Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 23 of 438
Found at i:6044431 original size:29 final size:27
Alignment explanation
Indices: 6044382--6044438 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
6044372 TTATTTAAGT
*
6044382 AATAATATTAACAATAAAGAAATGAAATA
1 AATAATATAAACAATAAAG-AAT-AAATA
**
6044411 AATAATATAAACAATTTAGAATAAATA
1 AATAATATAAACAATAAAGAATAAATA
6044438 A
1 A
6044439 TAAGACAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.24
28 3 0.12
29 16 0.64
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.26
Consensus pattern (27 bp):
AATAATATAAACAATAAAGAATAAATA
Found at i:6044449 original size:22 final size:23
Alignment explanation
Indices: 6044406--6044462 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
6044396 TAAAGAAATG
6044406 AAATAAATAATATAAACAA-TTT
1 AAATAAATAATATAAACAATTTT
*
6044428 AGAATAAATAATA-AGACAATTTT
1 A-AATAAATAATATAAACAATTTT
*
6044451 AAACAAATAATA
1 AAATAAATAATA
6044463 CATAAAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 16 0.52
23 15 0.48
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (23 bp):
AAATAAATAATATAAACAATTTT
Found at i:6044740 original size:35 final size:35
Alignment explanation
Indices: 6044691--6044836 Score: 211
Period size: 35 Copynumber: 4.0 Consensus size: 35
6044681 ATAATCTTCA
* *
6044691 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
6044727 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
6044762 ATGATTGCAATCTTAGATATATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAG----ATATGATACAATCTTAGAT
6044801 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
6044837 AGATATGATT
Statistics
Matches: 102, Mismatches: 2, Indels: 11
0.89 0.02 0.10
Matches are distributed among these distances:
35 49 0.48
36 5 0.05
37 13 0.13
39 35 0.34
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:6044797 original size:39 final size:39
Alignment explanation
Indices: 6044708--6044836 Score: 198
Period size: 39 Copynumber: 3.5 Consensus size: 39
6044698 GTAATCTTAG
*
6044708 ATATGATACAATCTTAAATATGATTGCAATCTTAG----
1 ATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
6044743 ATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
1 ATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
6044782 ATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
1 ATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
*
6044821 -GAT-ATACAATCTTAGA
1 ATATGATACAATCTTAGA
6044837 AGATATGATT
Statistics
Matches: 88, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
35 34 0.39
37 13 0.15
38 2 0.02
39 39 0.44
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (39 bp):
ATATGATACAATCTTAGATATGATTGCAATCTTAGATAT
Found at i:6045156 original size:12 final size:11
Alignment explanation
Indices: 6045141--6045174 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
6045131 TATTTTTAAT
6045141 TTATTATATATA
1 TTATT-TATATA
6045153 TTATTTATTATA
1 TTATTTA-TATA
6045165 TTATTTATAT
1 TTATTTATAT
6045175 TTTTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:6045160 original size:16 final size:15
Alignment explanation
Indices: 6045139--6045241 Score: 54
Period size: 16 Copynumber: 6.8 Consensus size: 15
6045129 CTTATTTTTA
6045139 ATTTATTATATATATT
1 ATTTATTATAT-TATT
6045155 ATTTATTATATTATT
1 ATTTATTATATTATT
* **
6045170 -TATATT-T-TTAAA
1 ATTTATTATATTATT
*
6045182 ATTTATAAATTATTATT
1 ATTTAT-TA-TATTATT
*
6045199 ATATATTATATT-TT
1 ATTTATTATATTATT
* *
6045213 AACTTATATATCTTATAT
1 -ATTTAT-TATATTAT-T
6045231 ATTTATT-TATT
1 ATTTATTATATT
6045242 TATATTATAC
Statistics
Matches: 64, Mismatches: 14, Indels: 19
0.66 0.14 0.20
Matches are distributed among these distances:
12 3 0.05
13 5 0.08
14 7 0.11
15 15 0.23
16 19 0.30
17 14 0.22
18 1 0.02
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTATTATATTATT
Found at i:6045194 original size:7 final size:7
Alignment explanation
Indices: 6045147--6045296 Score: 57
Period size: 7 Copynumber: 21.4 Consensus size: 7
6045137 TAATTTATTA
6045147 TATATAT
1 TATATAT
*
6045154 TATTTAT
1 TATATAT
6045161 TATATTAT
1 TATA-TAT
6045169 T-TATATT
1 TATATA-T
* *
6045176 TTTAAAATT
1 TAT-ATA-T
*
6045185 TATAAAT
1 TATATAT
6045192 TAT-TAT
1 TATATAT
6045198 TATATAT
1 TATATAT
6045205 TATAT-T
1 TATATAT
6045211 T-TA-ACT
1 TATATA-T
6045217 TATATATCT
1 TATATA--T
6045226 TATATATT
1 TATATA-T
*
6045234 TATTTAT
1 TATATAT
6045241 T-TATAT
1 TATATAT
*
6045247 TATACAT
1 TATATAT
6045254 TAT-T-T
1 TATATAT
* *
6045259 TAAAAACT
1 TATATA-T
*
6045267 TACAT-T
1 TATATAT
*
6045273 TTTATAT
1 TATATAT
6045280 TATATAT
1 TATATAT
*
6045287 TATAAAT
1 TATATAT
6045294 TAT
1 TAT
6045297 TTCATTTATT
Statistics
Matches: 110, Mismatches: 18, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
5 5 0.05
6 20 0.18
7 52 0.47
8 19 0.17
9 14 0.13
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (7 bp):
TATATAT
Found at i:6045211 original size:26 final size:26
Alignment explanation
Indices: 6045182--6045367 Score: 83
Period size: 26 Copynumber: 7.2 Consensus size: 26
6045172 TATTTTTAAA
6045182 ATTTATAAATTATTATTATATATTAT
1 ATTTATAAATTATTATTATATATTAT
*
6045208 ATTT-TAACTTATATATCTTATATATT-T
1 ATTTATAAATTAT-TA--TTATATATTAT
*
6045235 ATTTAT---TTA-TATTATACATTAT
1 ATTTATAAATTATTATTATATATTAT
*
6045257 -TTTAAAAACTTACATT-TT-TATATTAT
1 ATTTATAAA-TT--ATTATTATATATTAT
6045283 ATATTATAAATTATTTCATT-TATTATTAT
1 AT-TTATAAATTA-TT-ATTATA-TATTAT
* * * *
6045312 TTTTATATACTATCA-TATATTATCTAT
1 ATTTATAAATTATTATTATA-TAT-TAT
* *
6045339 -TTTA-AAATTCACTATTAAATATTAT
1 ATTTATAAATT-ATTATTATATATTAT
6045364 ATTT
1 ATTT
6045368 TTATGTATTA
Statistics
Matches: 123, Mismatches: 14, Indels: 46
0.67 0.08 0.25
Matches are distributed among these distances:
21 12 0.10
22 1 0.01
23 2 0.02
25 20 0.16
26 34 0.28
27 18 0.15
28 29 0.24
29 7 0.06
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTTATAAATTATTATTATATATTAT
Found at i:6045627 original size:3 final size:3
Alignment explanation
Indices: 6045619--6045653 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
6045609 TATGTTACTA
*
6045619 TAT TAT TAT TAT TAT TAT TAT TTT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
6045654 GTATTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:6051155 original size:6 final size:6
Alignment explanation
Indices: 6051140--6051198 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
6051130 ACTTCTATTT
* * * *
6051140 AAAAAA AAAAAG AAAAAG -AAAAG AAAAAG -AGAA- AAAAAT AAAGAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
6051185 AAAAAAG AAAAAG A
1 -AAAAAG AAAAAG A
6051199 TGGAGAGGCC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
5 11 0.26
6 27 0.63
7 5 0.12
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:6051176 original size:21 final size:21
Alignment explanation
Indices: 6051142--6051196 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
6051132 TTCTATTTAA
*
6051142 AAAAAAAAAGAAAAAGAAA-AG
1 AAAAAAGAA-AAAAAGAAAGAG
*
6051163 AAAAAGAGAAAAAAATAAAGAG
1 AAAAA-AGAAAAAAAGAAAGAG
6051185 AAAAAAGAAAAA
1 AAAAAAGAAAAA
6051197 GATGGAGAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 20 0.67
22 10 0.33
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAAAAGAAAAAAAGAAAGAG
Found at i:6051186 original size:27 final size:28
Alignment explanation
Indices: 6051144--6051198 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
6051134 CTATTTAAAA
6051144 AAAAAAAGAAAAAG-AAAAGAAAAAGAG
1 AAAAAAAGAAAAAGAAAAAGAAAAAGAG
* *
6051171 AAAAAAATAAAGAGAAAAAAGAAAAAGA
1 AAAAAAAGAAAAAG-AAAAAGAAAAAGA
6051199 TGGAGAGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 12 0.50
29 12 0.50
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (28 bp):
AAAAAAAGAAAAAGAAAAAGAAAAAGAG
Found at i:6051205 original size:21 final size:19
Alignment explanation
Indices: 6051145--6051204 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
6051135 TATTTAAAAA
*
6051145 AAAAAAGAAAAAGA-AAAG
1 AAAAAAGAAAAAGATAGAG
*
6051163 AAAAAGAGAAAAAAATAAAGAG
1 AAAAA-AGAAAAAGAT--AGAG
*
6051185 AAAAAAGAAAAAGATGGAG
1 AAAAAAGAAAAAGATAGAG
6051204 A
1 A
6051205 GGCCAAGGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
18 5 0.15
19 12 0.35
21 9 0.26
22 8 0.24
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (19 bp):
AAAAAAGAAAAAGATAGAG
Found at i:6052221 original size:44 final size:45
Alignment explanation
Indices: 6052062--6052389 Score: 214
Period size: 44 Copynumber: 7.4 Consensus size: 45
6052052 GGGACAATGT
* *
6052062 AGATTAAAGA-AACAAGATTTGGCATCCCTATGTTTATAGGGAAC-
1 AGATTAAAGATAAC-AGATCTGGCATCCCTGTGTTTATAGGGAACA
* ** * * * * *
6052106 AGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGCGAAGC-
1 AGATTAAAGATAACAGATCTGGCATCCCTGTGTTTATAGGGAA-CA
* ** *
6052151 AGATTGAAGATTTCAG--CATGGTATCCCTGTGTTTATAGGGAACA
1 AGATTAAAGATAACAGATC-TGGCATCCCTGTGTTTATAGGGAACA
* * *
6052195 AG-TTGAAGA-AACAAGATTTGGCATCCCTATGTTTATAGGGAAC-
1 AGATTAAAGATAAC-AGATCTGGCATCCCTGTGTTTATAGGGAACA
* ** * * * * *
6052238 AGATCAAAGATAGTAGATCTGACATTCCTGTGCTTACAGCGAAGC-
1 AGATTAAAGATAACAGATCTGGCATCCCTGTGTTTATAGGGAA-CA
**
6052283 AGATTAAAGATTTCAG--CATGGCATCCCTGTGTTTATAGGGAACA
1 AGATTAAAGATAACAGATC-TGGCATCCCTGTGTTTATAGGGAACA
* * * *
6052327 CG-TTGAAGATATCAGATCTGGCATCCCTGTGTTTATGGGGAAC-
1 AGATTAAAGATAACAGATCTGGCATCCCTGTGTTTATAGGGAACA
* *
6052370 AGATCAAAGATAGCAGATCT
1 AGATTAAAGATAACAGATCT
6052390 AACCTTCAGA
Statistics
Matches: 215, Mismatches: 54, Indels: 30
0.72 0.18 0.10
Matches are distributed among these distances:
42 1 0.00
43 27 0.13
44 159 0.74
45 28 0.13
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (45 bp):
AGATTAAAGATAACAGATCTGGCATCCCTGTGTTTATAGGGAACA
Found at i:6052425 original size:132 final size:132
Alignment explanation
Indices: 6052068--6052389 Score: 556
Period size: 132 Copynumber: 2.4 Consensus size: 132
6052058 ATGTAGATTA
6052068 AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
1 AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
* *
6052133 CTGTGCTTACAGCGAAGCAGATTGAAGATTTCAGCATGGTATCCCTGTGTTTATAGGGAACAAGT
66 CTGTGCTTACAGCGAAGCAGATTAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGT
6052198 TG
131 TG
6052200 AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
1 AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
*
6052265 CTGTGCTTACAGCGAAGCAGATTAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACACGT
66 CTGTGCTTACAGCGAAGCAGATTAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGT
6052330 TG
131 TG
* * * * *
6052332 AAGATATC-AGATCTGGCATCCCTGTGTTTATGGGGAACAGATCAAAGATAGCAGATCT
1 AAGA-AACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCT
6052390 AACCTTCAGA
Statistics
Matches: 181, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
132 179 0.99
133 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (132 bp):
AAGAAACAAGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAGATCTGACATTC
CTGTGCTTACAGCGAAGCAGATTAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGT
TG
Found at i:6052759 original size:118 final size:119
Alignment explanation
Indices: 6052373--6052970 Score: 1038
Period size: 119 Copynumber: 5.0 Consensus size: 119
6052363 GGGGAACAGA
*
6052373 TCAAAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
*
6052438 TTGTGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
*
6052492 TCAAAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
6052557 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
*
6052611 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
6052676 TTGTGTTTACAA-GAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* *
6052729 TCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * *
6052794 TTGTGTTTATAAGAAACAAATCGAGGACATAGCAGTTTTGACTCTCA-ACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* *
6052847 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * * * *
6052912 TTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
6052966 TCAAA
1 TCAAA
6052971 CAGACTCAAG
Statistics
Matches: 459, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
118 224 0.49
119 235 0.51
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
Found at i:6052796 original size:237 final size:237
Alignment explanation
Indices: 6052373--6052970 Score: 1036
Period size: 237 Copynumber: 2.5 Consensus size: 237
6052363 GGGGAACAGA
*
6052373 TCAAAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* *
6052438 TTGTGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAGATAGC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAAC
6052503 AGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
131 AGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
*
6052568 AGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
196 AGAAACAAATCGAGGACATAGCAGATTTGACTCTCA-ACGTTC
*
6052611 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
*
6052676 TTGTGTTTACAA-GAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAAC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAAC
* *
6052740 AGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTATA
131 AGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
*
6052805 AGAAACAAATCGAGGACATAGCAGTTTTGACTCTCAACGTTC
196 AGAAACAAATCGAGGACATAGCAGATTTGACTCTCAACGTTC
* *
6052847 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * * * *
6052912 TTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
6052971 CAGACTCAAG
Statistics
Matches: 342, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
236 79 0.23
237 188 0.55
238 75 0.22
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (237 bp):
TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAAC
AGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
AGAAACAAATCGAGGACATAGCAGATTTGACTCTCAACGTTC
Found at i:6052999 original size:83 final size:83
Alignment explanation
Indices: 6052894--6053246 Score: 625
Period size: 83 Copynumber: 4.2 Consensus size: 83
6052884 GAAGCAGATC
6052894 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
6052959 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
6052977 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
6053042 AATGTTCTCAAATAGACT
66 AATGTTCTCAAACAGACT
* *
6053060 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
6053125 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
6053143 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
6053208 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
6053227 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
6053247 ACAATCGAAG
Statistics
Matches: 260, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
83 181 0.70
84 79 0.30
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:6053660 original size:17 final size:17
Alignment explanation
Indices: 6053640--6053772 Score: 158
Period size: 17 Copynumber: 7.5 Consensus size: 17
6053630 AATGATATGT
6053640 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
* *
6053657 AATCTTAAATATGATTGC
1 AATCTTAGATATGA-TAC
*
6053675 AGTCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
6053692 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
*
6053710 AATCTTAGCTATGATAC
1 AATCTTAGATATGATAC
*
6053727 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
*
6053745 AATTTTAGATATGATATAC
1 AATCTTAGATATG--ATAC
6053764 AATCTTAGA
1 AATCTTAGA
6053773 AGATATGATT
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
17 43 0.44
18 43 0.44
19 10 0.10
20 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:6053682 original size:35 final size:35
Alignment explanation
Indices: 6053631--6053772 Score: 212
Period size: 35 Copynumber: 4.0 Consensus size: 35
6053621 ATAATCTTCA
* *
6053631 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
6053667 ATGATTGCAGTCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
6053702 ATGATTGCAATCTTAGCTATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
6053737 ATGATTGCAATTTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
6053773 AGATATGATT
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
35 79 0.81
36 5 0.05
37 13 0.13
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:6053686 original size:18 final size:18
Alignment explanation
Indices: 6053640--6053772 Score: 173
Period size: 18 Copynumber: 7.5 Consensus size: 18
6053630 AATGATATGT
6053640 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
6053657 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
*
6053675 AGTCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
6053692 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
*
6053710 AATCTTAGCTATGA-TAC
1 AATCTTAGATATGATTAC
*
6053727 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
*
6053745 AATTTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
6053764 AATCTTAGA
1 AATCTTAGA
6053773 AGATATGATT
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
17 43 0.44
18 45 0.46
19 10 0.10
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:6054092 original size:12 final size:11
Alignment explanation
Indices: 6054077--6054110 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
6054067 TATTTTTAAT
6054077 TTATTATATATA
1 TTATT-TATATA
6054089 TTATTTATTATA
1 TTATTTA-TATA
6054101 TTATTTATAT
1 TTATTTATAT
6054111 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:6054108 original size:16 final size:16
Alignment explanation
Indices: 6054075--6054105 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6054065 CTTATTTTTA
6054075 ATTTATTATATATATT
1 ATTTATTATATATATT
6054091 ATTTATTATAT-TATT
1 ATTTATTATATATATT
6054106 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:6055578 original size:26 final size:27
Alignment explanation
Indices: 6055511--6055590 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
6055501 ATAAATTAAA
*
6055511 AAAATAATATACAAAACAATTTAAAAT
1 AAAATAATATATAAAACAATTTAAAAT
* *
6055538 AAAATAATATATAAATCAATCTAAAAT
1 AAAATAATATATAAAACAATTTAAAAT
* *
6055565 -AACTAATTTATAAAACAATTTAAAAT
1 AAAATAATATATAAAACAATTTAAAAT
6055591 TACATATAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 22 0.48
27 24 0.52
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAATAATATATAAAACAATTTAAAAT
Found at i:6055908 original size:26 final size:26
Alignment explanation
Indices: 6055828--6055908 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
6055818 AAAAATGTAA
* *
6055828 AAACTTAAAATATATAATAATAAAAT
1 AAACTTAAAATAAATAATAATAAAAC
* ** * *
6055854 GATTTTAAAATGAATAATATAAGAAAAC
1 AAACTTAAAATAAAT-A-ATAATAAAAC
6055882 AAACTTAAAATAAATAATAATAAAAC
1 AAACTTAAAATAAATAATAATAAAAC
6055908 A
1 A
6055909 GTCCCTAAAA
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
26 20 0.49
27 2 0.05
28 19 0.46
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.27
Consensus pattern (26 bp):
AAACTTAAAATAAATAATAATAAAAC
Found at i:6056831 original size:18 final size:18
Alignment explanation
Indices: 6056788--6056831 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
6056778 TGTATTTAAA
6056788 AAAATAAATAAAAGCAAAC
1 AAAA-AAATAAAAGCAAAC
*
6056807 AAGAAAATGAAAAG-AAAC
1 AAAAAAAT-AAAAGCAAAC
6056825 AAAAAAA
1 AAAAAAA
6056832 GATCAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.77, C:0.07, G:0.09, T:0.07
Consensus pattern (18 bp):
AAAAAAATAAAAGCAAAC
Found at i:6060026 original size:26 final size:26
Alignment explanation
Indices: 6059993--6060053 Score: 81
Period size: 27 Copynumber: 2.4 Consensus size: 26
6059983 TTTTAAAGTA
*
6059993 AATAATAAAACGA-TTTAAAATGAAT
1 AATAATAAAACGAGTTTAAAATAAAT
*
6060018 AATACATAAAGCGAGTTTAAAATAAAT
1 AATA-ATAAAACGAGTTTAAAATAAAT
6060045 AAT-ATAAAA
1 AATAATAAAA
6060054 GAATTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 9 0.29
26 8 0.26
27 14 0.45
ACGTcount: A:0.61, C:0.05, G:0.08, T:0.26
Consensus pattern (26 bp):
AATAATAAAACGAGTTTAAAATAAAT
Found at i:6060075 original size:25 final size:27
Alignment explanation
Indices: 6060005--6060091 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
6059995 TAATAAAACG
* * * *
6060005 ATTTAAAATGAATAATACATAAAGCGA
1 ATTTAAAATAAATAATATACAAAGCAA
*
6060032 GTTTAAAATAAATAATATA-AAAG-AA
1 ATTTAAAATAAATAATATACAAAGCAA
* ** *
6060057 TTTTAAAATCTATATTATACAAAGCAA
1 ATTTAAAATAAATAATATACAAAGCAA
6060084 ATTTAAAA
1 ATTTAAAA
6060092 AAGGATTTAT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 16 0.33
26 8 0.16
27 25 0.51
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (27 bp):
ATTTAAAATAAATAATATACAAAGCAA
Found at i:6060090 original size:27 final size:25
Alignment explanation
Indices: 6059968--6060091 Score: 76
Period size: 27 Copynumber: 4.9 Consensus size: 25
6059958 TTTGAAATTG
*
6059968 ATAATATATAAA-AAATTTTAAAGTAA
1 ATAATATA-AAAGAAA-TTTAAAATAA
* *
6059994 ATAATA-AAACG--ATTTAAAATGA
1 ATAATATAAAAGAAATTTAAAATAA
* * *
6060016 ATAATACATAAAGCGAGTTTAAAATAA
1 ATAATATA-AAAG-AAATTTAAAATAA
* **
6060043 ATAATATAAAAGAATTTTAAAATCT
1 ATAATATAAAAGAAATTTAAAATAA
*
6060068 ATATTATACAAAGCAAATTTAAAA
1 ATAATATA-AAAG-AAATTTAAAA
6060092 AAGGATTTAT
Statistics
Matches: 77, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
22 14 0.18
23 2 0.03
24 5 0.06
25 17 0.22
26 14 0.18
27 25 0.32
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (25 bp):
ATAATATAAAAGAAATTTAAAATAA
Found at i:6060165 original size:24 final size:24
Alignment explanation
Indices: 6060138--6060195 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
6060128 ATATATATAC
* *
6060138 ATATATAAAAGTGTAAAATAAATA
1 ATATATAAAAATCTAAAATAAATA
*
6060162 ATATATATAAAATCTAAAGTAAATA
1 ATATATA-AAAATCTAAAATAAATA
*
6060187 ACA-ATAAAA
1 ATATATAAAA
6060196 CGATTTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 3 0.10
24 10 0.34
25 16 0.55
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (24 bp):
ATATATAAAAATCTAAAATAAATA
Found at i:6060185 original size:25 final size:26
Alignment explanation
Indices: 6060138--6060187 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
6060128 ATATATATAC
*
6060138 ATATATAAAAGTGTAAAATAAATAAT
1 ATATATAAAAGTCTAAAATAAATAAT
*
6060164 ATATATAAAA-TCTAAAGTAAATAA
1 ATATATAAAAGTCTAAAATAAATAA
6060188 CAATAAAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (26 bp):
ATATATAAAAGTCTAAAATAAATAAT
Found at i:6060288 original size:28 final size:27
Alignment explanation
Indices: 6060226--6060288 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
6060216 AGAGTTTAAC
6060226 ATAAGATATATAAAACAATTTTAAAATA
1 ATAA-ATATATAAAACAATTTTAAAATA
**
6060254 A-ATAATATATAAGTCAATTTTAAAAATA
1 ATA-AATATATAAAACAATTTT-AAAATA
6060282 ATAAATA
1 ATAAATA
6060289 AGAATCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
27 16 0.53
28 13 0.43
29 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (27 bp):
ATAAATATATAAAACAATTTTAAAATA
Found at i:6062309 original size:20 final size:18
Alignment explanation
Indices: 6062280--6062343 Score: 80
Period size: 19 Copynumber: 3.6 Consensus size: 18
6062270 CCTCACTGGT
6062280 ATTTTTATATATATTTTAA
1 ATTTTTATATAT-TTTTAA
6062299 ATTTATTATATATTTTTAA
1 ATTT-TTATATATTTTTAA
6062318 ATTTTTAT-T-TTTTT-A
1 ATTTTTATATATTTTTAA
*
6062333 ATTTTTTTATA
1 ATTTTTATATA
6062344 ATTAGGATCA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
15 8 0.20
16 6 0.15
17 1 0.02
18 4 0.10
19 14 0.34
20 8 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTATATATTTTTAA
Found at i:6062310 original size:18 final size:18
Alignment explanation
Indices: 6062283--6062343 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
6062273 CACTGGTATT
6062283 TTTA-TATATATTTTAAA
1 TTTATTATATATTTTAAA
6062300 TTTATTATATATTTTTAAA
1 TTTATTATATA-TTTTAAA
* *
6062319 TTT-TTAT-TTTTTTAAT
1 TTTATTATATATTTTAAA
*
6062335 TTTTTTATA
1 TTTATTATA
6062344 ATTAGGATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
16 9 0.24
17 9 0.24
18 10 0.26
19 10 0.26
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATTATATATTTTAAA
Found at i:6063129 original size:26 final size:26
Alignment explanation
Indices: 6063092--6063149 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
6063082 TGATACAAAT
6063092 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6063118 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6063144 TGATAA
1 TGATAA
6063150 GAATATCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:6073707 original size:36 final size:37
Alignment explanation
Indices: 6073660--6073737 Score: 131
Period size: 36 Copynumber: 2.1 Consensus size: 37
6073650 TAATTCTTAT
6073660 TAATGTTCCCTTGAAATTGAAAGTG-ACATAAAATGA
1 TAATGTTCCCTTGAAATTGAAAGTGAACATAAAATGA
*
6073696 TAATGTTCCCTTGAAATTGAAAGTGAACGTAAAATGA
1 TAATGTTCCCTTGAAATTGAAAGTGAACATAAAATGA
*
6073733 CAATG
1 TAATG
6073738 GCATTATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 25 0.64
37 14 0.36
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (37 bp):
TAATGTTCCCTTGAAATTGAAAGTGAACATAAAATGA
Found at i:6074355 original size:28 final size:28
Alignment explanation
Indices: 6074315--6074373 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
6074305 AATTAAAAGA
*
6074315 AAGGGTGTCATGTGACGATGCACGTGAC
1 AAGGCTGTCATGTGACGATGCACGTGAC
6074343 AAGGCTGTCATGTGACGATGCACGTGAC
1 AAGGCTGTCATGTGACGATGCACGTGAC
6074371 AAG
1 AAG
6074374 TTAATGTGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.27, C:0.19, G:0.34, T:0.20
Consensus pattern (28 bp):
AAGGCTGTCATGTGACGATGCACGTGAC
Found at i:6075728 original size:105 final size:102
Alignment explanation
Indices: 6075480--6075790 Score: 435
Period size: 105 Copynumber: 3.0 Consensus size: 102
6075470 CAAGAGGAGA
* * * *
6075480 GTGGTGTGAAGTCACATGTTGCCTGGAGGACGGTGAAAGTGAATCAG-TTCGAAAAGATGGTGAG
1 GTGGTGCGAAATCACATGTTGCCTGGAGGACGGTGAAAGTGAATGAGATT-GAAGAGATGGTGAG
*
6075544 GGAGAGCTCGAGGGTGGGTGTGAGGAGGGTTGAGACCAG
65 GGAGAGCGCGAGGGTGGGTGTGAGGAGGGTTGAGACC-G
* * * *
6075583 GTGGTTCGAAATCACATGTTGCCTGGAGGACGGTGGAAGTGAATGAGATTGAAGAGATGGTCAGA
1 GTGGTGCGAAATCACATGTTGCCTGGAGGACGGTGAAAGTGAATGAGATTGAAGAGATGGTGAGG
6075648 GAGAGCGCGAGGGTGGGTGTGTGAGGAGGGTTGAGACCG
66 GAGAGCGCGAGGGT-GG-GTGTGAGGAGGGTTGAGACCG
* * ** *
6075687 GATGGTGCGAAATCACATGTTGCCCGGAGTATAGTGAAAGTGAATGAGATCGAAGAGATGGTGAG
1 G-TGGTGCGAAATCACATGTTGCCTGGAGGACGGTGAAAGTGAATGAGATTGAAGAGATGGTGAG
*
6075752 GGAGAGCGCGAGGGTGGGTGTGAGGAGGTTTGAGACCG
65 GGAGAGCGCGAGGGTGGGTGTGAGGAGGGTTGAGACCG
6075790 G
1 G
6075791 GTGCGCGAAT
Statistics
Matches: 185, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
103 88 0.48
104 8 0.04
105 89 0.48
ACGTcount: A:0.26, C:0.11, G:0.44, T:0.20
Consensus pattern (102 bp):
GTGGTGCGAAATCACATGTTGCCTGGAGGACGGTGAAAGTGAATGAGATTGAAGAGATGGTGAGG
GAGAGCGCGAGGGTGGGTGTGAGGAGGGTTGAGACCG
Found at i:6076015 original size:25 final size:23
Alignment explanation
Indices: 6075965--6076011 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
6075955 CGTAAGGGTG
6075965 TTAACGGTGTTAGATAATATATA
1 TTAACGGTGTTAGATAATATATA
*
6075988 TTAACGGTGTTAGATAACATATA
1 TTAACGGTGTTAGATAATATATA
6076011 T
1 T
6076012 ATTACTCACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.38
Consensus pattern (23 bp):
TTAACGGTGTTAGATAATATATA
Found at i:6076145 original size:25 final size:25
Alignment explanation
Indices: 6076110--6076162 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
6076100 TGTAAGGGTG
*
6076110 TTAACGGTGTTAAATAATATATATA
1 TTAACGATGTTAAATAATATATATA
*
6076135 TTAACGATGTTAGATAATATATATA
1 TTAACGATGTTAAATAATATATATA
6076160 TTA
1 TTA
6076163 TTCGATATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (25 bp):
TTAACGATGTTAAATAATATATATA
Found at i:6076221 original size:147 final size:147
Alignment explanation
Indices: 6075899--6076388 Score: 631
Period size: 147 Copynumber: 3.4 Consensus size: 147
6075889 AGGTGATGAG
* *
6075899 GGTGAAAGTAGAGACTTGTAGTAGCGGTAAAATGGGGTGGAGGTGGTGAGAGAGAGC--------
1 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
* * * *
6075956 GTAAGGGTGTTAACGGTGTTAGAT-A-ATATATATTAACGGTGTTAGATAACATATATATTACTC
66 GTAAGGGTGTTAACGGTGTTAAATAATATATATATTAACGATGTTAGATAATATATATATTATTC
6076019 ACTATGATGTTTAACAT
131 ACTATGATGTTTAACAT
* * *
6076036 GGTGAAAGTAGAGACTTGTAGCAGCGGTAAAATGGGGTGGAGGTGGTGAGAGAGAGCGTAAGGGT
1 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
6076101 GTAAGGGTGTTAACGGTGTTAAATAATATATATATTAACGATGTTAGATAATATATATATTATTC
66 GTAAGGGTGTTAACGGTGTTAAATAATATATATATTAACGATGTTAGATAATATATATATTATTC
*
6076166 GA-TATGATGTTTAACTT
131 -ACTATGATGTTTAACAT
*
6076183 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGAGT
1 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
* ** *
6076248 ATTAACAGTGTT-A----GAT-AATATATATATATATTAAC-AGTGTTAGATAATATATATATTA
66 -GTAAGGGTGTTAACGGTGTTAAATA-ATATATATATTAACGA-TGTTAGATAATATATATATTA
6076306 CTT-ACTATGATGTTTAACAT
128 -TTCACTATGATGTTTAACAT
* ***
6076326 GATGAAAGTAGAGACTTGTAGTAGCGATAAAATAAAGTGAAGGTGGTGAGAGAGAGCGTAAGG
1 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGG
6076389 TGCTAACAGT
Statistics
Matches: 317, Mismatches: 20, Indels: 26
0.87 0.06 0.07
Matches are distributed among these distances:
137 56 0.18
142 6 0.02
143 109 0.34
144 2 0.01
145 23 0.07
146 1 0.00
147 111 0.35
148 9 0.03
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (147 bp):
GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
GTAAGGGTGTTAACGGTGTTAAATAATATATATATTAACGATGTTAGATAATATATATATTATTC
ACTATGATGTTTAACAT
Found at i:6076289 original size:29 final size:29
Alignment explanation
Indices: 6076247--6076303 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
6076237 AGCGTAAGAG
6076247 TATTAACAGTGTTAGATAATATATATATA
1 TATTAACAGTGTTAGATAATATATATATA
6076276 TATTAACAGTGTTAGATAATATATATAT
1 TATTAACAGTGTTAGATAATATATATAT
6076304 TACTTACTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.42
Consensus pattern (29 bp):
TATTAACAGTGTTAGATAATATATATATA
Found at i:6076342 original size:143 final size:141
Alignment explanation
Indices: 6075899--6076407 Score: 667
Period size: 143 Copynumber: 3.6 Consensus size: 141
6075889 AGGTGATGAG
* *
6075899 GGTGAAAGTAGAGACTTGTAGTAGCGGTAAAATGGGGTGGAGGTGGTGAGAGAGAGCGTAAGGGT
1 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
* * *
6075964 GTTAACGGTGTTAG----ATA-ATATATATTAACGGTGTTAGATAACATATATATTACTCACTAT
66 GTTAACAGTGTTAGATAAATATATATATATTAAC-GTGTTAGATAATATATATATTACTTACTAT
6076024 GATGTTTAACAT
130 GATGTTTAACAT
* * *
6076036 GGTGAAAGTAGAGACTTGTAGCAGCGGTAAAATGGGGTGGAGGTGGTGAGAGAGAGCGTAAGGGT
1 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
** *
6076101 G-TAAGGGTGTTAACGGTGTTAAATAATATATATATTAACGATGTTAGATAATATATATATTA-T
66 GTTAACAGTGTT-A----GATAAAT-ATATATATATTAACG-TGTTAGATAATATATATATTACT
*
6076164 T-CGATATGATGTTTAACTT
124 TAC--TATGATGTTTAACAT
*
6076183 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGAGT
1 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
*
6076248 ATTAACAGTGTTAGATAATATATATATATATTAACAGTGTTAGATAATATATATATTACTTACTA
66 GTTAACAGTGTTAGATAA-ATATATATATATTAAC-GTGTTAGATAATATATATATTACTTACTA
6076313 TGATGTTTAACAT
129 TGATGTTTAACAT
* ***
6076326 GATGAAAGTAGAGACTTGTAGTAGCGATAAAATAAAGTGAAGGTGGTGAGAGAGAGCGTAA-GGT
1 GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
* *
6076390 GCTAACAGTGTTAAATAA
66 GTTAACAGTGTTAGATAA
6076408 TAAATATTAC
Statistics
Matches: 331, Mismatches: 22, Indels: 33
0.86 0.06 0.09
Matches are distributed among these distances:
136 9 0.03
137 66 0.20
141 1 0.00
142 17 0.05
143 110 0.33
144 5 0.02
145 4 0.01
146 3 0.01
147 108 0.33
148 8 0.02
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.30
Consensus pattern (141 bp):
GGTGAAAGTAGAGACTTGTAGTAGCGATAAAATGGGGTGAAGGTGGTGAGAGAGAGCGTAAGGGT
GTTAACAGTGTTAGATAAATATATATATATTAACGTGTTAGATAATATATATATTACTTACTATG
ATGTTTAACAT
Found at i:6081627 original size:13 final size:13
Alignment explanation
Indices: 6081609--6081638 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6081599 TAAGTTCGCA
6081609 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
*
6081622 AAAAAAAGAAAAG
1 AAAAAAAAAAAAG
6081635 AAAA
1 AAAA
6081639 GAACAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:6081638 original size:18 final size:16
Alignment explanation
Indices: 6081608--6081641 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
6081598 GTAAGTTCGC
6081608 AAAAAAAAAAAAAGAA
1 AAAAAAAAAAAAAGAA
6081624 AAAAAGAAAAGAAAAGAA
1 AAAAA-AAAA-AAAAGAA
6081642 CAATGAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAGAA
Found at i:6085586 original size:10 final size:10
Alignment explanation
Indices: 6085571--6085613 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
6085561 CCTAATTCTA
6085571 AAAAATATAT
1 AAAAATATAT
*
6085581 AAAAATACAT
1 AAAAATATAT
* *
6085591 AAATAT-TTT
1 AAAAATATAT
6085600 AAAAATATAT
1 AAAAATATAT
6085610 AAAA
1 AAAA
6085614 TACCCCAGTG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
9 6 0.23
10 20 0.77
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (10 bp):
AAAAATATAT
Found at i:6087325 original size:27 final size:28
Alignment explanation
Indices: 6087282--6087334 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
6087272 GGGAAGAAGT
* *
6087282 TTTTTTTTAACACAAA-TGCTGAAATGA
1 TTTTTTTTAAAAAAAATTGCTGAAATGA
*
6087309 TTTTTTTTAAAAAAAATTGCTTAAAT
1 TTTTTTTTAAAAAAAATTGCTGAAAT
6087335 AGAGGACCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.45
Consensus pattern (28 bp):
TTTTTTTTAAAAAAAATTGCTGAAATGA
Found at i:6087472 original size:3 final size:3
Alignment explanation
Indices: 6087464--6087732 Score: 99
Period size: 3 Copynumber: 88.3 Consensus size: 3
6087454 CAGTAATTAA
* * * * *
6087464 AAT AAT AAT AAT AGAA AAT AAGG AAT AAT AAT AAT AAC AAC CAT -AT
1 AAT AAT AAT AAT A-AT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
6087510 TAT AAAT AAT AAAT AAA AAC AAT AAT CAT AAT AAT AA- AAT -AT AAGT
1 AAT -AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* ** * * * * *
6087556 AAT AGT AA- AGAT AAT GGT AAT GAC GAT AAT AAAT AAT AGT AGT AGAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-AT
* *
6087603 AAT GAA- AAT AAT AAT AGT AAT AAT AAT AAT GAA- AAT AGT GAA- AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT -AAT AAT
* * ** *
6087648 AAT AAT AGT AAT -AT AAT AGT AAT AAT GGT AAT GAT AAT AA- ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * *
6087692 AAGT AAC AGT AA- AAT AAT AAT AAT AAT AAGA AAT AAT AAT A
1 AA-T AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT A
6087733 TATTAAATTA
Statistics
Matches: 197, Mismatches: 45, Indels: 48
0.68 0.16 0.17
Matches are distributed among these distances:
2 18 0.09
3 150 0.76
4 29 0.15
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:6087542 original size:25 final size:24
Alignment explanation
Indices: 6087488--6087547 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
6087478 AAAATAAGGA
* * *
6087488 ATAATAAT-AATAACAACCATATT
1 ATAATAATAAATAAAAACAATATC
6087511 ATAAATAATAAATAAAAACAATAATC
1 AT-AATAATAAATAAAAACAAT-ATC
6087537 ATAATAATAAA
1 ATAATAATAAA
6087548 ATATAAGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 2 0.06
24 6 0.19
25 19 0.61
26 4 0.13
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (24 bp):
ATAATAATAAATAAAAACAATATC
Found at i:6087611 original size:22 final size:21
Alignment explanation
Indices: 6087586--6087732 Score: 79
Period size: 19 Copynumber: 7.5 Consensus size: 21
6087576 TGACGATAAT
*
6087586 AAATAATAGTAGTAGATAATGA
1 AAATAATAATAGTA-ATAATGA
6087608 AAATAATAATAGTAATAAT--
1 AAATAATAATAGTAATAATGA
* *
6087627 -AATAATGA-A--AATAGTGA
1 AAATAATAATAGTAATAATGA
6087644 AAATAATAATAGTAAT-AT-A
1 AAATAATAATAGTAATAATGA
* * *
6087663 ATAGTAATAATGGTAATGAT-A
1 A-AATAATAATAGTAATAATGA
* * *
6087684 ATA-AAT-ATAAGTAACAGT-A
1 AAATAATAAT-AGTAATAATGA
*
6087703 AAATAATAATAATAATAA-G-
1 AAATAATAATAGTAATAATGA
6087722 AAATAATAATA
1 AAATAATAATA
6087733 TATTAAATTA
Statistics
Matches: 96, Mismatches: 17, Indels: 27
0.69 0.12 0.19
Matches are distributed among these distances:
15 5 0.05
17 1 0.01
18 16 0.17
19 25 0.26
20 22 0.23
21 14 0.15
22 13 0.14
ACGTcount: A:0.60, C:0.01, G:0.11, T:0.29
Consensus pattern (21 bp):
AAATAATAATAGTAATAATGA
Found at i:6089212 original size:41 final size:41
Alignment explanation
Indices: 6089152--6089390 Score: 307
Period size: 41 Copynumber: 5.7 Consensus size: 41
6089142 TTCAACTTCA
* * * * * *
6089152 ATCTGTTCCACTGCCACTTTAGAGAGATGAGATTTGTTTTG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
* * * ** *
6089193 ATCTGCTCTACTGTAACTTTAGGGAGATAAGACTTGCTATCTTC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTG-T-T-TTG
*
6089237 AGTCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
1 A-TCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
*
6089279 ATCTGCTCTACTACAACTTCAGAGAGATAAGGTTTGTTTTG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
*
6089320 ATCTACTCTACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
6089361 ATCTGCTCTACTGCAACTTCAGAGAGATAA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAA
6089391 AATCTGTGAT
Statistics
Matches: 174, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
41 135 0.78
42 4 0.02
43 2 0.01
44 4 0.02
45 29 0.17
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (41 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
Found at i:6089256 original size:45 final size:41
Alignment explanation
Indices: 6089152--6089493 Score: 261
Period size: 41 Copynumber: 7.9 Consensus size: 41
6089142 TTCAACTTCA
* * * * *
6089152 ATCTGTTCCACTGCCACTTTAGAGAGATGAGATTTGTTTTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTC
* * * * *
6089193 ATCTGCTCTACTGTAACTTTAGGGAGATAAGACTTGCTATCTTC
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-T-T-TTC
* *
6089237 AGTCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
1 A-TCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTC
* * * *
6089279 ATCTGCTCTACTACAACTTCAGAGAGATAAGGTTTGTTTTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTC
* * * *
6089320 ATCTACTCTACTGCAACTTCAGAGAGATAAGGTTTGTTTTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTC
* *
6089361 ATCTGCTCTACTGCAACTTCAGAGAGATAAAATCTGTGATTTATATCTTC
1 ATCTGCTCCACTGCAACTTCAGAGAGAT--AA-----GATTTGT-T-TTC
* * * *
6089411 AATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTC
1 -ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-T-T-TTC
* * *
6089456 AGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGT
1 A-TCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGT
6089494 GACTTCAATT
Statistics
Matches: 251, Mismatches: 34, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
41 133 0.53
42 4 0.02
43 4 0.02
44 11 0.04
45 66 0.26
48 5 0.02
49 3 0.01
50 2 0.01
51 23 0.09
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (41 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTTC
Found at i:6089623 original size:68 final size:68
Alignment explanation
Indices: 6089507--6089709 Score: 280
Period size: 68 Copynumber: 3.0 Consensus size: 68
6089497 TTCAATTTAC
* * *
6089507 TCCGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCGAGCCGCTCCAACGCCATTTCAGGGAGAAG
1 TCCGCTGAAACTTCAAGGAGATATGATGTGGCTTCGAGCCTCTCCAACGCCATTTCAGGGAGAAG
*
6089572 ATA
66 AGA
* * * *
6089575 TCCGCTGAAACTTCAAGGAGATTTGCTGTGGCTTCTAGCCTCTGCAACGCCATTTCAGGGAGAAG
1 TCCGCTGAAACTTCAAGGAGATATGATGTGGCTTCGAGCCTCTCCAACGCCATTTCAGGGAGAAG
6089640 AGA
66 AGA
* ** *
6089643 TCCGCTGAAACTTCAAGGAGATACGAATGGTGGCTTCGAGCCTCTCCAGTGTCATTTCAGGGAGA
1 TCCGCTGAAACTTCAAGGAGATATG-AT-GTGGCTTCGAGCCTCTCCAACGCCATTTCAGGGAGA
6089708 AG
64 AG
6089710 GGATTTATAG
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
68 85 0.71
69 1 0.01
70 33 0.28
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (68 bp):
TCCGCTGAAACTTCAAGGAGATATGATGTGGCTTCGAGCCTCTCCAACGCCATTTCAGGGAGAAG
AGA
Found at i:6089787 original size:43 final size:43
Alignment explanation
Indices: 6089726--6089962 Score: 151
Period size: 43 Copynumber: 5.5 Consensus size: 43
6089716 ATAGCTTCTA
* *
6089726 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGTGATAAGATCTATAAATTTAGC
* ** * *** *
6089769 CTGTTACCCTACTGCTTAGGG-GTTTAAGGCCCATCGCCTTT-GAT
1 CTGTTACCCTACTGCTTAGGGTG-ATAAGATCTAT-AAATTTAG-C
* * * *
6089813 CTGTTTCCCTACTGCTTAGGATGATAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGTGATAAGATCTATAAATTTAGC
* ** * *** *
6089856 CTGTTACCCTACTGCTTAGGG-GTTTAAGGCCCATTGCCTTT-GAT
1 CTGTTACCCTACTGCTTAGGGTG-ATAAGATCTA-TAAATTTAG-C
* *
6089900 CTGTT-TCCTACTGCTTAGGGTGATAAGATCTATAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGTGATAAGATCTATAAATTTAGC
* *
6089942 CTGTTACCCAACTGTTTAGGG
1 CTGTTACCCTACTGCTTAGGG
6089963 GATTAAGGCC
Statistics
Matches: 136, Mismatches: 47, Indels: 22
0.66 0.23 0.11
Matches are distributed among these distances:
42 10 0.07
43 87 0.64
44 38 0.28
45 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGTGATAAGATCTATAAATTTAGC
Found at i:6089969 original size:86 final size:87
Alignment explanation
Indices: 6089726--6090065 Score: 504
Period size: 87 Copynumber: 3.9 Consensus size: 87
6089716 ATAGCTTCTA
* *
6089726 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
*
6089791 TTTAAGGCCCATCGCCTTTGAT
66 TTTAAGGCCCATTGCCTTTGAT
* *
6089813 CTGTTTCCCTACTGCTTAGGATGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
6089878 TTTAAGGCCCATTGCCTTTGAT
66 TTTAAGGCCCATTGCCTTTGAT
* *
6089900 CTGTTT-CCTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCAACTGTTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
* * *
6089964 ATTAAGGCCCATTGTCTTCGAT
66 TTTAAGGCCCATTGCCTTTGAT
* * * * *
6089986 CTG-CTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGCCTGTTACCCTACTACTTAGG
1 CTGTTTCC-CTACTGCTTAGGGTGATAAGATCTATAA-ATTCAGCCTGTTACCCTACTGCTTAGG
*
6090050 GGGTTAAGGCCCATTG
64 GGTTTAAGGCCCATTG
6090066 TTGAAACCAT
Statistics
Matches: 232, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
85 1 0.00
86 77 0.33
87 116 0.50
88 38 0.16
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (87 bp):
CTGTTTCCCTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGG
TTTAAGGCCCATTGCCTTTGAT
Found at i:6090042 original size:44 final size:43
Alignment explanation
Indices: 6089726--6090051 Score: 148
Period size: 43 Copynumber: 7.5 Consensus size: 43
6089716 ATAGCTTCTA
* *
6089726 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAAT-TT-AGC
1 CTGTTACCCTACTGCTTAGGG-GATAAGATCTAT-AATCTTCAGC
* ** * *** * *
6089769 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTT-TGAT
1 CTGTTACCCTACTGCTTAGGGG-ATAAGATCTATAATCTTCAG-C
* * * *
6089813 CTGTTTCCCTACTGCTTAGGATGATAAGATCTGTAA-ATTCAGC
1 CTGTTACCCTACTGCTTAGG-GGATAAGATCTATAATCTTCAGC
* ** * *** * *
6089856 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGCCTT-TGAT
1 CTGTTACCCTACTGCTTAGGGG-ATAAGATCTATAATCTTCAG-C
* *
6089900 CTGTT-TCCTACTGCTTAGGGTGATAAGATCTATAA-ATTCAGC
1 CTGTTACCCTACTGCTTAGGG-GATAAGATCTATAATCTTCAGC
* * ** * ** *
6089942 CTGTTACCCAACTGTTTAGGGGATTAAGGCCCATTGTCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGA-TAAGATCTATAATCTTCAG-C
* *
6089986 CTGCT-CCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAGC
1 CTGTTACC-CTACTGCTTAGGG-GATAAGATCTATAATCTTCAGC
*
6090030 CTGTTACCCTACTACTTAGGGG
1 CTGTTACCCTACTGCTTAGGGG
6090052 GTTAAGGCCC
Statistics
Matches: 198, Mismatches: 67, Indels: 36
0.66 0.22 0.12
Matches are distributed among these distances:
42 11 0.06
43 102 0.52
44 79 0.40
45 6 0.03
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGATAAGATCTATAATCTTCAGC
Found at i:6091289 original size:7 final size:7
Alignment explanation
Indices: 6091277--6091301 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6091267 GGAAACTTAC
6091277 AATATAT
1 AATATAT
6091284 AATATAT
1 AATATAT
6091291 AATATAT
1 AATATAT
6091298 AATA
1 AATA
6091302 CTTTGAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AATATAT
Found at i:6098065 original size:7 final size:7
Alignment explanation
Indices: 6098049--6098122 Score: 72
Period size: 7 Copynumber: 11.6 Consensus size: 7
6098039 CTTCTATTTC
6098049 AAAAAG-
1 AAAAAGA
6098055 AAAAAG-
1 AAAAAGA
6098061 -AAAA-A
1 AAAAAGA
6098066 AAAAAGA
1 AAAAAGA
6098073 AAAAA-A
1 AAAAAGA
*
6098079 GAAAAGA
1 AAAAAGA
6098086 AAAAAGA
1 AAAAAGA
6098093 AAAAAG-
1 AAAAAGA
6098099 AAAAA-A
1 AAAAAGA
* *
6098105 AGAAAGG
1 AAAAAGA
6098112 AAAAAGA
1 AAAAAGA
6098119 AAAA
1 AAAA
6098123 TGGAGAGGCC
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.07
6 24 0.43
7 28 0.50
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:6098075 original size:8 final size:8
Alignment explanation
Indices: 6098049--6098109 Score: 69
Period size: 8 Copynumber: 8.1 Consensus size: 8
6098039 CTTCTATTTC
6098049 AAAAAGAA
1 AAAAAGAA
*
6098057 AAAGAAAAA
1 AAA-AAGAA
6098066 AAAAAGAA
1 AAAAAGAA
6098074 AAAAAG--
1 AAAAAGAA
6098080 -AAAAG-A
1 AAAAAGAA
6098086 AAAAAG-A
1 AAAAAGAA
6098093 AAAAAGAA
1 AAAAAGAA
6098101 AAAAAGAA
1 AAAAAGAA
6098109 A
1 A
6098110 GGAAAAAGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
5 5 0.11
7 12 0.26
8 23 0.49
9 7 0.15
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:6098079 original size:19 final size:18
Alignment explanation
Indices: 6098049--6098122 Score: 105
Period size: 19 Copynumber: 4.0 Consensus size: 18
6098039 CTTCTATTTC
6098049 AAAAAG-AAAAAGAAAAA
1 AAAAAGAAAAAAGAAAAA
6098066 AAAAAGAAAAAAAGAAAAGA
1 AAAAAG-AAAAAAGAAAA-A
6098086 AAAAAGAAAAAAGAAAAA
1 AAAAAGAAAAAAGAAAAA
*
6098104 AAGAAAGGAAAAAGAAAAA
1 AA-AAAGAAAAAAGAAAAA
6098123 TGGAGAGGCC
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
17 6 0.12
18 3 0.06
19 36 0.69
20 7 0.13
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAAGAAAAA
Found at i:6098103 original size:27 final size:27
Alignment explanation
Indices: 6098049--6098122 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
6098039 CTTCTATTTC
*
6098049 AAAAAGAAAA-AGAAAA-AAAAAAGAA
1 AAAAAGAAAAGAAAAAAGAAAAAAGAA
6098074 AAAAAGAAAAGAAAAAAGAAAAAAGAA
1 AAAAAGAAAAGAAAAAAGAAAAAAGAA
*
6098101 AAAAAG-AAAGGAAAAAGAAAAA
1 AAAAAGAAAAGAAAAAAGAAAAA
6098123 TGGAGAGGCC
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
25 10 0.22
26 20 0.44
27 15 0.33
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (27 bp):
AAAAAGAAAAGAAAAAAGAAAAAAGAA
Found at i:6098122 original size:1 final size:1
Alignment explanation
Indices: 6098049--6098105 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
6098039 CTTCTATTTC
* * * * * * *
6098049 AAAAAGAAAAAGAAAAAAAAAAGAAAAAAAGAAAAGAAAAAAGAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6098106 GAAAGGAAAA
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (1 bp):
A
Found at i:6099172 original size:44 final size:44
Alignment explanation
Indices: 6099028--6099207 Score: 125
Period size: 44 Copynumber: 4.1 Consensus size: 44
6099018 CAAAGAAATA
* * * **
6099028 AGATTTGGCATCCCTGTGTTTATAGAAAACAGATCGAAGATAGC
1 AGATTTGGCATCCCAGTATTCATAGGGAACAGATCGAAGATAGC
* * ** * * * * **
6099072 AGATCTGACATTTCTGTGCTT-ATAGCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCAGT-ATTCATAGGGAA-CAGATCGAAGATAGC
* *
6099117 AGCA--TGGCATCCCTGTATTCATAGGGAAC-GAGTTGAAGATAGC
1 AG-ATTTGGCATCCCAGTATTCATAGGGAACAGA-TCGAAGATAGC
* *
6099160 AGATTTGGCATCCCAGTATTTATAGGGAACAGATCGATGATAGC
1 AGATTTGGCATCCCAGTATTCATAGGGAACAGATCGAAGATAGC
6099204 AGAT
1 AGAT
6099208 CTAACCTTCA
Statistics
Matches: 107, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
42 3 0.03
43 14 0.13
44 71 0.66
45 18 0.17
46 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCAGTATTCATAGGGAACAGATCGAAGATAGC
Found at i:6099342 original size:83 final size:83
Alignment explanation
Indices: 6099241--6100290 Score: 1756
Period size: 83 Copynumber: 12.7 Consensus size: 83
6099231 AAGTAGATCT
* * *
6099241 AAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTTAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
6099306 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
*
6099324 AAGATGGTTTGGCGTCCTTGTGCTTATAAGGAACAAATCGAGGACATAGCAGATT--A----CAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
6099383 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
* ** *
6099401 AAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAGCCGAGGACATAGCAGATTAGACTCTCGG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
6099466 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
6099484 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
*
6099549 ATGTTCTCAAATAGACTC
66 ATGTTCTCAAACAGACTC
* *
6099567 AAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCAGATTAGACTCTCAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
*
6099632 ATGTTCTCAAATAGACTC
66 ATGTTCTCAAACAGACTC
* * * * *
6099650 AAGATGATTTGGCATCCTTGTGTTTACAAGGACCAAATCGAGGACATAGTAGATTAGACTCTC-G
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
6099714 AATGTTCTCAAACAGACTC
66 -ATGTTCTCAAACAGACTC
6099733 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
6099798 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
*
6099816 AAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTC-G
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
6099880 AATGTTCTCAAACAGACTC
66 -ATGTTCTCAAACAGACTC
*
6099899 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCAAGGACATAGCAGATTAGACTCTCAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
*
6099964 ATATTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
* *
6099982 AAGATGGTTTAGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAACAGATTAGACTCTCAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
*
6100047 ATGTTCTCAAACAAACTC
66 ATGTTCTCAAACAGACTC
* * *
6100065 AAGATGGTTTGGCATCCTTGTGCTTATAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
6100130 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
* * *
6100148 AAGATGGTTTGGCGTCCTTGTGCTTATAAGGAATAAATCGAGGACATAGTAGATTAGACTCTCAG
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
6100213 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
*
6100231 AAGATGGTTTGGTGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACT
1 AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACT
6100291 TGTAATGCCC
Statistics
Matches: 907, Mismatches: 50, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
77 71 0.08
79 1 0.00
81 1 0.00
82 2 0.00
83 830 0.92
84 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (83 bp):
AAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCAG
ATGTTCTCAAACAGACTC
Found at i:6100660 original size:26 final size:26
Alignment explanation
Indices: 6100624--6100733 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
6100614 TGATACAAAT
6100624 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
6100650 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6100676 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
6100702 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
6100728 TGATAA
1 TGATAA
6100734 GAATTCATGT
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:6103523 original size:83 final size:83
Alignment explanation
Indices: 6103384--6103781 Score: 697
Period size: 83 Copynumber: 4.8 Consensus size: 83
6103374 GGGTGCTACA
** * *
6103384 AGACTCTTGGATGTTCTCAAACAGACTCAAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAA
1 AGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA
6103449 TCGAGGACATAGCAGATT
66 TCGAGGACATAGCAGATT
* *
6103467 AGACTCTCAGATGTTCTCAAACAGACCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAA
1 AGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA
*
6103532 TCGAAGACATAGCAGATT
66 TCGAGGACATAGCAGATT
6103550 AGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA
1 AGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA
6103615 TCGAGGACATAGCAGATT
66 TCGAGGACATAGCAGATT
* * *
6103633 TGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAA
1 AGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA
6103698 TCGAGGACATAGCAGATT
66 TCGAGGACATAGCAGATT
*
6103716 TGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA
1 AGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA
6103781 T
66 T
6103782 TGAAACATAG
Statistics
Matches: 302, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 302 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (83 bp):
AGACTCTCAGATGTTCTCAAACAGACTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAA
TCGAGGACATAGCAGATT
Found at i:6104650 original size:18 final size:18
Alignment explanation
Indices: 6104574--6104678 Score: 129
Period size: 20 Copynumber: 5.5 Consensus size: 18
6104564 AACGATATGT
6104574 AATCTTAGATATGATATGC
1 AATCTTAGATATGAT-TGC
*
6104593 AATCTTAGATCTAAGATTGC
1 AATCTTAGA--TATGATTGC
*
6104613 AATCTTAGATCTAAGATTGC
1 AATCTTAGA--TATGATTGC
6104633 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
*
6104651 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TGC
6104670 AATCTTAGA
1 AATCTTAGA
6104679 AGATATGATT
Statistics
Matches: 80, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
18 23 0.29
19 20 0.25
20 32 0.40
21 5 0.06
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (18 bp):
AATCTTAGATATGATTGC
Found at i:6104657 original size:38 final size:39
Alignment explanation
Indices: 6104574--6104678 Score: 128
Period size: 38 Copynumber: 2.7 Consensus size: 39
6104564 AACGATATGT
*
6104574 AATCTTAGA-TATGATATGCAATCTTAGATCTAAGATTGC
1 AATCTTAGATTAAGATATGCAATCTTAGA-CTAAGATTGC
*
6104613 AATCTTAGATCTAAGAT-TGCAATCTTAGA-TATGATTGC
1 AATCTTAGAT-TAAGATATGCAATCTTAGACTAAGATTGC
* *
6104651 AATCTTAGA-TATGATATACAATCTTAGA
1 AATCTTAGATTAAGATATGCAATCTTAGA
6104679 AGATATGATT
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
36 5 0.08
37 11 0.19
38 17 0.29
39 9 0.15
40 12 0.20
41 5 0.08
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (39 bp):
AATCTTAGATTAAGATATGCAATCTTAGACTAAGATTGC
Found at i:6105207 original size:15 final size:16
Alignment explanation
Indices: 6105157--6105222 Score: 73
Period size: 16 Copynumber: 3.9 Consensus size: 16
6105147 TCTAAACCAA
6105157 TATATAATATATTTTT
1 TATATAATATATTTTT
6105173 TATATAAT-TATTATTCT
1 TATATAATATATT-TT-T
6105190 TATA-AATATATTTTT
1 TATATAATATATTTTT
6105205 TATTATATATTATATTTT
1 TA-TATA-A-TATATTTT
6105223 AAATTTATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
15 7 0.16
16 17 0.40
17 10 0.23
18 1 0.02
19 8 0.19
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATAATATATTTTT
Found at i:6105247 original size:26 final size:26
Alignment explanation
Indices: 6105199--6105248 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
6105189 TTATAAATAT
* * * *
6105199 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
6105225 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
6105249 TTATATGCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:6106476 original size:7 final size:7
Alignment explanation
Indices: 6106464--6106502 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
6106454 GGAAACTTAC
6106464 AATATAT
1 AATATAT
6106471 AATATAT
1 AATATAT
6106478 AATATAT
1 AATATAT
6106485 AATATAT
1 AATATAT
6106492 AATATAT
1 AATATAT
6106499 AATA
1 AATA
6106503 CTTTGAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AATATAT
Found at i:6106741 original size:3 final size:3
Alignment explanation
Indices: 6106735--6106763 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6106725 AAAAAGATAG
6106735 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
6106764 TGTGAAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:6106882 original size:24 final size:26
Alignment explanation
Indices: 6106855--6106906 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
6106845 AAACAATTTG
6106855 AGAA-GAATACTAAATAAA-AGTTTA
1 AGAATGAATACTAAATAAAGAGTTTA
*
6106879 AGAATGAATACTATATAAAGTAGTTTA
1 AGAATGAATACTAAATAAAG-AGTTTA
6106906 A
1 A
6106907 ACTAAATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 4 0.17
25 13 0.54
27 7 0.29
ACGTcount: A:0.54, C:0.04, G:0.13, T:0.29
Consensus pattern (26 bp):
AGAATGAATACTAAATAAAGAGTTTA
Found at i:6123462 original size:3 final size:3
Alignment explanation
Indices: 6123456--6123500 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
6123446 TATACGTTTG
*
6123456 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ACTT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT AT
6123501 CGTATTTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:6123658 original size:3 final size:3
Alignment explanation
Indices: 6123650--6123704 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
6123640 TTGTTGCCCC
6123650 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6123698 TAT TAT T
1 TAT TAT T
6123705 GTCATTATTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:6125180 original size:2 final size:2
Alignment explanation
Indices: 6125175--6125204 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
6125165 GCAAAAAAAG
*
6125175 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6125205 TATGAAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6129485 original size:11 final size:11
Alignment explanation
Indices: 6129469--6129498 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
6129459 TAACATTAAG
6129469 AATATATATAT
1 AATATATATAT
*
6129480 AATATAAATAT
1 AATATATATAT
6129491 AATATATA
1 AATATATA
6129499 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:6129957 original size:13 final size:13
Alignment explanation
Indices: 6129914--6129963 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
6129904 AAAAATGTAA
6129914 TTTTT-TTATATT
1 TTTTTATTATATT
* *
6129926 TGTTTTGTATATATA
1 T-TTTTAT-TATATT
6129941 TTTTTATTATATT
1 TTTTTATTATATT
6129954 TTTTTATTAT
1 TTTTTATTAT
6129964 GATGTATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 1 0.03
13 19 0.59
14 6 0.19
15 6 0.19
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (13 bp):
TTTTTATTATATT
Found at i:6130012 original size:6 final size:6
Alignment explanation
Indices: 6130003--6130037 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
6129993 AAAAAGGAAA
*
6130003 AAAAAT AAAAAAT AAAAAT AAAAAT AAGAAT AAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAA
6130038 TAATAAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:6130049 original size:18 final size:16
Alignment explanation
Indices: 6130017--6130055 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
6130007 ATAAAAAATA
*
6130017 AAAATAAAAATAAGAAT
1 AAAATAAAAAGAAG-AT
6130034 AAAATAATAAAGAAGAT
1 AAAATAA-AAAGAAGAT
6130051 AAAAT
1 AAAAT
6130056 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (16 bp):
AAAATAAAAAGAAGAT
Found at i:6130926 original size:5 final size:5
Alignment explanation
Indices: 6130916--6130944 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
6130906 ATATTTTAAG
6130916 TAATT TAATT TAATT TAATT TAATT TAAT
1 TAATT TAATT TAATT TAATT TAATT TAAT
6130945 AAAAAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TAATT
Found at i:6131004 original size:9 final size:8
Alignment explanation
Indices: 6130979--6131012 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
6130969 AGTTAAAATT
6130979 AAAATTAA
1 AAAATTAA
6130987 AAAATTAA
1 AAAATTAA
6130995 AAAA-TATA
1 AAAATTA-A
6131003 AAAATTAA
1 AAAATTAA
6131011 AA
1 AA
6131013 TGAATCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 2 0.08
8 20 0.83
9 2 0.08
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATTAA
Found at i:6131005 original size:16 final size:15
Alignment explanation
Indices: 6130973--6131012 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
6130963 CTGTATAGTT
*
6130973 AAAATT-AAAATTAA
1 AAAATTAAAAAATAA
6130987 AAAATTAAAAAATATA
1 AAAATTAAAAAATA-A
6131003 AAAATTAAAA
1 AAAATTAAAA
6131013 TGAATCAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.26
15 6 0.26
16 11 0.48
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAATTAAAAAATAA
Found at i:6131007 original size:30 final size:31
Alignment explanation
Indices: 6130973--6131031 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
6130963 CTGTATAGTT
*
6130973 AAAATTAAAATTAA-AAAATTAAAAAATATA
1 AAAATTAAAATGAATAAAATTAAAAAATATA
* *
6131003 AAAATTAAAATGAATCAATTTAAAAAATA
1 AAAATTAAAATGAATAAAATTAAAAAATA
6131032 CGTAAAATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (31 bp):
AAAATTAAAATGAATAAAATTAAAAAATATA
Found at i:6133365 original size:26 final size:26
Alignment explanation
Indices: 6133329--6133438 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6133319 TGATACAAAT
6133329 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6133355 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6133381 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
6133407 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
6133433 TGATAA
1 TGATAA
6133439 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:6134953 original size:26 final size:26
Alignment explanation
Indices: 6134924--6134976 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
6134914 TTTACAGTTT
*
6134924 TACCCTTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
6134950 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
6134976 T
1 T
6134977 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:6141032 original size:19 final size:20
Alignment explanation
Indices: 6141008--6141045 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
6140998 TTGACGTTGT
6141008 GTGACATAT-AAAATAAATA
1 GTGACATATCAAAATAAATA
*
6141027 GTGACATATCAACATAAAT
1 GTGACATATCAAAATAAAT
6141046 TATATGTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (20 bp):
GTGACATATCAAAATAAATA
Found at i:6141264 original size:1 final size:1
Alignment explanation
Indices: 6141258--6141283 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
6141248 AATAGTGCTG
6141258 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
6141284 CCCTCTAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:6145679 original size:43 final size:42
Alignment explanation
Indices: 6145587--6145730 Score: 130
Period size: 42 Copynumber: 3.4 Consensus size: 42
6145577 GCCACAAAAA
* * * *
6145587 TTAGCGGCATTTTTTAAAAAAAGCGCCGTTAAAAGTACAGG-TCT
1 TTAGCGGCGTTTTTT-ATAAAAGCGCCGCT-AAAG-ACAGGACCT
*
6145631 ATAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGACTAGGACCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGAC-AGGACCT
* * * * *
6145674 TTAGCGGCG-CTCTTATAAAAACGTCGCCAAAGACCAGGACCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGA-CAGGACCT
*
6145716 TTATCGGCGTTTTTT
1 TTAGCGGCGTTTTTT
6145731 TTAGAACGTC
Statistics
Matches: 82, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 41 0.50
43 26 0.32
44 13 0.16
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (42 bp):
TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGACAGGACCT
Found at i:6145739 original size:42 final size:42
Alignment explanation
Indices: 6145632--6145742 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
6145622 TACAGGTCTA
* * * *
6145632 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGACTAGGACCTT
1 TAGCGGCGTTTTTTTTAAAA-CGTCGCCAAAGACCAGGACCTT
* * * *
6145675 TAGCGGCGCTCTTATAAAAACGTCGCCAAAGACCAGGACCTT
1 TAGCGGCGTTTTTTTTAAAACGTCGCCAAAGACCAGGACCTT
* *
6145717 TATCGGCGTTTTTTTTAGAACGTCGC
1 TAGCGGCGTTTTTTTTAAAACGTCGC
6145743 TATTGCTCTG
Statistics
Matches: 54, Mismatches: 14, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
42 39 0.72
43 15 0.28
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (42 bp):
TAGCGGCGTTTTTTTTAAAACGTCGCCAAAGACCAGGACCTT
Found at i:6153653 original size:15 final size:15
Alignment explanation
Indices: 6153633--6153661 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6153623 CAGACTTATT
6153633 ACAAAAGAAACAACA
1 ACAAAAGAAACAACA
6153648 ACAAAAGAAACAAC
1 ACAAAAGAAACAAC
6153662 TCTCTTTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.21, G:0.07, T:0.00
Consensus pattern (15 bp):
ACAAAAGAAACAACA
Found at i:6156121 original size:2 final size:2
Alignment explanation
Indices: 6156114--6156141 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6156104 CTCATATGTT
6156114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6156142 CATCATTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6156817 original size:40 final size:40
Alignment explanation
Indices: 6156773--6156883 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 40
6156763 TAAGTTACCA
* *
6156773 TAGTGAATCAGGAACAAATCCTATCCACTTTATATAT-TTC
1 TAGTGAATCAGGAATAAATCCTATTCACTTTA-ATATCTTC
* * *
6156813 TAGTGAA-CTAGGAATAAATCCTATTCTCTTTAATTTCTTT
1 TAGTGAATC-AGGAATAAATCCTATTCACTTTAATATCTTC
*
6156853 TAGTGAATCAAGAATAAATCCTATTCACTTT
1 TAGTGAATCAGGAATAAATCCTATTCACTTT
6156884 TAATTCTCGA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
39 4 0.07
40 56 0.92
41 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (40 bp):
TAGTGAATCAGGAATAAATCCTATTCACTTTAATATCTTC
Found at i:6157344 original size:17 final size:15
Alignment explanation
Indices: 6157316--6157349 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
6157306 CCCCAATTTC
6157316 TCCCTTTTCTTTCTT
1 TCCCTTTTCTTTCTT
6157331 TCCCTTTTTCCTTTCTT
1 TCCC-TTTT-CTTTCTT
6157348 TC
1 TC
6157350 TTTCTCCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (15 bp):
TCCCTTTTCTTTCTT
Found at i:6157404 original size:21 final size:22
Alignment explanation
Indices: 6157369--6157411 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
6157359 TGTTTTTTCG
6157369 TTTCTATTCTGTTCTTCCTTTT
1 TTTCTATTCTGTTCTTCCTTTT
* *
6157391 TTTCT-TTCTTTTCTTTCTTTT
1 TTTCTATTCTGTTCTTCCTTTT
6157412 GTTTATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTCTATTCTGTTCTTCCTTTT
Found at i:6157584 original size:8 final size:8
Alignment explanation
Indices: 6157571--6157609 Score: 78
Period size: 8 Copynumber: 4.9 Consensus size: 8
6157561 TTTAATTAAT
6157571 ATAATATA
1 ATAATATA
6157579 ATAATATA
1 ATAATATA
6157587 ATAATATA
1 ATAATATA
6157595 ATAATATA
1 ATAATATA
6157603 ATAATAT
1 ATAATAT
6157610 TTACTTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATATA
Found at i:6160123 original size:21 final size:21
Alignment explanation
Indices: 6160093--6160141 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 21
6160083 AATGTCAAAT
6160093 TTTAACAAAATTAATATTTACTA
1 TTTAA-AAAA-TAATATTTACTA
*
6160116 TTTAAAAAATATTATTTACTA
1 TTTAAAAAATAATATTTACTA
6160137 TTTAA
1 TTTAA
6160142 CAATGTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 16 0.64
22 4 0.16
23 5 0.20
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTAAAAAATAATATTTACTA
Found at i:6160570 original size:28 final size:29
Alignment explanation
Indices: 6160538--6160592 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
6160528 AAAATGGTGA
*
6160538 AATTT-ATTTT-TACTATTGTAAAAATTAC
1 AATTTAATTTTATACT-TTGAAAAAATTAC
6160566 AATTTAATTTTATACTTTGAAAAAATT
1 AATTTAATTTTATACTTTGAAAAAATT
6160593 TTCTAACTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 5 0.21
29 15 0.62
30 4 0.17
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (29 bp):
AATTTAATTTTATACTTTGAAAAAATTAC
Found at i:6161015 original size:31 final size:32
Alignment explanation
Indices: 6160951--6161017 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
6160941 TTACACTTTG
* *
6160951 GTCATTTAACTATTTAAAAGCTTTTCATTTAA
1 GTCATTGAACTATTCAAAAGCTTTTCATTTAA
*
6160983 GTCATTGAACTATTCAAAAGGTTTT-ATTTAA
1 GTCATTGAACTATTCAAAAGCTTTTCATTTAA
6161014 GTCA
1 GTCA
6161018 CTGGCTGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 10 0.31
32 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.43
Consensus pattern (32 bp):
GTCATTGAACTATTCAAAAGCTTTTCATTTAA
Found at i:6162803 original size:53 final size:54
Alignment explanation
Indices: 6162680--6162881 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
6162670 ATTAGGGTTT
* * *
6162680 AAGGATACCATGTGAGACCATGCCAAGGTATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGC-ATTGGTAAGGTTTCTAAGGC
* * * *
6162735 AAGGAAATCATGTAAGACCATGTCAAGGCATGGCATTTGTGA-G-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGGTTTC-TAAGGC
* *
6162788 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGGTTTCTAAGGC
* ** * *
6162837 AAGGATACCACGTAAGACCATGAAAAGTCATGGCAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGGT
6162882 ACCTGTGTAT
Statistics
Matches: 127, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
49 38 0.30
50 2 0.02
52 5 0.04
53 44 0.35
54 9 0.07
55 29 0.23
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGGTTTCTAAGGC
Found at i:6162974 original size:23 final size:24
Alignment explanation
Indices: 6162948--6162992 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
6162938 AAGGTAAGGT
*
6162948 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
6162971 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
6162993 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:6166412 original size:34 final size:34
Alignment explanation
Indices: 6166365--6166430 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
6166355 AAAACTGCAT
* * *
6166365 GACTGATATTGATACTGAGATGGGCTAAGGCCTA
1 GACTGATACTGATACTGAAAAGGGCTAAGGCCTA
* *
6166399 GACTGCTACTGATACTGAAAAGGGCTTAGGCC
1 GACTGATACTGATACTGAAAAGGGCTAAGGCC
6166431 CGGGACTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (34 bp):
GACTGATACTGATACTGAAAAGGGCTAAGGCCTA
Found at i:6168928 original size:20 final size:19
Alignment explanation
Indices: 6168897--6168934 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
6168887 GAAAATGTTA
6168897 TAAAAAATTATATAAATTG
1 TAAAAAATTATATAAATTG
*
6168916 TAAAAAATATATATGAATT
1 TAAAAAAT-TATATAAATT
6168935 ACGAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAAAAATTATATAAATTG
Found at i:6171152 original size:4 final size:4
Alignment explanation
Indices: 6171143--6171178 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
6171133 TAAAATGTAA
*
6171143 AAAT AAAT AATT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
6171179 TACAATGCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:6171366 original size:24 final size:24
Alignment explanation
Indices: 6171333--6171381 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
6171323 AAAGAAAAAT
* *
6171333 AATAGGTAAAAAAATAAATGAAGA
1 AATAGATAAAAAAATAAATAAAGA
* *
6171357 AATAGATAAATAAATAGATAAAGA
1 AATAGATAAAAAAATAAATAAAGA
6171381 A
1 A
6171382 TAAAGAATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.14, T:0.18
Consensus pattern (24 bp):
AATAGATAAAAAAATAAATAAAGA
Found at i:6171371 original size:12 final size:12
Alignment explanation
Indices: 6171319--6171378 Score: 50
Period size: 12 Copynumber: 5.1 Consensus size: 12
6171309 AACAAGCTAT
* *
6171319 ATAAAAAGAAAA
1 ATAAATAGATAA
*
6171331 AT-AATAGGTAA
1 ATAAATAGATAA
* * *
6171342 AAAAATAAATGA
1 ATAAATAGATAA
*
6171354 AGAAATAGATAA
1 ATAAATAGATAA
6171366 ATAAATAGATAA
1 ATAAATAGATAA
6171378 A
1 A
6171379 GAATAAAGAA
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
11 7 0.19
12 29 0.81
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (12 bp):
ATAAATAGATAA
Found at i:6171635 original size:3 final size:3
Alignment explanation
Indices: 6171619--6171718 Score: 96
Period size: 3 Copynumber: 34.0 Consensus size: 3
6171609 AGAAAGAAAT
* * * * *
6171619 ATA ATA CTA CTA ATA ATA ATA ATG CTA A-A TTA ATA AT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
6171665 ATA ATA ATA ATA ATA ATA ATA ACA GTA ATA GTA ATA AAA ATA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6171713 ATA ATA
1 ATA ATA
6171719 TTAAAATTAC
Statistics
Matches: 77, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
2 3 0.04
3 74 0.96
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:6172353 original size:13 final size:13
Alignment explanation
Indices: 6172335--6172362 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6172325 AGTCCCTCTT
6172335 TTATATATATATA
1 TTATATATATATA
6172348 TTATATATATATA
1 TTATATATATATA
6172361 TT
1 TT
6172363 TAAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTATATATATATA
Found at i:6173458 original size:10 final size:10
Alignment explanation
Indices: 6173445--6173479 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
6173435 AATTTTTTAT
6173445 TTTTTAAAAA
1 TTTTTAAAAA
6173455 TTTTTATAAAA
1 TTTTTA-AAAA
6173466 TTTTTTAAAAA
1 -TTTTTAAAAA
6173477 TTT
1 TTT
6173480 AAAATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.39
11 8 0.35
12 6 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:6173459 original size:11 final size:11
Alignment explanation
Indices: 6173443--6173479 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
6173433 AGAATTTTTT
6173443 ATTTTTTAAAA
1 ATTTTTTAAAA
6173454 A-TTTTTATAAA
1 ATTTTTTA-AAA
6173465 ATTTTTTAAAA
1 ATTTTTTAAAA
6173476 ATTT
1 ATTT
6173480 AAAATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 6 0.25
11 12 0.50
12 6 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTTTTTAAAA
Found at i:6175684 original size:26 final size:26
Alignment explanation
Indices: 6175612--6175739 Score: 159
Period size: 26 Copynumber: 4.9 Consensus size: 26
6175602 AAAATAGTTT
* ** *
6175612 TATTATTTACTTTAAATTGTCATATA
1 TATTATTTATTTTAAATTGTTTTGTA
* *
6175638 TATCATTTATTTAAAATTGTTTTGTA
1 TATTATTTATTTTAAATTGTTTTGTA
6175664 TATTATTTATTTTAAATTGTTTTGTA
1 TATTATTTATTTTAAATTGTTTTGTA
* *
6175690 TATTGTTTATTTCAAATTGTTTT-TACA
1 TATTATTTATTTTAAATTGTTTTGT--A
6175717 TATTATTTATTTTAAATTGTTTT
1 TATTATTTATTTTAAATTGTTTT
6175740 ACACTATTTA
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
25 1 0.01
26 65 0.74
27 22 0.25
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (26 bp):
TATTATTTATTTTAAATTGTTTTGTA
Found at i:6175737 original size:53 final size:52
Alignment explanation
Indices: 6175612--6175772 Score: 177
Period size: 52 Copynumber: 3.1 Consensus size: 52
6175602 AAAATAGTTT
* * * * *
6175612 TATTATTTACTTTAAATTGTCATATATATCATTTATTTAAAATTGTTTTGT--A
1 TATTATTTATTTTAAATTGT-TTTTATATTATTTATTTCAAATTGTTTT-TACA
*
6175664 TATTATTTATTTTAAATTGTTTTGTATATTGTTTATTTCAAATTGTTTTTACA
1 TATTATTTATTTTAAATTGTTTT-TATATTATTTATTTCAAATTGTTTTTACA
* * * *
6175717 TATTATTTATTTTAAATTG-TTTTACACTATTTACTTCAAGTTG-TTTTACA
1 TATTATTTATTTTAAATTGTTTTTATATTATTTATTTCAAATTGTTTTTACA
6175767 TATTAT
1 TATTAT
6175773 CTTGTTCCAT
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
50 13 0.14
51 18 0.19
52 44 0.46
53 20 0.21
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (52 bp):
TATTATTTATTTTAAATTGTTTTTATATTATTTATTTCAAATTGTTTTTACA
Found at i:6177174 original size:23 final size:22
Alignment explanation
Indices: 6177146--6177190 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
6177136 AAATTAAATA
6177146 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
6177169 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
6177191 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:6177193 original size:19 final size:19
Alignment explanation
Indices: 6177169--6177205 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
6177159 AATCATATCT
6177169 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6177188 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
6177206 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:6177213 original size:17 final size:19
Alignment explanation
Indices: 6177172--6177213 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
6177162 CATATCTTCT
*
6177172 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
6177191 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
6177208 AAGATT
1 AAGATT
6177214 ATATTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:6177610 original size:45 final size:45
Alignment explanation
Indices: 6177555--6177828 Score: 252
Period size: 45 Copynumber: 6.1 Consensus size: 45
6177545 GGAATGCGAT
* * *
6177555 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
6177600 ATCTGTTATCTTCGATCTGCTCCCTGCCTAATATAGAGAAGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
6177645 ATCTGCT-TCTTCAATCTGCTTCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
6177689 ATCTGTTATC-TCTGATTTGCTCCTCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
6177734 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* * *
6177779 ATCTGCTATGTCTTCGATCTGTTCCCCGTCTAAAACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
6177826 ATC
1 ATC
6177829 ATCTTGGATC
Statistics
Matches: 182, Mismatches: 36, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
43 7 0.04
44 44 0.24
45 100 0.55
46 2 0.01
47 18 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:6177677 original size:89 final size:89
Alignment explanation
Indices: 6177555--6177756 Score: 264
Period size: 89 Copynumber: 2.2 Consensus size: 89
6177545 GGAATGCGAT
* *
6177555 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCT-TCGATCTG
1 ATCTGCT-TCTTCGATCTGCTTCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCT-GATCTG
*
6177619 CTCC-CTGCCTAATATAGAGAAGCCAA
64 CTCCTC-GCCTAATACAGAGAAGCCAA
* * *
6177645 ATCTGCTTCTTCAATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTGATTTGCT
1 ATCTGCTTCTTCGATCTGCTTCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCT
* *
6177710 CCTCGTCTAATACAGAGATGCCAA
66 CCTCGCCTAATACAGAGAAGCCAA
* *
6177734 ATCTGTCATCTTGGATCTGCTTC
1 ATCTG-CTTCTTCGATCTGCTTC
6177757 GATGTAAACA
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
89 75 0.77
90 23 0.23
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (89 bp):
ATCTGCTTCTTCGATCTGCTTCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCT
CCTCGCCTAATACAGAGAAGCCAA
Found at i:6178062 original size:78 final size:78
Alignment explanation
Indices: 6177768--6178036 Score: 459
Period size: 78 Copynumber: 3.4 Consensus size: 78
6177758 ATGTAAACAC
* *
6177768 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGTTCCCCGTCTAAAACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
6177833 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
6177846 ATGAAAGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
6177910 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
6177924 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
6177989 TGGATGTGCTTCA
66 TGGATCTGCTTCA
6178002 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC
6178037 TTTGTCGAAT
Statistics
Matches: 179, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
77 2 0.01
78 175 0.98
79 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:6178279 original size:78 final size:78
Alignment explanation
Indices: 6178147--6178504 Score: 560
Period size: 78 Copynumber: 4.6 Consensus size: 78
6178137 AAGCCAAATT
*
6178147 TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTTCTTCAA
1 TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
6178212 TGAAGGTCCA-ATC
66 TGAAGGT-CAGATC
*
6178225 TGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
1 TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
6178290 TGAAGGTCCA-ATC
66 TGAAGGT-CAGATC
*
6178303 TGTTATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
1 TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
*
6178367 TAAAGGTCAGATC
66 TGAAGGTCAGATC
* * * *
6178380 TGCTGTGTCTTCAATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTTCAA
1 TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
6178445 TGAAGGTCAGATC
66 TGAAGGTCAGATC
* * * **
6178458 TGCTATGTCTTCGATTTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
6178505 TGTTTCTTCG
Statistics
Matches: 263, Mismatches: 15, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
76 2 0.01
77 70 0.27
78 191 0.73
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (78 bp):
TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
TGAAGGTCAGATC
Found at i:6178450 original size:155 final size:155
Alignment explanation
Indices: 6178147--6178504 Score: 558
Period size: 155 Copynumber: 2.3 Consensus size: 155
6178137 AAGCCAAATT
*
6178147 TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTTCTTCAA
1 TGCTATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
* * *
6178212 TGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
65 TAAAGGTCCAATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
6178277 GGATCTGCTTCAATGAAGGTCCA-ATC
130 GGATCTACTTCAATGAAGGT-CAGATC
*
6178303 TGTTATGTCTTCGATCTGCTCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
1 TGCTATGTCTTCGATCTGCTCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
* *
6178368 AAAGGT-CAGATCTGCTGTGTCTTCAATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTT
66 AAAGGTCCA-ATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
6178432 GGATCTACTTCAATGAAGGTCAGATC
130 GGATCTACTTCAATGAAGGTCAGATC
* * **
6178458 TGCTATGTCTTCGATTTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 TGCTATGTCTTCGATCTGCTC-CCGTCTAATACAGAGATGCCAAATC
6178505 TGTTTCTTCG
Statistics
Matches: 186, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
154 4 0.02
155 141 0.76
156 41 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (155 bp):
TGCTATGTCTTCGATCTGCTCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAT
AAAGGTCCAATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTACTTCAATGAAGGTCAGATC
Done.