.58
ACGTcount: A:0.09, C:0.20, G:0.24, T:0.47
Consensus pattern (20 bp):
CCTTATGGGCTTCTGTTTAG
Found at i:69610158 original size:25 final size:25
Alignment explanation
Indices: 69610129--69610308 Score: 86
Period size: 25 Copynumber: 7.3 Consensus size: 25
69610119 CTCTCTCTAT
69610129 CGAGCCATATAACAGGAAGCTCATG
1 CGAGCCATATAACAGGAAGCTCATG
* ** *
69610154 TGAGCTGTATAACAGGAAGCTTAT-
1 CGAGCCATATAACAGGAAGCTCATG
* * ** *
69610178 CCAGGCTATATAATGGGAAGCTCATA
1 CGA-GCCATATAACAGGAAGCTCATG
** *
69610204 AAAGCCATA-ATCAGGAAGCTCATG
1 CGAGCCATATAACAGGAAGCTCATG
* * *
69610228 CGAGCCA-ATAACGGGTAGCT-GTG
1 CGAGCCATATAACAGGAAGCTCATG
* * *
69610251 AAGAGCCAT-TAATCAAGACGCTC-TG
1 -CGAGCCATATAA-CAGGAAGCTCATG
* *
69610276 -GATAGCCATATATCGGGAAGCTCATG
1 CG--AGCCATATAACAGGAAGCTCATG
69610302 CGAGCCA
1 CGAGCCA
69610309 ATATCGAGAA
Statistics
Matches: 111, Mismatches: 32, Indels: 24
0.66 0.19 0.14
Matches are distributed among these distances:
23 4 0.04
24 34 0.31
25 67 0.60
26 5 0.05
27 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (25 bp):
CGAGCCATATAACAGGAAGCTCATG
Found at i:69614438 original size:16 final size:16
Alignment explanation
Indices: 69614419--69614449 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69614409 CTTCTTCACT
69614419 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
69614435 TACTTACTTACTTAA
1 TACTCACTTACTTAA
69614450 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:69614455 original size:20 final size:20
Alignment explanation
Indices: 69614416--69614455 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
69614406 AAACTTCTTC
* *
69614416 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
69614436 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
69614456 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:69614847 original size:108 final size:110
Alignment explanation
Indices: 69614688--69614888 Score: 253
Period size: 108 Copynumber: 1.8 Consensus size: 110
69614678 ATCCTTTTGA
* * * ** * *
69614688 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTCGACATGGTATTACATGATATAATTACCTTATAAACCTCACCAAC
*
69614751 TGCCATGCCTTGGCATGGTCTTAAATGGGACATTTGCCTTATGGT
66 TGCCATGCCTTAGCATGGTCTTAAATGGGACATTTGCCTTATGGT
* * * * **
69614796 AACTTATCAATGCCATGTCTTGACATGGTATTACATGATTTAATTATCTTATAAACCTTTCCAAC
1 AACTTACCAATGCCATGTCTCGACATGGTATTACATGATATAATTACCTTATAAACCTCACCAAC
*
69614861 TGCCATGCCTTAGCATGGTCTTACATGG
66 TGCCATGCCTTAGCATGGTCTTAAATGG
69614889 TATCCTTAAA
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
108 44 0.58
109 6 0.08
110 26 0.34
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTATTACATGATATAATTACCTTATAAACCTCACCAAC
TGCCATGCCTTAGCATGGTCTTAAATGGGACATTTGCCTTATGGT
Found at i:69624006 original size:13 final size:13
Alignment explanation
Indices: 69623988--69624012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69623978 TATGTGATAT
69623988 GTGTGAAAATTTC
1 GTGTGAAAATTTC
69624001 GTGTGAAAATTT
1 GTGTGAAAATTT
69624013 TATTGTTTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:69628521 original size:20 final size:21
Alignment explanation
Indices: 69628482--69628521 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
69628472 AAGGGCTATT
*
69628482 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
69628503 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
69628522 TTGAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:69629424 original size:49 final size:48
Alignment explanation
Indices: 69629360--69629537 Score: 162
Period size: 49 Copynumber: 3.7 Consensus size: 48
69629350 GTTGTGCGTT
* * *
69629360 AGTGTAAGACTTGTCTGGGACATGGCATCAACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGCC
* ** * * *
69629409 AGTGTAAGACCTGTCTAGGACACAGCATCGACCTCAATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAAAGCC
* ** **
69629458 AATGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGCC
* *
69629505 AGTGTAAAACCATGTCTGGGACATGGCGTCGAC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGAC
69629538 ATCTTATCCT
Statistics
Matches: 103, Mismatches: 23, Indels: 7
0.77 0.17 0.05
Matches are distributed among these distances:
47 14 0.14
48 21 0.20
49 68 0.66
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGCC
Found at i:69640555 original size:18 final size:18
Alignment explanation
Indices: 69640532--69640568 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
69640522 AAGGGAACCA
69640532 AAAGTACTAGTAATAACT
1 AAAGTACTAGTAATAACT
69640550 AAAGTACTAGTAATAACT
1 AAAGTACTAGTAATAACT
69640568 A
1 A
69640569 TCTTTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.27
Consensus pattern (18 bp):
AAAGTACTAGTAATAACT
Found at i:69641669 original size:21 final size:21
Alignment explanation
Indices: 69641635--69641676 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
69641625 ATTTGGTCCG
* * *
69641635 TTTTGTCTCTTTTTGGCTCTT
1 TTTTGGCTCCTTTTGACTCTT
69641656 TTTTGGCTCCTTTTGACTCTT
1 TTTTGGCTCCTTTTGACTCTT
69641677 GGTGCTCTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.21, G:0.14, T:0.62
Consensus pattern (21 bp):
TTTTGGCTCCTTTTGACTCTT
Found at i:69642521 original size:48 final size:48
Alignment explanation
Indices: 69642391--69642616 Score: 223
Period size: 48 Copynumber: 4.8 Consensus size: 48
69642381 TTATGTATGG
* * *
69642391 TCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCATCGATATGTA-A
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAT-AAGA
** * *
69642439 TTTCGTGTAAGACCATAG-CTAGG-C-T---ATTGGCATCGATATAAGA
1 TCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATAAGA
* * * * *
69642482 TCCCATGTAAAACCATGTCTGAGACATGGAATTGGCATCGATCTACGA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAAGA
* **
69642530 TCCAATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATTTGA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAAGA
* * *
69642578 TCCCATGTAAGACCATATCCGGGATATGGCATTGGCATC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
69642617 CTACTATGTT
Statistics
Matches: 146, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
42 2 0.01
43 29 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 110 0.75
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAAGA
Found at i:69659227 original size:19 final size:17
Alignment explanation
Indices: 69659187--69659230 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
69659177 TATATAATAG
*
69659187 AATTTTTTAAATTATTT
1 AATTTTTTAAATTATGT
*
69659204 TATTTTTATAAAATTATGT
1 AATTTTT-T-AAATTATGT
69659223 AATTTTTT
1 AATTTTTT
69659231 TTAATTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 6 0.27
18 2 0.09
19 14 0.64
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
AATTTTTTAAATTATGT
Found at i:69659288 original size:17 final size:18
Alignment explanation
Indices: 69659248--69659288 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
69659238 TATAAATATC
69659248 TTATT-TTAAATTATTTA
1 TTATTATTAAATTATTTA
*
69659265 TCA-TATTAAATTATTT-
1 TTATTATTAAATTATTTA
69659281 TTATTATT
1 TTATTATT
69659289 TTTATAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATTATTAAATTATTTA
Found at i:69659960 original size:6 final size:7
Alignment explanation
Indices: 69659943--69659969 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
69659933 TAATATATTT
69659943 TTTTTCA
1 TTTTTCA
69659950 TTTTTCA
1 TTTTTCA
69659957 TTTTTCA
1 TTTTTCA
69659964 TTTTTC
1 TTTTTC
69659970 TTTCTTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTTCA
Found at i:69675426 original size:20 final size:20
Alignment explanation
Indices: 69675401--69675438 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
69675391 GTTTAGTGGA
69675401 AAAAATTTTCT-AAGTTTTGT
1 AAAAATTTT-TAAAGTTTTGT
69675421 AAAAATTTTTAAAGTTTT
1 AAAAATTTTTAAAGTTTT
69675439 CGGTTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (20 bp):
AAAAATTTTTAAAGTTTTGT
Found at i:69682992 original size:35 final size:35
Alignment explanation
Indices: 69682953--69683117 Score: 181
Period size: 35 Copynumber: 4.6 Consensus size: 35
69682943 CCATGGAAAG
69682953 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
* *
69682988 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
69683023 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * * *
69683063 T-AAAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGT
**
69683097 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
69683118 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
33 1 0.01
34 11 0.10
35 69 0.61
36 2 0.02
38 3 0.03
39 14 0.12
40 13 0.12
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:69683105 original size:74 final size:75
Alignment explanation
Indices: 69682957--69683122 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
69682947 GGAAAGTGTG
** *
69682957 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
69683017 CTGAGCTGTG
66 CCGAGCTGAA
69683027 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
69683090 ACCGAGTTGAA
65 ACCGAGCTGAA
69683101 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
69683123 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:69690590 original size:74 final size:75
Alignment explanation
Indices: 69690442--69690607 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
69690432 GAAAAGTGTG
** *
69690442 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
69690502 CTGAGCTGTG
66 CCGAGCTGAA
69690512 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
69690575 ACCGAGTTGAA
65 ACCGAGCTGAA
69690586 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
69690608 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:69690605 original size:35 final size:35
Alignment explanation
Indices: 69690442--69690605 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
69690432 GAAAAGTGTG
* **
69690442 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
69690477 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
69690512 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGAA
* *
69690551 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
69690586 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
69690606 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
34 11 0.10
35 73 0.64
38 2 0.02
39 17 0.15
40 11 0.10
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.34
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:69693567 original size:87 final size:87
Alignment explanation
Indices: 69693421--69693658 Score: 338
Period size: 87 Copynumber: 2.7 Consensus size: 87
69693411 TTTGAATTCA
*
69693421 GTGAAT-TCATCAAGTTCATCTCAATAGGACTACCCAAACTCTAGGATATGAACTCATTAAGAGT
1 GTGAATAT-ATCAAGTTCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAGAGT
69693485 AATAAATTCAATCTCACATATTG
65 AATAAATTCAATCTCACATATTG
* * *
69693508 GTGAATATATCAAGTTCATCTCAATAGGACCACCCAAACTTTGGGATATGAACTCATTAAGAGAA
1 GTGAATATATCAAGTTCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAGAGTA
*
69693573 ATAAATTCAATCTCACATGTTG
66 ATAAATTCAATCTCACATATTG
* * * * *
69693595 GTGAATATATCAA-ATCTGTTTTAATAGGACCACCCAAA-TCCTAGGATATGAATTCATTAAGAG
1 GTGAATATATCAAGTTC-ATCTCAATAGGACCACCCAAACT-CTAGGATATGAACTCATTAAGAG
69693658 T
64 T
69693659 GAGAACTCAA
Statistics
Matches: 135, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
86 3 0.02
87 131 0.97
88 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (87 bp):
GTGAATATATCAAGTTCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAGAGTA
ATAAATTCAATCTCACATATTG
Found at i:69699067 original size:12 final size:11
Alignment explanation
Indices: 69699039--69699072 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
69699029 AGTCAAATTA
69699039 ATTATTTTA-T
1 ATTATTTTATT
69699049 ATTATTTTATT
1 ATTATTTTATT
69699060 ACTTATTTTATT
1 A-TTATTTTATT
69699072 A
1 A
69699073 GGAGAGGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 9 0.41
11 2 0.09
12 11 0.50
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:69699216 original size:177 final size:176
Alignment explanation
Indices: 69698920--69699271 Score: 623
Period size: 177 Copynumber: 2.0 Consensus size: 176
69698910 CAAAATCTGG
* * *
69698920 TCTCTCTTTCTCTCTCTTTCTGATGCGTTTGAGGTTTACATCATATTTTGTGATTTCTGTGAAGA
1 TCTCTCTTTCTCTCTCTCTCTAATGCATTTGAGGTTTACATCATATTTTGTGATTTCTGTGAAGA
*
69698985 GTTGAAATACTTCATTTCATCTAGGTGAAAGGTTTTATGCTAGAAGTCAAATTAATTATTTTATA
66 GTTGAAATACTTCATTTCATCTAGGTGAAAGGTTTTATGCTAGAAGTCAAATTAATTA-TTTAGA
* *
69699050 TTATTTTATTACTTATTTTATTAGGAGAGGTATTAGGAGTTCAATTC
130 TTAATTTATTACTTATTTTATTAGGAGAAGTATTAGGAGTTCAATTC
69699097 TCTCTCTTTCTCTCTCTCTCTAATGCATTTGAGGTTTACATCATATTTTGTGATTTCTGTGAAGA
1 TCTCTCTTTCTCTCTCTCTCTAATGCATTTGAGGTTTACATCATATTTTGTGATTTCTGTGAAGA
*
69699162 GTTGAAATACTTCATTTCATCTAGGTGAAAGGTTTTATGTTAGAAGTCAAATTAATTATTTAGAT
66 GTTGAAATACTTCATTTCATCTAGGTGAAAGGTTTTATGCTAGAAGTCAAATTAATTATTTAGAT
*
69699227 TAATTTATTACTTATTTTATTAGTAGAAGTATTAGGAGTTCAATT
131 TAATTTATTACTTATTTTATTAGGAGAAGTATTAGGAGTTCAATT
69699272 GAAAGTATCT
Statistics
Matches: 167, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
176 48 0.29
177 119 0.71
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.46
Consensus pattern (176 bp):
TCTCTCTTTCTCTCTCTCTCTAATGCATTTGAGGTTTACATCATATTTTGTGATTTCTGTGAAGA
GTTGAAATACTTCATTTCATCTAGGTGAAAGGTTTTATGCTAGAAGTCAAATTAATTATTTAGAT
TAATTTATTACTTATTTTATTAGGAGAAGTATTAGGAGTTCAATTC
Found at i:69706941 original size:14 final size:15
Alignment explanation
Indices: 69706922--69706950 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
69706912 GTAAATACTT
69706922 CTATTTT-GAGAAGA
1 CTATTTTGGAGAAGA
69706936 CTATTTTGGAGAAGA
1 CTATTTTGGAGAAGA
69706951 AAATACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (15 bp):
CTATTTTGGAGAAGA
Found at i:69710582 original size:33 final size:32
Alignment explanation
Indices: 69710544--69710636 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 32
69710534 GACTGAGTGG
*
69710544 GAGTGTTTGGTTGTTGGACAGGAGCTAGAATGT
1 GAGTGTTTGGTTGCTGGACAGGAGCT-GAATGT
69710577 GAGTGTTTGGTTGCTGGACAGGAGCTGAAATGT
1 GAGTGTTTGGTTGCTGGACAGGAGCTG-AATGT
69710610 GAGTGTTTGGTTGCTGGACAGGAGCTG
1 GAGTGTTTGGTTGCTGGACAGGAGCTG
69710637 GAATCTCAAG
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 1 0.02
33 57 0.98
ACGTcount: A:0.19, C:0.09, G:0.41, T:0.31
Consensus pattern (32 bp):
GAGTGTTTGGTTGCTGGACAGGAGCTGAATGT
Found at i:69719691 original size:23 final size:23
Alignment explanation
Indices: 69719656--69719730 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
69719646 AATTACTAAT
* * * *
69719656 TTGCACTGAAGTGTCACTTTCAA
1 TTGCACCGGAGTGCCACTGTCAA
* *
69719679 TTGCACCGGAGTGCCTCTGTCAG
1 TTGCACCGGAGTGCCACTGTCAA
69719702 TTGCACCGGAGTGCCA-TGATCAA
1 TTGCACCGGAGTGCCACTG-TCAA
69719725 TTGCAC
1 TTGCAC
69719731 AGAAATTTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 2 0.05
23 41 0.95
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (23 bp):
TTGCACCGGAGTGCCACTGTCAA
Found at i:69722113 original size:40 final size:40
Alignment explanation
Indices: 69722068--69722234 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
69722058 CGGAATATAA
69722068 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69722108 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
69722148 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTA-A
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
69722187 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69722227 CCGGATAT
1 CCGGATAT
69722235 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 31 0.30
40 74 0.70
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69728415 original size:26 final size:26
Alignment explanation
Indices: 69728379--69728432 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
69728369 CTAGTTCTAG
* *
69728379 AATGATTCAAAAGTCTGCTGAGTCAA
1 AATGATTCAAAAGTCTACTAAGTCAA
69728405 AATGATTCAAAAGTCTACTAAGTCAA
1 AATGATTCAAAAGTCTACTAAGTCAA
69728431 AA
1 AA
69728433 GCTGGATAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (26 bp):
AATGATTCAAAAGTCTACTAAGTCAA
Found at i:69728858 original size:27 final size:28
Alignment explanation
Indices: 69728796--69728861 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
69728786 TGGTTTTCTT
* * *
69728796 ACACAAGTTGTGATACTTGAATTTGCTC
1 ACACAAGCTGTGATACTTGAAGTAGCTC
* *
69728824 ACGCAAGCTGTGATATTTG-AGTAGCTC
1 ACACAAGCTGTGATACTTGAAGTAGCTC
69728851 ACACAAGCTGT
1 ACACAAGCTGT
69728862 AGGTTAGGTT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 16 0.50
28 16 0.50
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (28 bp):
ACACAAGCTGTGATACTTGAAGTAGCTC
Found at i:69730015 original size:10 final size:10
Alignment explanation
Indices: 69729992--69730041 Score: 93
Period size: 10 Copynumber: 5.1 Consensus size: 10
69729982 TAATGAAGAA
69729992 AACACTTTTT
1 AACACTTTTT
69730002 -ACACTTTTT
1 AACACTTTTT
69730011 AACACTTTTT
1 AACACTTTTT
69730021 AACACTTTTT
1 AACACTTTTT
69730031 AACACTTTTT
1 AACACTTTTT
69730041 A
1 A
69730042 CCTTATTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.23
10 30 0.77
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (10 bp):
AACACTTTTT
Found at i:69732178 original size:20 final size:21
Alignment explanation
Indices: 69732153--69732196 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
69732143 TAGTTCAACG
*
69732153 GGTAAGAAAAGG-AATGGCAT
1 GGTAAGAAAAGGAAATGGAAT
*
69732173 GGTAAGTAAAGGAAATGGAAT
1 GGTAAGAAAAGGAAATGGAAT
69732194 GGT
1 GGT
69732197 TCATGATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.43, C:0.02, G:0.36, T:0.18
Consensus pattern (21 bp):
GGTAAGAAAAGGAAATGGAAT
Found at i:69740809 original size:23 final size:23
Alignment explanation
Indices: 69740778--69740826 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
69740768 AACGTAAGTA
*
69740778 AAAATGATGCATTATTTATATAC
1 AAAACGATGCATTATTTATATAC
69740801 AAAACGATGCATTATTTATATAC
1 AAAACGATGCATTATTTATATAC
69740824 AAA
1 AAA
69740827 CTTATCTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35
Consensus pattern (23 bp):
AAAACGATGCATTATTTATATAC
Found at i:69744570 original size:40 final size:40
Alignment explanation
Indices: 69744511--69744602 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
69744501 TATTCGGATG
* *
69744511 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-CT
**
69744551 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
69744591 ATATCC-GGCTAA
1 ATATCCGGGCTAA
69744603 ATCCTGAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
39 6 0.13
40 39 0.83
41 2 0.04
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
Found at i:69747209 original size:42 final size:42
Alignment explanation
Indices: 69747149--69747244 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
69747139 AAGCCCATGG
* * * *
69747149 CACACGCCCATGCTTGAGGCTGTGTCATCGACACGGCTGAGA
1 CACACGCCCGTGCCTGAGGCCGTGTCATCGACACGACTGAGA
*
69747191 CACACGCCCGTGCCTGAGGCCGTGTCATCGACATGACTGAGA
1 CACACGCCCGTGCCTGAGGCCGTGTCATCGACACGACTGAGA
69747233 CACACGCCCGTG
1 CACACGCCCGTG
69747245 TCTCTACCCG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.17
Consensus pattern (42 bp):
CACACGCCCGTGCCTGAGGCCGTGTCATCGACACGACTGAGA
Found at i:69749559 original size:50 final size:50
Alignment explanation
Indices: 69749483--69749579 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
69749473 TTTGGACAGC
* *
69749483 CCACTAAGGAAGGAAGGAGCCTAACCGTCCACTTGAGGTGCCTAAACTAT
1 CCACTAAGGAAGGAAGGAGCCCAACCGTCCACTTGAGGTGCCCAAACTAT
*
69749533 CCACTAAAGG-AGGAATGAGCCCAACCGTCCACTTGAGGTGCCCAAAC
1 CCACT-AAGGAAGGAAGGAGCCCAACCGTCCACTTGAGGTGCCCAAAC
69749580 CGTCCATGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 39 0.91
51 4 0.09
ACGTcount: A:0.32, C:0.29, G:0.24, T:0.15
Consensus pattern (50 bp):
CCACTAAGGAAGGAAGGAGCCCAACCGTCCACTTGAGGTGCCCAAACTAT
Found at i:69753472 original size:46 final size:46
Alignment explanation
Indices: 69753419--69753594 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
69753409 TATTTGGGCA
69753419 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * *
69753465 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
69753512 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
69753558 CCCGAGCTCGTTGAGTTAAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69753595 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.60
47 31 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:69753574 original size:93 final size:93
Alignment explanation
Indices: 69753415--69753587 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
69753405 GGGATATTTG
* *
69753415 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
* *
69753480 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTAAGTCCGAGTTCGTGAGATGTAACTA
* *
69753508 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69753573 TTAAGTCCGAGTTCG
66 TTAAGTCCGAGTTCG
69753588 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTAAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69757132 original size:15 final size:15
Alignment explanation
Indices: 69757093--69757171 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
69757083 GTATCTTGGG
*
69757093 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
69757108 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
69757123 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
69757137 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
69757152 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
69757166 TTTCTT
1 TTTCTT
69757172 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:69757156 original size:29 final size:29
Alignment explanation
Indices: 69757084--69757170 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
69757074 CATAGTATCG
* * * *
69757084 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
69757114 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
69757143 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
69757171 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:69759143 original size:46 final size:46
Alignment explanation
Indices: 69759090--69759265 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
69759080 TATTTGGGCA
*
69759090 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * *
69759136 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
69759183 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
69759229 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69759266 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.60
47 31 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:69759245 original size:93 final size:93
Alignment explanation
Indices: 69759086--69759258 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
69759076 GGGATATTTG
* *
69759086 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
69759151 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
69759179 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69759244 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
69759259 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69765569 original size:40 final size:40
Alignment explanation
Indices: 69765508--69765650 Score: 128
Period size: 40 Copynumber: 3.6 Consensus size: 40
69765498 TTGGAATGAT
* *
69765508 ATCCGGGCTAAGTCCCGAAGGCAATT-ATGCTAG-TAATTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTAA-TAC
* * * *
69765548 ATCCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTAATAC
* ** * ** *
69765588 ATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTAATAC
*
69765628 ATCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
69765651 AACGTGCGAA
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.04
40 80 0.94
41 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTAATAC
Found at i:69765640 original size:80 final size:80
Alignment explanation
Indices: 69765506--69765659 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
69765496 CATTGGAATG
* * ** *
69765506 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTACATCCGGGCTAAGACCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCAAAGGCA
**
69765571 TTCGTGCGAGTTGAT
66 AACGTGCGAGTTGAT
** * * * *
69765586 ATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCAAAGGCA
69765651 AACGTGCGA
66 AACGTGCGA
69765660 ATCACTATAA
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCAAAGGCA
AACGTGCGAGTTGAT
Found at i:69765674 original size:40 final size:40
Alignment explanation
Indices: 69765630--69765727 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 40
69765620 GTTACCAAAT
*
69765630 CCGGGTTAAGACCCGAAGGCAAACGTGCGAATCACTATAA
1 CCGGGTTAAGACCCGAAGGCAAACGAGCGAATCACTATAA
* * * * * * *
69765670 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCACTATAT
1 CCGGGTTAAGACCCGAAGGCAAACGAGCGAATCACTATAA
69765710 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
69765728 TACGTGATTC
Statistics
Matches: 45, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
39 11 0.24
40 34 0.76
ACGTcount: A:0.31, C:0.27, G:0.27, T:0.16
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCAAACGAGCGAATCACTATAA
Found at i:69767596 original size:43 final size:42
Alignment explanation
Indices: 69767472--69767625 Score: 179
Period size: 43 Copynumber: 3.6 Consensus size: 42
69767462 TATGTGTTAT
* *
69767472 CGTGTAAAACCACGTCTGGGACGTTGGCATCG-ACTTATGATTTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGA-TTA
* * *
69767516 TGTGTAAGACCACGTCTGGGACGTTGGGATCGTATTTGATTC
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTA
69767558 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTA
*
69767601 CATGTAAGACCACGTCTGGGACGTT
1 CGTGTAAGACCACGTCTGGGACGTT
69767626 TGCGTTTATG
Statistics
Matches: 96, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 33 0.34
44 32 0.33
45 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTA
Found at i:69770406 original size:48 final size:48
Alignment explanation
Indices: 69770344--69770528 Score: 334
Period size: 48 Copynumber: 3.9 Consensus size: 48
69770334 TATATATGTG
* *
69770344 TGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
69770392 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
69770440 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
69770488 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
69770529 GTGTGTATAT
Statistics
Matches: 133, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 133 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:69770724 original size:37 final size:37
Alignment explanation
Indices: 69770669--69770771 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
69770659 GGAAATATAT
*
69770669 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
69770706 TCCGGGTAAGACCCGATGACAACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
69770743 TCCGAGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
69770772 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:69789472 original size:80 final size:80
Alignment explanation
Indices: 69789388--69789536 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
69789378 TATGGTAACC
* * * *
69789388 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
69789452 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
69789468 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
69789533 CCGG
66 CCGG
69789537 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:69789478 original size:40 final size:38
Alignment explanation
Indices: 69789429--69789536 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
69789419 ATCACGATTT
*
69789429 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
69789469 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
69789509 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
69789537 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:69797584 original size:80 final size:80
Alignment explanation
Indices: 69797500--69797648 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
69797490 TATGGTAACC
* * * * *
69797500 CGCACTAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACGAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
69797564 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * *
69797580 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACGAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
69797645 CCGG
66 CCGG
69797649 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (80 bp):
CGCACGAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:69797590 original size:40 final size:38
Alignment explanation
Indices: 69797541--69797648 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
69797531 ATCACGATTT
*
69797541 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
69797581 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
69797621 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
69797649 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:69803402 original size:51 final size:50
Alignment explanation
Indices: 69803321--69803464 Score: 243
Period size: 51 Copynumber: 2.8 Consensus size: 50
69803311 GTGGCCTTCA
69803321 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAGTGG
1 CCTTCACATAGTACCACACTTGTGT-CAAAGCTATTATATTCACAAAGTGG
69803372 CCTTCACATAGTACCACACTTGTGTACAAAGCTATTATATTCACAAAGTGG
1 CCTTCACATAGTACCACACTTGTGT-CAAAGCTATTATATTCACAAAGTGG
* *
69803423 CCTTCACATAGTACCACATTTGTGTCTAAAGCTATTTTATTC
1 CCTTCACATAGTACCACACTTGTGTC-AAAGCTATTATATTC
69803465 CTAAGGTTCA
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
50 1 0.01
51 88 0.99
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (50 bp):
CCTTCACATAGTACCACACTTGTGTCAAAGCTATTATATTCACAAAGTGG
Found at i:69803525 original size:28 final size:28
Alignment explanation
Indices: 69803488--69803582 Score: 128
Period size: 28 Copynumber: 3.5 Consensus size: 28
69803478 GGGAAATTTC
69803488 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
69803516 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
69803544 TTACTTAG----ATGCCATGGTA-TTATT
1 TCACTTAGCACAATGCCATGG-ACTTATT
69803568 TCACTTAGCACAATG
1 TCACTTAGCACAATG
69803583 TCATATCCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
24 20 0.34
25 1 0.02
28 37 0.64
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:69805023 original size:46 final size:46
Alignment explanation
Indices: 69804973--69805142 Score: 193
Period size: 47 Copynumber: 3.7 Consensus size: 46
69804963 TACAAGTGCT
*
69804973 AGTGTAAGA-TATGTCTGGGACATGCATCGGTCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CTCGAGATGTAAGCC
* * * *
69805019 AGTGTAAGA-CATATCGGGGACATGCATCGGCTACAAGATG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGATGTA-AGCC
* * * *
69805065 AGTGTAAGACCATGTCTGGGACACGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGGCTCGAGATGTAAGCC
69805112 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCG
69805143 ACACCTTACC
Statistics
Matches: 104, Mismatches: 14, Indels: 11
0.81 0.11 0.09
Matches are distributed among these distances:
45 3 0.03
46 45 0.43
47 48 0.46
48 8 0.08
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATGTAAGCC
Found at i:69805081 original size:93 final size:94
Alignment explanation
Indices: 69804921--69805142 Score: 240
Period size: 93 Copynumber: 2.4 Consensus size: 94
69804911 ACATTATGAG
* * * ** * *
69804921 AGCCAGTATAATACCATATCCGGGACATGGCATCGGC-A-TTGAT-ACAAGTGCTAGTGTAAGAT
1 AGCCAGTGTAAGACCATATCGGGGACATGGCATCGGCTACAAGATGA-TAGT-C-AGTGTAAGAC
* *
69804983 ATGTCTGGGACA-TGCATCGGTCTCGAGATGTA
63 ATGTCTGGGACACGGCATC-GACTCGAGATGTA
69805015 AGCCAGTGTAAGA-CATATCGGGGACAT-GCATCGGCTACAAGATGATAGTCAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATATCGGGGACATGGCATCGGCTACAAGATGATAGTCAGTGTAAGA-CAT
* *
69805078 GTCTGGGACACGGCATCGACTTGAGATGTG
65 GTCTGGGACACGGCATCGACTCGAGATGTA
* *
69805108 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATATCGGGGACATGGCATCG
69805143 ACACCTTACC
Statistics
Matches: 108, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
92 17 0.16
93 50 0.46
94 34 0.31
95 7 0.06
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATATCGGGGACATGGCATCGGCTACAAGATGATAGTCAGTGTAAGACATG
TCTGGGACACGGCATCGACTCGAGATGTA
Found at i:69823736 original size:50 final size:50
Alignment explanation
Indices: 69823659--69823758 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
69823649 ATTTGAAATG
69823659 ATAGATCAAGAAAAAATCAAAACTCGGGCTAAAATCGAAAAATATCAGGT
1 ATAGATCAAGAAAAAATCAAAACTCGGGCTAAAATCGAAAAATATCAGGT
* *
69823709 ATAGATCAAGGAAAAATCAAAATTCGGGCTAAAATCGAAAAATATCAGGT
1 ATAGATCAAGAAAAAATCAAAACTCGGGCTAAAATCGAAAAATATCAGGT
69823759 TGTGGACAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (50 bp):
ATAGATCAAGAAAAAATCAAAACTCGGGCTAAAATCGAAAAATATCAGGT
Found at i:69832392 original size:21 final size:21
Alignment explanation
Indices: 69832347--69832405 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
69832337 AAATATGTGC
* *
69832347 AATTTACTACCATAAA-TTCT
1 AATTTTCTACAATAAATTTCT
*
69832367 CATTTTCTACAATAAATTTCT
1 AATTTTCTACAATAAATTTCT
*
69832388 AATTTTCAACATATAAAT
1 AATTTTCTACA-ATAAAT
69832406 CCATGACTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 13 0.41
21 13 0.41
22 6 0.19
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.42
Consensus pattern (21 bp):
AATTTTCTACAATAAATTTCT
Found at i:69833614 original size:126 final size:125
Alignment explanation
Indices: 69833431--69833763 Score: 495
Period size: 126 Copynumber: 2.6 Consensus size: 125
69833421 CACAACACCG
** * ** *
69833431 TCGTTTTGTATTGAGCCTTTGGTGGCTTTAGCTGCATTTTTTAAAAACGCCGTTAAAGATCGAGT
1 TCGTTTTGTATTGAGATTTTAGTGGCTTTAG-TGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
* **
69833496 ATTAGCAGCGCTTTTTAGAAAACATTGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
65 ATTAGCGGCGCTTTTTAGAAAACACCGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
**
69833557 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGTGGCGCTTTTTAAAAACAACGCTAAAGATCGAGT
1 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGT-GCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
69833622 ATTAGCGGCGCTTTTTAGAAAACACCGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
65 ATTAGCGGCGCTTTTTAGAAAACACCGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
* * * *
69833683 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCAGCGCTTTTTAAAAATGCCACTAAAGATCAAGT
1 TCGTTTTGTATTGAGATTTTAGTGGCTTTAG-TGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
*
69833748 ATTAGCGGCACTTTTT
65 ATTAGCGGCGCTTTTT
69833764 TAAGAAACGC
Statistics
Matches: 187, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
125 1 0.01
126 186 0.99
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (125 bp):
TCGTTTTGTATTGAGATTTTAGTGGCTTTAGTGCGCTTTTTAAAAACGCCGCTAAAGATCGAGTA
TTAGCGGCGCTTTTTAGAAAACACCGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
Found at i:69833844 original size:40 final size:40
Alignment explanation
Indices: 69833749--69833854 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
69833739 AGATCAAGTA
* *
69833749 TTAGCGGCACTTTTTTAAGAAACGCCGCTATATGTACACCT
1 TTAGCAGCA-TTTTTTAAAAAACGCCGCTATATGTACACCT
* * *
69833790 TTAGCGGCACTTTTTAAAAAACGCCGCTA-ATGCT-CGATCT
1 TTAGCAGCATTTTTTAAAAAACGCCGCTATATG-TAC-ACCT
* *
69833830 TTAGCAGCGTTTTTTGAAAAACGCC
1 TTAGCAGCATTTTTTAAAAAACGCC
69833855 ACAAAAAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
39 4 0.07
40 43 0.77
41 9 0.16
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (40 bp):
TTAGCAGCATTTTTTAAAAAACGCCGCTATATGTACACCT
Found at i:69834090 original size:15 final size:15
Alignment explanation
Indices: 69834070--69834117 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
69834060 ACTATTGTAA
69834070 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
69834085 GGTTTAAGGATTAT-
1 GGTTTATGGATTATG
*
69834099 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
69834114 GGTT
1 GGTT
69834118 AAGGGTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:69834092 original size:22 final size:21
Alignment explanation
Indices: 69834016--69834226 Score: 136
Period size: 22 Copynumber: 9.8 Consensus size: 21
69834006 TCATTATAGT
* *
69834016 TTAGGGTTTATGGTATAT-GG
1 TTAGGGTTTAAGGTTTATGGG
* *
69834036 TTAAGGGTTTAATGTTTATGAG
1 TT-AGGGTTTAAGGTTTATGGG
*** *
69834058 TTACTATTGTAAGGTTTATGGA
1 TTAGGGTT-TAAGGTTTATGGG
* *
69834080 TTATGGGTTTAAGGATTATGGT
1 TTA-GGGTTTAAGGTTTATGGG
* * * *
69834102 TTATGGTTTATGGGTTAAGGG
1 TTAGGGTTTAAGGTTTATGGG
* *
69834123 TTAGGGTTTAAGTTTTAGGGGG
1 TTAGGGTTTAAGGTTTA-TGGG
*
69834145 TTAGGGTTTAAGGTTTAGGGG
1 TTAGGGTTTAAGGTTTATGGG
* * *
69834166 TTAAGGGTTTATGTTTTATGGT
1 TT-AGGGTTTAAGGTTTATGGG
* * * *
69834188 TTAAGGTTTATGGGTTAGGGG
1 TTAGGGTTTAAGGTTTATGGG
*
69834209 TTAGGGATTTAGGGTTTA
1 TTAGGG-TTTAAGGTTTA
69834227 GATTAATTAG
Statistics
Matches: 146, Mismatches: 38, Indels: 12
0.74 0.19 0.06
Matches are distributed among these distances:
20 2 0.01
21 67 0.46
22 75 0.51
23 2 0.01
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.44
Consensus pattern (21 bp):
TTAGGGTTTAAGGTTTATGGG
Found at i:69834189 original size:36 final size:36
Alignment explanation
Indices: 69834099--69834210 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
69834089 TAAGGATTAT
* * *
69834099 GGTTTATGGTTTATGGGTTAAGGGTTAGGGTTTAA-
1 GGTTTATGGTTTATGGTTTAAGGTTTAGGGGTTAAG
* * * *
69834134 GTTTTAGGGGGTTAGGGTTTAAGGTTTAGGGGTTAAG
1 GGTTTA-TGGTTTATGGTTTAAGGTTTAGGGGTTAAG
* * *
69834171 GGTTTATGTTTTATGGTTTAAGGTTTATGGGTTAGG
1 GGTTTATGGTTTATGGTTTAAGGTTTAGGGGTTAAG
69834207 GGTT
1 GGTT
69834211 AGGGATTTAG
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
35 5 0.08
36 51 0.84
37 5 0.08
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (36 bp):
GGTTTATGGTTTATGGTTTAAGGTTTAGGGGTTAAG
Found at i:69834225 original size:36 final size:36
Alignment explanation
Indices: 69834145--69834226 Score: 103
Period size: 36 Copynumber: 2.3 Consensus size: 36
69834135 TTTTAGGGGG
* * *
69834145 TTAGGGTTTAAGGTTTAGGGGTTAAGGGTTTATGTT
1 TTAGGGTTTAAGGTTTAGGGGTTAAGGGGTTAGGAT
* *
69834181 TTATGGTTTAAGGTTTATGGGTT-AGGGGTTAGGGAT
1 TTAGGGTTTAAGGTTTAGGGGTTAAGGGGTTA-GGAT
69834217 TTAGGGTTTA
1 TTAGGGTTTA
69834227 GATTAATTAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 7 0.18
36 32 0.82
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.44
Consensus pattern (36 bp):
TTAGGGTTTAAGGTTTAGGGGTTAAGGGGTTAGGAT
Found at i:69834226 original size:7 final size:7
Alignment explanation
Indices: 69834070--69834227 Score: 95
Period size: 7 Copynumber: 22.0 Consensus size: 7
69834060 ACTATTGTAA
*
69834070 GGTTTAT
1 GGTTTAG
*
69834077 GGATTATG
1 GGTTTA-G
*
69834085 GGTTTAA
1 GGTTTAG
* *
69834092 GGATTAT
1 GGTTTAG
*
69834099 GGTTTAT
1 GGTTTAG
69834106 GGTTTATG
1 GGTTTA-G
*
69834114 GGTTAAG
1 GGTTTAG
69834121 GG-TTAG
1 GGTTTAG
*
69834127 GGTTTAA
1 GGTTTAG
*
69834134 GTTTTAGG
1 GGTTTA-G
*
69834142 GGGTTAG
1 GGTTTAG
*
69834149 GGTTTAA
1 GGTTTAG
69834156 GGTTTAGG
1 GGTTTA-G
*
69834164 GGTTAAG
1 GGTTTAG
*
69834171 GGTTTAT
1 GGTTTAG
* *
69834178 GTTTTAT
1 GGTTTAG
*
69834185 GGTTTAA
1 GGTTTAG
69834192 GGTTTATG
1 GGTTTA-G
69834200 GG-TTAG
1 GGTTTAG
*
69834206 GGGTTAG
1 GGTTTAG
69834213 GGATTTAG
1 GG-TTTAG
69834221 GGTTTAG
1 GGTTTAG
69834228 ATTAATTAGT
Statistics
Matches: 117, Mismatches: 26, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
6 8 0.07
7 82 0.70
8 27 0.23
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:69840694 original size:13 final size:13
Alignment explanation
Indices: 69840676--69840704 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
69840666 GTGTTATGGT
69840676 GATAGAGATTTGC
1 GATAGAGATTTGC
69840689 GATAGAGATTTGC
1 GATAGAGATTTGC
69840702 GAT
1 GAT
69840705 TTACCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.31
Consensus pattern (13 bp):
GATAGAGATTTGC
Found at i:69842983 original size:13 final size:13
Alignment explanation
Indices: 69842917--69842974 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
69842907 ATATGTTTAG
69842917 ATGAAATGGTTAT
1 ATGAAATGGTTAT
** * *
69842930 ACAAAATGTTTTT
1 ATGAAATGGTTAT
* *
69842943 ATGAAAATAGATAT
1 ATG-AAATGGTTAT
69842957 ATGAAATGGTTAT
1 ATGAAATGGTTAT
69842970 ATGAA
1 ATGAA
69842975 GTGTCTATAC
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
13 23 0.72
14 9 0.28
ACGTcount: A:0.45, C:0.02, G:0.17, T:0.36
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:69845468 original size:16 final size:16
Alignment explanation
Indices: 69845449--69845497 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
69845439 AAGCTATCTC
*
69845449 TATTGCGATCTATGTG
1 TATTGCGAACTATGTG
*
69845465 TATTGCAAACTATGCCT-
1 TATTGCGAACTATG--TG
69845482 TATTGCGAACTATGTG
1 TATTGCGAACTATGTG
69845498 AAATACGAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
15 1 0.04
16 12 0.44
17 13 0.48
18 1 0.04
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (16 bp):
TATTGCGAACTATGTG
Found at i:69847209 original size:41 final size:41
Alignment explanation
Indices: 69847151--69847246 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
69847141 GATGAATTAT
69847151 ACATACATGCCCCTGTTTGTACTTCAGTACCCCTAAATTGC
1 ACATACATGCCCCTGTTTGTACTTCAGTACCCCTAAATTGC
* * * * *
69847192 ACATACGTGCCCTTGTTTGTACTTCGGTACCTCTGAATTGC
1 ACATACATGCCCCTGTTTGTACTTCAGTACCCCTAAATTGC
*
69847233 ACACACATGCCCCT
1 ACATACATGCCCCT
69847247 ATTTAGACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.22, C:0.32, G:0.15, T:0.31
Consensus pattern (41 bp):
ACATACATGCCCCTGTTTGTACTTCAGTACCCCTAAATTGC
Found at i:69851587 original size:66 final size:66
Alignment explanation
Indices: 69851481--69851608 Score: 238
Period size: 66 Copynumber: 1.9 Consensus size: 66
69851471 GAAGAAGAAA
* *
69851481 GGCTTTGTTTATGGGATATTTTTGTTTAAGGTGATAGAAAGGTTATCCAAATGGATTTTTATGGA
1 GGCTTTATTTATGGGATATTTTTGTTTAAGATGATAGAAAGGTTATCCAAATGGATTTTTATGGA
69851546 T
66 T
69851547 GGCTTTATTTATGGGATATTTTTGTTTAAGATGATAGAAAGGTTATCCAAATGGATTTTTAT
1 GGCTTTATTTATGGGATATTTTTGTTTAAGATGATAGAAAGGTTATCCAAATGGATTTTTAT
69851609 AGTGCTCTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45
Consensus pattern (66 bp):
GGCTTTATTTATGGGATATTTTTGTTTAAGATGATAGAAAGGTTATCCAAATGGATTTTTATGGA
T
Found at i:69852284 original size:27 final size:27
Alignment explanation
Indices: 69852245--69852304 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
69852235 AAATTAAAGT
*
69852245 CTTTGTGGCAATTTATAAAGTGGAAGC
1 CTTTGTGGCAATTTATAAAATGGAAGC
* *
69852272 GTTTGTGGCAATTTATAAAATTGAAGC
1 CTTTGTGGCAATTTATAAAATGGAAGC
69852299 CTTTGT
1 CTTTGT
69852305 AGCGATCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.38
Consensus pattern (27 bp):
CTTTGTGGCAATTTATAAAATGGAAGC
Found at i:69852497 original size:27 final size:27
Alignment explanation
Indices: 69852474--69852567 Score: 125
Period size: 27 Copynumber: 3.5 Consensus size: 27
69852464 AGGTATGGTA
* * *
69852474 AACTCTGAAAGAATGGTACATATGACG
1 AACTCTAAAAGAATAGTACATATGGCG
*
69852501 AACTCTAAAAGAATAGTACGTATGGCG
1 AACTCTAAAAGAATAGTACATATGGCG
* *
69852528 AACTCCAAAAGAATAGTACATATGACG
1 AACTCTAAAAGAATAGTACATATGGCG
*
69852555 AACTCTAAGAGAA
1 AACTCTAAAAGAA
69852568 ATGATTCCGT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.20
Consensus pattern (27 bp):
AACTCTAAAAGAATAGTACATATGGCG
Found at i:69853384 original size:2 final size:2
Alignment explanation
Indices: 69853377--69853406 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
69853367 GGGATGTTAC
69853377 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69853407 GTACAATGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69853657 original size:23 final size:24
Alignment explanation
Indices: 69853614--69853667 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 24
69853604 TTACATATTT
* *
69853614 AAAATTATTCTTGAGT-TTTTTAA
1 AAAATTATTCATGAGTATTTTCAA
69853637 AAAATTATTCATG-GTAATTTTCAA
1 AAAATTATTCATGAGT-ATTTTCAA
69853661 ACAAATT
1 A-AAATT
69853668 TAAAAAGCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 2 0.08
23 12 0.46
24 7 0.27
25 5 0.19
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (24 bp):
AAAATTATTCATGAGTATTTTCAA
Found at i:69857139 original size:16 final size:17
Alignment explanation
Indices: 69857108--69857140 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
69857098 TTTAATATGT
69857108 ATAATAAATATATAAAA
1 ATAATAAATATATAAAA
*
69857125 ATAAT-AATTTATAAAA
1 ATAATAAATATATAAAA
69857141 TTAAACTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAATAAATATATAAAA
Found at i:69857251 original size:26 final size:26
Alignment explanation
Indices: 69857219--69857280 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
69857209 ACTAAATTAG
69857219 AATATATATCTACTACATAA-ACTAACAT
1 AATATATA-CTACTA-ATAATA-TAACAT
*
69857247 AATATATACTACTAATAATATAATAT
1 AATATATACTACTAATAATATAACAT
69857273 AATATATA
1 AATATATA
69857281 ATTATTACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 17 0.53
27 7 0.22
28 8 0.25
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.35
Consensus pattern (26 bp):
AATATATACTACTAATAATATAACAT
Found at i:69857635 original size:240 final size:230
Alignment explanation
Indices: 69857317--69857794 Score: 545
Period size: 240 Copynumber: 2.0 Consensus size: 230
69857307 TAATTGTAAT
* * *
69857317 ATATAATGTACTAGTAATATATATAACTATTATTACAATACAGATTGCAATAAAAGATATAGTAT
1 ATATAATGTACTACTAATATATATAACTATTATTA-AATACAGATTACAATAAAAGATATAATAT
69857382 TACTTGATATTATAATGTTCAA-CATTAATGCATATATATAAACTATTAATATATTATATATTAT
65 TACTTGATATTAT-ATGTTCAATCATTAATGC--ATATAT-AACTATTAATAT-TT-TATA-TA-
* * * * *
69857446 TTATTATGTGATATGATATAACATTATATAATATAGTAGCAAG-GCTAATTTTTAAATATAC-AA
122 CTA-TATG-G-CATGATATAACATTATATAATATAG-AACAAGTGCTAACTTTCAAATATACGAA
*
69857509 AAATATAGAGACTTAAAGCATATGTCAACCAATATAATGATAAACAATAAC
183 AAATATAGAGACATAAAGCATATGTCAACCAATAT-A--ATAAACAATAAC
* * *
69857560 ATATAATGTACTACTATTATATATAACTATTA-T-ATTACAGATTATAATAAAAGATATAATATT
1 ATATAATGTACTACTAATATATATAACTATTATTAAATACAGATTACAATAAAAGATATAATATT
* * * *
69857623 ACATT-ATATTATATGTTTAATTATTGATGCATATATAACTATTAATATTTTGTATACTATATGG
66 AC-TTGATATTATATGTTCAATCATTAATGCATATATAACTATTAATATTTTATATACTATATGG
* * * *
69857687 CATGATATAGCATTATATAATATTGAACAAGTGCTAACTTTCAAATGTACGAAAAGTATAGAGAC
130 CATGATATAACATTATATAATATAGAACAAGTGCTAACTTTCAAATATACGAAAAATATAGAGAC
* * * *
69857752 ATAGAGCATATTTCAATCAATATAATAAACAATAAT
195 ATAAAGCATATGTCAACCAATATAATAAACAATAAC
69857788 ATATAAT
1 ATATAAT
69857795 AATTAATATA
Statistics
Matches: 207, Mismatches: 24, Indels: 23
0.81 0.09 0.09
Matches are distributed among these distances:
228 18 0.09
229 5 0.02
230 38 0.18
231 33 0.16
232 4 0.02
233 2 0.01
234 2 0.01
235 3 0.01
236 2 0.01
237 12 0.06
238 6 0.03
239 7 0.03
240 42 0.20
241 2 0.01
242 1 0.00
243 30 0.14
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (230 bp):
ATATAATGTACTACTAATATATATAACTATTATTAAATACAGATTACAATAAAAGATATAATATT
ACTTGATATTATATGTTCAATCATTAATGCATATATAACTATTAATATTTTATATACTATATGGC
ATGATATAACATTATATAATATAGAACAAGTGCTAACTTTCAAATATACGAAAAATATAGAGACA
TAAAGCATATGTCAACCAATATAATAAACAATAAC
Found at i:69857932 original size:7 final size:7
Alignment explanation
Indices: 69857901--69857926 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
69857891 CATTGGTGCA
69857901 TATATAT
1 TATATAT
69857908 TATATAT
1 TATATAT
69857915 TATATAT
1 TATATAT
69857922 TATAT
1 TATAT
69857927 GATATAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TATATAT
Found at i:69857945 original size:242 final size:238
Alignment explanation
Indices: 69857560--69858016 Score: 557
Period size: 242 Copynumber: 1.9 Consensus size: 238
69857550 AAACAATAAC
*
69857560 ATATAATGTACTACTATTATATATAACTATTATATTACAGATTATAATAAAAGATATAATATTAC
1 ATATAATGTACTACTATTATATATAACTATTATATTACAGATTATAATAAAAAATATAATATTAC
** * * * * *
69857625 ATTATATTATATGTTTAATTATTGATGCATATATAACTATTAATATTTTGTATACTATATGGCAT
66 AAGATATTATATGTTCAATCATTGATGCA-ATATAACTATTAATATATTATATACTATATGACAT
* * * *
69857690 GATATAGCATTATATAATATTGAACAAGTGCTAACTTTCAAATGTACGAAAAGTA-TAGAGACAT
130 AATATAACATTATATAATA---AACAAGGGCTAACTTTCAAATGTACAAAAAGTATTAG-GACAT
69857754 AGAGCATATTTCAATCAATATAATAAACAATAATATATAATAATTAAT
191 AGAGCATATTTCAATCAATATAATAAACAATAATATATAATAATTAAT
* * *
69857802 ATATAATGTAC-ATCTATTATATATAGCTATTATTATATTATAGATTATAATAAAAAAATATAGT
1 ATATAATGTACTA-CTATTATATATA---ACTATTATATTACAGATTATAAT-AAAAAATATAAT
* *
69857866 ATTACAAGATATTATAGTGTTCAATCATTGGTGC-ATAT-A-TATT-ATATATTATATATTATAT
61 ATTACAAGATATTATA-TGTTCAATCATTGATGCAATATAACTATTAATATATTATATACTATAT
* * * * *
69857927 GATATAATATAACATTATATAATAAAGAAGGGCTAACTTTCAAATGTGCAAAAAGTATTAGGTCT
125 GACATAATATAACATTATATAATAAACAAGGGCTAACTTTCAAATGTACAAAAAGTATTAGGACA
* *
69857992 TAGAGTATATTTCAATCAGTATAAT
190 TAGAGCATATTTCAATCAATATAAT
69858017 GACCGAGCCT
Statistics
Matches: 184, Mismatches: 24, Indels: 17
0.82 0.11 0.08
Matches are distributed among these distances:
239 54 0.29
240 3 0.02
241 1 0.01
242 58 0.32
243 4 0.02
244 1 0.01
245 25 0.14
246 24 0.13
247 14 0.08
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.39
Consensus pattern (238 bp):
ATATAATGTACTACTATTATATATAACTATTATATTACAGATTATAATAAAAAATATAATATTAC
AAGATATTATATGTTCAATCATTGATGCAATATAACTATTAATATATTATATACTATATGACATA
ATATAACATTATATAATAAACAAGGGCTAACTTTCAAATGTACAAAAAGTATTAGGACATAGAGC
ATATTTCAATCAATATAATAAACAATAATATATAATAATTAAT
Found at i:69862106 original size:47 final size:47
Alignment explanation
Indices: 69862038--69862303 Score: 157
Period size: 47 Copynumber: 5.7 Consensus size: 47
69862028 ATTGTTGGCT
*
69862038 AGTGTAAGACATGT-TCAGGACAT-GCATCGACCACATTATGAGAGCC
1 AGTGTAAGACATGTCT-GGGACATGGCATCGACCACATTATGAGAGCC
* * *
69862084 AGTGTAAGACCATGTCTGGGACATGGCATCG---GCATTGA-GACAATAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGACCACATT-ATG---AGAGCC
* *
69862132 AGTGTAAGACATGTTTGGGACAT-GCATC-AGC-C-TTGA-GATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCACATT-ATGA-G--AGCC
* *** * * *
69862178 AGTGTAAGACATGTCTAGGACAT-GCATCGGTTACGA-GATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCAC-ATTATGAGAGCC
* * *
69862224 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTA-A-GATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGAC-CACATTATGAGAGCC
69862271 AGTGTAAGACTATGTCTGGGACATGGCATCGAC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGAC
69862304 ACCTTACCCA
Statistics
Matches: 177, Mismatches: 21, Indels: 43
0.73 0.09 0.18
Matches are distributed among these distances:
43 1 0.01
45 5 0.03
46 62 0.35
47 77 0.44
48 28 0.16
49 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACCACATTATGAGAGCC
Found at i:69862182 original size:46 final size:47
Alignment explanation
Indices: 69862080--69862301 Score: 233
Period size: 47 Copynumber: 4.7 Consensus size: 47
69862070 ACATTATGAG
* **
69862080 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-CAAT
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATC-GCCTTGAGATGTAT
* *
69862128 AGCTAGTGTAAGACATGTTTGGGACAT-GCATCAGCCTTGAGATGTA-
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATC-GCCTTGAGATGTAT
* *
69862174 AGCCAGTGTAAGACATGTCTAGGACAT-GCATCG-GTTACGAGATG-AT
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATCGCCTT--GAGATGTAT
* * * *
69862220 AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTAAGATGT-G
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGCCTTGAGATGTAT
69862267 AGCCAGTGTAAGACTATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCG
69862302 ACACCTTACC
Statistics
Matches: 149, Mismatches: 16, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 61 0.41
47 64 0.43
48 18 0.12
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGCCTTGAGATGTAT
Found at i:69862291 original size:140 final size:141
Alignment explanation
Indices: 69862038--69862300 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
69862028 ATTGTTGGCT
*
69862038 AGTGTAAGACATGTTCAGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTCAGGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
69862103 GACATGGCATCGGCATTGAGACAATAGCTAGTGTAAGACATGTTTGGGACAT-GCATCAGCCTTG
66 GACATGGCATCGACATTAAGACAATAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTTG
69862167 AGATGTAAGCC
131 AGATGTAAGCC
*** * *
69862178 AGTGTAAGACATG-TCTAGGACATGCATCGGTTACGA-GATGATAGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTTC-AGGACATGCATCGACCAC-ATGATGAGAGCCAGTGTAAGACCATGTCT
**
69862241 GGGACATGGCATCGAC-TTAAGA-TGTGAGCCAGTGTAAGACTATGTCTGGGACATGGCATC
64 GGGACATGGCATCGACATTAAGACAAT-AGCCAGTGTAAGAC-ATGTCTGGGACATGGCATC
69862301 GACACCTTAC
Statistics
Matches: 106, Mismatches: 12, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 79 0.75
141 6 0.06
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTTCAGGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTAAGACAATAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTTG
AGATGTAAGCC
Found at i:69864432 original size:26 final size:26
Alignment explanation
Indices: 69864403--69864510 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
69864393 TGGTACAAAT
69864403 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
69864429 TGATAATGGATTAGGCAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69864455 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
69864481 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69864507 TGAT
1 TGAT
69864511 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:69866314 original size:29 final size:28
Alignment explanation
Indices: 69866282--69866384 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
69866272 GTGACGAGAT
* *
69866282 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
69866311 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
69866340 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
69866369 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69866385 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:69874271 original size:29 final size:28
Alignment explanation
Indices: 69874239--69874341 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
69874229 GTGACGAGAT
* *
69874239 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
69874268 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
69874297 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
69874326 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69874342 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:69883633 original size:28 final size:27
Alignment explanation
Indices: 69883569--69883638 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
69883559 ATTTGATACC
*
69883569 GAGCACTAAGTGTGCGAAATCGGTATT
1 GAGCACTAAGTGTGCGAAACCGGTATT
69883596 GAGCACTAAGTGTGCGAAACCGGTCATT
1 GAGCACTAAGTGTGCGAAACCGGT-ATT
69883624 GAGCACTAAGTGTGC
1 GAGCACTAAGTGTGC
69883639 AAGTTGGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 23 0.56
28 18 0.44
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (27 bp):
GAGCACTAAGTGTGCGAAACCGGTATT
Found at i:69883709 original size:28 final size:28
Alignment explanation
Indices: 69883569--69883719 Score: 132
Period size: 28 Copynumber: 5.5 Consensus size: 28
69883559 ATTTGATACC
*
69883569 GAGCACTAAGTGTGCGAAATCGG-TATT
1 GAGCACTAAGTGTGTGAAATCGGTTATT
* * *
69883596 GAGCACTAAGTGTGCGAAACCGGTCATT
1 GAGCACTAAGTGTGTGAAATCGGTTATT
* * *
69883624 GAGCACTAAGTGTG-CAAGTTGGTT-TT
1 GAGCACTAAGTGTGTGAAATCGGTTATT
* * * * *
69883650 AAGCATTAAGTGTGT-AATTTGGATT-TCC
1 GAGCACTAAGTGTGTGAAATCGG-TTAT-T
*
69883678 GAGCACTAAATGTGTGAAATCGGTTATT
1 GAGCACTAAGTGTGTGAAATCGGTTATT
69883706 GAGCACTAAGTGTG
1 GAGCACTAAGTGTG
69883720 CGAGAAAATT
Statistics
Matches: 100, Mismatches: 18, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
26 20 0.20
27 30 0.30
28 44 0.44
29 6 0.06
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GAGCACTAAGTGTGTGAAATCGGTTATT
Found at i:69890804 original size:29 final size:28
Alignment explanation
Indices: 69890734--69890808 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
69890724 ATACTCGATT
* *
69890734 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
69890762 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
69890791 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
69890809 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:69890825 original size:29 final size:29
Alignment explanation
Indices: 69890792--69890865 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
69890782 CCTTCGAGCT
69890792 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
69890821 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69890850 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69890866 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:69898679 original size:29 final size:28
Alignment explanation
Indices: 69898609--69898683 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
69898599 ATACTCGATT
* *
69898609 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
69898637 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
69898666 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
69898684 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:69898700 original size:29 final size:29
Alignment explanation
Indices: 69898667--69898740 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
69898657 CCTTCGAGCT
69898667 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
69898696 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69898725 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69898741 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:69902076 original size:28 final size:28
Alignment explanation
Indices: 69902045--69902199 Score: 149
Period size: 28 Copynumber: 5.6 Consensus size: 28
69902035 ATTTGATACC
*
69902045 GAGCACTAAGTGTGGGAAATCGGTCATT
1 GAGCACTAAGTGTGCGAAATCGGTCATT
69902073 GAGCACTAAGTGTGCGAAATCGGTCATT
1 GAGCACTAAGTGTGCGAAATCGGTCATT
* * *
69902101 GAGCACTAAGTGTGC-AAGTTGGT-TTT
1 GAGCACTAAGTGTGCGAAATCGGTCATT
* * * * *
69902127 AAGCATTAAGTGTG-TAATTTGG--ATTT
1 GAGCACTAAGTGTGCGAAATCGGTCA-TT
*
69902153 CCGAGCACTAAGTGTGCGAAATCGGTTATT
1 --GAGCACTAAGTGTGCGAAATCGGTCATT
*
69902183 GGGCACTAAGTGTGCGA
1 GAGCACTAAGTGTGCGA
69902200 GAAAATTTTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
26 22 0.21
27 6 0.06
28 70 0.66
29 5 0.05
30 2 0.02
31 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
GAGCACTAAGTGTGCGAAATCGGTCATT
Found at i:69905141 original size:47 final size:46
Alignment explanation
Indices: 69905074--69905387 Score: 219
Period size: 47 Copynumber: 6.7 Consensus size: 46
69905064 ATTGTTGGCT
* * * *
69905074 AGTGTAAGA-TATGTCCGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACA-GATGAGAGCC
* * *
69905120 AGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTAAGAAGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA--CAGATGAGAGCC
* ** * *
69905168 AGTGTAAGACCATGTCTGGGGCATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TACAGATGAGAGCC
* * *
69905216 AGTGTAAGA-CATGTCTGGGACATGTATCGACCT-CGAGAAGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCG-GCTAC-AGATG-AGAGCC
** * * * * *
69905262 AGTAAAAGA-AATGTCTAGGACATGCATCGGTTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTAC-AGATGAGAGCC
* * * *
69905308 AATGTAAGACTATGTCTGGGACATGACATCGACTTA-AGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGC-TACAGATGAGAGCC
*
69905355 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
69905388 ACCTTACCCA
Statistics
Matches: 213, Mismatches: 40, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.01
46 61 0.29
47 76 0.36
48 70 0.33
49 3 0.01
50 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTACAGATGAGAGCC
Found at i:69905166 original size:48 final size:47
Alignment explanation
Indices: 69905113--69905386 Score: 231
Period size: 48 Copynumber: 5.8 Consensus size: 47
69905103 GCCACATTAT
69905113 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTAAGAA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-ATTAAGAA
* * * *
69905161 GAGAGCTAGTGTAAGACCATGTCTGGGGCATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-ATTAAGAA
* * **
69905209 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GTATC-GACCTCGAGAA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGA--TTAAGAA
** * * *
69905255 GTA-AGCCAGTAAAAGA-AATGTCTAGGACAT-GCATCGG-TTACGAGAT
1 G-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGATTA--AGAA
* * * * * *
69905301 GATAGTCAATGTAAGACTATGTCTGGGACATGACATC-GACTTAAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGA-TTAAGAA
* *
69905348 GTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
69905387 CACCTTACCC
Statistics
Matches: 182, Mismatches: 32, Indels: 24
0.76 0.13 0.10
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 49 0.27
47 62 0.34
48 64 0.35
49 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGATTAAGAA
Found at i:69907801 original size:27 final size:27
Alignment explanation
Indices: 69907739--69907805 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
69907729 AGCATCTGTT
* * *
69907739 GGGATAGTAAACATGGGGTAGTCCGCT
1 GGGATAGTAAACATGAGGTAGTCCACC
* *
69907766 AGGATAGTAAACATGATGTAGTCCACC
1 GGGATAGTAAACATGAGGTAGTCCACC
*
69907793 GGGACAGTAAACA
1 GGGATAGTAAACA
69907806 CGGGTGGTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.19
Consensus pattern (27 bp):
GGGATAGTAAACATGAGGTAGTCCACC
Found at i:69910194 original size:40 final size:40
Alignment explanation
Indices: 69910067--69910196 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
69910057 ATGCTGGAAA
* *
69910067 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * * **
69910107 CTACATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
69910147 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
69910187 TTATATCCGG
1 TTATATCCGG
69910197 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 4 0.05
40 70 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:69914839 original size:46 final size:47
Alignment explanation
Indices: 69914781--69914907 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 47
69914771 TCATCTCGTA
*
69914781 GTCGATGCCATGTCCCAGACATATCTTGCACTAGCT-TACATCTCAAG
1 GTCGATGCCATGTCCCAGACATATCTTACACTAGCTCT-CATCTCAAG
* * * *
69914828 GTCGATG-CATGTCCCAGATATGTCTTACACTAGCTCTCGTCTCAAT
1 GTCGATGCCATGTCCCAGACATATCTTACACTAGCTCTCATCTCAAG
* * *
69914874 GTCGATGTCATGTCCAAGACATGGTCTTACACTA
1 GTCGATGCCATGTCCCAGACAT-ATCTTACACTA
69914908 ACTCACAATA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 39 0.56
47 20 0.29
48 11 0.16
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATATCTTACACTAGCTCTCATCTCAAG
Found at i:69915879 original size:16 final size:16
Alignment explanation
Indices: 69915855--69915886 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69915845 CTAAGTGTCT
*
69915855 TTTTTCCCTTTAAAGA
1 TTTTGCCCTTTAAAGA
69915871 TTTTGCCCTTTAAAGA
1 TTTTGCCCTTTAAAGA
69915887 CCCCAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (16 bp):
TTTTGCCCTTTAAAGA
Found at i:69918308 original size:35 final size:35
Alignment explanation
Indices: 69918262--69918353 Score: 157
Period size: 35 Copynumber: 2.6 Consensus size: 35
69918252 TCCTCATTGA
69918262 AATACCATACCTACATTTCACAACTCAGTATGGTT
1 AATACCATACCTACATTTCACAACTCAGTATGGTT
*
69918297 AATACCATACCTACATTTCACAAGTCAGTATGGTT
1 AATACCATACCTACATTTCACAACTCAGTATGGTT
**
69918332 AATACCATACCTATGTTTCACA
1 AATACCATACCTACATTTCACA
69918354 CTTTTCCATG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGTT
Found at i:69920674 original size:64 final size:64
Alignment explanation
Indices: 69920601--69920734 Score: 241
Period size: 64 Copynumber: 2.1 Consensus size: 64
69920591 TAATATTTCT
* * *
69920601 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGAGTTTTAATAAATTTATTTATTAATATAATATGCCCCATCTAATATACAA
69920665 ATATTTCTATCACGAGTTTTAATAAATTTATTTATTAATATAATATGCCCCATCTAATATACAA
1 ATATTTCTATCACGAGTTTTAATAAATTTATTTATTAATATAATATGCCCCATCTAATATACAA
69920729 ATATTT
1 ATATTT
69920735 AATAAAATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (64 bp):
ATATTTCTATCACGAGTTTTAATAAATTTATTTATTAATATAATATGCCCCATCTAATATACAA
Found at i:69920809 original size:24 final size:24
Alignment explanation
Indices: 69920782--69920852 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
69920772 ATTATTATTG
*
69920782 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
69920806 AAATATTATTGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
69920830 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
69920853 TTTAAGTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.44
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:69921062 original size:29 final size:29
Alignment explanation
Indices: 69921030--69921096 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
69921020 ACATGTATAG
* *
69921030 TATTTAATTAAAATAATTTTTTTCAATAT
1 TATTTAATTAAAATAATTTTTATAAATAT
69921059 TATTTAATTAAAATAATTTTTATAAATAT
1 TATTTAATTAAAATAATTTTTATAAATAT
69921088 TATTTAATT
1 TATTTAATT
69921097 CGCAACTTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (29 bp):
TATTTAATTAAAATAATTTTTATAAATAT
Found at i:69921080 original size:16 final size:16
Alignment explanation
Indices: 69921032--69921080 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
69921022 ATGTATAGTA
69921032 TTTAATTAAAATAATT
1 TTTAATTAAAATAATT
*
69921048 TTT--TT-CAAT-ATT
1 TTTAATTAAAATAATT
69921060 ATTTAATTAAAATAATT
1 -TTTAATTAAAATAATT
69921077 TTTA
1 TTTA
69921081 TAAATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
12 3 0.12
13 6 0.23
14 2 0.08
15 2 0.08
16 10 0.38
17 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTAATTAAAATAATT
Found at i:69921239 original size:9 final size:9
Alignment explanation
Indices: 69921208--69921573 Score: 381
Period size: 9 Copynumber: 41.4 Consensus size: 9
69921198 AATATTTAAC
*
69921208 ATAACTTAC
1 ATAACTTAT
* *
69921217 AAAACTTAC
1 ATAACTTAT
69921226 ATAACTTAT
1 ATAACTTAT
* *
69921235 GTAACTTAG
1 ATAACTTAT
*
69921244 ATAA-ATAT
1 ATAACTTAT
69921252 ATAACTTAT
1 ATAACTTAT
*
69921261 ATAACTTAC
1 ATAACTTAT
69921270 ATAACTTAT
1 ATAACTTAT
69921279 ATAACTTAT
1 ATAACTTAT
*
69921288 ATAACTTAG
1 ATAACTTAT
*
69921297 ATAA-ATAT
1 ATAACTTAT
*
69921305 ATAACTTAC
1 ATAACTTAT
*
69921314 ATAACTTAC
1 ATAACTTAT
69921323 ATAACTTAT
1 ATAACTTAT
*
69921332 ATAACTTAG
1 ATAACTTAT
*
69921341 ATAA-ATAT
1 ATAACTTAT
69921349 ATAACTTAT
1 ATAACTTAT
*
69921358 ATAACTTAC
1 ATAACTTAT
69921367 ATAACTTAT
1 ATAACTTAT
*
69921376 ATAACTTAG
1 ATAACTTAT
*
69921385 ATAA-ATAT
1 ATAACTTAT
*
69921393 ATAACTTAC
1 ATAACTTAT
*
69921402 ATAACTTAC
1 ATAACTTAT
69921411 ATAACTTAT
1 ATAACTTAT
*
69921420 ATAACTTAG
1 ATAACTTAT
69921429 ATCAA--TAT
1 AT-AACTTAT
69921437 ATAACTTAT
1 ATAACTTAT
69921446 ATAACTTAT
1 ATAACTTAT
*
69921455 ATAACTTAC
1 ATAACTTAT
69921464 ATAACTTAT
1 ATAACTTAT
69921473 ATAACTTAT
1 ATAACTTAT
*
69921482 ATAACTTAG
1 ATAACTTAT
*
69921491 ATAA-ATAT
1 ATAACTTAT
*
69921499 ATAACTTAC
1 ATAACTTAT
69921508 ATAACTTAT
1 ATAACTTAT
*
69921517 ATAACTTAG
1 ATAACTTAT
*
69921526 ATAA-ATAT
1 ATAACTTAT
*
69921534 ATAACTTAC
1 ATAACTTAT
*
69921543 ATAA-ATAT
1 ATAACTTAT
* *
69921551 ATATCATAT
1 ATAACTTAT
*
69921560 CATAACTTAC
1 -ATAACTTAT
69921570 ATAA
1 ATAA
69921574 TACTTAAATA
Statistics
Matches: 296, Mismatches: 50, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
7 2 0.01
8 45 0.15
9 241 0.81
10 8 0.03
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.37
Consensus pattern (9 bp):
ATAACTTAT
Found at i:69921256 original size:44 final size:44
Alignment explanation
Indices: 69921219--69921546 Score: 424
Period size: 44 Copynumber: 7.2 Consensus size: 44
69921209 TAACTTACAA
** * * * *
69921219 AACTTACATAACTTATGTAACTTAGATAA-ATATATAACTTATAT
1 AACTTACATAACTTACATAACTTATATAACTTAGATAA-ATATAT
*
69921263 AACTTACATAACTTATATAACTTATATAACTTAGATAAATATAT
1 AACTTACATAACTTACATAACTTATATAACTTAGATAAATATAT
69921307 AACTTACATAACTTACATAACTTATATAACTTAGATAAATATAT
1 AACTTACATAACTTACATAACTTATATAACTTAGATAAATATAT
*
69921351 AACTTATATAACTTACATAACTTATATAACTTAGATAAATATAT
1 AACTTACATAACTTACATAACTTATATAACTTAGATAAATATAT
*
69921395 AACTTACATAACTTACATAACTTATATAACTTAGATCAATATAT
1 AACTTACATAACTTACATAACTTATATAACTTAGATAAATATAT
* * * * *
69921439 AACTTATATAACTTATATAACTTACATAACTTATATAACTTATAT
1 AACTTACATAACTTACATAACTTATATAACTTAGATAA-ATATAT
*
69921484 AACTTAGATAAATATATAACTTACATAACTTATATAACTTAGATAAATATAT
1 AAC-----T---TACATAACTTACATAACTTATATAACTTAGATAAATATAT
69921536 AACTTACATAA
1 AACTTACATAA
69921547 ATATATATCA
Statistics
Matches: 254, Mismatches: 20, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
44 199 0.78
45 14 0.06
47 1 0.00
50 1 0.00
52 8 0.03
53 31 0.12
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.38
Consensus pattern (44 bp):
AACTTACATAACTTACATAACTTATATAACTTAGATAAATATAT
Found at i:69921320 original size:97 final size:95
Alignment explanation
Indices: 69921208--69921546 Score: 496
Period size: 97 Copynumber: 3.6 Consensus size: 95
69921198 AATATTTAAC
* *
69921208 ATAACTTACAAAACTTACATAACTTATGTAACTTAGATAAATATATAACTTATATAACTTACATA
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACTTATATAACTTA-ATA
69921273 ACTTATATAACTTATATAACTTAGATAAATAT
65 ACTTA-ATAACTTATATAACTTAGATAAATAT
69921305 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACTTATATAAC-T--T-A
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACTTATATAACTTAATAA
69921366 C---ATAACTTATATAACTTAGATAAATAT
66 CTTAATAACTTATATAACTTAGATAAATAT
*
69921393 ATAACTTACATAACTTACATAACTTATATAACTTAGATCAATATATAACTTATATAACTTATATA
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACTTATATAACTTA-ATA
* * *
69921458 ACTTACATAACTTATATAACTTATATAACTTAG
65 ACTTA-ATAACTTATATAACTTAGATAA-ATAT
* * *
69921491 ATAA-ATATATAACTTACATAACTTATATAACTTAGATAAATATATAACTTACATAA
1 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACTTATATAA
69921547 ATATATATCA
Statistics
Matches: 222, Mismatches: 10, Indels: 20
0.88 0.04 0.08
Matches are distributed among these distances:
88 83 0.37
89 1 0.00
92 3 0.01
93 3 0.01
96 1 0.00
97 125 0.56
98 6 0.03
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.37
Consensus pattern (95 bp):
ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATATATAACTTATATAACTTAATAA
CTTAATAACTTATATAACTTAGATAAATAT
Found at i:69921586 original size:27 final size:26
Alignment explanation
Indices: 69921452--69921573 Score: 88
Period size: 26 Copynumber: 4.6 Consensus size: 26
69921442 TTATATAACT
* *
69921452 TATATAACTTACATAACTTATATAA-CT
1 TATATAACTTACATAA-ATATA-AATCA
* *
69921479 TATATAACTTAGATAAATATATAA-CT
1 TATATAACTTACATAAATATA-AATCA
* * * * *
69921505 TACATAACTTATATAACT-TAGATAAA
1 TATATAACTTACATAAATATAAAT-CA
*
69921531 TATATAACTTACATAAATATATATCA
1 TATATAACTTACATAAATATAAATCA
69921557 TATCATAACTTACATAA
1 TAT-ATAACTTACATAA
69921574 TACTTAAATA
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.01
25 2 0.03
26 43 0.55
27 32 0.41
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (26 bp):
TATATAACTTACATAAATATAAATCA
Found at i:69926799 original size:13 final size:14
Alignment explanation
Indices: 69926783--69926811 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69926773 TTCTAAATAT
69926783 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
69926796 TTATAATTGTTTAA
1 TTATAATTGTTTAA
69926810 TT
1 TT
69926812 CAATTCTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:69927252 original size:21 final size:21
Alignment explanation
Indices: 69927225--69927300 Score: 100
Period size: 21 Copynumber: 3.6 Consensus size: 21
69927215 ACTTAGAGCG
*
69927225 GAGGCAGCAGAGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
* *
69927246 GCGGCAGCAGCGAGAGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
69927267 GAGGCA-CGAGCGAGGGAGGCA
1 GAGGCAGC-AGCGAGGGAGGCA
*
69927288 GAGGTAGCAGCGA
1 GAGGCAGCAGCGA
69927301 TGGCAGCAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
20 1 0.02
21 45 0.96
22 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.50, T:0.01
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:69927594 original size:31 final size:31
Alignment explanation
Indices: 69927548--69927614 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
69927538 TGGTTGTATT
* *
69927548 TTTTATGCTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
* * * *
69927579 TTTTATACTATATTTGTTGTATTTGGTTGGA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
69927610 TTTTA
1 TTTTA
69927615 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.57
Consensus pattern (31 bp):
TTTTATACTAAATTTGCTGTATTTGGCTGCA
Found at i:69928905 original size:19 final size:19
Alignment explanation
Indices: 69928872--69928933 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
69928862 TCAACAAAAA
*
69928872 TTATAAAAAAATCAAAATAAT
1 TTAT-AAAAATTCAAAAT-AT
*
69928893 TT-TTAAAATTCAAAATAT
1 TTATAAAAATTCAAAATAT
*
69928911 TTATAAAAATTCTAAA-AT
1 TTATAAAAATTCAAAATAT
69928929 TTATA
1 TTATA
69928934 TCTTTAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 11 0.31
19 22 0.61
20 1 0.03
21 2 0.06
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
TTATAAAAATTCAAAATAT
Found at i:69929868 original size:41 final size:41
Alignment explanation
Indices: 69929823--69929907 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
69929813 GACAGATTAC
*
69929823 ATTCTTAGAAAAACTCAAGTTTGAAATTTGAAAATGACATT
1 ATTCTTAGAAAAACTCAAGTTTAAAATTTGAAAATGACATT
*
69929864 ATTCTTAGAAAGACTCAAGTTTAAAATTTGAAAATGACATT
1 ATTCTTAGAAAAACTCAAGTTTAAAATTTGAAAATGACATT
69929905 ATT
1 ATT
69929908 AAAAATGTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (41 bp):
ATTCTTAGAAAAACTCAAGTTTAAAATTTGAAAATGACATT
Found at i:69934862 original size:20 final size:20
Alignment explanation
Indices: 69934837--69934886 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
69934827 GTAAGACCAC
*
69934837 TATTGGTAAATTATTAAAAA
1 TATTGGTAAATAATTAAAAA
* *
69934857 TATTGGTAAATAATTAGATA
1 TATTGGTAAATAATTAAAAA
*
69934877 TTTTGGTAAA
1 TATTGGTAAA
69934887 AGCATTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (20 bp):
TATTGGTAAATAATTAAAAA
Found at i:69937944 original size:46 final size:48
Alignment explanation
Indices: 69937822--69937951 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 48
69937812 TGTAACCCGC
69937822 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
69937872 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
69937915 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69937952 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Done.