Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 229 of 438
Found at i:70514460 original size:59 final size:59
Alignment explanation
Indices: 70514368--70514485 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
70514358 ATAGCTTAGT
70514368 AAGCTAATATGAAAGAAATAAGCTAGCCTTACCATACATTAACATGCAAATAATATAAC
1 AAGCTAATATGAAAGAAATAAGCTAGCCTTACCATACATTAACATGCAAATAATATAAC
70514427 AAGCTAATATGAAAGAAATAAGCTAGCCTTACCATACATTAACATGCAAATAATATAAC
1 AAGCTAATATGAAAGAAATAAGCTAGCCTTACCATACATTAACATGCAAATAATATAAC
70514486 TTAAGGTAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.24
Consensus pattern (59 bp):
AAGCTAATATGAAAGAAATAAGCTAGCCTTACCATACATTAACATGCAAATAATATAAC
Found at i:70523496 original size:46 final size:45
Alignment explanation
Indices: 70523445--70523672 Score: 143
Period size: 43 Copynumber: 5.2 Consensus size: 45
70523435 CGGTACGTGG
*
70523445 AGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTCAGTGA
1 AGATAAGATTCT-CAAAATTCGATCTGCTCCACTCCTGCTCAGTGA
** * *
70523491 AGATAAGA-TCT-AGTATT-TAGCCTGCTCCACT-CTGCTCAGTGA
1 AGATAAGATTCTCAAAATTCGA-TCTGCTCCACTCCTGCTCAGTGA
* * ** * * * *
70523533 AGATAAG--GCTTATGATTGGAATCTGCTCCA-TCGCCGGT-ACGTGG
1 AGATAAGATTCTCAAAATTCG-ATCTGCTCCACTC-CTGCTCA-GTGA
* *
70523577 AGATAAGATTCTCCAAAATTCGATCTGCTTCACTCTTGCTCAGTGA
1 AGATAAGATTCT-CAAAATTCGATCTGCTCCACTCCTGCTCAGTGA
*** * * *
70523623 AGATAAGA-TCTGGTATTTAG-CCTGCTCCACTCCTGCTCAGTGA
1 AGATAAGATTCTCAAAATTCGATCTGCTCCACTCCTGCTCAGTGA
70523666 AGATAAG
1 AGATAAG
70523673 GCTTATGATA
Statistics
Matches: 139, Mismatches: 31, Indels: 27
0.71 0.16 0.14
Matches are distributed among these distances:
41 2 0.01
42 24 0.17
43 49 0.35
44 18 0.13
45 6 0.04
46 32 0.23
47 8 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (45 bp):
AGATAAGATTCTCAAAATTCGATCTGCTCCACTCCTGCTCAGTGA
Found at i:70523522 original size:43 final size:42
Alignment explanation
Indices: 70523469--70523672 Score: 146
Period size: 43 Copynumber: 4.7 Consensus size: 42
70523459 AAAATTCGAT
*
70523469 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGC
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTA-TATTTAGC
* * **
70523512 CTGCTCCACT-CTGCTCAGTGAAGATAAG-GCTTATGATTGGAAT
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATC-TAT-ATT-TAGC
* * * * * * *
70523555 CTGCTCCA-TCGCCGGT-ACGTGGAGATAAGATTCTCCAAAATTCGAT
1 CTGCTCCACTC-CTGCTCA-GTGAAGATAAGA-TCT--ATATTTAG-C
* * *
70523601 CTGCTTCACTCTTGCTCAGTGAAGATAAGATCTGGTATTTAGC
1 CTGCTCCACTCCTGCTCAGTGAAGATAAGATCT-ATATTTAGC
70523644 CTGCTCCACTCCTGCTCAGTGAAGATAAG
1 CTGCTCCACTCCTGCTCAGTGAAGATAAG
70523673 GCTTATGATA
Statistics
Matches: 121, Mismatches: 27, Indels: 26
0.70 0.16 0.15
Matches are distributed among these distances:
41 2 0.02
42 24 0.20
43 46 0.38
44 17 0.14
45 4 0.03
46 24 0.20
47 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (42 bp):
CTGCTCCACTCCTGCTCAGTGAAGATAAGATCTATATTTAGC
Found at i:70523587 original size:132 final size:134
Alignment explanation
Indices: 70523103--70523681 Score: 794
Period size: 135 Copynumber: 4.3 Consensus size: 134
70523093 ATCTATAAAT
* * * * * * *
70523103 TTTAGCCTGTTACC-CTACTGCTTAGTAAAGATAAAGCTGATGATTGGAATCTGCTCCATCGCTG
1 TTTAGCCTGCT-CCACTCCTGCTCAGTGAAGATAAGGCTTATGATTGGAATCTGCTCCATCGCCG
* * *
70523167 GTACGTGGAGATAAGATTCTCCAAAATTTGATCTGCTTCACTCTTGCTCAATGAAGATAAGATCT
65 GTACGTGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT
70523232 GGTATA
130 GG-ATA
* * ** * *
70523238 TTTAGCCTGTTCCACTCCTGCTCAGTGAAGATAAGG-TTGGTGGCT-GAGATCTGCTTCATTGCC
1 TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTT-ATGATTGGA-ATCTGCTCCATCGCC
* * * * * * *
70523301 GATACATGGAGATAAGATTCACCAAAATTTGATCTGC-TCTGCTCCTGCTCAGCGAAGATAAGAC
64 GGTACGTGGAGATAAGATTCTCCAAAATTCGATCTGCTTC-ACTCCTGCTCAGTGAAGATAAGAT
70523365 CTGGTATA
128 CTGG-ATA
* * * *
70523373 TTTAGCCTGCTCCACTCCTGCTCAATGAATATAAAGCTAATGATTGGAATCTGCTCCATCGCCGG
1 TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTTATGATTGGAATCTGCTCCATCGCCGG
*
70523438 TACGTGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTA
66 TACGTGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTG
70523503 G-TA
131 GATA
70523506 TTTAGCCTGCTCCACT-CTGCTCAGTGAAGATAAGGCTTATGATTGGAATCTGCTCCATCGCCGG
1 TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTTATGATTGGAATCTGCTCCATCGCCGG
*
70523570 TACGTGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCTTGCTCAGTGAAGATAAGATCTG
66 TACGTGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTG
70523635 G-TA
131 GATA
70523638 TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTTATGAT
1 TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTTATGAT
70523682 ATCTGTAATC
Statistics
Matches: 393, Mismatches: 43, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
132 126 0.32
133 45 0.11
134 7 0.02
135 210 0.53
136 5 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (134 bp):
TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTTATGATTGGAATCTGCTCCATCGCCGG
TACGTGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTG
GATA
Found at i:70537399 original size:23 final size:24
Alignment explanation
Indices: 70537373--70537425 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 24
70537363 AAAAGATAGT
70537373 AAAATAGAGA-AATAAAAACAACA
1 AAAATAGAGATAATAAAAACAACA
* * * *
70537396 AAAA-AAATATCATCAAAACAACA
1 AAAATAGAGATAATAAAAACAACA
70537419 AAAATAG
1 AAAATAG
70537426 TAAAAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
22 3 0.13
23 19 0.83
24 1 0.04
ACGTcount: A:0.72, C:0.11, G:0.06, T:0.11
Consensus pattern (24 bp):
AAAATAGAGATAATAAAAACAACA
Found at i:70545699 original size:69 final size:69
Alignment explanation
Indices: 70545588--70545726 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
70545578 GATAGGAAAA
*
70545588 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
70545653 GCTG
66 GCTG
70545657 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
70545722 GCTG
66 GCTG
70545726 A
1 A
70545727 TAGAGTCTTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (69 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Found at i:70554129 original size:117 final size:117
Alignment explanation
Indices: 70553919--70554152 Score: 452
Period size: 117 Copynumber: 2.0 Consensus size: 117
70553909 CAAACCACTT
70553919 TCCATGTAAGAAAATTTTCCATTTTTTGAGCTCTAAACAAACTATTCACTGCGGGAAATAATCCA
1 TCCATGTAAGAAAATTTTCCATTTTTTGAGCTCTAAACAAACTATTCACTGCGGGAAATAATCCA
70553984 TACTACCATATTGAAAAAAAGAGAAAGACAATAATAGAATAAAAGTATGTTG
66 TACTACCATATTGAAAAAAAGAGAAAGACAATAATAGAATAAAAGTATGTTG
70554036 TCCATGTAAGAAAATTTTCCATTTTTTGAGCTCTAAACAAACTATTCACTGCGGGAAATAATCCA
1 TCCATGTAAGAAAATTTTCCATTTTTTGAGCTCTAAACAAACTATTCACTGCGGGAAATAATCCA
70554101 TACTACCCATATTGAAAAAAAGAG-AAGACAATAATAGAATAAAAGTATGTTG
66 TACTA-CCATATTGAAAAAAAGAGAAAGACAATAATAGAATAAAAGTATGTTG
70554153 CAGATTGAAA
Statistics
Matches: 116, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
117 98 0.84
118 18 0.16
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (117 bp):
TCCATGTAAGAAAATTTTCCATTTTTTGAGCTCTAAACAAACTATTCACTGCGGGAAATAATCCA
TACTACCATATTGAAAAAAAGAGAAAGACAATAATAGAATAAAAGTATGTTG
Found at i:70557969 original size:23 final size:23
Alignment explanation
Indices: 70557942--70558043 Score: 127
Period size: 23 Copynumber: 4.4 Consensus size: 23
70557932 ACATTATTCG
70557942 TGAATATGTTCGATTAAGTTAAA
1 TGAATATGTTCGATTAAGTTAAA
**
70557965 TGAATATGTTC-ATTTAATGTT-CG
1 TGAATATGTTCGA-TTAA-GTTAAA
*
70557988 TGAATATGTTGGATTAAGTTAAA
1 TGAATATGTTCGATTAAGTTAAA
* *
70558011 TGAACATGTTCGATTAAATTAAA
1 TGAATATGTTCGATTAAGTTAAA
70558034 TGAATATGTT
1 TGAATATGTT
70558044 TGTTAACATT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
22 4 0.06
23 58 0.88
24 4 0.06
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (23 bp):
TGAATATGTTCGATTAAGTTAAA
Found at i:70558054 original size:23 final size:23
Alignment explanation
Indices: 70557942--70558056 Score: 117
Period size: 23 Copynumber: 5.0 Consensus size: 23
70557932 ACATTATTCG
*
70557942 TGAATATGTTCGATTAAGTTAAA
1 TGAATATGTTCGATTAAATTAAA
* ***
70557965 TGAATATGTTC-ATTTAATGTTCG
1 TGAATATGTTCGATTAAAT-TAAA
* *
70557988 TGAATATGTTGGATTAAGTTAAA
1 TGAATATGTTCGATTAAATTAAA
*
70558011 TGAACATGTTCGATTAAATTAAA
1 TGAATATGTTCGATTAAATTAAA
*
70558034 TGAATATGTTTG-TTAACATTAAA
1 TGAATATGTTCGATTAA-ATTAAA
70558057 CAAACGAACA
Statistics
Matches: 73, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
22 9 0.12
23 59 0.81
24 5 0.07
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (23 bp):
TGAATATGTTCGATTAAATTAAA
Found at i:70559605 original size:31 final size:31
Alignment explanation
Indices: 70559563--70559621 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
70559553 ATTTGGTAAC
70559563 TAAAATATTCAAAAGTTTTCATTTAAGTTAT
1 TAAAATATTCAAAAGTTTTCATTTAAGTTAT
* *
70559594 TAAATTATTCAAAAGTTTTTATTTAAGT
1 TAAAATATTCAAAAGTTTTCATTTAAGT
70559622 CACTAGGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (31 bp):
TAAAATATTCAAAAGTTTTCATTTAAGTTAT
Found at i:70559633 original size:31 final size:31
Alignment explanation
Indices: 70559561--70559626 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
70559551 CAATTTGGTA
* *
70559561 ACTAAAATATTCAAAAGTTTTCATTTAAGTT
1 ACTAAATTATTCAAAAGTTTTCATTTAAGTC
* *
70559592 ATTAAATTATTCAAAAGTTTTTATTTAAGTC
1 ACTAAATTATTCAAAAGTTTTCATTTAAGTC
70559623 ACTA
1 ACTA
70559627 GGTTATTAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (31 bp):
ACTAAATTATTCAAAAGTTTTCATTTAAGTC
Found at i:70566825 original size:50 final size:50
Alignment explanation
Indices: 70566714--70566986 Score: 186
Period size: 49 Copynumber: 5.7 Consensus size: 50
70566704 CAGTAACTGC
* * * *
70566714 CGATGCCATGTCCCCGACATGGTCTTACACTGGCTAT--CATCAT-CGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCAT-ATCCG-TGT
*
70566763 CGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGCATATCCGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCGTGT
* * * * * * *
70566813 TGATGCCATGTCCCAGACGTAGTCTTACACTAACACATCGC-T-T---AGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCGCATATCCGTGT
* * ** *
70566859 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCG--TCTCTATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCGTGT
* * *
70566905 CGATGCCATGTCCCAGACATGGTCTTATACTGGCTCT--CATAAT--GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCAT-ATCCGT-GT
*
70566953 CGATG-CATGTCCCAGACAT-GTCTTACAGTAGCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
70566987 ACACAAGTAC
Statistics
Matches: 185, Mismatches: 25, Indels: 31
0.77 0.10 0.13
Matches are distributed among these distances:
42 1 0.01
43 4 0.02
44 14 0.08
45 13 0.07
46 24 0.13
47 29 0.16
48 21 0.11
49 35 0.19
50 35 0.19
51 9 0.05
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCGTGT
Found at i:70566961 original size:94 final size:95
Alignment explanation
Indices: 70566711--70566984 Score: 277
Period size: 94 Copynumber: 2.9 Consensus size: 95
70566701 ATGCAGTAAC
* * * * *
70566711 TGCCGATGCCATGTCCCCGACATGGTCTTACACTGGCTATCATCATCGAGGTCGATGCCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG-CATGTCC
* * *
70566776 CAGACATGGTCTTATACTAGCTCTCGCATATCCG
64 CAGACAT-GTCTTACACTAGCACTCG-ATATCCA
** * * ** * ** *
70566810 TGTTGATGCCATGTCCCAGACGTAGTCTTACACT--AACACATCGCT-TAGCCGATGCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATGTGGCCGATGCATGTCCC
* *
70566872 AGACATGTCTTACACTAGCACTCG-TCTCTA
65 AGACATGTCTTACACTAGCACTCGATATCCA
*
70566902 TGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
*
70566967 GACATGTCTTACAGTAGC
66 GACATGTCTTACACTAGC
70566985 TCACACAAGT
Statistics
Matches: 140, Mismatches: 31, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
92 32 0.23
93 1 0.01
94 54 0.39
95 14 0.10
96 6 0.04
97 3 0.02
98 1 0.01
99 29 0.21
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (95 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCACTCGATATCCA
Found at i:70566991 original size:142 final size:143
Alignment explanation
Indices: 70566712--70566979 Score: 345
Period size: 142 Copynumber: 1.9 Consensus size: 143
70566702 TGCAGTAACT
* * *
70566712 GCCGATGCCATGTCCCCGACATGGTCTTACACTGGCTATCATCATCGAGGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCC
** *
70566777 AGACATGGTCTTATACTAGCTCTCGCATATCCGTGTTGATGCCATGTCCCAGACGTAGTCTTACA
66 AGACATGGTCTTATACTAGCTCTC-CATAT-CGTGCCGATGCCATGTCCCAGACATAGTCTTACA
70566842 CTAACACATCGCTTA
129 CTAACACATCGCTTA
* * *
70566857 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTCGTC-TCTATGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGAGGCCGATGCCATGTCC
*
70566918 CAGACATGGTCTTATACTGGCTCT-CATAAT-GTGGCCGATG-CATGTCCCAGACAT-GTCTTAC
65 CAGACATGGTCTTATACTAGCTCTCCAT-ATCGT-GCCGATGCCATGTCCCAGACATAGTCTTAC
70566979 A
128 A
70566980 GTAGCTCACA
Statistics
Matches: 110, Mismatches: 10, Indels: 13
0.83 0.08 0.10
Matches are distributed among these distances:
138 8 0.07
139 15 0.14
140 8 0.07
141 2 0.02
142 41 0.37
143 16 0.15
144 13 0.12
145 7 0.06
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (143 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCC
AGACATGGTCTTATACTAGCTCTCCATATCGTGCCGATGCCATGTCCCAGACATAGTCTTACACT
AACACATCGCTTA
Found at i:70579301 original size:50 final size:50
Alignment explanation
Indices: 70579181--70579364 Score: 223
Period size: 50 Copynumber: 3.7 Consensus size: 50
70579171 TCTCATATCG
* * *
70579181 ATGCCATGTCCCAGACATGGTCTTACACGAAAT--CATATATCCATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATATCGATGCCA
* * * *
70579229 ATG-CATATCCCAGATA-GAGTCTTACATGGGATCACATCTATCGATGCCA
1 ATGCCATGTCCCAGACATG-GTCTTACATGGAATCACATATATCGATGCCA
* * *
70579278 ATGCCATGTCCCAGACGTGGTCTTACATCGAATCACATATATCGATGGCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATATCGATGCCA
* *
70579328 ATGCCATGTCCCAGACATAGTCTTACATGGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGAATCACA
70579365 CTTAACCCTA
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
46 1 0.01
47 22 0.19
48 3 0.03
49 16 0.14
50 70 0.62
51 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATATCGATGCCA
Found at i:70588024 original size:28 final size:29
Alignment explanation
Indices: 70587955--70588026 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
70587945 GACAAGATTG
* *
70587955 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-AAATTATACA
* *
70587985 GCACTAAGTGTGCGAGTTT-GATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACA
70588013 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70588027 GATTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 20 0.53
30 18 0.47
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTATACA
Found at i:70595886 original size:30 final size:30
Alignment explanation
Indices: 70595850--70595950 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
70595840 GACAAGATTG
* * *
70595850 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
70595880 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
70595908 GCACTAAGTGTGCGAGTTGAATA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
70595937 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70595951 GATTCACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
28 24 0.38
29 20 0.32
30 19 0.30
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.31
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:70595962 original size:29 final size:28
Alignment explanation
Indices: 70595879--70595954 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 28
70595869 AAAATTGTAC
*
70595879 AGCACTAAGTGTGCGAGTTTGAT-TATAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
70595907 AGCACTAAGTGTGC-GAGTTGAATATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
70595936 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
70595955 CACTATATGC
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
26 1 0.02
27 3 0.07
28 16 0.37
29 21 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:70603865 original size:28 final size:29
Alignment explanation
Indices: 70603796--70603867 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
70603786 GACAAGATTG
* *
70603796 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-AAATTATACA
* *
70603826 GCACTAAGTGTGCGAGTTT-GATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACA
70603854 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70603868 GATTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 20 0.53
30 18 0.47
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTATACA
Found at i:70605417 original size:46 final size:48
Alignment explanation
Indices: 70605259--70605477 Score: 245
Period size: 46 Copynumber: 4.7 Consensus size: 48
70605249 GCAAGTTGCC
*
70605259 GATGCCATGTCCCAGACATGGTCTTACACTGACTAACATCACCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTTACATC-CCGAGGCT
* ** *
70605308 GATGCCATGTCCCAGACATGGTCTTACACCGAC--ACATTTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCCCG-AGGCT
* * * *
70605354 GATG-CATGTCCCAGACAT-GTCTTATACTGGCTTACGTCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCCCGAGGCT
* * * *
70605400 GATG-TATGTCCCAGACAT-GTCTTATACTGGCTTATATCCCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCCCGAGGCT
*
70605446 GATGCTATGTCCCAGACATGGTCTTACACTGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGA
70605478 ATCTCAAATA
Statistics
Matches: 148, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 62 0.42
47 19 0.13
48 10 0.07
49 32 0.22
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCCCGAGGCT
Found at i:70605901 original size:30 final size:30
Alignment explanation
Indices: 70605861--70605917 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
70605851 AATTCACACC
*
70605861 TTTGGTAAAATGACCATTTTGCCCCTAGAT
1 TTTGGCAAAATGACCATTTTGCCCCTAGAT
70605891 TTTGGCAAAATGACCATTTTGCCCCTA
1 TTTGGCAAAATGACCATTTTGCCCCTA
70605918 TGCTCGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTGCCCCTAGAT
Found at i:70609995 original size:40 final size:40
Alignment explanation
Indices: 70609940--70610081 Score: 227
Period size: 40 Copynumber: 3.6 Consensus size: 40
70609930 TATTCGGATG
70609940 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
70609980 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
70610020 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
*
70610060 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
70610082 TACTTGGGTT
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
39 15 0.15
40 80 0.82
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70615297 original size:13 final size:13
Alignment explanation
Indices: 70615279--70615305 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70615269 CACAGCCGGA
70615279 CAATGGCCCGTGT
1 CAATGGCCCGTGT
70615292 CAATGGCCCGTGT
1 CAATGGCCCGTGT
70615305 C
1 C
70615306 CCTCACATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.30, T:0.22
Consensus pattern (13 bp):
CAATGGCCCGTGT
Found at i:70621811 original size:79 final size:82
Alignment explanation
Indices: 70621671--70621855 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
70621661 TCGAATGATG
* * *
70621671 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
70621735 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
70621751 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
70621813 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
70621831 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70621856 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:70621863 original size:40 final size:40
Alignment explanation
Indices: 70621672--70621863 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
70621662 CGAATGATGT
* * * * *
70621672 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
70621712 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
70621752 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
70621791 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
70621831 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
70621864 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:70629823 original size:79 final size:82
Alignment explanation
Indices: 70629683--70629867 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
70629673 TCGAATGATG
* * *
70629683 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
70629747 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
70629763 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
70629825 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
70629843 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70629868 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:70629875 original size:40 final size:40
Alignment explanation
Indices: 70629684--70629875 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
70629674 CGAATGATGT
* * * * *
70629684 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
70629724 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
70629764 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
70629803 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
70629843 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
70629876 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:70629898 original size:79 final size:79
Alignment explanation
Indices: 70629683--70629900 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
70629673 TCGAATGATG
* * * * ** *
70629683 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
70629746 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
70629763 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
70629828 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
70629843 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
70629901 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:70634027 original size:14 final size:14
Alignment explanation
Indices: 70634008--70634037 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70633998 CGTCAATAAC
70634008 TCTATACATTTCAA
1 TCTATACATTTCAA
70634022 TCTATACATTTCAA
1 TCTATACATTTCAA
70634036 TC
1 TC
70634038 GCTAATCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (14 bp):
TCTATACATTTCAA
Found at i:70639087 original size:29 final size:29
Alignment explanation
Indices: 70639054--70639155 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
70639044 GTGACGAGAT
*
70639054 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
70639083 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70639112 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70639141 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
70639156 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:70639171 original size:29 final size:29
Alignment explanation
Indices: 70639054--70639215 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
70639044 GTGACGAGAT
* **
70639054 TGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
70639083 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
70639112 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
70639141 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
70639170 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
70639199 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
70639216 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.02
29 111 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:70639184 original size:58 final size:59
Alignment explanation
Indices: 70639050--70639176 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
70639040 TACGGTGACG
* * *
70639050 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
70639107 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
70639165 GGGTATGGCACT
1 AGATATGGCACT
70639177 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:70647099 original size:29 final size:29
Alignment explanation
Indices: 70647031--70647130 Score: 177
Period size: 29 Copynumber: 3.5 Consensus size: 29
70647021 GTGACGAGAT
70647031 TGGCACTAAGTGTGCATGCTGGAAA-A-A
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
70647058 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70647087 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70647116 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
70647131 GAGCTCGAAG
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
27 24 0.35
28 1 0.01
29 44 0.64
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:70647146 original size:29 final size:29
Alignment explanation
Indices: 70647031--70647190 Score: 98
Period size: 29 Copynumber: 5.6 Consensus size: 29
70647021 GTGACGAGAT
* *
70647031 TGGCACTAAGTGTGC-ATGCTGGAAA--AA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
70647058 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
70647087 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
70647116 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
70647145 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
70647174 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
70647191 AATCGAGTAT
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 24 0.21
28 2 0.02
29 85 0.76
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:70647156 original size:56 final size:55
Alignment explanation
Indices: 70647027--70647156 Score: 149
Period size: 56 Copynumber: 2.3 Consensus size: 55
70647017 TACGGTGACG
* *
70647027 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATGGCACTGAGTGTGCATGCTGGAA
1 AGATATGGCACT-AGTGTGCATGCTGGAAAAATGGCACTAAGTGTGCATGCTCGAA
*
70647082 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACT-AGTGTGCATGCTGGAAA-A-ATGGCACTAAGTGTGC-ATGCTCGAA
* *
70647140 GGGTATGGCACT-GTGTG
1 AGATATGGCACTAGTGTG
70647157 TGCGGGCTTA
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
55 3 0.05
56 30 0.46
57 1 0.02
58 30 0.46
59 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (55 bp):
AGATATGGCACTAGTGTGCATGCTGGAAAAATGGCACTAAGTGTGCATGCTCGAA
Found at i:70647159 original size:58 final size:58
Alignment explanation
Indices: 70647027--70647151 Score: 168
Period size: 58 Copynumber: 2.2 Consensus size: 58
70647017 TACGGTGACG
* *
70647027 AGAT-TGGCACTAAGTGTGCATGCTGGAAA-AATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATAATGGCACTAAGTGTGCGATGCTCGAA
*
70647082 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATA-ATGGCACTAAGTGTGCGATGCTCGAA
* *
70647140 GGGTATGGCACT
1 AGATATGGCACT
70647152 GTGTGTGCGG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
55 3 0.05
56 25 0.42
57 1 0.02
58 30 0.50
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATAATGGCACTAAGTGTGCGATGCTCGAA
Found at i:70652745 original size:27 final size:26
Alignment explanation
Indices: 70652672--70652775 Score: 84
Period size: 27 Copynumber: 3.8 Consensus size: 26
70652662 AACACGTCAA
*
70652672 GAAAGAAAAGCCTTTGTAGTGAAATAT
1 GAAAG-AAAGCCTTTGTGGTGAAATAT
* ** *
70652699 GAACGAAGAGCCTTCATGGTGCAATAT
1 GAAAGAA-AGCCTTTGTGGTGAAATAT
*
70652726 GAAAGAAATGCCTTTGTGGTGAATTAT
1 GAAAGAAA-GCCTTTGTGGTGAAATAT
* *
70652753 GGAAGGATAG-CTTCTGTGGTGAA
1 -GAAAGAAAGCCTT-TGTGGTGAA
70652776 CCCTACGGTG
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
26 6 0.10
27 49 0.80
28 6 0.10
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.27
Consensus pattern (26 bp):
GAAAGAAAGCCTTTGTGGTGAAATAT
Found at i:70659747 original size:880 final size:881
Alignment explanation
Indices: 70653448--70660205 Score: 8095
Period size: 877 Copynumber: 7.7 Consensus size: 881
70653438 AAAGAAGTAT
* * * * *
70653448 AAGGCGGTATCCACAAGTATACTGGTCGAGTTGTCATATAGTTTTACAATGATTTAGGTGAGTAC
1 AAGGCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
* * * * *
70653513 TCTGAGGATCGTACCCAA-AGAGGCGAGTGCTAGATAAATTCTAACCTAAAAACTAAAAGATCTA
66 TCCGAGGATCGTACCCAAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCTA
* * * * * *
70653577 ATTAGTACTTTAAATTAGTTATAATATGAAATCATAAAATAAAGGATTTTTAAGGTTGTAATAAT
131 ATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAAT
* * * * * *
70653642 AATAAAAGAAATTATTAAAAAGTAATAAACATCAAGAGATAGAAAAGGAGAATCAATAAAATCTT
196 AATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAAAAGGAGAATGAATCAAATCTT
* * * * * * * * * *
70653707 GAATATGGTTGATTAGCTTGCTTCGATAATCCCCATTAACTGTCGTTTGAAGTTTCTCGTTAATC
261 GATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAATC
* * ** * * * * *
70653772 AACTAGTTGCTACCTTAGTAGGACCTTTAGATCTTCCACTAACATAATGAGTCAACAAGAATTGC
326 AACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCACTAACATAACGAGTCAGCAAGGACTAC
* * * * * * * *
70653837 TTATCTTTCGACCTCACATTCCAGACTGGCTTAGGATGAAGGTGTTCACAAATAGGTCATACCAA
391 TTATCTTCCGACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATACCAA
* * *
70653902 ATTTGGGTTAATTCCCACCTTGATGACTTCCTGGGGTTGTCAGGCCTAGGTTTTGTTTCATATTC
456 ATTTGGGTTAATTCCCACCTTGATGACTTCCTAGGGTTGTCAAGCCTAGGTTTTGTTTCATGTTC
* * * *
70653967 ATCCTTTCCTAAACAGTTGATCCGTTGAGTAACCCTACAAAACAATCAATAGATCATGCCTCCAC
521 GTCCTTTCCCAAACAGCTGATCCGTTGAGTAACCCTACAAAACAATCAATAGATCATACCTCCAC
*
70654032 TCGCTAA-CCCCCTAAAGAGGGATTAGTTCCTCATGGAAGAATGAGGAATGAAGAAATAAAA-TC
586 TTGCTAATCCCCC-AAAGAGGGATTAGTTCCTCATGGAAGAATGAGGAATGAAG-AATAAAATTC
* ** * **
70654095 TAGGAAAAGTATT-TGCTGGAAACAACTTGGAAGACCATATTATTAAAGAAGTTCTAATAATCCA
649 TGGGAAAAGTATTCT-CCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCC-
** * * ** * * *
70654159 TT-AGTAACAATGTGCAAGCATTCCGTAGGGAAAAAATGATGTTTTTATCACTAAGTTCTGATGA
712 TTCAGTAACAATGTGCAAGCATTGTGCA-GGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGA
* * *
70654223 GCTTACATGAATTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCACCTCCGGACGTACT
776 GCTTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCGCCTCCGTACGTACT
* **
70654288 AATGTTCTTAGTGTGAATACTATAATAAAATATAGAAATAC
841 AATGTCCAGAGTGTGAATACTATAATAAAATATAGAAATAC
* * ** * * *
70654329 GAGGCAATATTTGCAAGTA-ATAGGTCAAGTTGTAATATAGTTTTTCAATGATATAGGTGAGTAC
1 AAGGCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
* *** *
70654393 TCCGAGTATCGTACCCAACAAAAGGCGAGTGCCAAATCAATTCTAACCTAAACACTAAAAGATCT
66 TCCGAGGATCGTACCCAA-GGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCT
* *
70654458 TATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTCTAGGGTTTTTATAA
130 AATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAA
* * * * * *
70654523 TAATAAAATAAAAAATTTAAAAGAAATAAACTTCAAGAGATAAAAAAAGAGAATGAATCAAATCT
195 TAATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAAAAGGAGAATGAATCAAATCT
* * * * ** *
70654588 TGATTATTGGTGATTAGCTCGCTTTGGTAATCCCCATCAAGTATCGTTTAATCTTCCTCGTCAAG
260 TGATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAAT
* * * * * *
70654653 CAACTAGTTACTACCATAGTAGGATCTTCCAAACTTCCACTAACATAATGAGTCAGCAAAGACTA
325 CAACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCACTAACATAACGAGTCAGCAAGGACTA
* ** * * ** *
70654718 TTTATCTTCTAACCTCACT-GTCCAGAATGGCGTGGGGTGAAGGTGTTCATGGATAGGCCATACC
390 CTTATCTTCCGACCTCA-TAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATACC
* *
70654782 AAATTTGGGTTAATTCCCACCTTGATGACTTCCTAGAGTTGTCAAACCTAGGTTTTGTTTCATG-
454 AAATTTGGGTTAATTCCCACCTTGATGACTTCCTAGGGTTGTCAAGCCTAGGTTTTGTTTCATGT
* *
70654846 -C-T--TTTCCCAAACAGCTGATCCATTGAGTAACCCTACAAAACAATCAATAGATCATACCTTC
519 TCGTCCTTTCCCAAACAGCTGATCCGTTGAGTAACCCTACAAAACAATCAATAGATCATACCTCC
* * * * * *
70654907 ACTCGCTAATCCCCTAAAAAGGGATTAATTCCTCATGGAAGAATGAGGAATGAAAAATAAAATTT
584 ACTTGCTAATCCCCCAAAGAGGGATTAGTTCCTCATGGAAGAATGAGGAATGAAGAATAAAATTC
* * * * * *
70654972 TGGGAAAAGTATTCAT-TAGAAATAAGTTGGAAGAACATATTATTAAAGAAGTTCAAATGATTCT
649 TGGGAAAAGTATTC-TCCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCCT
* * * * *
70655036 TTAGTAACAATGTGCAAGAATTGTGAAGGTAAGAGGGATGCTTTTCTCAATAAGTTCTGATTAGC
713 TCAGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGAGC
* * * *** * *
70655101 TTACATGAGTTTATATTTTTGTTTCAAGTTGATTGTGAATATGTGACAATCTCTGTACATACTAA
778 TTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCGCCTCCGTACGTACTAA
* * * * *
70655166 CGTCTAAAGTGTGAATACTATAATCAAAGATAGAAATAC
843 TGTCCAGAGTGTGAATACTATAATAAAATATAGAAATAC
* * * *
70655205 AAGGCGATATCCGTAAGTATACAAGTCGAGTTGTAATATAGTTTTACAATGATGTAGGTGAATAC
1 AAGGCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
* * * * *
70655270 TCCAAGGATTGTACCCAAGGGAGGCGGGTGCCAAATCAATTCTAACCTAAACACTAAAAGTTCTA
66 TCCGAGGATCGTACCCAAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCTA
* *
70655335 ATTAATACTTTAAATTGGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAAT
131 ATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAAT
* * * * * *
70655400 AGTAAAATAAAATATTAAAAGGGGATAAACTTCAAGAGATAAAAGAAAGAGAATGAATCAAATCT
196 AATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAA-AAGGAGAATGAATCAAATCT
* * *
70655465 TGATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATTGTTTCAAGTTCCTTGTCAAT
260 TGATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAAT
* * * *
70655530 CAACTAGTTGCTACCCTAGTAGTATCTTTCTATCTTCCACTAACATAACGAGTCAGCATGGACTA
325 CAACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCACTAACATAACGAGTCAGCAAGGACTA
* *
70655595 CTTATCTTCCGACCTCATAGTCCAGACTAGCTTGGGGTGAAGGTGTTCATAGATGGGCCATACCA
390 CTTATCTTCCGACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATACCA
** * *
70655660 AATTTGGGTTAATTAGCACCTTGATGACTTCCTAGGGTTGTCAAGCCTAGGTTTTTTTTAATGTT
455 AATTTGGGTTAATTCCCACCTTGATGACTTCCTAGGGTTGTCAAGCCTAGGTTTTGTTTCATGTT
* * * ** ** * *
70655725 CATCCTTTCCTAAACAGTTGATCTATTGAGTAACCCTATGAAACAGTCAATAGATCAGACCTCCA
520 CGTCCTTTCCCAAACAGCTGATCCGTTGAGTAACCCTACAAAACAATCAATAGATCATACCTCCA
* ** *** * * * *
70655790 ATTATTAATCTTTCAAATAGGGATTAATTCCTTAT-GAAGAATGAGGAATGAAGAATAAAATGCT
585 CTTGCTAATCCCCCAAAGAGGGATTAGTTCCTCATGGAAGAATGAGGAATGAAGAATAAAATTCT
* * * * * * * * *
70655854 GGGAAAAGTATTCGCTAGAAAAAAGTTGGGAGACAAGATTATTAAAAAAGTTCTAATGATCCTTT
650 GGGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCCTTC
* ** * * * * *
70655919 AGTAACAATGTGCAACCATTGTGCAGGTAAAAATGATGTTTTTATCACTAAGTTTTGATGAGATT
715 AGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGAGCTT
* * * * *
70655984 ACATGAGTTTATGTTTTTGTTTTAAGTTGATTATGAATACGTGACAGCCTCCGGACGTACTAATG
780 ACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCGCCTCCGTACGTACTAATG
* * * *
70656049 TTC-GAAGTGCGAATACTGTAATAACATATAGAAATAC
845 TCCAG-AGTGTGAATACTATAATAAAATATAGAAATAC
** * ** * * * *
70656086 AAGAAGGTATCCATAAGCATACAGGTCGAGTTGTAATATACTTTTACAACGATACAGGTGAGTAC
1 AAGGCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
* * * * ** * * *
70656151 TCTG-GTTATCCTACTCAAAAGAGGCAAGTGCTAGATCAATTCTAACCTTAACACTAAAAGATCT
66 TCCGAG-GATCGTACCCAAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCT
* *
70656215 AATTAGTACTTTAAATTAGTTAGAGTATGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAA
130 AATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAA
*
70656280 TAATAAAACAAAATATTAAAAAAGAATAAACTTCAAGAGATA-AAAAGGGAGAATGAATCAAATC
195 TAATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAAAA-GGAGAATGAATCAAATC
** * * *
70656344 TTGATTATAAGTGATTAGCTCGCCTT-GGTAATCCACATCAACTCTCGTTTTAGGTTCCTCGTCA
259 TTGATTATGGGTGATTAGCTCG-CTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCA
* * * * * * *
70656408 ATAAACTAGTTGCTACCCTAGTAGGATTTTACGATCTTCCACTAACATGACGTGTCAACAAAGAC
323 ATCAACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCACTAACATAACGAGTCAGCAAGGAC
* * * * ** * *
70656473 TACTTATCTTCTGACCTCACAGTCTAGACTGACTAAGGTTGAAGGTGTTCACGGATGGGCCATAC
388 TACTTATCTTCCGACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATAC
* * *
70656538 CAAATTTGGGTTAATTCCCACCATGATGACTTCCT-GGGATTGTCAAGCCTAAGTTTTATTTCAT
453 CAAATTTGGGTTAATTCCCACCTTGATGACTTCCTAGGG-TTGTCAAGCCTAGGTTTTGTTTCAT
** * * *
70656602 GCACGTCCTTTCCCAAATAGCTGATCCCTTGAGTAACCCTACAAAATAATCAATAGATCATACCT
517 GTTCGTCCTTTCCCAAACAGCTGATCCGTTGAGTAACCCTACAAAACAATCAATAGATCATACCT
* * * *
70656667 CCACTTGCTAATCCCTCAAAGAGGGATTAGTTCCTCATGAAAGAATAAGGAATGAATAATAAAAT
582 CCACTTGCTAATCCCCCAAAGAGGGATTAGTTCCTCATGGAAGAATGAGGAATGAAGAATAAAAT
* * * * * *
70656732 TCTGAGAAAAGTATTCTCCAGAAACAAGTTGAAAGACTATATTATTAAAGAAGTTCAAACAATTC
647 TCTGGGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCC
* * *
70656797 TTTAGTAAC-A--TGCAAGCATTGTGCAGGTAAGAGGGATGCTTTTCTCAATAAGTTCTGATTAG
712 TTCAGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGAG
* * *
70656859 CTTACATGATTTTATGATTTTGTTTTAGGTTGATTGTGAATATGTGACTGCCTCCGTACGTACTA
777 CTTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCGCCTCCGTACGTACTA
* * *
70656924 ATGTTCAGAGTGAGAATACTGTAATAAAATATAGAAATAC
842 ATGTCCAGAGTGTGAATACTATAATAAAATATAGAAATAC
** * * * * * *
70656964 AAGGCTTTATTCTCAAGTGTACATGTCAAGTTGTAATATAGTTTTACAATGATGTAGGTGAGTAC
1 AAGGCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
* * * *
70657029 TCCGATGATCGTACCCTAA-GAAGGCAAGTGCTAGATCAATTCTAACCTAAACACTAAAAGATCT
66 TCCGAGGATCGTACCC-AAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCT
* * *
70657093 AATTAGAACTTTGAATTAGTTATAGTACAAAAGCATAAAATAAA-GATTTTTAGGGTTTTTATAA
130 AATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAA
* * *
70657157 TTATAAAACAAAATATTAAAAAGGAATAAATTTTAAGAGATAGAAAAGGAGAATGAATCAAATCT
195 TAATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAAAAGGAGAATGAATCAAATCT
* * * *
70657222 TGATTATGGGTGATTAACTTGCTTCGGTAATCCCCATCAACTGTCGTTTCAGGTTCCTCGTTAAT
260 TGATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAAT
* * *
70657287 CAACTAGTTGCTACCCTAGTAGGATCTTTCGATCTTCCCCTAACATAATGAGTCAGCAAGGACTA
325 CAACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCACTAACATAACGAGTCAGCAAGGACTA
* * *
70657352 CTTATCTTTCGACCTCACAGTCCAGACTAGCTTGGGGTGAAGGTGTTCACAGATGGGCCATACCA
390 CTTATCTTCCGACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATACCA
* * * * ** * *
70657417 AATTTGGGTTAATTCCTACCTTGCTGACTTCTTAGGTTTGTCTGGCCTAGGTTTTGTTTTATGCT
455 AATTTGGGTTAATTCCCACCTTGATGACTTCCTAGGGTTGTCAAGCCTAGGTTTTGTTTCATGTT
* * * * * * * *
70657482 CGTCCTTTCCCAAATAACTAATTCGTTGAGT-ACCTTGACAAAATAATTAATAGATCACACCTCC
520 CGTCCTTTCCCAAACAGCTGATCCGTTGAGTAACCCT-ACAAAACAATCAATAGATCATACCTCC
*
70657546 ACTTGCTAATCCCCCAAAGAGGGATTAGTTCGCT-ATGGAAGAATGAGGAATGAAGCATAAAATT
584 ACTTGCTAATCCCCCAAAGAGGGATTAGTTC-CTCATGGAAGAATGAGGAATGAAGAATAAAATT
* * *
70657610 CTAGGAAAACTATTCGCCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCCT
648 CTGGGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCCT
* *
70657675 TCAGT----A--T-----CATTGTGCAAGTAAAAGGGATGCTTTTATCAATAAGTTCTGATGAGC
713 TCAGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGAGC
* * *
70657729 TTACATGAGTTTATGTTTTTGTTTTAGGTTTATTATGAATATGTGACCGTCTCCGTACGTACTAA
778 TTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCGCCTCCGTACGTACTAA
* * * * * * *
70657794 TGTCTAGAGTATAAATACTGTAGTAAAATATACAAATAG
843 TGTCCAGAGTGTGAATACTATAATAAAATATAGAAATAC
* * *
70657833 AAGAG-GATATCCGCAAGTATACAGGTCGAGTTGTAATATAGGTTTACAACGATGTAGGTGAGTA
1 AAG-GCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTA
* * * * *
70657897 CTCTGAGTATCGTACCCAAGGGAAGTGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGACCT
65 CTCCGAGGATCGTACCCAAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCT
* *
70657962 AATTAGTGCTTTAAATTAGTTATAGTACGAAAGCAT--AATATA--A-----AGGGTTTTTATAA
130 AATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAA
* * * * *
70658018 TAATAAAACATAGTATTAAAAAGGAATAAACTTTAAAAGATAGAAAAGAAGAATGAATCAAATCT
195 TAATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAAAAGGAGAATGAATCAAATCT
* * * * *
70658083 TAATTATGGGTGATTAGCTCGCTTC-GTAATCCCCATCAACTTTCGTTTTAAGTTCCTCGTCAAA
260 TGATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAAT
* * * * *
70658147 CAACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCATTAACATAACGATTTAACAAGGACTG
325 CAACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCACTAACATAACGAGTCAGCAAGGACTA
* ** * * * * *
70658212 TTTATCTTCTAACCTCAGAGTCCAAACTGGTTTGGGGTGAAGGTGTTCACGGATGGCCCATACCA
390 CTTATCTTCCGACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATACCA
* * * * *
70658277 AATTTAGATTAAATTCCCACCTT-ATTGACTTCTTGGGGTTTTCAAGCCTAGGTTTTGTTTCAT-
455 AATTTGGGTT-AATTCCCACCTTGA-TGACTTCCTAGGGTTGTCAAGCCTAGGTTTTGTTTCATG
* * * * * * * * * *
70658340 TCACATCCTTTCCTAAACAACTGATCCATTGTGTAACCCTACAAAATAGTTAATAGATTATACCT
518 T-TCGTCCTTTCCCAAACAGCTGATCCGTTGAGTAACCCTACAAAACAATCAATAGATCATACCT
* * * * * ** *
70658405 CCAGTCGCTAATCCCCCAAACAAGGATTAGTTCCTTATTAAAGAATGAGGAATGAAGAATTAAAT
582 CCACTTGCTAATCCCCCAAAGAGGGATTAGTTCCTCATGGAAGAATGAGGAATGAAGAATAAAAT
* * *
70658470 TCTGGGAAAAGTATTCTCCAGAAACAAGTTGGAAGACAATATTATTAAAGAAGTTCAAACAATCC
647 TCTGGGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCC
* * * * *
70658535 TTCAATAACAATGTACAAGCATTGTGCAGGTAAGAGGGATGCTTTTCTCAATAAGTTCTGATTAC
712 TTCAGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGAG
* * * * * *
70658600 CTTACACGAGTTTATGATTTT-TTTCAGGTTGATTGTGAATATGAGACCACCTCCATACGTACTA
777 CTTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCGCCTCCGTACGTACTA
** *
70658664 ACATCCAGAGTGTGAATACTATAAGAAAATATAGAAATAC
842 ATGTCCAGAGTGTGAATACTATAATAAAATATAGAAATAC
* * * * * * *
70658704 AAGGTGACATTCTCAAGTGTACAGGTCAAGTTGTAATATAGTTTTACAACGATATAGGTGAGTAC
1 AAGGCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
* * * * *
70658769 TCCGACGATCGTACCCTAGGAAGGTGAGTGCCAGATCAATTCTAACCTAAAAACTAAAAGATCTA
66 TCCGAGGATCGTACCCAAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCTA
*
70658834 ATTAGTACTTTGAATTAGTTATAGTACGAAAGCATAAAATAAA-GATTTTTAGGGTTTTTATAA-
131 ATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAAT
70658897 ATATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAAAAGGAGAATGAATCAAATCT
196 A-ATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAAAAGGAGAATGAATCAAATCT
** * * * * * * *
70658962 TGATTATGGGTGATTAGCTTTCTTCAGTAGTCCACATCAACTGTCGTTTTAGGTTCCTCATCAGT
260 TGATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAAT
* * * *
70659027 CAACTAGTTGCTATCCTAGTAGGATCTTCCGATCTTCCCCTAACATAACAAGTTAGCAAGGACTA
325 CAACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCACTAACATAACGAGTCAGCAAGGACTA
* * *
70659092 CTTATCTTCCGACCTCATAGTCTAGACTGGCTTGAGGTGAAGGTGTTTACAGATGGGCCATACCA
390 CTTATCTTCCGACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATACCA
* *** *
70659157 AATTTGGGTTAATTCCCACCTTGATGACTTCTTAGGGTTGTTTGGCCTAGGTTTTGTTCCATGTT
455 AATTTGGGTTAATTCCCACCTTGATGACTTCCTAGGGTTGTCAAGCCTAGGTTTTGTTTCATGTT
** ** * * * * * *
70659222 CGTCCTAGCCTGAATAACTAATCCGTTGAGT-ACGCCGT-CAAAATAGTTAATAGATCATACCTC
520 CGTCCTTTCCCAAACAGCTGATCCGTTGAGTAAC-CC-TACAAAACAATCAATAGATCATACCTC
* *
70659285 CACTTGCTAATCCCCCAAAGAGGGACTAGTTCCTTATGGAAGAATGAGGAATGAAGAATAAAATT
583 CACTTGCTAATCCCCCAAAGAGGGATTAGTTCCTCATGGAAGAATGAGGAATGAAGAATAAAATT
* * * * * *
70659350 TTGGGAAAACTATTTTCCATAAAGAAGTTGGAAGACCATATTATTAAAGATGTTCTAACGATCCT
648 CTGGGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCCT
* * *
70659415 TCAGTATCAATTTGAAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGAGC
713 TCAGTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGAGC
* * * * * *
70659480 TTACATGAGTTTATGTTTTTGTTTCAGGTTCACTGTGAATATGTGACCGTCTCCATATGTACTAA
778 TTACATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCGCCTCCGTACGTACTAA
* ** *
70659545 AGTCCAGAGTGTGAGCACTATAATAAAATATAGAAACAC
843 TGTCCAGAGTGTGAATACTATAATAAAATATAGAAATAC
* * *
70659584 AAGGCGGTATCTGCAAGTATAGAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
1 AAGGCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
**
70659649 TCTAAGGATCGTACCCAAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCTA
66 TCCGAGGATCGTACCCAAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCTA
* **
70659714 ATTAATACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAATATTTTTAGGGTTTTTATAAT
131 ATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAAT
* * * * *
70659779 AGTAAAACAAAATAATAAAAAGGAA-AAATCTTCAAGAGATATAAAAGGAGAATGAATTAAATCA
196 AATAAAACAAAATATTAAAAAGGAATAAA-CTTCAAGAGATAGAAAAGGAGAATGAATCAAATCT
*
70659843 TGATTATGGGTGATTAGCTCACTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAAT
260 TGATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAAT
* * * * * *
70659908 CAACTAGTTGCTACCCTGGTAGGATCTTCCTG-TCTTCCCAGTAACATAATGAGTTAGTAAGGAT
325 CAACTAGTTGCTACCCTAGTAGGATCTTCC-GATCTT-CCACTAACATAACGAGTCAGCAAGGAC
* * * **
70659972 TTCTTATCTTCCAACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTATTCATGGATGGGCCATAC
388 TACTTATCTTCCGACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATAC
* ** * *
70660037 CAAATTTGGGTAAATTCCCACCTTGATGACTTCCCGGGGTTGTCAAGCCTAGGGTTTGTTTTATG
453 CAAATTTGGGTTAATTCCCACCTTGATGACTTCCTAGGGTTGTCAAGCCTAGGTTTTGTTTCATG
* * * * *
70660102 TTTGTCCTTTCCCAAATAGCTGATCTGTTGAGTAACCCAACAAAACAGTCAATAGATCATACCTC
518 TTCGTCCTTTCCCAAACAGCTGATCCGTTGAGTAACCCTACAAAACAATCAATAGATCATACCTC
* *
70660167 CGCTTGCTAATCCCCCATAGAGGGATTAGTTCCTCATGG
583 CACTTGCTAATCCCCCAAAGAGGGATTAGTTCCTCATGG
70660206 TTTTCATAGA
Statistics
Matches: 5020, Mismatches: 785, Indels: 143
0.84 0.13 0.02
Matches are distributed among these distances:
860 156 0.03
861 301 0.06
862 4 0.00
865 1 0.00
866 1 0.00
867 6 0.00
868 2 0.00
869 271 0.05
870 2 0.00
871 212 0.04
872 60 0.01
873 5 0.00
874 3 0.00
876 290 0.06
877 932 0.19
878 292 0.06
879 385 0.08
880 758 0.15
881 677 0.13
882 660 0.13
883 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (881 bp):
AAGGCGATATCCGCAAGTATACAGGTCGAGTTGTAATATAGTTTTACAATGATATAGGTGAGTAC
TCCGAGGATCGTACCCAAGGGAGGCGAGTGCCAGATCAATTCTAACCTAAACACTAAAAGATCTA
ATTAGTACTTTAAATTAGTTATAGTACGAAAGCATAAAATAAAGGATTTTTAGGGTTTTTATAAT
AATAAAACAAAATATTAAAAAGGAATAAACTTCAAGAGATAGAAAAGGAGAATGAATCAAATCTT
GATTATGGGTGATTAGCTCGCTTCGGTAATCCCCATCAACTATCGTTTCAGGTTCCTCGTCAATC
AACTAGTTGCTACCCTAGTAGGATCTTCCGATCTTCCACTAACATAACGAGTCAGCAAGGACTAC
TTATCTTCCGACCTCATAGTCCAGACTGGCTTGGGGTGAAGGTGTTCACAGATGGGCCATACCAA
ATTTGGGTTAATTCCCACCTTGATGACTTCCTAGGGTTGTCAAGCCTAGGTTTTGTTTCATGTTC
GTCCTTTCCCAAACAGCTGATCCGTTGAGTAACCCTACAAAACAATCAATAGATCATACCTCCAC
TTGCTAATCCCCCAAAGAGGGATTAGTTCCTCATGGAAGAATGAGGAATGAAGAATAAAATTCTG
GGAAAAGTATTCTCCAGAAACAAGTTGGAAGACCATATTATTAAAGAAGTTCTAACGATCCTTCA
GTAACAATGTGCAAGCATTGTGCAGGTAAAAGGGATGCTTTTCTCAATAAGTTCTGATGAGCTTA
CATGAGTTTATGTTTTTGTTTTAGGTTGATTGTGAATATGTGACCGCCTCCGTACGTACTAATGT
CCAGAGTGTGAATACTATAATAAAATATAGAAATAC
Found at i:70660371 original size:35 final size:35
Alignment explanation
Indices: 70660319--70660385 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
70660309 TACAAAAAGT
*
70660319 TTGAATGTTTTCCACAATTTAGATCTCTTGAGTAG
1 TTGAATGCTTTCCACAATTTAGATCTCTTGAGTAG
*
70660354 TTGAATGCTTTCTACAATTTAGATCTCTTGAG
1 TTGAATGCTTTCCACAATTTAGATCTCTTGAG
70660386 CACAACAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (35 bp):
TTGAATGCTTTCCACAATTTAGATCTCTTGAGTAG
Found at i:70663092 original size:17 final size:18
Alignment explanation
Indices: 70663072--70663117 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
70663062 TTTTTATCAT
*
70663072 TTATCATTTTTTGGGCA-
1 TTATCATTTATTGGGCAC
* *
70663089 TTATAATTAATTGGGCAC
1 TTATCATTTATTGGGCAC
70663107 TT-TCATTTATT
1 TTATCATTTATT
70663118 AGGCTTTAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.52
Consensus pattern (18 bp):
TTATCATTTATTGGGCAC
Found at i:70666865 original size:43 final size:43
Alignment explanation
Indices: 70666817--70666905 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
70666807 GTAGCTATAA
70666817 GTACCAAATAGCTATGGAATTCAAAAATTGAGGTCCTTATATG
1 GTACCAAATAGCTATGGAATTCAAAAATTGAGGTCCTTATATG
70666860 GTACCAAATAGCTATGGAATTCAAAAATTGAGGTCCTTATATG
1 GTACCAAATAGCTATGGAATTCAAAAATTGAGGTCCTTATATG
70666903 GTA
1 GTA
70666906 ATTAGACCGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (43 bp):
GTACCAAATAGCTATGGAATTCAAAAATTGAGGTCCTTATATG
Found at i:70668085 original size:25 final size:25
Alignment explanation
Indices: 70668057--70668134 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
70668047 TTTATAAGTG
70668057 TCCTGTTATAGGCTCTTCTTGAACT
1 TCCTGTTATAGGCTCTTCTTGAACT
* * *
70668082 TCCTGATAT-GGCTC-ACTT-AAAT
1 TCCTGTTATAGGCTCTTCTTGAACT
* *
70668104 ATCCTGTTATATGGCTATTC-GGAACT
1 -TCCTGTTATA-GGCTCTTCTTGAACT
70668130 TCCTG
1 TCCTG
70668135 ATAATAGCTT
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 3 0.08
23 11 0.28
24 5 0.12
25 17 0.43
26 4 0.10
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.40
Consensus pattern (25 bp):
TCCTGTTATAGGCTCTTCTTGAACT
Found at i:70668375 original size:14 final size:14
Alignment explanation
Indices: 70668356--70668384 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70668346 ACTACATGTG
70668356 TATCCATCGATATT
1 TATCCATCGATATT
70668370 TATCCATCGATATT
1 TATCCATCGATATT
70668384 T
1 T
70668385 CAAATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.45
Consensus pattern (14 bp):
TATCCATCGATATT
Found at i:70673307 original size:46 final size:46
Alignment explanation
Indices: 70673250--70673570 Score: 185
Period size: 46 Copynumber: 6.9 Consensus size: 46
70673240 GTGCGGGTGA
*
70673250 TATGAGCGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAT
* *
70673296 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGAATCG---GCAT
1 TATGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACAT
* * * **
70673341 TGA-GACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGG
1 T-ATGA-GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAT
* * * * * **
70673390 GACGTA-AGCCAGTGTAAGACATGTCTGGAACATGCATCAACTACGG
1 TATG-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAT
* * * * *
70673436 GAT--GTGTCAGTGTAATACCATGTCTGGGACATGGCATC-AGCACGGA-
1 TATGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCAC--AT
* * * *
70673482 TATGTGTGCTAGTGTAAGACATGTCTGGGACATGCGTC-AGCCACAT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGA-CCACAT
** * * *
70673528 CGTGAAAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 TATGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC
70673571 TTGATATGTG
Statistics
Matches: 216, Mismatches: 36, Indels: 44
0.73 0.12 0.15
Matches are distributed among these distances:
44 10 0.05
45 23 0.11
46 87 0.40
47 58 0.27
48 34 0.16
49 3 0.01
50 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAT
Found at i:70673542 original size:138 final size:136
Alignment explanation
Indices: 70673257--70673604 Score: 380
Period size: 138 Copynumber: 2.5 Consensus size: 136
70673247 TGATATGAGC
* * *
70673257 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGA-TAT--GTGTCAGTGTAAGACCATGT
* ** *
70673321 CTGGGACATGGAATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
63 CTGGGACATGGAATCAGCACGGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGCCC
70673386 TCGGGACGTAA
128 TCGGGAC--AA
* * ** *
70673397 GCCAGTGTAAGACATGTCTGGAACATGCATCAACTACGGGATGTGTCAGTGTAATACCATGTCTG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGATATGTGTCAGTGTAAGACCATGTCTG
* * * * *
70673462 GGACATGGCATCAGCACGGATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCACA
66 GGACATGGAATCAGCACGGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATC-GCC-C-
*
70673527 TCGTGA-AA
128 TCGGGACAA
* * * *
70673535 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGACT-TGATATGTGTTAGTGTAAGACC-TGTC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGATATGTGTCAGTGTAAGACCATGTC
70673598 TGGGACA
64 TGGGACA
70673605 CGGTATCGAC
Statistics
Matches: 175, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
138 94 0.54
139 31 0.18
140 45 0.26
141 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (136 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGATATGTGTCAGTGTAAGACCATGTCTG
GGACATGGAATCAGCACGGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGCCCTCG
GGACAA
Found at i:70678575 original size:40 final size:40
Alignment explanation
Indices: 70678516--70678719 Score: 248
Period size: 40 Copynumber: 5.1 Consensus size: 40
70678506 TGAATGATAC
* *
70678516 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
70678556 CCGAGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
70678596 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
70678636 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
70678676 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
70678716 CCGG
1 CCGG
70678720 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 138 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:70680356 original size:43 final size:48
Alignment explanation
Indices: 70680295--70680408 Score: 148
Period size: 51 Copynumber: 2.4 Consensus size: 48
70680285 TAAATCTGAA
* *
70680295 CTCGTTGAGTGGTTCGAGTTCAT-T-ATG-GATG-TG-AGCATCCGAG
1 CTCGTTGAGTGGTCCGAGTTCATATGATGCGATGATGTAACATCCGAG
70680338 CTCGTTGAGTGGTCCGAGTTCATGATGGATGCGATGCATGTAACATCCGAG
1 CTCGTTGAGTGGTCCGAGTTCAT-AT-GATGCGATG-ATGTAACATCCGAG
70680389 CTCGTTGAGTGGTCCGAGTT
1 CTCGTTGAGTGGTCCGAGTT
70680409 TGGTATGGAT
Statistics
Matches: 61, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
43 22 0.36
45 1 0.02
47 3 0.05
48 4 0.07
50 2 0.03
51 29 0.48
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.31
Consensus pattern (48 bp):
CTCGTTGAGTGGTCCGAGTTCATATGATGCGATGATGTAACATCCGAG
Found at i:70684498 original size:34 final size:34
Alignment explanation
Indices: 70684460--70684527 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
70684450 ATAGGTTTAA
70684460 CATGGCATAATCCAACCACAACTTGGCCAAAGCC
1 CATGGCATAATCCAACCACAACTTGGCCAAAGCC
*
70684494 CATGGCATAATCCAACCGCAACTTGGCCAAAGCC
1 CATGGCATAATCCAACCACAACTTGGCCAAAGCC
70684528 TAAGCATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.35, G:0.16, T:0.15
Consensus pattern (34 bp):
CATGGCATAATCCAACCACAACTTGGCCAAAGCC
Found at i:70689917 original size:15 final size:15
Alignment explanation
Indices: 70689897--70689930 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
70689887 CAATCCACAA
70689897 TTCACATACTCAAAC
1 TTCACATACTCAAAC
70689912 TTCACATACTCAAAC
1 TTCACATACTCAAAC
70689927 TTCA
1 TTCA
70689931 AAATCAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.38, C:0.32, G:0.00, T:0.29
Consensus pattern (15 bp):
TTCACATACTCAAAC
Found at i:70693679 original size:28 final size:28
Alignment explanation
Indices: 70693618--70693715 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
70693608 TCACAAATTG
** * *
70693618 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
70693647 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
70693675 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
70693703 GCACTAAGTGTGC
1 GCACTAAGTGTGC
70693716 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:70701356 original size:28 final size:28
Alignment explanation
Indices: 70701295--70701392 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
70701285 TCACAAATTG
** * *
70701295 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
70701324 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
70701352 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
70701380 GCACTAAGTGTGC
1 GCACTAAGTGTGC
70701393 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:70707112 original size:26 final size:27
Alignment explanation
Indices: 70707083--70707177 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 27
70707073 TCGGGTTTTC
70707083 TGTGT-TTCTGTGATTTTTAAAATTTA
1 TGTGTGTTCTGTGATTTTTAAAATTTA
*
70707109 TGTGTGTTCTG-G-TTGGTTAAAATATATA
1 TGTGTGTTCTGTGATT-TTTAAAAT-T-TA
* *
70707137 TTTCTGTGTTTCTGTGATTTTTAAAATTTG
1 --TGTGTG-TTCTGTGATTTTTAAAATTTA
70707167 TGTGTGTTCTG
1 TGTGTGTTCTG
70707178 GTTGGTTAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
25 2 0.04
26 13 0.24
27 11 0.20
28 7 0.13
30 6 0.11
31 6 0.11
32 8 0.15
33 2 0.04
ACGTcount: A:0.19, C:0.05, G:0.21, T:0.55
Consensus pattern (27 bp):
TGTGTGTTCTGTGATTTTTAAAATTTA
Found at i:70707171 original size:58 final size:58
Alignment explanation
Indices: 70707079--70707197 Score: 229
Period size: 58 Copynumber: 2.1 Consensus size: 58
70707069 ATTTTCGGGT
70707079 TTTCTGTGTTTCTGTGATTTTTAAAATTTATGTGTGTTCTGGTTGGTTAAAATATATA
1 TTTCTGTGTTTCTGTGATTTTTAAAATTTATGTGTGTTCTGGTTGGTTAAAATATATA
*
70707137 TTTCTGTGTTTCTGTGATTTTTAAAATTTGTGTGTGTTCTGGTTGGTTAAAATATATA
1 TTTCTGTGTTTCTGTGATTTTTAAAATTTATGTGTGTTCTGGTTGGTTAAAATATATA
70707195 TTT
1 TTT
70707198 TAGTAGGTTA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.21, C:0.05, G:0.19, T:0.55
Consensus pattern (58 bp):
TTTCTGTGTTTCTGTGATTTTTAAAATTTATGTGTGTTCTGGTTGGTTAAAATATATA
Found at i:70707186 original size:26 final size:26
Alignment explanation
Indices: 70707099--70707189 Score: 85
Period size: 26 Copynumber: 3.3 Consensus size: 26
70707089 TCTGTGATTT
70707099 TTAAAATTTATGTGTGTTCTGGTTGG
1 TTAAAATTTATGTGTGTTCTGGTTGG
* *
70707125 TTAAAATATATATTTCTGTGTTTCTGTGATT-T
1 TTAAAAT-T-TA--TGTGTG-TTCTG-G-TTGG
*
70707157 TTAAAATTTGTGTGTGTTCTGGTTGG
1 TTAAAATTTATGTGTGTTCTGGTTGG
70707183 TTAAAAT
1 TTAAAAT
70707190 ATATATTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
25 2 0.04
26 15 0.29
27 6 0.12
28 7 0.13
30 6 0.12
31 6 0.12
32 8 0.15
33 2 0.04
ACGTcount: A:0.23, C:0.04, G:0.21, T:0.52
Consensus pattern (26 bp):
TTAAAATTTATGTGTGTTCTGGTTGG
Found at i:70708688 original size:27 final size:26
Alignment explanation
Indices: 70708636--70708694 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
70708626 ACATATATAT
*
70708636 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
70708662 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
70708689 ATATCT
1 ATATCT
70708695 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:70710814 original size:28 final size:28
Alignment explanation
Indices: 70710749--70710849 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70710739 ATAGTGAATC
*
70710749 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
70710778 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70710806 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
70710836 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70710850 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70718758 original size:28 final size:28
Alignment explanation
Indices: 70718693--70718793 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70718683 ATAGTGAATC
*
70718693 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
70718722 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70718750 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
70718780 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70718794 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70722213 original size:47 final size:47
Alignment explanation
Indices: 70722089--70722215 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
70722079 ATTGATAAGG
* * * * *
70722089 ACCTACACCATGGCCCATAGCCAAATCAAGCTAACTTATCCCGGAGT
1 ACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCGGAAT
* ** * * * *
70722136 ATCTATACCATGGCTTGTAACCAAATCAAGGTAACTCCTCTCTGAAT
1 ACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCGGAAT
70722183 ACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 ACCTATACCATGGCCCGTAGCCAAATCAAGGTA
70722216 TTATTCACAC
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (47 bp):
ACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCGGAAT
Found at i:70728640 original size:23 final size:24
Alignment explanation
Indices: 70728612--70728658 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
70728602 TTTCATCTTG
* * *
70728612 TGAATATATCAAAATATC-ATCTA
1 TGAATAAAACAAAAAATCGATCTA
70728635 TGAATAAAACAAAAAATCGATCTA
1 TGAATAAAACAAAAAATCGATCTA
70728659 GATATGGTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (24 bp):
TGAATAAAACAAAAAATCGATCTA
Found at i:70730267 original size:47 final size:48
Alignment explanation
Indices: 70730120--70730303 Score: 271
Period size: 48 Copynumber: 3.9 Consensus size: 48
70730110 GACATTGCTG
* *
70730120 TTATGTGAGCCACTGTAAGACCATGTCTAGGACATGGCATCAGTATTA
1 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTA
* * *
70730168 TTATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTG
1 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTA
*
70730216 TTATGTGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGTATTA
1 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTA
* * * *
70730263 TTATGAGAGCCAGTGTAAGACCATATCTGTGATATGGCATC
1 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
70730304 GGCGTCGATA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
47 43 0.35
48 79 0.65
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (48 bp):
TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTA
Found at i:70730282 original size:95 final size:96
Alignment explanation
Indices: 70730118--70730303 Score: 293
Period size: 95 Copynumber: 1.9 Consensus size: 96
70730108 AAGACATTGC
* *
70730118 TGTTATGTGAGCCACTGTAAGACCATGTCTAGGACATGGCATCAGTATTATTATGTGAGCTAGTG
1 TGTTATGTGAGCCACTGTAAGACCATGTCTAGGACATGGCATCAGTATTATTATGAGAGCCAGTG
*
70730183 TAAGACCATGTCTGGGACATGGCATCAGCAT
66 TAAGACCATATCTGGGACATGGCATCAGCAT
* * *
70730214 TGTTATGTGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGTATTATTATGAGAGCCAGTG
1 TGTTATGTGAGCCACTGTAAGACCATGTCTAGGACATGGCATCAGTATTATTATGAGAGCCAGTG
* *
70730278 TAAGACCATATCTGTGATATGGCATC
66 TAAGACCATATCTGGGACATGGCATC
70730304 GGCGTCGATA
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
95 61 0.74
96 21 0.26
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (96 bp):
TGTTATGTGAGCCACTGTAAGACCATGTCTAGGACATGGCATCAGTATTATTATGAGAGCCAGTG
TAAGACCATATCTGGGACATGGCATCAGCAT
Found at i:70733578 original size:40 final size:40
Alignment explanation
Indices: 70733512--70733606 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
70733502 AAATCCGGGC
* *
70733512 GCATTTGTGCAAGTTACTAAACCCGGG-TTAAGTCCCGAAG
1 GCATTTGTGCGAGTCACTAAACCCGGGCTT-AGTCCCGAAG
* *
70733552 GCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAG
1 GCATTTGTGCGAGTCACTA-AACCCGGGCTTAGTCCCGAAG
*
70733592 GCATTTGAGCGAGTC
1 GCATTTGTGCGAGTC
70733607 GTTATATCCG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
GCATTTGTGCGAGTCACTAAACCCGGGCTTAGTCCCGAAG
Found at i:70739789 original size:2 final size:2
Alignment explanation
Indices: 70739782--70739821 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
70739772 ATGGGGTGGG
70739782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70739822 GATTTTAGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70741578 original size:19 final size:19
Alignment explanation
Indices: 70741533--70741570 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
70741523 GGTATTACCA
70741533 GAACATAACACATACCATT
1 GAACATAACACATACCATT
70741552 GAACATAACACATACCATT
1 GAACATAACACATACCATT
70741571 ATACATAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.26, G:0.05, T:0.21
Consensus pattern (19 bp):
GAACATAACACATACCATT
Found at i:70751389 original size:41 final size:41
Alignment explanation
Indices: 70751218--70751377 Score: 177
Period size: 41 Copynumber: 3.9 Consensus size: 41
70751208 CGGTCTAAAT
*
70751218 CCGAGCTTGGTCTCGAAAGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * *
70751259 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* *
70751299 CCG-GACTTAGT-TCCGAAGGGCCTTTGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
70751340 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
70751378 GAATCGGGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
39 5 0.05
40 33 0.33
41 57 0.57
42 2 0.02
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:70760006 original size:30 final size:30
Alignment explanation
Indices: 70759972--70760028 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
70759962 ATGAATTGGA
70759972 AGCTTTGGCACTAAGTCTGCGATTTAAACT
1 AGCTTTGGCACTAAGTCTGCGATTTAAACT
*
70760002 AGCTTTGGCACTAAGTGTGCGATTTAA
1 AGCTTTGGCACTAAGTCTGCGATTTAA
70760029 TTAGCTTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (30 bp):
AGCTTTGGCACTAAGTCTGCGATTTAAACT
Found at i:70762398 original size:47 final size:47
Alignment explanation
Indices: 70762279--70762406 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 47
70762269 AATCGATAAG
* * * *
70762279 TACCTACACCATGGCTCGTAGCCAAATCAAGGTAACTTATCCCAGAG
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTAACTCATCCCAGAA
* * * * * *
70762326 TACTTATACCATGGCCCGTACCCAAATCAAGGTAACTCCTCTCTGAA
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTAACTCATCCCAGAA
** *
70762373 TACCTATACCATGTTATGTAGCCAAATCAAGGTA
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTA
70762407 TCTGACTTCT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (47 bp):
TACCTATACCATGGCACGTAGCCAAATCAAGGTAACTCATCCCAGAA
Found at i:70768941 original size:40 final size:40
Alignment explanation
Indices: 70768886--70769022 Score: 231
Period size: 40 Copynumber: 3.4 Consensus size: 40
70768876 TAAGCATGTT
70768886 GAAGGCATTTGTGCGAGTTCCCAAATCCGGACTAAGATCC
1 GAAGGCATTTGTGCGAGTTCCCAAATCCGGACTAAGATCC
70768926 GAAGGCATTTGTGCGAGTTCCCAAATCCGGACTAAGATCC
1 GAAGGCATTTGTGCGAGTTCCCAAATCCGGACTAAGATCC
**
70768966 GAAGGCATTTGTGCGAGTTCCCAAATCCGGGTTAAG-TCCC
1 GAAGGCATTTGTGCGAGTTCCCAAATCCGGACTAAGAT-CC
*
70769006 AAAGGCATTTGTGCGAG
1 GAAGGCATTTGTGCGAG
70769023 CTATTATAAT
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 1 0.01
40 92 0.99
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTCCCAAATCCGGACTAAGATCC
Found at i:70772509 original size:20 final size:20
Alignment explanation
Indices: 70772486--70772523 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
70772476 TGGCTTCGGT
70772486 CCATGATATAGCACTTCGAC
1 CCATGATATAGCACTTCGAC
70772506 CCATGATATAGCACTTCG
1 CCATGATATAGCACTTCG
70772524 GGCGTGAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (20 bp):
CCATGATATAGCACTTCGAC
Found at i:70779358 original size:48 final size:48
Alignment explanation
Indices: 70779297--70779861 Score: 859
Period size: 48 Copynumber: 11.9 Consensus size: 48
70779287 ATATACACAC
*
70779297 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
70779345 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70779391 ATCTCATACATATTTTACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** * *
70779439 ATCTCATGTATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70779487 ATCTCATACATATTTCACACCAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70779535 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** * *
70779583 ATCTCATGTATAGTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70779631 ATCTCATACATATTTCAAACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * * *
70779679 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCGC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70779725 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** * *
70779773 ATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** *
70779821 ATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
70779862 CACATATATA
Statistics
Matches: 469, Mismatches: 44, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
46 83 0.18
48 386 0.82
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:70779515 original size:190 final size:191
Alignment explanation
Indices: 70779297--70779861 Score: 902
Period size: 190 Copynumber: 3.0 Consensus size: 191
70779287 ATATACACAC
* *
70779297 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * ** * *
70779362 CATTAGCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTTACACTAGCCATTCGGCTTT
66 CACTAGCCATTCGGCTTTACCACAATACATATCTCATGTATATTTCACATTAGCCATTCGGCTTT
*
70779426 ACCACATATACATATCTCATGTATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
131 ACCACATATACATATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
70779487 ATCTCATACATATTTCACACCAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
70779552 CACTAGCCATTCGGCTTTACCACATATACATATCTCATGTATAGTTCACATTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACA-ATACATATCTCATGTATATTTCACATTAGCCATTCGGCTT
** * *
70779617 TACCACATATACATATCTCATACATATTTCAAACTAGCCATTCGGCTTTACCACATATACAT
130 TACCACATATACATATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * * *
70779679 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCGC--ACACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
70779742 CACTAGCCATTCGGCTTTACCACATATACATATCTCATGTATATTTCACATTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACA-ATACATATCTCATGTATATTTCACATTAGCCATTCGGCTT
*
70779807 TACCACGTATACATATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACA
130 TACCACATATACATATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACA
70779862 CACATATATA
Statistics
Matches: 346, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
190 220 0.64
192 126 0.36
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (191 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACAATACATATCTCATGTATATTTCACATTAGCCATTCGGCTTT
ACCACATATACATATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:70795458 original size:40 final size:40
Alignment explanation
Indices: 70795352--70795535 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
70795342 TGCTGGAAAT
* * * * * **
70795352 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
70795392 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
70795432 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
70795470 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
70795511 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
70795536 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:70798487 original size:79 final size:80
Alignment explanation
Indices: 70798344--70798551 Score: 181
Period size: 79 Copynumber: 2.6 Consensus size: 80
70798334 ACCTTCGGAG
* * ** * * * *
70798344 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
70798408 CCAAGGCCTACAGGA
66 CCAAGGCCTACAGGA
* * * *
70798423 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * * *
70798485 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACAGGA
* * * *
70798502 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
70798552 TTATAATTTC
Statistics
Matches: 103, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
78 2 0.02
79 64 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACAGGA
Found at i:70798496 original size:40 final size:40
Alignment explanation
Indices: 70798444--70798551 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
70798434 TATCACGATT
** *
70798444 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
70798484 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
70798524 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
70798552 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:70811300 original size:13 final size:13
Alignment explanation
Indices: 70811282--70811307 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70811272 ATATTATAAT
70811282 TATTTTATGTTAA
1 TATTTTATGTTAA
70811295 TATTTTATGTTAA
1 TATTTTATGTTAA
70811308 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:70814097 original size:28 final size:28
Alignment explanation
Indices: 70814028--70814128 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70814018 GACAAGATTG
* * * *
70814028 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
70814058 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70814086 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
70814115 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70814129 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70822017 original size:28 final size:28
Alignment explanation
Indices: 70821948--70822048 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70821938 GACAAGATTG
* * * *
70821948 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
70821978 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70822006 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
70822035 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70822049 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70832681 original size:46 final size:46
Alignment explanation
Indices: 70832614--70832742 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
70832604 TGTAACCCGC
* * * *
70832614 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
70832660 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
70832706 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70832743 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70832761 original size:46 final size:45
Alignment explanation
Indices: 70832622--70832761 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
70832612 GCCCATAAGC
* ** * *
70832622 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
70832668 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
70832714 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
70832760 GA
1 GA
70832762 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:70835737 original size:43 final size:43
Alignment explanation
Indices: 70835618--70835737 Score: 111
Period size: 43 Copynumber: 2.8 Consensus size: 43
70835608 CGTATCAACT
** *
70835618 CCATATCCCAGATATGGTCTTACTTGTGAA-CTCATATCGATG
1 CCATATCCCAGATATGGTCTTACACGTAAATCTCATATCGATG
* * ** * *
70835660 CCAATAGCCCAGCTATCATCCTACAC--AAAGTCTCATATTGATG
1 CC-ATATCCCAGATATGGTCTTACACGTAAA-TCTCATATCGATG
*
70835703 CCATATCCCAAATATGGTCTTACACGTAAATCTCA
1 CCATATCCCAGATATGGTCTTACACGTAAATCTCA
70835738 ATAACCCTAA
Statistics
Matches: 58, Mismatches: 15, Indels: 9
0.71 0.18 0.11
Matches are distributed among these distances:
41 2 0.03
42 19 0.33
43 34 0.59
44 3 0.05
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (43 bp):
CCATATCCCAGATATGGTCTTACACGTAAATCTCATATCGATG
Found at i:70844850 original size:94 final size:94
Alignment explanation
Indices: 70844689--70845158 Score: 859
Period size: 94 Copynumber: 5.0 Consensus size: 94
70844679 AATGTGACCG
* *
70844689 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70844754 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
70844783 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGTACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70844848 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
70844877 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70844942 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
70844971 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
70845036 GAATTAAATGCCACTTTGTCTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
70845065 TATATGCTTTTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
70845130 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
70845159 GAATGTCGAT
Statistics
Matches: 364, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 364 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:70845219 original size:24 final size:24
Alignment explanation
Indices: 70845187--70845250 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
70845177 GAAAATTTCA
* *
70845187 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
70845211 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
70845235 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
70845251 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:70849907 original size:71 final size:71
Alignment explanation
Indices: 70849821--70849984 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
70849811 CGATTTGTCT
70849821 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
70849886 CTTTCA
66 CTTTCA
*
70849892 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
70849957 CTTTCA
66 CTTTCA
70849963 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70849985 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:70850022 original size:71 final size:70
Alignment explanation
Indices: 70849821--70850018 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
70849811 CGATTTGTCT
* * *
70849821 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
70849886 CTTTCA
65 CTTTCA
* * * *
70849892 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
70849957 CTTTCA
65 CTTTCA
* *
70849963 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
70850019 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:70856993 original size:71 final size:71
Alignment explanation
Indices: 70856907--70857070 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70856897 CGATTTGTCT
70856907 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70856972 CTTTCA
66 CTTTCA
70856978 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70857043 CTTTCA
66 CTTTCA
70857049 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70857071 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70857108 original size:71 final size:70
Alignment explanation
Indices: 70856907--70857104 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
70856897 CGATTTGTCT
* * * *
70856907 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70856972 CTTTCA
65 CTTTCA
* * * *
70856978 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70857043 CTTTCA
65 CTTTCA
* *
70857049 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70857105 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70865144 original size:29 final size:29
Alignment explanation
Indices: 70865076--70865148 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
70865066 GTGACGAGAT
* * *
70865076 TGGCACTAAGCGTACGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70865105 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70865134 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
70865149 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:70865164 original size:29 final size:29
Alignment explanation
Indices: 70865076--70865208 Score: 99
Period size: 29 Copynumber: 4.6 Consensus size: 29
70865066 GTGACGAGAT
* * * * **
70865076 TGGCACTAAGCGTACGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
* **
70865105 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
70865134 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
* * * *
70865163 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
70865192 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
70865209 AATCGAGTAT
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 2 0.02
29 83 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:70869463 original size:40 final size:39
Alignment explanation
Indices: 70869404--70869587 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 39
70869394 TCGAATGATG
* *
70869404 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTTACTAAA
* *
70869444 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
70869484 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
70869522 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
70869563 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
70869588 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
38 26 0.20
39 18 0.14
40 72 0.56
41 12 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70869539 original size:78 final size:80
Alignment explanation
Indices: 70869404--70869585 Score: 246
Period size: 78 Copynumber: 2.3 Consensus size: 80
70869394 TCGAATGATG
* *
70869404 TCCGGGCTAAGTCCTGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
70869469 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
70869483 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
70869545 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
70869562 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70869586 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 52 0.57
79 27 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:70878367 original size:24 final size:27
Alignment explanation
Indices: 70878312--70878368 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 27
70878302 AGCAATTTAA
*
70878312 TTTTTTCTTTTATGTTCTTTTCACTTCC
1 TTTTTTCTTTTATGTTCTTTCCACTT-C
70878340 TTTTTT-TTTT-TGTT-TTTCCA-TTC
1 TTTTTTCTTTTATGTTCTTTCCACTTC
70878363 TTTTTT
1 TTTTTT
70878369 ACTTCCCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 7 0.25
24 2 0.07
25 5 0.18
26 4 0.14
27 4 0.14
28 6 0.21
ACGTcount: A:0.05, C:0.16, G:0.04, T:0.75
Consensus pattern (27 bp):
TTTTTTCTTTTATGTTCTTTCCACTTC
Found at i:70878452 original size:33 final size:31
Alignment explanation
Indices: 70878393--70878461 Score: 84
Period size: 33 Copynumber: 2.2 Consensus size: 31
70878383 TTTTCTCCCT
**
70878393 TTTCCATTTCATTTAACATATTTTTTTGTATG
1 TTTCCATTTCATTTAACATAACTTTTT-TATG
* *
70878425 CTTTCCATTTCTTTTAATATAACTTTTTTATG
1 -TTTCCATTTCATTTAACATAACTTTTTTATG
70878457 TTTCC
1 TTTCC
70878462 GAAATAAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 5 0.16
32 4 0.12
33 23 0.72
ACGTcount: A:0.20, C:0.16, G:0.04, T:0.59
Consensus pattern (31 bp):
TTTCCATTTCATTTAACATAACTTTTTTATG
Found at i:70885318 original size:30 final size:30
Alignment explanation
Indices: 70885260--70885318 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
70885250 ATTTTCGAGC
**
70885260 CTAGGGGCAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
*
70885290 CTAGGGGTAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
70885319 ATATAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:70885713 original size:46 final size:45
Alignment explanation
Indices: 70885653--70885827 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
70885643 GGGTCATTGT
* *
70885653 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTACGA
* *
70885699 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT---ACGA
* * * * *
70885747 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-AACGT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTACGA
*
70885793 GAGCCAGTGTAATACATGTCTGGGACATGCATCGG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG
70885828 ATATGAGATG
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
45 4 0.04
46 51 0.49
47 27 0.26
48 21 0.20
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTACGA
Found at i:70892734 original size:40 final size:40
Alignment explanation
Indices: 70892672--70892889 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
70892662 AAACCAAGTA
* * ** * * *
70892672 CCTTCGGGATTTA-ACCGGATATAGCCACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * *
70892711 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGGACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70892751 CCTTCGGGACTTAGCCCGGATATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70892791 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* * *
70892831 CCTTCGGGATTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
70892871 CCTTCGGGACTTAGTCCGG
1 CCTTCGGGACTTAGCCCGG
70892890 TTATCATCCG
Statistics
Matches: 155, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 14 0.09
40 140 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70899572 original size:40 final size:40
Alignment explanation
Indices: 70899380--70899565 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
70899370 TCGAATGATG
* * * * *
70899380 TCCGGGCTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
70899420 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70899460 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70899500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70899541 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70899566 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70899572 original size:80 final size:79
Alignment explanation
Indices: 70899433--70899598 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
70899423 GGACTAAGAT
**
70899433 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
70899497 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
70899513 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
70899576 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
70899592 CCGAAGG
1 CCGAAGG
70899599 TACGTGATTC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
79 17 0.22
80 57 0.75
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:70907736 original size:40 final size:40
Alignment explanation
Indices: 70907544--70907729 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
70907534 TCGAATGATG
* * * * *
70907544 TCCGGGCTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
70907584 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70907624 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70907664 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70907705 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70907730 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70907736 original size:80 final size:79
Alignment explanation
Indices: 70907597--70907762 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
70907587 GGACTAAGAT
**
70907597 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
70907661 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
70907677 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
70907740 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
70907756 CCGAAGG
1 CCGAAGG
70907763 TACGTGATTC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
79 17 0.22
80 57 0.75
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:70916588 original size:43 final size:44
Alignment explanation
Indices: 70916541--70916628 Score: 151
Period size: 43 Copynumber: 2.0 Consensus size: 44
70916531 GTTACCAAGA
*
70916541 TGTGATTACATGTAAGACTATGTCTGGGACATTGGCATT-TTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTTAT
*
70916584 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTTAT
70916628 T
1 T
70916629 CGATTTAGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 37 0.88
44 5 0.12
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.39
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTTAT
Found at i:70916640 original size:43 final size:43
Alignment explanation
Indices: 70916544--70916664 Score: 149
Period size: 43 Copynumber: 2.8 Consensus size: 43
70916534 ACCAAGATGT
* * *
70916544 GATTACATGTAAGACTATGTCTGGGACATTGGCATTTTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTTTATTGC
70916587 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTATT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATT-TTATTGC
* *
70916630 GATTTA-GTGTAAGA-CATTGTCTGGGATAGTGGCAT
1 GA-TTACGTGTAAGACCA-TGTCTGGGACATTGGCAT
70916665 CGATATATGA
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
42 2 0.03
43 60 0.86
44 8 0.11
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.36
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATTTTATTGC
Found at i:70923853 original size:71 final size:71
Alignment explanation
Indices: 70923767--70923930 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
70923757 CGATTTGTCT
70923767 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
70923832 CTTTCA
66 CTTTCA
*
70923838 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
70923903 CTTTCA
66 CTTTCA
70923909 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70923931 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:70923968 original size:71 final size:70
Alignment explanation
Indices: 70923767--70923964 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
70923757 CGATTTGTCT
* * *
70923767 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
70923832 CTTTCA
65 CTTTCA
* * * *
70923838 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
70923903 CTTTCA
65 CTTTCA
* *
70923909 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
70923965 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:70928641 original size:40 final size:40
Alignment explanation
Indices: 70928597--70928677 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
70928587 CCTGACAGAC
70928597 TTCATATGTTGCCATAGCCCAACTATGGTCTTACACATTA
1 TTCATATGTTGCCATAGCCCAACTATGGTCTTACACATTA
*
70928637 TTCATATGTTGCCATAGCCCCACTATGGTCTTACACATTA
1 TTCATATGTTGCCATAGCCCAACTATGGTCTTACACATTA
70928677 T
1 T
70928678 GATGCCAAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (40 bp):
TTCATATGTTGCCATAGCCCAACTATGGTCTTACACATTA
Found at i:70935400 original size:27 final size:27
Alignment explanation
Indices: 70935370--70935578 Score: 301
Period size: 27 Copynumber: 7.7 Consensus size: 27
70935360 TCCCACCTTA
* * *
70935370 CAGGGGTATTTTAGTAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
70935397 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
70935424 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
70935451 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
70935478 CAAGGGTATTTTGGTGATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
70935505 TAGGGGTATTTCGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
70935532 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
70935559 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
70935579 AGCTAATCGA
Statistics
Matches: 159, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:70935435 original size:54 final size:54
Alignment explanation
Indices: 70935373--70935578 Score: 340
Period size: 54 Copynumber: 3.8 Consensus size: 54
70935363 CACCTTACAG
* * *
70935373 GGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
70935427 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
* * * **
70935481 GGGTATTTTGGTGATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
70935535 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
70935579 AGCTAATCGA
Statistics
Matches: 141, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 141 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
Found at i:70942384 original size:27 final size:26
Alignment explanation
Indices: 70942336--70942395 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
70942326 ACAAGGCTGC
*
70942336 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
70942363 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
70942389 CAGATAT
1 CAGATAT
70942396 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70944466 original size:42 final size:41
Alignment explanation
Indices: 70944357--70944467 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 41
70944347 AATCGACAAA
* * ** *
70944357 GTAAGACCATGTCTGGGACATTGGCATCGAATTTGATTTCGT
1 GTAAGACCATGTCTGGGA-AATGGCATCGAATGTGATAACAT
*
70944399 GTAAGACCCTGTCTGGGAAAGTGGCATCGATATGTGATAACAT
1 GTAAGACCATGTCTGGGAAA-TGGCATCGA-ATGTGATAACAT
* *
70944442 GTAAGACCATATCTAGGAAATGGCAT
1 GTAAGACCATGTCTGGGAAATGGCAT
70944468 TGTACGAGCT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
41 1 0.02
42 32 0.55
43 25 0.43
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (41 bp):
GTAAGACCATGTCTGGGAAATGGCATCGAATGTGATAACAT
Found at i:70946255 original size:43 final size:43
Alignment explanation
Indices: 70946205--70946341 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
70946195 TCCCGGATGT
* * *
70946205 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATAG
1 GGTCTTACATGTAAATCAATATCGATGCCTATGTCCCAGACAG
* * *
70946248 GGTCTTACACG-AAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAAATCA-ATATCGATGCCTATGTCCCAGACAG
* * * * *
70946290 GGTCTTATATGTAAATCTAA-ATCGAGGCCTGTGTCCTAGACAC
1 GGTCTTACATGTAAATC-AATATCGATGCCTATGTCCCAGACAG
*
70946333 GATCTTACA
1 GGTCTTACA
70946342 CGATATCTCA
Statistics
Matches: 75, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
42 32 0.43
43 42 0.56
44 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCTATGTCCCAGACAG
Found at i:70951255 original size:42 final size:41
Alignment explanation
Indices: 70951146--70951256 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 41
70951136 AATCGACAAA
* * ** *
70951146 GTAAGACCATGTCTGGGACATTGGCATCGAATTTGATTTCGT
1 GTAAGACCATGTCTGGGA-AATGGCATCGAATGTGATAACAT
*
70951188 GTAAGACCCTGTCTGGGAAAGTGGCATCGATATGTGATAACAT
1 GTAAGACCATGTCTGGGAAA-TGGCATCGA-ATGTGATAACAT
* *
70951231 GTAAGACCATATCTAGGAAATGGCAT
1 GTAAGACCATGTCTGGGAAATGGCAT
70951257 TGTACGAGCT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
41 1 0.02
42 32 0.55
43 25 0.43
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (41 bp):
GTAAGACCATGTCTGGGAAATGGCATCGAATGTGATAACAT
Found at i:70953043 original size:43 final size:43
Alignment explanation
Indices: 70952993--70953129 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
70952983 TCCCGGATGT
* * *
70952993 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATAG
1 GGTCTTACATGTAAATCAATATCGATGCCTATGTCCCAGACAG
* * *
70953036 GGTCTTACACG-AAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAAATCA-ATATCGATGCCTATGTCCCAGACAG
* * * * *
70953078 GGTCTTATATGTAAATCTAA-ATCGAGGCCTGTGTCCTAGACAC
1 GGTCTTACATGTAAATC-AATATCGATGCCTATGTCCCAGACAG
*
70953121 GATCTTACA
1 GGTCTTACA
70953130 CGATATCTCA
Statistics
Matches: 75, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
42 32 0.43
43 42 0.56
44 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCTATGTCCCAGACAG
Found at i:70955936 original size:27 final size:26
Alignment explanation
Indices: 70955888--70955947 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
70955878 ACAAGGCTGC
*
70955888 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
70955915 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
70955941 CAGATAT
1 CAGATAT
70955948 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70958028 original size:42 final size:41
Alignment explanation
Indices: 70957919--70958029 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 41
70957909 AATCGACAAA
* * ** *
70957919 GTAAGACCATGTCTGGGACATTGGCATCGAATTTGATTTCGT
1 GTAAGACCATGTCTGGGA-AATGGCATCGAATGTGATAACAT
*
70957961 GTAAGACCCTGTCTGGGAAAGTGGCATCGATATGTGATAACAT
1 GTAAGACCATGTCTGGGAAA-TGGCATCGA-ATGTGATAACAT
* *
70958004 GTAAGACCATATCTAGGAAATGGCAT
1 GTAAGACCATGTCTGGGAAATGGCAT
70958030 TGTACGAGCT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
41 1 0.02
42 32 0.55
43 25 0.43
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (41 bp):
GTAAGACCATGTCTGGGAAATGGCATCGAATGTGATAACAT
Found at i:70959818 original size:43 final size:43
Alignment explanation
Indices: 70959768--70959904 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
70959758 TCCCGGATGT
* * *
70959768 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATAG
1 GGTCTTACATGTAAATCAATATCGATGCCTATGTCCCAGACAG
* * *
70959811 GGTCTTACACG-AAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAAATCA-ATATCGATGCCTATGTCCCAGACAG
* * * * *
70959853 GGTCTTATATGTAAATCTAA-ATCGAGGCCTGTGTCCTAGACAC
1 GGTCTTACATGTAAATC-AATATCGATGCCTATGTCCCAGACAG
*
70959896 GATCTTACA
1 GGTCTTACA
70959905 CGATATCTCA
Statistics
Matches: 75, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
42 32 0.43
43 42 0.56
44 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCTATGTCCCAGACAG
Found at i:70965109 original size:13 final size:13
Alignment explanation
Indices: 70965091--70965117 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70965081 CTCGGCAGGA
70965091 ACACGCCCGTGTG
1 ACACGCCCGTGTG
70965104 ACACGCCCGTGTG
1 ACACGCCCGTGTG
70965117 A
1 A
70965118 GTCATGCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.37, G:0.30, T:0.15
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:70969314 original size:40 final size:40
Alignment explanation
Indices: 70969122--70969307 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
70969112 TCGAATGATG
* * * * *
70969122 TCCGGGCTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
70969162 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70969202 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70969242 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70969283 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70969308 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70969314 original size:80 final size:79
Alignment explanation
Indices: 70969175--70969340 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
70969165 GGACTAAGAT
**
70969175 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
70969239 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
70969255 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
70969318 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
70969334 CCGAAGG
1 CCGAAGG
70969341 TACGTGATTC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
79 17 0.22
80 57 0.75
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:70977413 original size:40 final size:40
Alignment explanation
Indices: 70977268--70977453 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
70977258 TTGAATGATG
* * * * *
70977268 TCCGGGCTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
70977308 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70977348 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70977388 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70977429 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70977454 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70977460 original size:80 final size:79
Alignment explanation
Indices: 70977321--70977486 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
70977311 GGACTAAGAT
**
70977321 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
70977385 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* * *
70977401 CCGAAGGCATTTGTGTGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
70977464 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
70977480 CCGAAGG
1 CCGAAGG
70977487 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 17 0.23
80 56 0.75
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:70995032 original size:23 final size:23
Alignment explanation
Indices: 70994998--70995063 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 23
70994988 AATAAGATTG
*
70994998 AAAAATATGAATCATGAGATGAA
1 AAAAATAAGAATCATGAGATGAA
*
70995021 AAAAATACGAATCATGAGATGAA
1 AAAAATAAGAATCATGAGATGAA
*
70995044 AAAAATAAAAATCATGAGAT
1 AAAAATAAGAATCATGAGAT
70995064 CTATGAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.59, C:0.06, G:0.15, T:0.20
Consensus pattern (23 bp):
AAAAATAAGAATCATGAGATGAA
Done.