Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 228 of 438
Found at i:70272931 original size:46 final size:46
Alignment explanation
Indices: 70272881--70273052 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
70272871 TGAGCATCCA
70272881 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
70272927 AACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
70272974 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
70273020 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70273053 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:70273033 original size:93 final size:93
Alignment explanation
Indices: 70272874--70273045 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70272864 GGATGGTTGA
* *
70272874 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
70272939 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
70272967 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70273032 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
70273046 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70275404 original size:17 final size:19
Alignment explanation
Indices: 70275382--70275418 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
70275372 CAAACCATTT
70275382 TTAAATAT-TAT-AAAACA
1 TTAAATATCTATCAAAACA
*
70275399 TTAAATCTCTATCAAAACA
1 TTAAATATCTATCAAAACA
70275418 T
1 T
70275419 CATAAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (19 bp):
TTAAATATCTATCAAAACA
Found at i:70277671 original size:60 final size:61
Alignment explanation
Indices: 70277570--70277691 Score: 192
Period size: 60 Copynumber: 2.0 Consensus size: 61
70277560 TACAAAGAAA
* *
70277570 AAAATGCAAGAAAAGTAGAAAAGACAAGAGAAGCCATAGTAAATGCCAAGTAATTTCTATT
1 AAAATGAAAGAAAAGTAGAAAAGACAAGAGAAGCCAAAGTAAATGCCAAGTAATTTCTATT
* * *
70277631 AAAATGAAAGAACAGTA-AAAAGACAAGAGATGCCAAAGTAAATGCTAAGTAATTTCTATT
1 AAAATGAAAGAAAAGTAGAAAAGACAAGAGAAGCCAAAGTAAATGCCAAGTAATTTCTATT
70277691 A
1 A
70277692 CTCAAGAATG
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
60 41 0.73
61 15 0.27
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.20
Consensus pattern (61 bp):
AAAATGAAAGAAAAGTAGAAAAGACAAGAGAAGCCAAAGTAAATGCCAAGTAATTTCTATT
Found at i:70280233 original size:46 final size:45
Alignment explanation
Indices: 70280081--70280435 Score: 186
Period size: 46 Copynumber: 7.5 Consensus size: 45
70280071 TTTGTGCGTT
* *
70280081 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTCGA-AATGAGAGCC
* * * * * *
70280127 AGTGTAAGATCATGTATGGGACATAGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG-CCTCGAAATGAGAGCC
*
70280175 AGTGTAAGACATGTCTGGGACATGAATCAGCCTCGAAATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAAATG-AGAGCC
* * * * *
70280221 AGTGTAAGACATGTCTGGGACATGCATTTG-TTACGAGA--AGTGTC
1 AGTGTAAGACATGTCTGGGACATGCA-TCGCCT-CGAAATGAGAGCC
* *
70280265 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GAATATATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GCCTCG-A-A-ATGAGAGCC
* * * ** * **
70280315 AATTTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAGTA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GCCTCGA-AATGAGAGCC
* * * *
70280364 AGTGTAAGACCATGTTTAGGACATGGCATCGACTTG--ATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCTCGAAAT-GA-GAGCC
70280411 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
70280436 GCATTGGCAT
Statistics
Matches: 240, Mismatches: 48, Indels: 42
0.73 0.15 0.13
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 18 0.08
46 60 0.25
47 55 0.23
48 27 0.11
49 31 0.13
50 36 0.15
51 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAAATGAGAGCC
Found at i:70280333 original size:50 final size:48
Alignment explanation
Indices: 70280267--70280445 Score: 175
Period size: 49 Copynumber: 3.7 Consensus size: 48
70280257 GAAGTGTCAG
70280267 TGTAAGACCATGTCTGGGACATGGCATCGGCATGAATATATGAGAGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATG-AT-TATGAGAGCTAA
* * * * *
70280317 TTTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAG-TAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAT-GATTATGAGAGCTAA
* * * * * * *
70280365 GTGTAAGACCATGTTTAGGACATGGCATCGACTTGA-T-GGATGAGCCAG
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCATGATTATGA-GAGCTAA
*
70280413 TGTAAGACCATGTCTGGGACATGGCATTGGCAT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAT
70280446 TACACCCTAT
Statistics
Matches: 105, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
46 2 0.02
47 31 0.30
48 6 0.06
49 33 0.31
50 32 0.30
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATGATTATGAGAGCTAA
Found at i:70285720 original size:49 final size:49
Alignment explanation
Indices: 70285603--70285745 Score: 178
Period size: 49 Copynumber: 2.9 Consensus size: 49
70285593 ATACATGTAT
* * * **
70285603 GCTCATATGAGCTATGAATCGGTATGCTCTCACGAGCTGTAAATTGGTAA
1 GCTCATATGAGCTAAGAATCGGTAAGCTCTCACGAGTTG-AAATCAGTAA
* * * *
70285653 GCTCATATGAGCTGAGAATCAGTAAGCTCTTACAAGTTGAAATCAGTAA
1 GCTCATATGAGCTAAGAATCGGTAAGCTCTCACGAGTTGAAATCAGTAA
* *
70285702 GCTCATACGAGCTAAGAATTGGTAAGCTCTCACGAGTTGAAATC
1 GCTCATATGAGCTAAGAATCGGTAAGCTCTCACGAGTTGAAATC
70285746 GATAATCCTT
Statistics
Matches: 78, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
49 46 0.59
50 32 0.41
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (49 bp):
GCTCATATGAGCTAAGAATCGGTAAGCTCTCACGAGTTGAAATCAGTAA
Found at i:70285736 original size:25 final size:24
Alignment explanation
Indices: 70285611--70285737 Score: 78
Period size: 25 Copynumber: 5.1 Consensus size: 24
70285601 ATGCTCATAT
* *
70285611 GAGCTATGAATCGGTATGCTCTCAC
1 GAGCTAAGAATCGGTAAGCTCT-AC
* * *
70285636 GAGCTGTA-AATTGGTAAGCTCATAT
1 GAGCT-AAGAATCGGTAAGCTC-TAC
* *
70285661 GAGCTGAGAATCAGTAAGCTCTTAC
1 GAGCTAAGAATCGGTAAGCTC-TAC
* * * *
70285686 AAGTTGA-AATCAGTAAGCTCATAC
1 GAGCTAAGAATCGGTAAGCTC-TAC
*
70285710 GAGCTAAGAATTGGTAAGCTCTCAC
1 GAGCTAAGAATCGGTAAGCTCT-AC
70285735 GAG
1 GAG
70285738 TTGAAATCGA
Statistics
Matches: 79, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
24 22 0.28
25 56 0.71
26 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (24 bp):
GAGCTAAGAATCGGTAAGCTCTAC
Found at i:70287117 original size:3 final size:3
Alignment explanation
Indices: 70287104--70287659 Score: 278
Period size: 3 Copynumber: 186.3 Consensus size: 3
70287094 ATTAGTTTAT
* * * *
70287104 TTA TAA TTA TTA TT- TTA CTA TTA CTTA -TA TTTA TTA TCA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA TTA
* * *
70287149 TTA TTA CTA TTA TATA CTA TTA TTA TT- TTCA CTA TT- TTCA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TT-A TTA TTA TT-A TTA TTA
* * * * * *
70287195 TTA TTA CTA TTT TTA TTT TTA TTT TTA TT- TT- TTA CTA CTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
** ** * * * * *
70287242 TTA TCG TTA TTA CCA TTA TTA TTG CTA CTA TTC TTA TTA TCT- TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
* * * *
70287287 TTA CTA TTA TTA TTA TTA TT- TTA TTTA TTA TCA TTA TTA TTC CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * * *
70287332 CTA TTA TTA TT- TT- TTA CTA TTG TTA TTTA TTG TCA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * * * *
70287376 TTA TGA CTA TCA TTA TTA TTA TT- TTA TTTA TTA TCA TTA TTT TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * * * * *
70287421 CTA TTA TTA TTA TT- TTT TTA CTG CTA ATA TTTA TTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
* * * * *** *
70287466 TTA CTA TTA -TA TTT TTA TTA CTA CTA TTA CGG TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
70287513 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
70287561 TTG TTG TTG TTA TTA TTA TTA TTA TTA TTA TCA TCA -TC TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * * * * * * * *
70287606 TTA CTA TTA TCA TTT TTG TAA TTA CTA TTA CTA TT- GTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
70287653 TTA TTA T
1 TTA TTA T
70287660 ATTTTCATCT
Statistics
Matches: 413, Mismatches: 115, Indels: 50
0.71 0.20 0.09
Matches are distributed among these distances:
2 26 0.06
3 359 0.87
4 28 0.07
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:70287484 original size:92 final size:92
Alignment explanation
Indices: 70287289--70287485 Score: 270
Period size: 92 Copynumber: 2.1 Consensus size: 92
70287279 TATCTTTTTT
* *
70287289 ACTATTATTATTATTATTTTATTTATTATCATTATTATTCCTACTATTATTATTTTTTACTATTG
1 ACTATTATTATTATTATTTTATTTATTATCATTATTATTCCTACTATTATTATTTTTTACTACTA
* * *
70287354 TTATTTATTGTCATTATCATTATTATG
66 ATATTTATTATCATTATCATTACTATG
* * * *
70287381 ACTATCATTATTATTATTTTATTTATTATCATTATTTTTCCTATTATTATTATTTTTTTACTGCT
1 ACTATTATTATTATTATTTTATTTATTATCATTATTATTCCTACTATTATTA-TTTTTTACTACT
* *
70287446 AATATTTATTATCATTATTATTACTATT
65 AATATTTATTATCATTATCATTACTATG
*
70287474 A-TATTTTTATTA
1 ACTATTATTATTA
70287486 CTACTATTAC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
92 58 0.64
93 33 0.36
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.61
Consensus pattern (92 bp):
ACTATTATTATTATTATTTTATTTATTATCATTATTATTCCTACTATTATTATTTTTTACTACTA
ATATTTATTATCATTATCATTACTATG
Found at i:70295802 original size:28 final size:29
Alignment explanation
Indices: 70295713--70295872 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
70295703 AATTTAAGCC
* *** * *
70295713 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** * * *
70295742 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * *
70295771 TGCACACATAGTGTCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
70295799 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
70295828 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
70295857 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
70295873 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 25 0.22
29 89 0.78
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:70295823 original size:57 final size:58
Alignment explanation
Indices: 70295713--70295872 Score: 187
Period size: 57 Copynumber: 2.8 Consensus size: 58
70295703 AATTTAAGCC
*** * * ** * * *
70295713 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
* * *
70295771 TGCACACATAGTGTCATAT-TTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
*
70295828 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
70295873 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
57 45 0.53
58 40 0.47
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
Found at i:70297643 original size:64 final size:64
Alignment explanation
Indices: 70297547--70297667 Score: 206
Period size: 64 Copynumber: 1.9 Consensus size: 64
70297537 TCACACATCT
*
70297547 AGTTAGGAGAATTTGATTCATTTCGATCATAGCATCCTAATTATTTGGCATAAGCATCACATTC
1 AGTTAGGAGAATTTGATTCATTTCGATCATAGCATCCTAATTATTAGGCATAAGCATCACATTC
* * *
70297611 AGTTAGGAGCATTTGATTCATTTCGATTATAGCATCCTATTTATTAGGCATAAGCAT
1 AGTTAGGAGAATTTGATTCATTTCGATCATAGCATCCTAATTATTAGGCATAAGCAT
70297668 AGATACATGA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.37
Consensus pattern (64 bp):
AGTTAGGAGAATTTGATTCATTTCGATCATAGCATCCTAATTATTAGGCATAAGCATCACATTC
Found at i:70297788 original size:44 final size:42
Alignment explanation
Indices: 70297740--70298291 Score: 224
Period size: 44 Copynumber: 12.5 Consensus size: 42
70297730 TTTACAGCCA
* *
70297740 TATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCT
1 TATCT-TCTGAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTCT
* *
70297784 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGGATTGAAGATCT
1 TATCTT-CTGAGGTAGCAAGG-AGCAGATTGAAGATTGAAG-TCT
* * * * *
70297829 TATCTCCCTAAGCAGTAG--TGGAGCTA-ATCGAAGA-TGACAAATCT
1 TATCT-TCTGAG--GTAGCAAGGAGC-AGATTGAAGATTG--AAGTCT
* *
70297873 TATCTTCCCGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCT
1 TATCTT-CTGAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTCT
*
70297917 TATCTTCCTGAGGTAGCAAGGAAGCAGACT-AAGGATTGAAGATCT
1 TATCTT-CTGAGGTAGCAAGG-AGCAGATTGAA-GATTGAAG-TCT
* * * * *
70297962 TATCTCCCTAAGCAGTAG--TGGAGCAGATCGAAGATGGCGAA-TCT
1 TATCT-TCTGAG--GTAGCAAGGAGCAGATTGAAGAT--TGAAGTCT
* * * ** *****
70298006 TATCTTCCCGAGGTAGCAGGGGGGCAGATTTTAGCCACCAGTCT
1 TATCTT-CTGAGGTAGCA-AGGAGCAGATTGAAGATTGAAGTCT
* * * *
70298050 TATCTCTCTAAGGTAGCAAAAGAGCAGGTTGAAGATTGAAATCT
1 TATCT-TCTGAGGTAGC-AAGGAGCAGATTGAAGATTGAAGTCT
* *
70298094 TATCTTCCTGAGGTAGCAATGAAGCAGACTGAAGATTGAAGATCT
1 TATCTT-CTGAGGTAGCAA-GGAGCAGATTGAAGATTGAAG-TCT
* * ** * * * *
70298139 TATCTCCCTAAAAAATAG--TGGAGCAGATCGAAGATGGCAAATCT
1 TATCT-TCT--GAGGTAGCAAGGAGCAGATTGAAGATTG-AAGTCT
* * ** ***** *
70298183 TATCTTCTGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGCCT
1 TATCTTCTGAGGTAGCA-AGGAGCAGATTGAAGATTGAAGTCT
* *
70298226 TATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGACTGAAGTCT
1 TATCT-TCTGAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTCT
70298270 TATCTTCCTGAGGTAGCAAGGA
1 TATCTT-CTGAGGTAGCAAGGA
70298292 AGTAGGTTAA
Statistics
Matches: 368, Mismatches: 96, Indels: 89
0.67 0.17 0.16
Matches are distributed among these distances:
41 4 0.01
42 8 0.02
43 25 0.07
44 247 0.67
45 67 0.18
46 5 0.01
47 12 0.03
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (42 bp):
TATCTTCTGAGGTAGCAAGGAGCAGATTGAAGATTGAAGTCT
Found at i:70297928 original size:133 final size:133
Alignment explanation
Indices: 70297750--70298023 Score: 505
Period size: 133 Copynumber: 2.1 Consensus size: 133
70297740 TATCTCTCTA
*
70297750 AGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
1 AGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
70297815 AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCTA-ATCGAAGATGACAAATCTTATCTT
66 AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGC-AGATCGAAGATGACAAATCTTATCTT
70297879 CCCG
130 CCCG
70297883 AGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
1 AGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
* *
70297948 AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTC
66 AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAATCTTATCTTC
70298013 CCG
131 CCG
70298016 AGGTAGCA
1 AGGTAGCA
70298024 GGGGGGCAGA
Statistics
Matches: 137, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
132 1 0.01
133 136 0.99
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (133 bp):
AGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAATCTTATCTTC
CCG
Found at i:70298053 original size:177 final size:175
Alignment explanation
Indices: 70297882--70298359 Score: 722
Period size: 176 Copynumber: 2.7 Consensus size: 175
70297872 TTATCTTCCC
70297882 GAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
1 GAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
*
70297947 AAGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTT
66 AA-GATTGAAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTT
* *
70298012 CCCGAGGTAGCAGGGGGGCAGATTTTAGCCACCAGTCTTATCTCTCT
130 -CCGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGTCTTATCTCTCT
* * * *
70298059 AAGGTAGCAAAAGAGCAGGTTGAAGATTGAAATCTTATCTTCCTGAGGTAGCAATGAAGCAGACT
1 GAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
* * *
70298124 GAAGATTGAAGATCTTATCTCCCTAAAAAATAGTGGAGCAGATCGAAGATGGCAAATCTTATCTT
66 -AAGATTGAAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTT
* *
70298189 CTGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCT
130 CCGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGTCTTATCTCTCT
* * **
70298235 GAGGTAGCAAGAGAGCAGGTTGAAGACTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGGTT
1 GAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
* * * * * *
70298300 AATGATTGTAGATCTTATCTCCCTAAGTAGTATTGGAGCAGATTGAAGACGACGAATCTT
66 AA-GATTGAAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTT
70298360 GTCTCCCTAA
Statistics
Matches: 270, Mismatches: 29, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
175 2 0.01
176 147 0.54
177 119 0.44
178 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (175 bp):
GAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
AAGATTGAAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTC
CGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGTCTTATCTCTCT
Found at i:70298076 original size:133 final size:133
Alignment explanation
Indices: 70297750--70298068 Score: 435
Period size: 133 Copynumber: 2.4 Consensus size: 133
70297740 TATCTCTCTA
* *** *
70297750 AGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
1 AGGTAGCAAGAGAGCAGATTGAAGACACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
70297815 AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCTAATCGAAGATGACAAATCTTATCTTC
66 AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCTAATCGAAGATGACAAATCTTATCTTC
70297880 CCG
131 CCG
* ***
70297883 AGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
1 AGGTAGCAAGAGAGCAGATTGAAGACACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
* *
70297948 AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGC-AGATCGAAGATGGCGAATCTTATCTT
66 AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCTA-ATCGAAGATGACAAATCTTATCTT
70298012 CCCG
130 CCCG
* * * ** * * *
70298016 AGGTAGCAGGGGGGCAGATTTTAGCCACCAGTCTTATC-TCTCTAAGGTAGCAA
1 AGGTAGCAAGAGAGCAGATTGAAGACACAAGTCTTATCTTC-CTGAGGTAGCAA
70298069 AAGAGCAGGT
Statistics
Matches: 169, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
132 3 0.02
133 166 0.98
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (133 bp):
AGGTAGCAAGAGAGCAGATTGAAGACACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
AGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCTAATCGAAGATGACAAATCTTATCTTC
CCG
Found at i:70298381 original size:44 final size:43
Alignment explanation
Indices: 70298311--70298866 Score: 368
Period size: 44 Copynumber: 12.9 Consensus size: 43
70298301 ATGATTGTAG
* *
70298311 ATCTTATCTCCCTAAGTAGTATTGGAGCAGATTGAAGACGACGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-A
* * * *
70298355 ATCTTGTCTCCCTAAGCAGTAGTGGAGC-TATTTAAGAC-ACC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACA
* * * ** * *
70298396 ATCCTATCTCCCTAAGCAGTAGTGAAGAAGGCT-ATAGACTATA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGA-AGACGACA
* ** * * * *
70298439 GATCTTATCTCCCTAAGCTGTAGTGGAATAGATCGAATATGGAAA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-CGACA
* * * * * *
70298484 ATCTTGTCTCCCTAAGCAGTAGTGGAGTATATTTAAG-CCACC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACA
* * * ** ** *
70298526 ATCCTATCTCCCTAAGCAATAGTGGAGTAGGCTGAAGATTATA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACA
* ** * *
70298569 GATCTTTTCTCCCTAAGCAGTAGTGGAGTGGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-A
* * * * *
70298614 ATCTTGTCTCCTTAAGCAGTAGTGGAGCAGATTTAAG-CCACC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACA
* * ** * **
70298656 ATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTACA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACA
* * * * *
70298699 GATCTTATTTCTCTAAGTAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-A
* * * * *
70298744 ATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATTTAAG-CCACC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACA
* * ** * **
70298786 ATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTACA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACA
*
70298829 GATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTGAAG
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAG
70298867 TTACAAATCT
Statistics
Matches: 383, Mismatches: 115, Indels: 28
0.73 0.22 0.05
Matches are distributed among these distances:
41 25 0.07
42 98 0.26
43 18 0.05
44 237 0.62
45 5 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACA
Found at i:70298801 original size:86 final size:87
Alignment explanation
Indices: 70298311--70298812 Score: 267
Period size: 86 Copynumber: 5.8 Consensus size: 87
70298301 ATGATTGTAG
* * * * * * * *
70298311 ATCTTATCTCCCTAAGTAGTATTGGAGCAGATTGAAGACGACGA-ATCTTGTCTCCCTAAGCAGT
1 ATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGACCAC-ACATCCTATCTCCCTAAGCAGT
* ** *
70298375 AGTGGAGC-TATTTAAGAC--ACC
65 AGTGGAGCAGATCGAAGACGGA-A
* * * * ** * * * * *
70298396 ATCCTATCTCCCTAAGCAGTAGTGAAGAAG-GCTATAGACTATAGATCTTATCTCCCTAAGCTGT
1 ATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTA-AGACCACACATCCTATCTCCCTAAGCAGT
** * *
70298460 AGTGGAATAGATCGAATATGGAAA
65 AGTGGAGCAGATCGAAGACGG-AA
* *
70298484 ATCTTGTCTCCCTAAGCAGTAGTGGAGTATATTTAAG-CCAC-CATCCTATCTCCCTAAGCAATA
1 ATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGACCACACATCCTATCTCCCTAAGCAGTA
* * **
70298547 GTGGAGTAG-GCTGAAGA-TTATA
66 GTGGAGCAGATC-GAAGACGGA-A
* * ** ** * * *
70298569 GATCTTTTCTCCCTAAGCAGTAGTGGAGTGGATCGAAGACGGCGA-ATCTTGTCTCCTTAAGCAG
1 -ATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGACCAC-ACATCCTATCTCCCTAAGCAG
** * *
70298633 TAGTGGAGCAGATTTAAG-C-CACC
64 TAGTGGAGCAGATCGAAGACGGA-A
* * ** * ** * * * * *
70298656 ATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTACAGATCTTATTTCTCTAAGTAGTA
1 ATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGACCACACATCCTATCTCCCTAAGCAGTA
*
70298721 GTGGAGCAGATCGAAGACGGCGA
66 GTGGAGCAGATCGAAGACGG-AA
* *
70298744 ATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATTTAAG-CCAC-CATCCTATCTCCCTAAGCAGTA
1 ATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGACCACACATCCTATCTCCCTAAGCAGTA
70298807 GTGGAG
66 GTGGAG
70298813 TAGGCTAAAG
Statistics
Matches: 308, Mismatches: 90, Indels: 37
0.71 0.21 0.09
Matches are distributed among these distances:
84 3 0.01
85 57 0.19
86 152 0.49
87 8 0.03
88 85 0.28
89 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (87 bp):
ATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGACCACACATCCTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACGGAA
Found at i:70298857 original size:130 final size:130
Alignment explanation
Indices: 70298309--70298858 Score: 814
Period size: 130 Copynumber: 4.2 Consensus size: 130
70298299 TAATGATTGT
* * * *
70298309 AGATCTTATCTCCCTAAGTAGTATTGGAGCAGATTGAAGACGACGAATCTTGTCTCCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAG
* * * * * * *
70298374 TAGTGGAGC-TATTTAAGACACCATCCTATCTCCCTAAGCAGTAGTGAAGAAGGCTATAGACTAT
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTAC
* ** * * **
70298438 AGATCTTATCTCCCTAAGCTGTAGTGGAATAGATCGAATATGGAAAATCTTGTCTCCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAG
* * * * *
70298503 TAGTGGAGTATATTTAAGCCACCATCCTATCTCCCTAAGCAATAGTGGAGTAGGCTGAAGATTAT
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTAC
* ** *
70298568 AGATCTTTTCTCCCTAAGCAGTAGTGGAGTGGATCGAAGACGGCGAATCTTGTCTCCTTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAG
70298633 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTAC
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTAC
* * * *
70298698 AGATCTTATTTCTCTAAGTAGTAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTCCCTAAGTAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAG
70298763 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTAC
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTAC
70298828 AGATCTTATCTCCCTAAGCAGTAGTGGAGCA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCA
70298859 AATTGAAGTT
Statistics
Matches: 376, Mismatches: 44, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
129 62 0.16
130 314 0.84
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (130 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTGTCTCCCTAAGCAG
TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTAC
Found at i:70299462 original size:44 final size:43
Alignment explanation
Indices: 70299190--70299463 Score: 167
Period size: 44 Copynumber: 6.1 Consensus size: 43
70299180 GTTCAAGTCT
* * *
70299190 TATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGACAACTAATCC
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAG-CAAC-AATCC
** **
70299235 TATCTCTATGAAGTTGTAGTAGAGCAGATTAAAGCAACAATCCC
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCAACAAT-CC
* * * * * *
70299279 TATAC-CTCTGAAGTTGCAGTAG-GTCGGATCAAATCTACCACTACAAGTCT
1 TAT-CTCCCTGAAGTTACAGTAGAG-CAGAT-TAA---AGCA--ACAA-TCC
* * *
70299329 TATCTCCCTGAAGATACAGTAGAGCAGACTAAAG-ATACCAATCT
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCA-A-CAATCC
* ** * *
70299373 TATCCCCCTGAAGTTACAGCGGAGCAGATTGAAGCTACTAATCC
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCAAC-AATCC
* * *
70299417 TATCTCCATGAAGTTGCAGTAGAGTAGATTAAAGCAACAAGTCC
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCAACAA-TCC
70299461 TAT
1 TAT
70299464 ACCTCTGAAG
Statistics
Matches: 177, Mismatches: 36, Indels: 33
0.72 0.15 0.13
Matches are distributed among these distances:
43 7 0.04
44 102 0.58
45 34 0.19
46 1 0.01
48 3 0.02
49 3 0.02
50 25 0.14
51 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (43 bp):
TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCAACAATCC
Found at i:70299522 original size:28 final size:28
Alignment explanation
Indices: 70299482--70299543 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
70299472 AGTTGCATGA
70299482 AGTGGATCGAAGCAACAAGACGCAGTGG
1 AGTGGATCGAAGCAACAAGACGCAGTGG
70299510 AGTGGATCGAAGCAACAAGACGCAGTGG
1 AGTGGATCGAAGCAACAAGACGCAGTGG
*
70299538 ACTGGA
1 AGTGGA
70299544 ATGAGGCTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.35, T:0.11
Consensus pattern (28 bp):
AGTGGATCGAAGCAACAAGACGCAGTGG
Found at i:70300839 original size:3 final size:3
Alignment explanation
Indices: 70300831--70301262 Score: 204
Period size: 3 Copynumber: 144.3 Consensus size: 3
70300821 ATTAGTTTAT
* *
70300831 TTA TTA TTA TTA TTA TT- TTA CTA TTA CTTA -TA TTTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA
* * * * * *
70300876 CTA TTA CTA CTA TTA -TA TTA CTA TTA TTA TT- TTCG CTA TT- TTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TT-A
* * * *
70300920 TTA TTA TTA TTA CTA TTA TTA TTT TTA TTA TTTA CTA CTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA -TTA
** ** * * * * * * * *
70300967 TTA TCG TTA TTA CCA ATA CTA TTG CTA CTA TTC TAA TTA TCT- TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
* * * * *
70301012 TTA CTA TTA TTA TTA TT- TTA TATA TTA TCA TTA TTA TTC CTA CTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
* * * * *
70301057 TTA TTA TT- TTT TTA CTA TTA TTA TTTA TTG TCA TTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
** * * * * *
70301102 CGA CTA TCA TTA TTA TTA TT- TTA TTTA TTA TCA TTA TTA TTC CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * *
70301147 TTA TTA TTA TT- TT- TTA CTG CTA ATA TTTA TTT TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * *
70301191 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTG TAA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
70301239 CTA TT- CTA TTA TTA CTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
70301263 ATTTTCATCT
Statistics
Matches: 320, Mismatches: 87, Indels: 44
0.71 0.19 0.10
Matches are distributed among these distances:
2 22 0.07
3 272 0.85
4 26 0.08
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:70301277 original size:17 final size:16
Alignment explanation
Indices: 70301257--70301343 Score: 50
Period size: 17 Copynumber: 5.8 Consensus size: 16
70301247 TTATTACTAT
70301257 TATTATATTTTCATCTA
1 TATTATATTTT-ATCTA
70301274 TATT-TATTTT-T-T-
1 TATTATATTTTATCTA
*
70301286 TA-T-TA-CTTATCTA
1 TATTATATTTTATCTA
70301299 T-TTATATTTCTTATCTA
1 TATTATA-TT-TTATCTA
70301316 T-TTATATTTTCAT-TA
1 TATTATATTTT-ATCTA
70301331 TTATTATATTTTA
1 -TATTATATTTTA
70301344 GGTATTATAT
Statistics
Matches: 57, Mismatches: 2, Indels: 23
0.70 0.02 0.28
Matches are distributed among these distances:
10 2 0.04
11 4 0.07
12 3 0.05
13 3 0.05
14 3 0.05
15 4 0.07
16 12 0.21
17 26 0.46
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (16 bp):
TATTATATTTTATCTA
Found at i:70301324 original size:23 final size:23
Alignment explanation
Indices: 70301272--70301322 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
70301262 TATTTTCATC
*
70301272 TATATTTATTTTTTTATTACTTA
1 TATATTTATTTTCTTATTACTTA
* *
70301295 TCTATTTATATTTCTTATCTATTTA
1 TATATTTAT-TTTCTTAT-TACTTA
70301320 TAT
1 TAT
70301323 TTTCATTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
23 8 0.36
24 7 0.32
25 7 0.32
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (23 bp):
TATATTTATTTTCTTATTACTTA
Found at i:70301349 original size:14 final size:14
Alignment explanation
Indices: 70301332--70301379 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
70301322 TTTTCATTAT
70301332 TATTATATTTTAGG
1 TATTATATTTTAGG
*
70301346 TATTATA-TCTA--
1 TATTATATTTTAGG
70301357 TATTTATATTTTAGG
1 TA-TTATATTTTAGG
70301372 TATTATAT
1 TATTATAT
70301380 CTATATTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 2 0.07
12 5 0.18
13 6 0.21
14 13 0.46
15 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.58
Consensus pattern (14 bp):
TATTATATTTTAGG
Found at i:70301349 original size:26 final size:26
Alignment explanation
Indices: 70301320--70301442 Score: 75
Period size: 26 Copynumber: 4.7 Consensus size: 26
70301310 TATCTATTTA
70301320 TATTTTCATTATTATTATATTTTAGG
1 TATTTTCATTATTATTATATTTTAGG
*
70301346 TATTAT-ATCTA-TATTTATATTTTAGG
1 TATTTTCAT-TATTA-TTATATTTTAGG
*
70301372 TATTAT-ATCTA-TATT-TATATTTAGG
1 TATTTTCAT-TATTATTATAT-TTTAGG
70301397 TATTAATATCATTATT-TTACTATTGTTA--
1 TATT--T-TCATTATTATTA-TATT-TTAGG
70301425 TATTTTTCA-TATTATTAT
1 TA-TTTTCATTATTATTAT
70301443 TATTATCATC
Statistics
Matches: 82, Mismatches: 2, Indels: 27
0.74 0.02 0.24
Matches are distributed among these distances:
24 3 0.04
25 21 0.26
26 38 0.46
27 1 0.01
28 7 0.09
29 6 0.07
30 6 0.07
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (26 bp):
TATTTTCATTATTATTATATTTTAGG
Found at i:70306426 original size:46 final size:46
Alignment explanation
Indices: 70306356--70306525 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
70306346 TGTAACCCGC
70306356 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * * *
70306402 CCATAAGTGAACTTGGACTTAACTCAACAAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * *
70306448 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
70306495 CCATAAGTGAACTCGGGCTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
70306526 TTCAGATGCT
Statistics
Matches: 98, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 58 0.59
47 27 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:70306534 original size:93 final size:93
Alignment explanation
Indices: 70306364--70306534 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
70306354 GCCCATAAGT
* * *
70306364 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTTGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
70306429 CAAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCAGATGCCTAGTTACATCTCTC
* *
70306457 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
70306522 CGAGTTCAGATGC
66 CAAGCTCAGATGC
70306535 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCAGATGCCTAGTTACATCTCTC
Found at i:70311233 original size:14 final size:15
Alignment explanation
Indices: 70311209--70311249 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
70311199 TCATTTTGTA
70311209 AATGTATTAAATATC
1 AATGTATTAAATATC
*
70311224 AATG-ATTAAATATT
1 AATGTATTAAATATC
70311238 AAT-TAATTAAAT
1 AATGT-ATTAAAT
70311250 CTATAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.41
Consensus pattern (15 bp):
AATGTATTAAATATC
Found at i:70319693 original size:19 final size:18
Alignment explanation
Indices: 70319666--70319704 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
70319656 ATTTCCCTCA
*
70319666 TTCTCATTTTTCTTTTATT
1 TTCTCA-TTTTATTTTATT
*
70319685 TTCTTATTTTATTTTATT
1 TTCTCATTTTATTTTATT
70319703 TT
1 TT
70319705 TTGTTTTGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (18 bp):
TTCTCATTTTATTTTATT
Found at i:70320567 original size:20 final size:20
Alignment explanation
Indices: 70320542--70320579 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70320532 CATATCCAAC
70320542 AAAAGAAAA-ATAAAAAGAAA
1 AAAAGAAAAGA-AAAAAGAAA
70320562 AAAAGAAAAGAAAAAAGA
1 AAAAGAAAAGAAAAAAGA
70320580 TAGAGGTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (20 bp):
AAAAGAAAAGAAAAAAGAAA
Found at i:70320570 original size:14 final size:13
Alignment explanation
Indices: 70320542--70320577 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
70320532 CATATCCAAC
*
70320542 AAAAGAAAAATA-
1 AAAAGAAAAAAAG
70320554 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
70320567 AAAAGAAAAAA
1 AAAAGAAAAAA
70320578 GATAGAGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:70320608 original size:16 final size:17
Alignment explanation
Indices: 70320589--70320626 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
70320579 ATAGAGGTGG
70320589 GAAAATAAAAA-AAAAA
1 GAAAATAAAAACAAAAA
*
70320605 GAAAATAAAAACAATAA
1 GAAAATAAAAACAAAAA
70320622 GAAAA
1 GAAAA
70320627 AGGAGGAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08
Consensus pattern (17 bp):
GAAAATAAAAACAAAAA
Found at i:70321600 original size:38 final size:38
Alignment explanation
Indices: 70321557--70321647 Score: 164
Period size: 38 Copynumber: 2.3 Consensus size: 38
70321547 GTAATTAAGG
70321557 TTTAAATAAACTAAAACATAACTAAATTAAATTAATTA
1 TTTAAATAAACTAAAACATAACTAAATTAAATTAATTA
70321595 TTTAAATAAACTAAAACATAACTAAATTAAATTAATTA
1 TTTAAATAAACTAAAACATAACTAAATTAAATTAATTA
70321633 TCTTATAATAAACTA
1 T-TTA-AATAAACTA
70321648 TATATATGAA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
38 39 0.76
39 3 0.06
40 9 0.18
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (38 bp):
TTTAAATAAACTAAAACATAACTAAATTAAATTAATTA
Found at i:70326139 original size:93 final size:93
Alignment explanation
Indices: 70326027--70326197 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
70326017 GCCCATAAGT
* *
70326027 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70326092 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70326120 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70326185 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70326198 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70326213 original size:46 final size:46
Alignment explanation
Indices: 70326019--70326199 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
70326009 TGTAACCCGC
* * *
70326019 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
70326065 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
70326115 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
70326158 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
70326200 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:70328620 original size:30 final size:30
Alignment explanation
Indices: 70328576--70328664 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
70328566 CAAAGATAAC
70328576 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
70328605 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
70328635 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
70328665 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:70328624 original size:15 final size:15
Alignment explanation
Indices: 70328576--70328655 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
70328566 CAAAGATAAC
*
70328576 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
70328590 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
70328605 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
70328620 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
70328635 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
70328650 AAGAAA
1 AAGAAA
70328656 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:70328664 original size:15 final size:15
Alignment explanation
Indices: 70328587--70328664 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
70328577 AGAAAACCGA
70328587 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
70328602 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
70328616 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
70328631 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
70328647 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
70328662 ATA
1 ATA
70328665 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70331723 original size:93 final size:93
Alignment explanation
Indices: 70331611--70331782 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70331601 GCCCATAAGT
* *
70331611 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70331676 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70331704 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70331769 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
70331783 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70331778 original size:46 final size:46
Alignment explanation
Indices: 70331603--70331778 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
70331593 TGTAACCCGC
* * *
70331603 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
70331649 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
70331699 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
70331742 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70331779 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:70336695 original size:27 final size:27
Alignment explanation
Indices: 70336665--70336756 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
70336655 ATTACCAAAG
* * *
70336665 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
70336692 TACCATCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
70336719 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCGTTT
70336746 TACCCTCGATT
1 TACCCTCGATT
70336757 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:70336818 original size:27 final size:25
Alignment explanation
Indices: 70336788--70336885 Score: 97
Period size: 27 Copynumber: 3.7 Consensus size: 25
70336778 TGTAGGATAG
*
70336788 AATTACCAAAATACCACTGGTTTGAGA
1 AATTACCAAAATACC-CTGATTTGA-A
* *
70336815 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-GATTTG-AA
*
70336842 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATA-CCCTGATTT-GAA
*
70336869 AATTACAAAAATACCCT
1 AATTACCAAAATACCCT
70336886 TGACTTTTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
26 6 0.10
27 49 0.82
28 5 0.08
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (25 bp):
AATTACCAAAATACCCTGATTTGAA
Found at i:70337033 original size:27 final size:27
Alignment explanation
Indices: 70336990--70337063 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
70336980 AAATGACTAA
*
70336990 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
70337017 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
70337044 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
70337064 TAATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:70337960 original size:24 final size:24
Alignment explanation
Indices: 70337877--70337960 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
70337867 GAGGAAGTGC
*
70337877 TAAAAGGGCTCTGCCCCAGTTTACT
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
70337902 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
70337926 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
70337950 TAAAAGAGGCT
1 TAAAAG-GGCT
70337961 AAGCCTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.21
25 38 0.72
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:70338154 original size:42 final size:42
Alignment explanation
Indices: 70338095--70338186 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
70338085 TAGTCTCCCC
*
70338095 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
70338137 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
70338179 AAATGGGC
1 AAATGGGC
70338187 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:70341742 original size:8 final size:9
Alignment explanation
Indices: 70341715--70341745 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
70341705 GTCATTTTGG
70341715 TGATAGTTTT
1 TGAT-GTTTT
70341725 TGATGTTTT
1 TGATGTTTT
70341734 TGATGTTTT
1 TGATGTTTT
70341743 TGA
1 TGA
70341746 GATCCTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.16, C:0.00, G:0.23, T:0.61
Consensus pattern (9 bp):
TGATGTTTT
Found at i:70342655 original size:50 final size:49
Alignment explanation
Indices: 70342522--70342715 Score: 248
Period size: 49 Copynumber: 4.0 Consensus size: 49
70342512 TATGGCGTTG
* *
70342522 ATATGATATCCCATGTAAGACCATGTCTGGTACATGGCATTGGCATCGAA
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG-A
*
70342572 ATATGAGA-CCCATGTAAGACCATTTCTGGGACATGGCATTGGCATCGA
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA
* *
70342620 CATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTAGCATCGA
1 -ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA
* * * * * **
70342670 GT-GGTGATCCCATGTAAGACCATATCTGGGATATGGTGTTGGCATC
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
70342716 TTATTATGTG
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
48 37 0.29
49 46 0.36
50 44 0.35
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (49 bp):
ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA
Found at i:70344333 original size:13 final size:13
Alignment explanation
Indices: 70344315--70344340 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70344305 TTATTAAAAG
70344315 TTTAATTCAAACA
1 TTTAATTCAAACA
70344328 TTTAATTCAAACA
1 TTTAATTCAAACA
70344341 CTAAGGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTAATTCAAACA
Found at i:70357444 original size:57 final size:56
Alignment explanation
Indices: 70357351--70357483 Score: 153
Period size: 57 Copynumber: 2.3 Consensus size: 56
70357341 CGGTGACGAG
* *
70357351 ATTGGCACTGA-GTGTGCGAGCTTGTAATGTACGGCACTAAGTGTGCGAGTTTGACT
1 ATTGGCACT-ATGTGTGCGAGCTTGTAATATACGGCACTAAGTGTGCGAGATTGACT
* * * *
70357407 ATATGGCACTATGTGTGCGGGCTTG-AATCATATGGCACTAAGTGTGCGTGATTGAGT
1 AT-TGGCACTATGTGTGCGAGCTTGTAAT-ATACGGCACTAAGTGTGCGAGATTGACT
*
70357464 ATTAAGCACTATGTGTGCGA
1 ATT-GGCACTATGTGTGCGA
70357484 ACTCTACACA
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
56 7 0.11
57 58 0.89
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (56 bp):
ATTGGCACTATGTGTGCGAGCTTGTAATATACGGCACTAAGTGTGCGAGATTGACT
Found at i:70357446 original size:29 final size:28
Alignment explanation
Indices: 70357353--70357454 Score: 123
Period size: 29 Copynumber: 3.6 Consensus size: 28
70357343 GTGACGAGAT
* *
70357353 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* * *
70357382 CGGCACTAAGTGTGCGAGTTTGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAATATA
* *
70357410 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
70357439 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70357455 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 24 0.39
29 37 0.61
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:70357461 original size:29 final size:28
Alignment explanation
Indices: 70357353--70357483 Score: 111
Period size: 29 Copynumber: 4.6 Consensus size: 28
70357343 GTGACGAGAT
* * *
70357353 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGATTG-AATATA
* * *
70357382 CGGCACTAAGTGTGCGAGTTTGACTATA
1 TGGCACTAAGTGTGCGAGATTGAATATA
* * *
70357410 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGATTGAAT-ATA
* *
70357439 TGGCACTAAGTGTGCGTGATTGAGTAT-
1 TGGCACTAAGTGTGCGAGATTGAATATA
* *
70357466 TAAGCACTATGTGTGCGA
1 T-GGCACTAAGTGTGCGA
70357484 ACTCTACACA
Statistics
Matches: 83, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
27 1 0.01
28 39 0.47
29 43 0.52
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGATTGAATATA
Found at i:70362450 original size:75 final size:74
Alignment explanation
Indices: 70362358--70362528 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 74
70362348 GTTTTCCTCA
** * * **
70362358 TTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACT
1 TTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAACT
70362422 CAGTATGGAT
65 CAGTATGGAT
* *
70362432 TTGATAATACCATCCCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAACT
1 TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
*
70362497 CATTATGGA-
65 CAGTATGGAT
70362506 -TG--ATACCATACCTACATTTCACA
1 TTGAAATACCATACCTACATTTCACA
70362529 CTTTGCCATG
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
70 20 0.24
73 2 0.02
74 7 0.08
75 56 0.66
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.32
Consensus pattern (74 bp):
TTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTC
AGTATGGAT
Found at i:70362526 original size:35 final size:35
Alignment explanation
Indices: 70362362--70362528 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 35
70362352 TCCTCATTGA
** *
70362362 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
70362397 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
* *
70362437 AATACCATCCCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
70362472 AATACCATACCTACATTTCACAACTCATTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
70362507 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
70362529 CTTTGCCATG
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
35 85 0.75
39 3 0.03
40 26 0.23
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:70376038 original size:35 final size:35
Alignment explanation
Indices: 70375994--70376160 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
70375984 TCCTCATTGA
** *
70375994 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
70376029 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
70376069 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
70376104 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
70376139 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
70376161 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:70376077 original size:75 final size:73
Alignment explanation
Indices: 70375989--70376160 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
70375979 GGTTTTCCTC
** * * **
70375989 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
70376053 TCAGTATGG
65 TCAGTATGG
*
70376062 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
70376127 CTCAGTATGG
64 CTCAGTATGG
70376137 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
70376161 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:70382950 original size:71 final size:71
Alignment explanation
Indices: 70382866--70383029 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70382856 CGATTTGTCT
70382866 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70382931 CTTTCA
66 CTTTCA
70382937 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70383002 CTTTCA
66 CTTTCA
70383008 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70383030 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70383067 original size:71 final size:70
Alignment explanation
Indices: 70382866--70383063 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
70382856 CGATTTGTCT
* * * *
70382866 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70382931 CTTTCA
65 CTTTCA
* * * *
70382937 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70383002 CTTTCA
65 CTTTCA
* *
70383008 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70383064 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70390474 original size:71 final size:71
Alignment explanation
Indices: 70390391--70390554 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70390381 CGATTTATCT
70390391 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70390456 CTTTCA
66 CTTTCA
70390462 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70390527 CTTTCA
66 CTTTCA
70390533 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70390555 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70390592 original size:71 final size:70
Alignment explanation
Indices: 70390391--70390588 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
70390381 CGATTTATCT
* * * *
70390391 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70390456 CTTTCA
65 CTTTCA
* * * *
70390462 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70390527 CTTTCA
65 CTTTCA
* *
70390533 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70390589 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70392150 original size:27 final size:29
Alignment explanation
Indices: 70392120--70392234 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 29
70392110 ACGCAAGAGC
*
70392120 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
70392147 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
70392176 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * ** *
70392206 ATATGTTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
70392235 GTACAATTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 42 0.53
30 29 0.37
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:70392187 original size:30 final size:29
Alignment explanation
Indices: 70392132--70392234 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
70392122 ATAGTGAATC
70392132 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
70392161 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* *
70392191 CGCACACTTAGTGCTATATGTTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
70392220 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70392235 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 42 0.59
30 29 0.41
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:70392224 original size:59 final size:60
Alignment explanation
Indices: 70392131--70392264 Score: 198
Period size: 59 Copynumber: 2.2 Consensus size: 60
70392121 TATAGTGAAT
* * *
70392131 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * * *
70392190 TCGCACACTTAGTGCTATATGTTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
70392250 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
70392265 CAATCTTGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 46 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:70393609 original size:21 final size:23
Alignment explanation
Indices: 70393570--70393612 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
70393560 TCCACACCCA
70393570 TTTTTTTTTCATCATTTTCTTTTT
1 TTTTTTTTTCA-CATTTTCTTTTT
70393594 TTTTTTTTTC-CA-TTTCTTT
1 TTTTTTTTTCACATTTTCTTT
70393613 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
24 10 0.53
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (23 bp):
TTTTTTTTTCACATTTTCTTTTT
Found at i:70397606 original size:30 final size:30
Alignment explanation
Indices: 70397571--70397636 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
70397561 TAATAAATAA
*
70397571 AATAAAACATAATTTAAGGTGATAAAAATT
1 AATAAAACATAAATTAAGGTGATAAAAATT
* *
70397601 AATAAAGCATAAATTAAGGTGATAAAATTT
1 AATAAAACATAAATTAAGGTGATAAAAATT
70397631 AATAAA
1 AATAAA
70397637 TAAAATAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.29
Consensus pattern (30 bp):
AATAAAACATAAATTAAGGTGATAAAAATT
Found at i:70398690 original size:38 final size:38
Alignment explanation
Indices: 70398610--70398693 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 38
70398600 GACTACGAGT
* *
70398610 CGATGAGGTACTGAGTGCCAAATTTACTTCGGCATTGTC
1 CGATGAGGCACTGAGTGCCAAATTTACTTCGG-ATTATC
* * *
70398649 CGATGAGGCACTGGGTGCCAATTTTACTTTGG-TTATAC
1 CGATGAGGCACTGAGTGCCAAATTTACTTCGGATTAT-C
70398687 CGATGAG
1 CGATGAG
70398694 TGTTGGGTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
37 3 0.08
38 8 0.21
39 28 0.72
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (38 bp):
CGATGAGGCACTGAGTGCCAAATTTACTTCGGATTATC
Found at i:70404275 original size:12 final size:13
Alignment explanation
Indices: 70404266--70404294 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
70404256 AACCAAAATC
70404266 AAATAAAAAATAA
1 AAATAAAAAATAA
70404279 AAAT-AAAAATAA
1 AAATAAAAAATAA
70404291 AAAT
1 AAAT
70404295 TTTATTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAATAAAAAATAA
Found at i:70405214 original size:12 final size:12
Alignment explanation
Indices: 70405197--70405229 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
70405187 AGACATACAG
70405197 CCATGTCCTAGC
1 CCATGTCCTAGC
70405209 CCATGTCCTAGC
1 CCATGTCCTAGC
70405221 CCATGTCCT
1 CCATGTCCT
70405230 CACCCGTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.42, G:0.15, T:0.27
Consensus pattern (12 bp):
CCATGTCCTAGC
Found at i:70415306 original size:12 final size:12
Alignment explanation
Indices: 70415289--70415333 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
70415279 GTTTGCTCCA
70415289 AAATCTTGATGT
1 AAATCTTGATGT
*
70415301 AAATCTTGATCT
1 AAATCTTGATGT
**
70415313 AAATCTCAATGT
1 AAATCTTGATGT
70415325 AAATCTTGA
1 AAATCTTGA
70415334 ATCTTGATCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (12 bp):
AAATCTTGATGT
Found at i:70420994 original size:28 final size:28
Alignment explanation
Indices: 70420963--70421032 Score: 140
Period size: 28 Copynumber: 2.5 Consensus size: 28
70420953 ATAGTAAGTC
70420963 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
70420991 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
70421019 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70421033 CAATCTCATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATTAAACT
Found at i:70421590 original size:109 final size:109
Alignment explanation
Indices: 70421414--70421617 Score: 381
Period size: 109 Copynumber: 1.9 Consensus size: 109
70421404 TCCTCTCTTC
*
70421414 TTAAACATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTC
1 TTAAACATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAACAATTC
70421479 AAGTCATTAATCCATGCATATTGGTCGGCTACTTTTATCTTTTA
66 AAGTCATTAATCCATGCATATTGGTCGGCTACTTTTATCTTTTA
* *
70421523 TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTC
1 TTAAACATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAACAATTC
70421588 AAGTCATTAATCCATGCATATTGGTCGGCT
66 AAGTCATTAATCCATGCATATTGGTCGGCT
70421618 GTTAATTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 92 1.00
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (109 bp):
TTAAACATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAACAATTC
AAGTCATTAATCCATGCATATTGGTCGGCTACTTTTATCTTTTA
Found at i:70426837 original size:40 final size:40
Alignment explanation
Indices: 70426742--70426920 Score: 173
Period size: 40 Copynumber: 4.5 Consensus size: 40
70426732 CGAATGGTGT
* * * * *
70426742 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAAA
* *
70426783 CCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* *
70426823 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* * * * * *
70426863 CCGGGCTAATTCTCGAAGACAATT-GTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAAA
*
70426903 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
70426921 ACAATCAGCG
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
40 87 0.76
41 27 0.24
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
Found at i:70426880 original size:80 final size:81
Alignment explanation
Indices: 70426742--70426920 Score: 211
Period size: 80 Copynumber: 2.2 Consensus size: 81
70426732 CGAATGGTGT
* * *
70426742 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGACAATT
* *
70426806 CGTGCGAGTTACCAAAA
66 -GTGCGAATCACCAAAA
* * * *
70426823 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCTCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGACAAT
* *
70426886 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
70426903 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
70426921 ACAATCAGCG
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 54 0.65
81 28 0.34
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGACAATT
GTGCGAATCACCAAAA
Found at i:70429565 original size:46 final size:45
Alignment explanation
Indices: 70429432--70429647 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 45
70429422 TGTGTGAGCT
* * * * *
70429432 AGTGTAAGACATGTCTGGGACATGTATTGGCCAC-ATTATTAGAGC-C
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GA--CGAGCGC
* *
70429478 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGCGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGCGC
*
70429525 TAGTGTAAGACATGTCTGGAACATGCATCGGCCTCGAGACGTAAGC-C
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG--AGCGC
* * * * *
70429572 AGTGTAAGACACGTCTGGGACATGCATC-GACTATGAGATGTG-GC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGCGC
70429616 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
70429648 TACAGATATA
Statistics
Matches: 141, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 64 0.45
47 30 0.21
48 19 0.13
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGCGC
Found at i:70434347 original size:2 final size:2
Alignment explanation
Indices: 70434340--70434380 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
70434330 CAACAATGGA
70434340 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
70434381 ATACCAATCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:70441215 original size:20 final size:21
Alignment explanation
Indices: 70441192--70441240 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
70441182 ACTTTTTTAT
70441192 ATATATTTTAAAATTTT-AAA
1 ATATATTTTAAAATTTTAAAA
* *
70441212 ATAT-TTTTATATTTTTAAAA
1 ATATATTTTAAAATTTTAAAA
70441232 ATATATTTT
1 ATATATTTT
70441241 TGAAAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.40
20 11 0.44
21 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATATTTTAAAATTTTAAAA
Found at i:70441225 original size:18 final size:19
Alignment explanation
Indices: 70441194--70441231 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
70441184 TTTTTTATAT
70441194 ATATTTTAAAA-TTTTAAA
1 ATATTTTAAAATTTTTAAA
* *
70441212 ATATTTTTATATTTTTAAA
1 ATATTTTAAAATTTTTAAA
70441231 A
1 A
70441232 ATATATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATATTTTAAAATTTTTAAA
Found at i:70441256 original size:12 final size:14
Alignment explanation
Indices: 70441219--70441253 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
70441209 AAAATATTTT
*
70441219 TATATTTTTAAAAA
1 TATATTTTTGAAAA
70441233 TATATTTTTGAAAA
1 TATATTTTTGAAAA
70441247 T-TATTTT
1 TATATTTT
70441254 GAATTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (14 bp):
TATATTTTTGAAAA
Found at i:70442397 original size:14 final size:15
Alignment explanation
Indices: 70442366--70442399 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
70442356 TATAGAAGTT
70442366 AAATGGTTATTAAAG
1 AAATGGTTATTAAAG
*
70442381 AAATGGTT-TTAAGG
1 AAATGGTTATTAAAG
70442395 AAATG
1 AAATG
70442400 AACCATGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (15 bp):
AAATGGTTATTAAAG
Found at i:70442556 original size:24 final size:24
Alignment explanation
Indices: 70442502--70442556 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
70442492 AAATGTATTG
*
70442502 TAGAATTACTGTGAACTGCATTTA
1 TAGAAATACTGTGAACTGCATTTA
* * * *
70442526 CAAAAATATTGTGAACTGTATTTA
1 TAGAAATACTGTGAACTGCATTTA
70442550 TAGAAAT
1 TAGAAAT
70442557 GTCACAAAAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (24 bp):
TAGAAATACTGTGAACTGCATTTA
Found at i:70442694 original size:54 final size:54
Alignment explanation
Indices: 70442614--70442796 Score: 224
Period size: 54 Copynumber: 3.4 Consensus size: 54
70442604 AAGACTGTAG
* * * * **
70442614 AAGGTTGTGATCGT-AATCAGCAGACTGTGAGATTTGTAAAATCCTGTAAGTAA
1 AAGGTCGTGATCATAAATCAGCGGACTGCGAGATTCATAAAATCCTGTAAGTAA
* * *
70442667 AAGGTCGTGATCATAAATCAGTGGACTGCGAGATTCCTAAAATCCCGTAAGTAA
1 AAGGTCGTGATCATAAATCAGCGGACTGCGAGATTCATAAAATCCTGTAAGTAA
* * *
70442721 AAGGTCGTGATCATAAATCAGCGGACTACGAGATTCATAAAATCTTGTAAGTAG
1 AAGGTCGTGATCATAAATCAGCGGACTGCGAGATTCATAAAATCCTGTAAGTAA
* **
70442775 AAGGTTGTGATTGTAAATCAGC
1 AAGGTCGTGATCATAAATCAGC
70442797 AAACCGTAAG
Statistics
Matches: 112, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 12 0.11
54 100 0.89
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.27
Consensus pattern (54 bp):
AAGGTCGTGATCATAAATCAGCGGACTGCGAGATTCATAAAATCCTGTAAGTAA
Found at i:70443024 original size:117 final size:117
Alignment explanation
Indices: 70442774--70443263 Score: 391
Period size: 117 Copynumber: 4.2 Consensus size: 117
70442764 CTTGTAAGTA
* * * * * * **
70442774 GAAGGTTGTGATTGTAAATCAGCAAACCGTAAGAAAGTCGAAGGTCGTGATCATAAATCAGTAGA
1 GAAGGTCGTGATCGTAAATCAGCAAACCATAAGAAAGCCAAAGGTCGTGATCGTAAATCAACAGA
* * *
70442839 CTGTAAGAAAG-CTAAAGGTCGTGATCGTAAACCAGCAAACCATAAGAAAGCC
66 CTATAAGAAAGTC-AAAGGTCGTGATCGTAAATCAGCAAACTATAAGAAAGCC
* * * * * * *
70442891 GATGAAT-GTGACCGTAAATCAACAAACCATAAGAAAGCCAAAGTTTGTGATCGTAAATCAATAG
1 GAAG-GTCGTGATCGTAAATCAGCAAACCATAAGAAAGCCAAAGGTCGTGATCGTAAATCAACAG
* * * *
70442955 -GTCATAAGAAAGTCGAAGGTCGTGATCGTAAATCAGCAAACTTTAAGAAAGTC
65 ACT-ATAAGAAAGTCAAAGGTCGTGATCGTAAATCAGCAAACTATAAGAAAGCC
* * * * * * * * *
70443008 GAAGGTCATGATCGTAAATCAGCAGACCCTAA-ATAAGTCGAAGGTCATGATAGTAAATCAGCAA
1 GAAGGTCGTGATCGTAAATCAGCAAACCATAAGA-AAGCCAAAGGTCGTGATCGTAAATCAACAG
* * * * * * * *
70443072 ATTGTAAGAAAGTCAAAAGTCATGATTGTAAATCAGCAGACTGTAAGGAAGCC
65 ACTATAAGAAAGTCAAAGGTCGTGATCGTAAATCAGCAAACTATAAGAAAGCC
* ** * * * *
70443125 AAAGGTCGTGATCGTAAA-CTAGCGGACTATAAGAAAGCC-AATGACTGTGACCGTAAATCAACA
1 GAAGGTCGTGATCGTAAATC-AGCAAACCATAAGAAAGCCAAAGGTC-GTGATCGTAAATCAACA
* * * ***
70443188 GACTATAAGAAAGTCAAAGTTTGTGATCGTAAATCAAC-GGGTAATAAGAAAGCC
64 GACTATAAGAAAGTCAAAGGTCGTGATCGTAAATCAGCAAACT-ATAAGAAAGCC
*
70443242 GAAGGTCGTGGTCGTAAATCAG
1 GAAGGTCGTGATCGTAAATCAG
70443264 TAGACCACGA
Statistics
Matches: 290, Mismatches: 72, Indels: 22
0.76 0.19 0.06
Matches are distributed among these distances:
116 10 0.03
117 275 0.95
118 5 0.02
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (117 bp):
GAAGGTCGTGATCGTAAATCAGCAAACCATAAGAAAGCCAAAGGTCGTGATCGTAAATCAACAGA
CTATAAGAAAGTCAAAGGTCGTGATCGTAAATCAGCAAACTATAAGAAAGCC
Found at i:70443163 original size:39 final size:39
Alignment explanation
Indices: 70442774--70443268 Score: 345
Period size: 39 Copynumber: 12.7 Consensus size: 39
70442764 CTTGTAAGTA
* * * ** *
70442774 GAAGGTTGTGATTGTAAATCAGCAAACCGTAAGAAAGTC
1 GAAGGTCGTGATCGTAAATCAGCAGACTATAAGAAAGCC
* * * *
70442813 GAAGGTCGTGATCATAAATCAGTAGACTGTAAGAAAGCT
1 GAAGGTCGTGATCGTAAATCAGCAGACTATAAGAAAGCC
* * * *
70442852 AAAGGTCGTGATCGTAAACCAGCAAACCATAAGAAAGCC
1 GAAGGTCGTGATCGTAAATCAGCAGACTATAAGAAAGCC
* * * * * *
70442891 GATGAAT-GTGACCGTAAATCAACAAACCATAAGAAAGCC
1 GAAG-GTCGTGATCGTAAATCAGCAGACTATAAGAAAGCC
* * * ** * *
70442930 AAAGTTTGTGATCGTAAATCAATAG-GTCATAAGAAAGTC
1 GAAGGTCGTGATCGTAAATCAGCAGACT-ATAAGAAAGCC
* * *
70442969 GAAGGTCGTGATCGTAAATCAGCAAACTTTAAGAAAGTC
1 GAAGGTCGTGATCGTAAATCAGCAGACTATAAGAAAGCC
* ** *
70443008 GAAGGTCATGATCGTAAATCAGCAGACCCTAA-ATAAGTC
1 GAAGGTCGTGATCGTAAATCAGCAGACTATAAGA-AAGCC
* * * * * *
70443047 GAAGGTCATGATAGTAAATCAGCAAATTGTAAGAAAGTC
1 GAAGGTCGTGATCGTAAATCAGCAGACTATAAGAAAGCC
* * * * * *
70443086 AAAAGTCATGATTGTAAATCAGCAGACTGTAAGGAAGCC
1 GAAGGTCGTGATCGTAAATCAGCAGACTATAAGAAAGCC
* *
70443125 AAAGGTCGTGATCGTAAA-CTAGCGGACTATAAGAAAGCC
1 GAAGGTCGTGATCGTAAATC-AGCAGACTATAAGAAAGCC
* * * * *
70443164 -AATGACTGTGACCGTAAATCAACAGACTATAAGAAAGTC
1 GAAGGTC-GTGATCGTAAATCAGCAGACTATAAGAAAGCC
* * * * **
70443203 AAAGTTTGTGATCGTAAATCAAC-GGGTAATAAGAAAGCC
1 GAAGGTCGTGATCGTAAATCAGCAGACT-ATAAGAAAGCC
* *
70443242 GAAGGTCGTGGTCGTAAATCAGTAGAC
1 GAAGGTCGTGATCGTAAATCAGCAGAC
70443269 CACGAGATTC
Statistics
Matches: 361, Mismatches: 83, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
38 9 0.02
39 345 0.96
40 7 0.02
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (39 bp):
GAAGGTCGTGATCGTAAATCAGCAGACTATAAGAAAGCC
Found at i:70443325 original size:54 final size:54
Alignment explanation
Indices: 70443256--70443476 Score: 246
Period size: 54 Copynumber: 4.1 Consensus size: 54
70443246 GTCGTGGTCG
* *
70443256 TAAATCAGTAGACCACGAGATTCGTAGAATCTCGTAAGTAAAAGGTCATGATCA
1 TAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAAAAGGTCATGATCA
* * *
70443310 TAAATCAGTAGACCACGAGATTAGTAAAATCCCGTAAGTAAAAGGTCATGATCA
1 TAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAAAAGGTCATGATCA
* * * * * ** *
70443364 TGAATCAACAAACCGCGAGATTCGTAAAATCTTGTAAGTAAAAGGTTGTGATCG
1 TAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAAAAGGTCATGATCA
* * ** * * *
70443418 TAAATCAGCGGA-TAGCGAGATTCGTAAAATCTTATAAGTAGAAGGTCGTGATTA
1 TAAATCAGCAGACCA-CGAGATTCGTAAAATCTCGTAAGTAAAAGGTCATGATCA
70443472 TAAAT
1 TAAAT
70443477 TAGTGAACTG
Statistics
Matches: 141, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 141 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.25
Consensus pattern (54 bp):
TAAATCAGCAGACCACGAGATTCGTAAAATCTCGTAAGTAAAAGGTCATGATCA
Found at i:70443515 original size:39 final size:39
Alignment explanation
Indices: 70443453--70443533 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 39
70443443 AAAATCTTAT
* * * *
70443453 AAGTAGAAGGTCGTGATTATAAATTAGTGAA-CTGTAAGA
1 AAGTAGAAGGTCGTAACTATAAATCAATGAATC-GTAAGA
* *
70443492 AAGTCGAAGGTCGTAACTGTAAATCAATGAATCGTAAGA
1 AAGTAGAAGGTCGTAACTATAAATCAATGAATCGTAAGA
70443531 AAG
1 AAG
70443534 CCAAAAGTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
39 34 0.97
40 1 0.03
ACGTcount: A:0.42, C:0.09, G:0.25, T:0.25
Consensus pattern (39 bp):
AAGTAGAAGGTCGTAACTATAAATCAATGAATCGTAAGA
Found at i:70443592 original size:39 final size:39
Alignment explanation
Indices: 70443549--70443713 Score: 170
Period size: 39 Copynumber: 4.2 Consensus size: 39
70443539 AGTTATAGTT
*
70443549 GTAAATCAGCGAACCATAAGAAAGTCAAAAGTTGTGATC
1 GTAAATCAGCGAACCATAAGAAAGTCAAAGGTTGTGATC
* * ** *
70443588 GTAAATCAGTGGACCATAAGAAAGTCAAAGGTCATGATT
1 GTAAATCAGCGAACCATAAGAAAGTCAAAGGTTGTGATC
* * * *
70443627 TTAAATCAGTGTACCATAAGAAAGTCGAAGGTTGTGATC
1 GTAAATCAGCGAACCATAAGAAAGTCAAAGGTTGTGATC
* * ** *
70443666 GTAAATTAGC-AGACTATAAGAAAGTTGAAGGTCGTGATC
1 GTAAATCAGCGA-ACCATAAGAAAGTCAAAGGTTGTGATC
*
70443705 ATAAATCAG
1 GTAAATCAG
70443714 TGGACCGTAA
Statistics
Matches: 104, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.24
Consensus pattern (39 bp):
GTAAATCAGCGAACCATAAGAAAGTCAAAGGTTGTGATC
Found at i:70443592 original size:78 final size:78
Alignment explanation
Indices: 70443510--70443671 Score: 200
Period size: 78 Copynumber: 2.1 Consensus size: 78
70443500 GGTCGTAACT
* * *
70443510 GTAAATCAATGAATCGTAAGAAAGCCAAAAGTTAT-AGTTGTAAATCAGCGAACCATAAGAAAGT
1 GTAAATCAATGAACCATAAGAAAGCCAAAAGTCATGA-TTGTAAATCAGCGAACCATAAGAAAGT
70443574 CAAAAGTTGTGATC
65 CAAAAGTTGTGATC
* * * * * * *
70443588 GTAAATCAGTGGACCATAAGAAAGTCAAAGGTCATGATTTTAAATCAGTGTACCATAAGAAAGTC
1 GTAAATCAATGAACCATAAGAAAGCCAAAAGTCATGATTGTAAATCAGCGAACCATAAGAAAGTC
* *
70443653 GAAGGTTGTGATC
66 AAAAGTTGTGATC
70443666 GTAAAT
1 GTAAAT
70443672 TAGCAGACTA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 70 0.99
79 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (78 bp):
GTAAATCAATGAACCATAAGAAAGCCAAAAGTCATGATTGTAAATCAGCGAACCATAAGAAAGTC
AAAAGTTGTGATC
Found at i:70443840 original size:78 final size:78
Alignment explanation
Indices: 70443550--70443845 Score: 236
Period size: 78 Copynumber: 3.8 Consensus size: 78
70443540 GTTATAGTTG
* * * * * * ** *
70443550 TAAATCAGCGAACCATAAGAAAGTC-AAAAGTTGTGATCGTAAATCAGTGGACCATAAG-AAAGT
1 TAAATCAGTGGACCATAAAAAAGTCGAAGA-TTGTGATCATAAATTAGCAGACCATAAGAAAACT
* **
70443613 CAAAGGTCATGATTT
65 -GAAGGTCATGATCA
* * * * * **
70443628 TAAATCAGTGTACCATAAGAAAGTCGAAGGTTGTGATCGTAAATTAGCAGACTATAAGAAAGTTG
1 TAAATCAGTGGACCATAAAAAAGTCGAAGATTGTGATCATAAATTAGCAGACCATAAGAAAACTG
*
70443693 AAGGTCGTGATCA
66 AAGGTCATGATCA
* * *** * * *
70443706 TAAATCAGTGGACCGTAAAAAAATCGAAGCCCGTGATCATAAATAAGCGGAACATAAGAAAACTG
1 TAAATCAGTGGACCATAAAAAAGTCGAAGATTGTGATCATAAATTAGCAGACCATAAGAAAACTG
*
70443771 GAGGTCATGATCA
66 AAGGTCATGATCA
* * * * * * *
70443784 TAAATCAGCGGACCATAAAAAAGTCAAAAATTATTATCATAAATTAGCATACCATAAAAAAA
1 TAAATCAGTGGACCATAAAAAAGTCGAAGATTGTGATCATAAATTAGCAGACCATAAGAAAA
70443846 AAAAGTCGAA
Statistics
Matches: 171, Mismatches: 45, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
78 166 0.97
79 5 0.03
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.22
Consensus pattern (78 bp):
TAAATCAGTGGACCATAAAAAAGTCGAAGATTGTGATCATAAATTAGCAGACCATAAGAAAACTG
AAGGTCATGATCA
Found at i:70445739 original size:26 final size:25
Alignment explanation
Indices: 70445700--70445809 Score: 148
Period size: 26 Copynumber: 4.2 Consensus size: 25
70445690 TAATACAAAT
70445700 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
70445726 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
*
70445752 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
* *
70445778 TAATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTCCA
70445804 TGATAA
1 TGATAA
70445810 GAAATTCATG
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
25 4 0.05
26 70 0.92
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:70445757 original size:52 final size:52
Alignment explanation
Indices: 70445700--70445809 Score: 166
Period size: 52 Copynumber: 2.1 Consensus size: 52
70445690 TAATACAAAT
*
70445700 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
* * * * *
70445752 TGATAATGGGTTAGGTAAATGTTTCATAATAATGGTTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
70445804 TGATAA
1 TGATAA
70445810 GAAATTCATG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
Found at i:70452495 original size:99 final size:96
Alignment explanation
Indices: 70452324--70452499 Score: 248
Period size: 96 Copynumber: 1.8 Consensus size: 96
70452314 TAATGCCGAT
70452324 GCCATGTCCCAGACACGGTATTACACTAGCTCATCCATCAAGTCAATGCCATGTCCCAAACATGG
1 GCCATGTCCCAGACACGGTATTACACTAGCTCATCCATCAAGTCAATGCCATGTCCCAAACATGG
70452389 TCTTACACTGACTATTGAAATCAAGGCTAAC
66 TCTTACACTGACTATTGAAATCAAGGCTAAC
* * * * *
70452420 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-ATCCGTGCCGATGCCATGTCCCAAC
1 GCCATGTCCCAGACACGGTATTACACTAGCTCATC-CATCA--AGT--CAATGCCATGTCCCAAA
70452483 CATGGTCTTACACTGAC
61 CATGGTCTTACACTGAC
70452500 ACATCTCGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
95 3 0.04
96 33 0.47
97 2 0.03
99 32 0.46
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (96 bp):
GCCATGTCCCAGACACGGTATTACACTAGCTCATCCATCAAGTCAATGCCATGTCCCAAACATGG
TCTTACACTGACTATTGAAATCAAGGCTAAC
Found at i:70452550 original size:46 final size:50
Alignment explanation
Indices: 70452420--70452639 Score: 218
Period size: 46 Copynumber: 4.6 Consensus size: 50
70452410 CAAGGCTAAC
* *
70452420 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT--GCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-CGTAGGCCGAT
*
70452470 GCCATGTCCCA-ACCATGGTCTTACACT-G-AC-ACATCTCGTA-GCCGAT
1 GCCATGTCCCAGA-CATGGTCTTACACTGGCTCTACATCTCGTAGGCCGAT
* *
70452516 G-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCG-AGGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGGCCGAT
* * * *
70452562 G-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTC-AATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGGCCGAT
*
70452608 GCCATGTCCCAGACCTGGTCTTACACTGGCTC
1 GCCATGTCCCAGACATGGTCTTACACTGGCTC
70452640 ACAAATAACC
Statistics
Matches: 148, Mismatches: 11, Indels: 24
0.81 0.06 0.13
Matches are distributed among these distances:
44 10 0.07
45 17 0.11
46 65 0.44
47 14 0.09
48 15 0.10
49 2 0.01
50 25 0.17
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGGCCGAT
Found at i:70461212 original size:18 final size:18
Alignment explanation
Indices: 70461189--70461225 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
70461179 GTCGTTAACC
70461189 TATGATGTTTTTTGAAGT
1 TATGATGTTTTTTGAAGT
70461207 TATGATGTTTTTTGAAGT
1 TATGATGTTTTTTGAAGT
70461225 T
1 T
70461226 GTCATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.57
Consensus pattern (18 bp):
TATGATGTTTTTTGAAGT
Found at i:70461542 original size:22 final size:21
Alignment explanation
Indices: 70461505--70461563 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
70461495 TTAAATGAAT
* *
70461505 AAAAATTCTATTTTTTAACAA
1 AAAAAATCTATTTTTTAAAAA
70461526 AAAAAATCTATTATTTTAAAAA
1 AAAAAATCTATT-TTTTAAAAA
*
70461548 ATAAAAA-CTTTTTTTT
1 A-AAAAATCTATTTTTT
70461564 TAATATCAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 15 0.45
22 13 0.39
23 5 0.15
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAAAATCTATTTTTTAAAAA
Found at i:70461564 original size:22 final size:23
Alignment explanation
Indices: 70461502--70461566 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 23
70461492 CATTTAAATG
70461502 AATAAAAA-TTCTATTTTTTAACAA
1 AATAAAAACTT-T-TTTTTTAACAA
* * *
70461526 AA-AAAATCTATTATTTTAA-AA
1 AATAAAAACTTTTTTTTTAACAA
70461547 AATAAAAACTTTTTTTTTAA
1 AATAAAAACTTTTTTTTTAA
70461567 TATCAACTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 4 0.12
22 21 0.64
23 5 0.15
24 3 0.09
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (23 bp):
AATAAAAACTTTTTTTTTAACAA
Found at i:70461738 original size:24 final size:25
Alignment explanation
Indices: 70461692--70461738 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70461682 CTACGTGCTT
*
70461692 ATTTTTAATTATTTTTAAATAATGC
1 ATTTTTAATTATTTGTAAATAATGC
*
70461717 ATTTTTAATTA-TTGTAATTAAT
1 ATTTTTAATTATTTGTAAATAAT
70461739 TTTTTAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (25 bp):
ATTTTTAATTATTTGTAAATAATGC
Found at i:70462452 original size:29 final size:29
Alignment explanation
Indices: 70462410--70462467 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
70462400 AAAGAAAAAG
70462410 AAAGAAAAGTTTTATTTTATTTTATTTTA
1 AAAGAAAAGTTTTATTTTATTTTATTTTA
70462439 AAAGAAAAGTTTTATTTTATTTTATTTTA
1 AAAGAAAAGTTTTATTTTATTTTATTTTA
70462468 TTTTCAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (29 bp):
AAAGAAAAGTTTTATTTTATTTTATTTTA
Found at i:70472009 original size:43 final size:43
Alignment explanation
Indices: 70471959--70472197 Score: 354
Period size: 43 Copynumber: 5.6 Consensus size: 43
70471949 GACATTACGT
70471959 CTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAAGC
* *
70472002 CTACTAGGCACGAAGG-CTCGAATACACATCACCAGCACGAAGC
1 CTGCTAGGCACGAAGGCCT-GAATACACATCACCGGCACGAAGC
* * *
70472045 CTGCTAGGCACAAAGGCCCGAATACACATCATCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAAGC
* * * * * *
70472088 GTACTAGGCACAAAGGCCCGAATATACATCACCGGCACGAAAC
1 CTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAAGC
*
70472131 CTGCTAAGCACGAAGGCCTGAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAAGC
70472174 CTGCTAGGCACGAAGGCCTGAATA
1 CTGCTAGGCACGAAGGCCTGAATA
70472198 TAATACCAGC
Statistics
Matches: 174, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
42 2 0.01
43 171 0.98
44 1 0.01
ACGTcount: A:0.33, C:0.31, G:0.23, T:0.12
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAAGC
Found at i:70472260 original size:37 final size:38
Alignment explanation
Indices: 70472190--70472296 Score: 144
Period size: 37 Copynumber: 2.8 Consensus size: 38
70472180 GGCACGAAGG
* * *
70472190 CCTGAATATAATACCAGCACTAGGCCTGCGGGATTTATC
1 CCTG-ATATAATACCAGCACGAAGCCTGCGGGATTTAAC
70472229 CCTGATATAATACCA-CACGAAGCCTGCGGGATTTAAC
1 CCTGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
* **
70472266 CCGGATATTTTACCAGCACGAAGCCTGCGGG
1 CCTGATATAATACCAGCACGAAGCCTGCGGG
70472297 TCTTTAAGCC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
37 31 0.51
38 26 0.43
39 4 0.07
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (38 bp):
CCTGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
Found at i:70477122 original size:19 final size:21
Alignment explanation
Indices: 70477086--70477125 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
70477076 TGATCCATGT
70477086 AATTGAAATGTATGGTATATG
1 AATTGAAATGTATGGTATATG
70477107 AATT-AAATGT-TGGTATATG
1 AATTGAAATGTATGGTATATG
70477126 GCATGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 6 0.32
21 4 0.21
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (21 bp):
AATTGAAATGTATGGTATATG
Found at i:70478108 original size:89 final size:89
Alignment explanation
Indices: 70477992--70478163 Score: 292
Period size: 89 Copynumber: 1.9 Consensus size: 89
70477982 ATAACCCAGG
*
70477992 TTTGAACAATTAATGTTATTAGAAGTTTT-ATAACTCAAAATTTTTTGCATGATTTATCTTTTGA
1 TTTGAACAATTAATGTTATTAGAAGTTTTAAAAACTC-AAATTTTTTGCATGATTTATCTTTTGA
70478056 ATATTGAAATGAAATTGTACTCGGA
65 ATATTGAAATGAAATTGTACTCGGA
** *
70478081 TTTGAACAATTAATGTTATTAGAAGTTTTAAAAACTCATTTTTTTTGCATGATTTGTCTTTTGAA
1 TTTGAACAATTAATGTTATTAGAAGTTTTAAAAACTCAAATTTTTTGCATGATTTATCTTTTGAA
70478146 TATTGAAATGAAATTGTA
66 TATTGAAATGAAATTGTA
70478164 ATTGCTTCGG
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 72 0.92
90 6 0.08
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.45
Consensus pattern (89 bp):
TTTGAACAATTAATGTTATTAGAAGTTTTAAAAACTCAAATTTTTTGCATGATTTATCTTTTGAA
TATTGAAATGAAATTGTACTCGGA
Found at i:70478609 original size:2 final size:2
Alignment explanation
Indices: 70478602--70478633 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
70478592 TTCGTGCTTT
70478602 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
70478634 ATAGATTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:70483160 original size:30 final size:30
Alignment explanation
Indices: 70483125--70483185 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
70483115 TCCTTAACTC
70483125 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
70483155 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
70483185 A
1 A
70483186 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:70484388 original size:27 final size:28
Alignment explanation
Indices: 70484357--70484410 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 28
70484347 AAATAAGGAT
70484357 GTAATCTTATTTTAATTC-TATT-TTTTA
1 GTAAT-TTATTTTAATTCTTATTCTTTTA
* *
70484384 GTAATTTTTTTTATTTCTTATTCTTTT
1 GTAATTTATTTTAATTCTTATTCTTTT
70484411 TCATTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 10 0.43
27 9 0.39
28 4 0.17
ACGTcount: A:0.20, C:0.07, G:0.04, T:0.69
Consensus pattern (28 bp):
GTAATTTATTTTAATTCTTATTCTTTTA
Found at i:70485229 original size:82 final size:83
Alignment explanation
Indices: 70485128--70485297 Score: 191
Period size: 83 Copynumber: 2.1 Consensus size: 83
70485118 TAAACTGCGT
* * * * * * * * * *
70485128 AAAAAGTTCTTAAATTTTTTTAGAAAAATAATTACG-TTTTTTTTTTTACTCAATTGGGTACTTG
1 AAAAAGTTCTTAAACTTTTTCAAAAAAACAATTAAGCCTTTTTTTTTAACTCAACTGGATACTTA
* *
70485192 AACTTTCAAAATACATTA
66 AACTATCAAAATACATAA
*
70485210 AAAAAG-TCTTCAAACTTTTTCAAAAAAACAATTAAGCCTTTTTTTTTAACTTAACTGGATACTT
1 AAAAAGTTCTT-AAACTTTTTCAAAAAAACAATTAAGCCTTTTTTTTTAACTCAACTGGATACTT
*
70485274 AAACTATCAAAATGCATAA
65 AAACTATCAAAATACATAA
70485293 AAAAA
1 AAAAA
70485298 CTCATTGACC
Statistics
Matches: 72, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 4 0.06
82 26 0.36
83 42 0.58
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (83 bp):
AAAAAGTTCTTAAACTTTTTCAAAAAAACAATTAAGCCTTTTTTTTTAACTCAACTGGATACTTA
AACTATCAAAATACATAA
Found at i:70485338 original size:20 final size:20
Alignment explanation
Indices: 70485301--70485339 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70485291 AAAAAAACTC
**
70485301 ATTGACCGTTAACTTTAACA
1 ATTGACCGTTAAAGTTAACA
70485321 ATTGACCGTTAAAGTTAAC
1 ATTGACCGTTAAAGTTAAC
70485340 TGCTCTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (20 bp):
ATTGACCGTTAAAGTTAACA
Found at i:70485469 original size:12 final size:12
Alignment explanation
Indices: 70485442--70485476 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
70485432 TAAAATTTTT
*
70485442 AAATTTTAATAAA
1 AAATTATAA-AAA
70485455 AAATTATAAAAA
1 AAATTATAAAAA
70485467 AAATTATAAA
1 AAATTATAAA
70485477 TTTTTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATTATAAAAA
Found at i:70485794 original size:29 final size:26
Alignment explanation
Indices: 70485762--70485824 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 26
70485752 ACATTTTATA
70485762 AATTTTTAATGATTTTTATAAAATTTTAC
1 AATTTTTAAT-ATTTTTAT--AATTTTAC
* *
70485791 AATTTTTTTATATTTTTATAATTTTAT
1 AA-TTTTTAATATTTTTATAATTTTAC
70485818 AATTTTT
1 AATTTTT
70485825 TCCTAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 5 0.16
27 9 0.29
29 10 0.32
30 7 0.23
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (26 bp):
AATTTTTAATATTTTTATAATTTTAC
Found at i:70485795 original size:19 final size:19
Alignment explanation
Indices: 70485755--70485841 Score: 70
Period size: 19 Copynumber: 4.5 Consensus size: 19
70485745 CCTTAATACA
70485755 TTTTATAAATTTTTA-ATGAT
1 TTTTATAAATTTTTACA--AT
*
70485775 TTTTATAAAATTTTACAAT
1 TTTTATAAATTTTTACAAT
* * *
70485794 TTTTTTATATTTTTATAA-
1 TTTTATAAATTTTTACAAT
* *
70485812 TTTTATAATTTTTTCCTAAT
1 TTTTATAAATTTTTAC-AAT
70485832 TTTTAATAAA
1 TTTT-ATAAA
70485842 ATTTAAATAT
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
18 11 0.21
19 18 0.35
20 18 0.35
21 5 0.10
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (19 bp):
TTTTATAAATTTTTACAAT
Found at i:70485834 original size:27 final size:26
Alignment explanation
Indices: 70485783--70485838 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
70485773 ATTTTTATAA
* *
70485783 AATTTTACAATTTTTTTATATTTTTAT
1 AATTTTACAATTTTTTCATAATTTT-T
* *
70485810 AATTTTATAATTTTTTCCTAATTTTT
1 AATTTTACAATTTTTTCATAATTTTT
70485836 AAT
1 AAT
70485839 AAAATTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (26 bp):
AATTTTACAATTTTTTCATAATTTTT
Found at i:70485854 original size:29 final size:28
Alignment explanation
Indices: 70485773--70485854 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 28
70485763 ATTTTTAATG
*
70485773 ATTTTTATAAAATTTTACAATTTTTTTAT
1 ATTTTTATAAAA-TTTACAATTTTTCTAT
* *
70485802 ATTTTTAT-AATTTTATAATTTTTTCCTA-
1 ATTTTTATAAAATTTACAA-TTTTT-CTAT
70485830 ATTTTTAATAAAATTTA-AATATTTT
1 ATTTTT-ATAAAATTTACAAT-TTTT
70485855 ATTTTTATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
27 6 0.14
28 14 0.32
29 18 0.41
30 6 0.14
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
ATTTTTATAAAATTTACAATTTTTCTAT
Found at i:70485874 original size:24 final size:26
Alignment explanation
Indices: 70485830--70485879 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
70485820 TTTTTTCCTA
70485830 ATTTTTAATAAAATTTAAAT-ATTTT
1 ATTTTTAATAAAATTTAAATAATTTT
* *
70485855 ATTTTTATTAATATTT-AATAATTTT
1 ATTTTTAATAAAATTTAAATAATTTT
70485880 TACAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTTTAATAAAATTTAAATAATTTT
Found at i:70486341 original size:15 final size:15
Alignment explanation
Indices: 70486321--70486374 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
70486311 ATTCAAGTCA
70486321 AGTAAAATCGAATCG
1 AGTAAAATCGAATCG
*
70486336 AGTAAAATTC-AAGTCA
1 AGTAAAA-TCGAA-TCG
*
70486352 ATTAAAATCGAATCG
1 AGTAAAATCGAATCG
70486367 AGTAAAAT
1 AGTAAAAT
70486375 TAGAAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 20 0.62
16 12 0.38
ACGTcount: A:0.50, C:0.11, G:0.15, T:0.24
Consensus pattern (15 bp):
AGTAAAATCGAATCG
Found at i:70486347 original size:31 final size:31
Alignment explanation
Indices: 70486309--70486375 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
70486299 AAGTTAAATG
70486309 AAATTCAAGTCAAGTAAAATCGAATCGAGTA
1 AAATTCAAGTCAAGTAAAATCGAATCGAGTA
*
70486340 AAATTCAAGTCAATTAAAATCGAATCGAGTA
1 AAATTCAAGTCAAGTAAAATCGAATCGAGTA
70486371 AAATT
1 AAATT
70486376 AGAAAAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.49, C:0.12, G:0.13, T:0.25
Consensus pattern (31 bp):
AAATTCAAGTCAAGTAAAATCGAATCGAGTA
Found at i:70486526 original size:9 final size:9
Alignment explanation
Indices: 70486512--70486554 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
70486502 CCCAAATTAT
70486512 TTTTTTAGA
1 TTTTTTAGA
70486521 TTTTTTA-A
1 TTTTTTAGA
*
70486529 TTTTTTATA
1 TTTTTTAGA
70486538 TATTCTTTAGA
1 T-TT-TTTAGA
70486549 TTTTTT
1 TTTTTT
70486555 TAAAAAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
8 8 0.27
9 12 0.40
10 4 0.13
11 6 0.20
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (9 bp):
TTTTTTAGA
Found at i:70486546 original size:19 final size:19
Alignment explanation
Indices: 70486510--70486556 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
70486500 TCCCCAAATT
*
70486510 ATTTTTTTAGATTTTTTA-
1 ATTTTTTTAGATTCTTTAG
*
70486528 ATTTTTTATATATTCTTTAG
1 ATTTTTT-TAGATTCTTTAG
70486548 ATTTTTTTA
1 ATTTTTTTA
70486557 AAAAATTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
19 11 0.44
20 7 0.28
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.70
Consensus pattern (19 bp):
ATTTTTTTAGATTCTTTAG
Found at i:70498791 original size:10 final size:10
Alignment explanation
Indices: 70498776--70498805 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
70498766 TTTCTCCATT
70498776 TTTTTTTTTA
1 TTTTTTTTTA
70498786 TTTTTTTTTA
1 TTTTTTTTTA
70498796 TTTTTATTTT
1 TTTTT-TTTT
70498806 GTCGTTCACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:70498799 original size:16 final size:15
Alignment explanation
Indices: 70498774--70498805 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
70498764 TATTTCTCCA
70498774 TTTTTTTTTTTATTT
1 TTTTTTTTTTTATTT
70498789 TTTTTTATTTTTATTT
1 TTTTTT-TTTTTATTT
70498805 T
1 T
70498806 GTCGTTCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (15 bp):
TTTTTTTTTTTATTT
Found at i:70503416 original size:40 final size:40
Alignment explanation
Indices: 70503328--70503439 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 40
70503318 CAATTGAATG
* * * * * *
70503328 ATACTCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATT
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGACT
* *
70503368 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACT
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGACT
*
70503408 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGC
70503440 TTGTGGTTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGACT
Done.