Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 232 of 438
Found at i:71675807 original size:80 final size:80
Alignment explanation
Indices: 71675667--71675856 Score: 242
Period size: 80 Copynumber: 2.4 Consensus size: 80
71675657 GGCAAAATGG
* * * * *
71675667 TAATTTTACCC-ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
71675731 TACAAGGG-TATTTCGA
65 TA-AAGGGCTATTTCGA
* * *
71675747 TAATTCTACCCTACAGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
1 TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
* *
71675812 ATAGGGCTATTTGGA
66 AAAGGGCTATTTCGA
*
71675827 -AATTCTACCCTACAGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGTATTTCGGTAATT
71675857 TCACAATCAA
Statistics
Matches: 96, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 32 0.33
80 62 0.65
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (80 bp):
TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
AAAGGGCTATTTCGA
Found at i:71675897 original size:27 final size:27
Alignment explanation
Indices: 71675861--71676348 Score: 564
Period size: 27 Copynumber: 18.3 Consensus size: 27
71675851 GTAATTTCAC
* * *
71675861 AATCAAGGGTAAAACGGCAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
71675888 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
71675915 AA-CTGAGGGTAAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
71675942 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
71675969 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
71675996 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
** *
71676023 AA-CTGAGGGTAAAACAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
** *
71676050 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
71676077 ACT-GAGGGTAAAACGGTAATTC-GTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
71676102 AATCGAGGGTAAAACGGTAATT-TACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
71676128 AATAGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
71676155 AATCGAGGGTAAAA-AGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
71676181 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
71676208 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
71676235 AA-CTGAGGGTAAAATGGTAATTTTACA
1 AATC-GAGGGTAAAACGGTAATTCTATA
*
71676262 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
71676289 AATCGA-GGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
71676315 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
71676342 AATCGAG
1 AATCGAG
71676349 AGTACTTTGG
Statistics
Matches: 401, Mismatches: 45, Indels: 30
0.84 0.09 0.06
Matches are distributed among these distances:
25 7 0.02
26 106 0.26
27 283 0.71
28 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:71676390 original size:107 final size:107
Alignment explanation
Indices: 71675861--71676377 Score: 539
Period size: 107 Copynumber: 4.8 Consensus size: 107
71675851 GTAATTTCAC
* * * * *
71675861 AATCAAGGGTAAAACGGCAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGT
*** * * * * * *
71675925 AAACCAGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTACA
65 AAAATGGTAATTTTACAAATCGAGGGT-AAACAGTAATTCTATA
* * *
71675969 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGT
*** * ** * *
71676033 AAAACAATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
65 AAAATGGTAATTTTACAAATCGAGGGT-AAACAGTAATTCTATA
* * *
71676077 ACT-GAGGGTAAAACGGTAATTC-GTAAATCGAGGGTAAAACGGTAATT-TACAAATAGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
* * * *
71676139 AAACGGTAATTCTATAAATCGAGGGTAAAAAGTAATTCTATA
66 AAATGGTAATTTTACAAATCGAGGGTAAACAGTAATTCTATA
* *
71676181 AA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA-CTGAGGG
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGG
71676244 TAAAATGGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATA
64 TAAAATGGTAATTTTACAAATCGAGGGT-AAACAGTAATTCTATA
* *
71676289 AATCGA-GGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGAGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGT
*** *
71676352 ACTTTGGTAATTTTACAAGTCGAGGG
65 AAAATGGTAATTTTACAAATCGAGGG
71676378 CATTTCAGTA
Statistics
Matches: 356, Mismatches: 43, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
104 15 0.04
105 53 0.15
106 48 0.13
107 124 0.35
108 115 0.32
109 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (107 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
AAATGGTAATTTTACAAATCGAGGGTAAACAGTAATTCTATA
Found at i:71678368 original size:6 final size:6
Alignment explanation
Indices: 71678353--71678508 Score: 144
Period size: 6 Copynumber: 25.8 Consensus size: 6
71678343 AACCAAAATG
* *
71678353 AGAATC AGAATT AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
71678401 AGTAA-C AGAATC AGAATC AGAATT AGAATT AG-TTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
71678450 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
71678498 AGAATC AGAAT
1 AGAATC AGAAT
71678509 TACGTGACAG
Statistics
Matches: 125, Mismatches: 12, Indels: 26
0.77 0.07 0.16
Matches are distributed among these distances:
5 10 0.08
6 105 0.84
7 8 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.22
Consensus pattern (6 bp):
AGAATC
Found at i:71678387 original size:30 final size:30
Alignment explanation
Indices: 71678353--71678508 Score: 207
Period size: 30 Copynumber: 5.4 Consensus size: 30
71678343 AACCAAAATG
* *
71678353 AGAATCAGAATTAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
71678383 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
* *
71678413 AGAATCAGAATTAGAATTAGT---TG-A-C
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
71678438 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
71678468 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
71678498 AGAATCAGAAT
1 AGAATCAGAAT
71678509 TACGTGACAG
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
25 20 0.18
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.02
30 84 0.76
31 1 0.01
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.22
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:71678510 original size:24 final size:24
Alignment explanation
Indices: 71678353--71678533 Score: 137
Period size: 30 Copynumber: 6.7 Consensus size: 24
71678343 AACCAAAATG
* *
71678353 AGAATCAGAATTAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTAAC
71678377 AGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAG-----A-ATTAGTAAC
71678407 AGAATCAGAATCAGAATTAGAATTAGTTGAC
1 AGAATCAGAATCAGAATTAG---TA----AC
*
71678438 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATTAGTAAC
71678462 AGAATCAGAATCAGAATCAGTATTAGTAAC
1 AGAATCAGAATCAG----A--ATTAGTAAC
*
71678492 AGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCAGAATTA-GTAAC
*
71678517 AGAATCAGTATCAGAAT
1 AGAATCAGAATCAGAAT
71678534 GTGAATGCAA
Statistics
Matches: 131, Mismatches: 6, Indels: 39
0.74 0.03 0.22
Matches are distributed among these distances:
24 38 0.29
25 21 0.16
26 1 0.01
27 2 0.02
28 3 0.02
29 1 0.01
30 44 0.34
31 21 0.16
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTAAC
Found at i:71678533 original size:85 final size:84
Alignment explanation
Indices: 71678353--71678510 Score: 271
Period size: 85 Copynumber: 1.9 Consensus size: 84
71678343 AACCAAAATG
*
71678353 AGAATCAGAATTAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
* *
71678418 CAGAATTAGAATTAGTTGAC
66 CAGAATTAGAATCAGAT-AC
*
71678438 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
71678503 CAGAATTA
66 CAGAATTA
71678511 CGTGACAGAA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (84 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATTAGAATCAGATAC
Found at i:71678699 original size:27 final size:26
Alignment explanation
Indices: 71678653--71678724 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 26
71678643 CATGGCAGCT
* * *
71678653 AGAACAGATATCGTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACC
71678679 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACC
*
71678706 AGAATCAGATAATGTGGCA
1 AGAA-CAGATATTGTGGCA
71678725 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.10
27 36 0.90
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.18
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACC
Found at i:71678731 original size:27 final size:27
Alignment explanation
Indices: 71678675--71678732 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
71678665 GTGACAGAGT
* * *
71678675 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
71678702 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
71678729 CACC
1 CACC
71678733 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:71678937 original size:22 final size:22
Alignment explanation
Indices: 71678889--71678940 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
71678879 GTAAATACGT
*
71678889 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
71678911 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
71678933 TTGGCACA
1 TTGGCACA
71678941 GAGCTATTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:71679108 original size:27 final size:26
Alignment explanation
Indices: 71679035--71679116 Score: 103
Period size: 26 Copynumber: 3.1 Consensus size: 26
71679025 TCGATCGGTC
* *
71679035 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAA
*
71679061 ATACA-ATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAA
*
71679087 AACAGATATTTGTGGCATAGCCACCAA
1 AACAGATA-TTGTGGCAGAGCCACCAA
71679114 AAC
1 AAC
71679117 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
25 3 0.06
26 23 0.48
27 22 0.46
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAA
Found at i:71679344 original size:27 final size:27
Alignment explanation
Indices: 71679314--71679416 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
71679304 GGGGCAAAAT
* * *
71679314 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71679341 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71679368 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
71679395 GATAATTCTACCCTACAGGGGT
1 GGTAATTCTACCCTACAAGGGT
71679417 GGTGACAGCT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:71681434 original size:29 final size:29
Alignment explanation
Indices: 71681401--71681560 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
71681391 GTGACGAGAT
71681401 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71681430 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71681459 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
71681488 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
71681517 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
71681546 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
71681561 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:71689604 original size:29 final size:29
Alignment explanation
Indices: 71689571--71689730 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
71689561 GTGACGAGAT
71689571 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71689600 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71689629 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
71689658 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
71689687 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
71689716 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
71689731 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:71692772 original size:39 final size:40
Alignment explanation
Indices: 71692678--71692860 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
71692668 TCGAATGATG
* * *
71692678 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
71692716 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
71692756 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
71692795 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
71692834 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
71692861 AACAAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 23 0.18
39 45 0.36
40 57 0.46
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:71692882 original size:79 final size:79
Alignment explanation
Indices: 71692729--71692893 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
71692719 GGACTAAGAT
* ** *
71692729 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
*
71692794 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
71692808 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACAAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTTA-C
* *
71692871 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
71692887 CCGAAGG
1 CCGAAGG
71692894 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
ATCCGGGTTAAATC
Found at i:71694273 original size:27 final size:26
Alignment explanation
Indices: 71694241--71694339 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
71694231 GGGGTGTTAC
*
71694241 AGGGGTATTTTGGTAATTCTATCCTAT
1 AGGGGTATTTCGGTAATTCTA-CCTAT
* * *
71694268 AAGGGTATTTCAGTAAATCTACCATAT
1 AGGGGTATTTCGGTAATTCTACC-TAT
* *
71694295 AGGGGTATTTCGGAAATTCTACCCTAC
1 AGGGGTATTTCGGTAATTCTA-CCTAT
*
71694322 AGGGGTATTTCAGTAATT
1 AGGGGTATTTCGGTAATT
71694340 TCACAATCAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 2 0.03
27 55 0.93
28 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (26 bp):
AGGGGTATTTCGGTAATTCTACCTAT
Found at i:71694374 original size:27 final size:27
Alignment explanation
Indices: 71694344--71694890 Score: 683
Period size: 27 Copynumber: 20.3 Consensus size: 27
71694334 GTAATTTCAC
*
71694344 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
71694371 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
71694398 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
71694425 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71694452 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** * *
71694479 AATCGAGGGTAAAATAGAAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
71694506 AA-CTGAGGGTAAAACGATAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
71694533 AATCGAGGGTAAAATAGTAATTCTGT-
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71694559 AACCTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
71694587 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71694614 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
71694641 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71694668 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
71694695 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71694722 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
71694749 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
71694776 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71694803 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
71694830 AATCGAGGGTAAAA-GAGTAATTCTGTA
1 AATCGAGGGTAAAACG-GTAATTCTGTA
*
71694857 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
71694884 AATCGAG
1 AATCGAG
71694891 ATTACTTTGG
Statistics
Matches: 450, Mismatches: 58, Indels: 24
0.85 0.11 0.05
Matches are distributed among these distances:
26 8 0.02
27 434 0.96
28 8 0.02
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:71702125 original size:6 final size:6
Alignment explanation
Indices: 71702116--71702148 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
71702106 AATAAAATTG
*
71702116 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
71702149 GATAAGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:71717988 original size:40 final size:39
Alignment explanation
Indices: 71717897--71717998 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 39
71717887 ATAACCACGT
* *
71717897 GCACAAATGCCTTCGGGTCTTAGCCCAGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCAGATAGAATGACTA
* *
71717937 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCAGATAGAATG--ACTA
71717977 GCACAATTGCCTTCGGGTCTTA
1 GCACAA-TGCCTTCGGGTCTTA
71717999 ACCTGGATAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 49 0.91
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCAGATAGAATGACTA
Found at i:71727255 original size:80 final size:80
Alignment explanation
Indices: 71727081--71727299 Score: 214
Period size: 80 Copynumber: 2.7 Consensus size: 80
71727071 AGAATGGTGT
* *
71727081 CCGGGCTAAGTCCCGAAGGCTTTTC-TGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGC-GAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
* *
71727145 CGTGCGAGTTACCAAAA
64 CGTGCGAATCACCAAAA
* * *
71727162 CCAGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AATTCCCGAAGGC-ATT
* *
71727226 -GTGCGAATCACTATAA
64 CGTGCGAATCACCAAAA
* * * * * * *
71727242 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCG-CTATATCCGGTTAAATT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT-GACTAAATCCGGGTCAATTCCCGAAGG
71727300 TACGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
79 8 0.07
80 82 0.72
81 24 0.21
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTCG
TGCGAATCACCAAAA
Found at i:71727280 original size:40 final size:41
Alignment explanation
Indices: 71727132--71727285 Score: 145
Period size: 40 Copynumber: 3.8 Consensus size: 41
71727122 CCGGGTCAAT
* * * * * *
71727132 TCCCGAAGGCATTCGTGCGAGTTACCAAAACCAGGTTAA-G
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAATG
* *
71727172 TCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGGCTAAT-
1 TCCCGAAGGCAATCGTGCGAGTCACTATAA-CCGGGCTAATG
* *
71727212 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCT-ATG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAATG
* * * *
71727252 TCCCGAAGACAATCGAGCGAGTCGCTATATCCGG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGG
71727286 TTAAATTCCG
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.21
Consensus pattern (41 bp):
TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAATG
Found at i:71732215 original size:40 final size:40
Alignment explanation
Indices: 71732120--71732312 Score: 192
Period size: 40 Copynumber: 4.8 Consensus size: 40
71732110 CGAATGGTGT
* * * * *
71732120 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAAA
* *
71732161 CCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* *
71732201 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* * * *
71732241 CCGGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAAA
* * * *
71732281 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
71732313 CGCTATATCC
Statistics
Matches: 126, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.02
40 97 0.77
41 27 0.21
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
Found at i:71732254 original size:80 final size:80
Alignment explanation
Indices: 71732120--71732338 Score: 230
Period size: 80 Copynumber: 2.7 Consensus size: 80
71732110 CGAATGGTGT
* * *
71732120 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
71732184 CGTGCGAGTTACCAAAA
65 -GTGCGAATCACCAAAA
* *
71732201 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAATT
* *
71732265 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * * * * *
71732281 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCG-CTATATCCGGTTAAATT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT-GACTAAATCCGGGTCAATTCCCGAAGG
71732339 TACGTGATTC
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
79 8 0.07
80 80 0.69
81 28 0.24
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:71737252 original size:40 final size:40
Alignment explanation
Indices: 71737157--71737350 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
71737147 AGAATGGTGT
* * * * *
71737157 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAAA
* *
71737198 CCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* * *
71737238 CCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* * * *
71737278 CCGGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAAA
* * * *
71737318 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTT
71737351 GCTATATCCG
Statistics
Matches: 124, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
39 2 0.02
40 95 0.77
41 27 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
Found at i:71737291 original size:80 final size:81
Alignment explanation
Indices: 71737157--71737335 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 81
71737147 AGAATGGTGT
* *
71737157 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
71737221 CGTGCGAGTTACCAAAA
66 -GTGCGAATCACCAAAA
* * *
71737238 CCGGGTTAAGTCCCGAAGGCATTCGTG-TGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
71737301 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
71737318 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
71737336 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 57 0.67
81 27 0.32
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:71739656 original size:40 final size:40
Alignment explanation
Indices: 71739556--71739698 Score: 169
Period size: 40 Copynumber: 3.5 Consensus size: 40
71739546 TTGAATTCTT
* * *
71739556 GCACACTAAGTGCCAAAACATAGTCGAAGCTATTTCAATCTC
1 GCACACTAAGTGCC-ATACATAGTCGAAGCTATCTCAA-ATC
* * * *
71739598 TCACATTAAGTGTCATACACAGTCGAAGCTATCTCAAATC
1 GCACACTAAGTGCCATACATAGTCGAAGCTATCTCAAATC
* **
71739638 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
1 GCACACTAAGTGCCATACATAGTCGAAGCTATCTCAAATC
*
71739678 GCACATTAAGTGCCATACATA
1 GCACACTAAGTGCCATACATA
71739699 ACCGAGTTGT
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 55 0.64
41 20 0.23
42 11 0.13
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGTCGAAGCTATCTCAAATC
Found at i:71741551 original size:12 final size:12
Alignment explanation
Indices: 71741534--71741561 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
71741524 CACATACGCC
71741534 CGTGTACTAGGT
1 CGTGTACTAGGT
71741546 CGTGTACTAGGT
1 CGTGTACTAGGT
71741558 CGTG
1 CGTG
71741562 CCAAACCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.18, G:0.36, T:0.32
Consensus pattern (12 bp):
CGTGTACTAGGT
Found at i:71742609 original size:28 final size:28
Alignment explanation
Indices: 71742560--71742669 Score: 114
Period size: 28 Copynumber: 3.9 Consensus size: 28
71742550 GTCATTGAAT
** *
71742560 ACTTAATGCCTCGCATACTAAGTGCCATC
1 ACTTAATATCTCGCACACTAAGTGCCA-C
*
71742589 -CTTGATATCTCGCACACTAAGTGCCAC
1 ACTTAATATCTCGCACACTAAGTGCCAC
* * * *
71742616 ACTCAGTATCTCGTACACTAAGTTCCAC
1 ACTTAATATCTCGCACACTAAGTGCCAC
* *
71742644 ACTCAATATCTCGCACGCTAAGTGCC
1 ACTTAATATCTCGCACACTAAGTGCC
71742670 GTATATAGCA
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
27 1 0.01
28 66 0.99
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (28 bp):
ACTTAATATCTCGCACACTAAGTGCCAC
Found at i:71742705 original size:40 final size:40
Alignment explanation
Indices: 71742654--71742750 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
71742644 ACTCAATATC
* *
71742654 TCGCACGCTAAGTGCCGTATATAGCAAAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAGCAAAAGCTATCTCAAA
* ** * *
71742694 TCGCACACTAAGTGCTATATATAGCCGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCAAAAGCTATCTCAAA
*
71742734 TCTCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
71742751 CATAGCTGTA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCAAAAGCTATCTCAAA
Found at i:71748407 original size:28 final size:28
Alignment explanation
Indices: 71748346--71748443 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
71748336 TCACAAATTG
** * *
71748346 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
71748375 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
71748403 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
71748431 GCACTAAGTGTGC
1 GCACTAAGTGTGC
71748444 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:71756090 original size:28 final size:28
Alignment explanation
Indices: 71756029--71756126 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
71756019 TCACAAATTG
** * *
71756029 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
71756058 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
71756086 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
71756114 GCACTAAGTGTGC
1 GCACTAAGTGTGC
71756127 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:71758641 original size:23 final size:23
Alignment explanation
Indices: 71758616--71758743 Score: 127
Period size: 23 Copynumber: 5.6 Consensus size: 23
71758606 TGAGCTTATG
*
71758616 AACAGTAAGCTCTAATGAGCTGG
1 AACAGTAAGCTCTAATGAGCTGA
* *
71758639 AACGGTAAGCTCTAATGAGCTGG
1 AACAGTAAGCTCTAATGAGCTGA
* *
71758662 AAC-GTTAAGCTCTATTGAACT-A
1 AACAG-TAAGCTCTAATGAGCTGA
* * *
71758684 AACAGGAAGCTC-ATACGAGCTAA
1 AACAGTAAGCTCTA-ATGAGCTGA
*
71758707 AACAGTAAGCTCCAATGAGCTGAA
1 AACAGTAAGCTCTAATGAGCTG-A
71758731 AACAGTAAGCTCT
1 AACAGTAAGCTCT
71758744 TTCAAGCTGA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
21 1 0.01
22 14 0.16
23 58 0.67
24 14 0.16
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (23 bp):
AACAGTAAGCTCTAATGAGCTGA
Found at i:71762738 original size:43 final size:43
Alignment explanation
Indices: 71762683--71762855 Score: 197
Period size: 43 Copynumber: 4.0 Consensus size: 43
71762673 AGCTCGTACA
* * *
71762683 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCG
* * * ** * *
71762725 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCATATAACG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCG
*
71762768 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * *
71762811 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCG
71762854 AT
1 AT
71762856 AACCTAATGT
Statistics
Matches: 106, Mismatches: 22, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
42 6 0.06
43 99 0.93
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:71766031 original size:27 final size:29
Alignment explanation
Indices: 71766001--71766065 Score: 71
Period size: 32 Copynumber: 2.2 Consensus size: 29
71765991 ATAGTAATTA
71766001 TTATA-CGGAATTATTATTTAACTTAGGT
1 TTATATCGGAATTATTATTTAACTTAGGT
**
71766029 TATATTATTTTGAATTATTATTTAACTTAGG-
1 T-TA-TA-TCGGAATTATTATTTAACTTAGGT
71766060 TTATAT
1 TTATAT
71766066 TATTTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
28 2 0.06
29 4 0.13
30 4 0.13
31 1 0.03
32 20 0.65
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (29 bp):
TTATATCGGAATTATTATTTAACTTAGGT
Found at i:71766036 original size:19 final size:19
Alignment explanation
Indices: 71766012--71766070 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
71766002 TATACGGAAT
71766012 TATTATTTAACTTAGGTTA
1 TATTATTTAACTTAGGTTA
**
71766031 TATTA-TT---TT-GAAT-
1 TATTATTTAACTTAGGTTA
71766044 TATTATTTAACTTAGGTTA
1 TATTATTTAACTTAGGTTA
71766063 TATTATTT
1 TATTATTT
71766071 TATTTACTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
13 5 0.17
14 4 0.13
15 2 0.07
17 2 0.07
18 4 0.13
19 13 0.43
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (19 bp):
TATTATTTAACTTAGGTTA
Found at i:71766044 original size:32 final size:32
Alignment explanation
Indices: 71766008--71766071 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
71765998 TTATTATACG
71766008 GAATTATTATTTAACTTAGGTTATATTATTTT
1 GAATTATTATTTAACTTAGGTTATATTATTTT
71766040 GAATTATTATTTAACTTAGGTTATATTATTTT
1 GAATTATTATTTAACTTAGGTTATATTATTTT
71766072 ATTTACTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (32 bp):
GAATTATTATTTAACTTAGGTTATATTATTTT
Found at i:71766506 original size:14 final size:15
Alignment explanation
Indices: 71766479--71766509 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
71766469 CACATATCAA
71766479 ATTTCTATTTATTTC
1 ATTTCTATTTATTTC
71766494 ATTTCTA-TTATTTC
1 ATTTCTATTTATTTC
71766508 AT
1 AT
71766510 CCACTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTCTATTTATTTC
Found at i:71773274 original size:20 final size:20
Alignment explanation
Indices: 71773251--71773295 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
71773241 TCTCAAATTC
71773251 TAATTATTTTAAATTTAAAT
1 TAATTATTTTAAATTTAAAT
71773271 TAATTATTTTAAATTTAAAT
1 TAATTATTTTAAATTTAAAT
71773291 TAATT
1 TAATT
71773296 TTGAGCTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TAATTATTTTAAATTTAAAT
Found at i:71775372 original size:12 final size:12
Alignment explanation
Indices: 71775355--71775385 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
71775345 GTAAACTATT
71775355 AATATTAATAAA
1 AATATTAATAAA
*
71775367 AATATTAATACA
1 AATATTAATAAA
71775379 AATATTA
1 AATATTA
71775386 TTATTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
AATATTAATAAA
Found at i:71775389 original size:3 final size:3
Alignment explanation
Indices: 71775381--71775413 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
71775371 TTAATACAAA
71775381 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
71775414 ATAGATTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:71777687 original size:8 final size:8
Alignment explanation
Indices: 71777674--71777708 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
71777664 AAGGGCAAAG
71777674 AAATAATA
1 AAATAATA
71777682 AAATAATA
1 AAATAATA
71777690 AAATAATA
1 AAATAATA
71777698 AAATAATA
1 AAATAATA
71777706 AAA
1 AAA
71777709 ATGAAAAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAATAATA
Found at i:71777957 original size:22 final size:21
Alignment explanation
Indices: 71777896--71777957 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 21
71777886 TAAATTTAAA
**
71777896 TAAAATAAGTAAATAAAATAC
1 TAAAATAAAAAAATAAAATAC
* *
71777917 TAAAAT-AAAAATTCAAAAATAT
1 TAAAATAAAAAAAT--AAAATAC
71777939 TAAAAATAAAAAAATAAAA
1 T-AAAATAAAAAAATAAAA
71777958 AAGGGACTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 4 0.12
21 6 0.19
22 11 0.34
23 5 0.16
24 6 0.19
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAAATAAAAAAATAAAATAC
Found at i:71779126 original size:18 final size:18
Alignment explanation
Indices: 71779093--71779127 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71779083 AGTTTTCAAT
*
71779093 TTCGAATAACTCAAATAA
1 TTCGAATAAATCAAATAA
*
71779111 TTCGAATAAATTAAATA
1 TTCGAATAAATCAAATA
71779128 TCAAACTACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.31
Consensus pattern (18 bp):
TTCGAATAAATCAAATAA
Found at i:71780322 original size:47 final size:47
Alignment explanation
Indices: 71780240--71780381 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
71780230 GTTGAATTTA
* *
71780240 AAGCTTGTTAAA-TTGCTCTTAATATTTCCGAATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
71780286 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
* *
71780333 AAGCTTGTTAAATTTGCCCTTATTATTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
71780380 AA
1 AA
71780382 AGAAAATTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 12 0.13
47 79 0.87
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.43
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:71781258 original size:45 final size:45
Alignment explanation
Indices: 71781194--71781403 Score: 243
Period size: 45 Copynumber: 4.7 Consensus size: 45
71781184 TACTAGTCGA
* *
71781194 GCCTTTGAGCCTAGCAGGCTATAATACTGGTGAGAAACTAATTGG
1 GCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATACTAATTGG
* *
71781239 GCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAGATACT-ATTCGG
1 GCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATACTAATT-GG
* *
71781284 GCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGATACTATTTGG
1 GCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATACTAATTGG
* * *
71781329 G-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGATATGA-T-ATCGG
1 GCCTTT-GAGCCTAGCAGGCTATAATGCTGGTGAGAT-ACTAATTGG
* * *
71781373 G-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 GCCTTTGAGCCTAGCAGGCTATAATGCTGGTGA
71781404 ATGAATTCAG
Statistics
Matches: 146, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
42 11 0.08
43 14 0.10
44 13 0.09
45 105 0.72
46 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (45 bp):
GCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATACTAATTGG
Found at i:71781344 original size:90 final size:89
Alignment explanation
Indices: 71781184--71781403 Score: 295
Period size: 90 Copynumber: 2.5 Consensus size: 89
71781174 TATCGTACAG
* * *
71781184 TACTAGTCGAGCCTTTGAGCCTAGCAGGCTATAATACTGGTGAGAAACTAATTGGGCCTTTGAGC
1 TACTA-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGAAACTAATTGGGCCTTTGAGC
*
71781249 TTAGCAGGCTATAATGCCGGTGAGA
65 CTAGCAGGCTATAATGCCGGTGAGA
* *
71781274 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGATACTATTTGGG-CTTTCGAG
1 TACTA-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGAAACTAATTGGGCCTTT-GAG
*
71781338 CCTAGCAGGCTATAATGCCGGTGATA
64 CCTAGCAGGCTATAATGCCGGTGAGA
* *
71781364 TGA-TATCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTATCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGA
71781404 ATGAATTCAG
Statistics
Matches: 118, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
87 10 0.08
88 18 0.15
89 9 0.08
90 80 0.68
91 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (89 bp):
TACTATCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGAAACTAATTGGGCCTTTGAGCC
TAGCAGGCTATAATGCCGGTGAGA
Found at i:71786451 original size:41 final size:40
Alignment explanation
Indices: 71786299--71786467 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
71786289 AGGAATTTAA
* * * * *
71786299 CCGGATATAGCT-ACTCGCTCAAATGTCTTCGGGACATAGC
1 CCGGATATAG-TAACTAGCACAAAAGCCTTCGGGACTTAGC
* * * **
71786339 CCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCACAAAAGCCTTCGGGACTTAGC
* * * * *
71786379 CCGGATTTAGTAACTCGCACAAATGCATTC-GGATCTTAGT
1 CCGGATATAGTAACTAGCACAAAAGCCTTCGGGA-CTTAGC
*
71786419 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TAGCACAAAAGCCTTCGGGACTTAGC
71786460 CCGGATAT
1 CCGGATAT
71786468 CATTCGAATA
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
39 4 0.04
40 74 0.69
41 26 0.24
42 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTAGCACAAAAGCCTTCGGGACTTAGC
Found at i:71791234 original size:47 final size:47
Alignment explanation
Indices: 71791150--71791385 Score: 350
Period size: 47 Copynumber: 5.0 Consensus size: 47
71791140 GTTGAATTTA
* *
71791150 AAGCTTGTTAAA-TTGCTCTTAATATTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCTAGATAAGTTACTTAGTT
* *
71791196 AAGCTTGTTAAATTTGCCCTTAATATTTCTGGAGAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCTAGATAAGTTACTTAGTT
* * *
71791243 AAGCTTGTTAAATTTGCCTTTAATATTTCCAGATAACTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCTAGATAAGTTACTTAGTT
* *
71791290 AAGCTTGTTAAATTTGCCCTTAATATTT-TCGGATAAGGTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCT-AGATAAGTTACTTAGTT
* *
71791337 AAGCTTGTTAAATTTACCCTTATTATTTCTAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCTAGATAAGTTACTTAGTT
71791384 AA
1 AA
71791386 ATAAAATTTT
Statistics
Matches: 169, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
46 12 0.07
47 156 0.92
48 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCTAGATAAGTTACTTAGTT
Found at i:71792242 original size:45 final size:45
Alignment explanation
Indices: 71792178--71792296 Score: 220
Period size: 45 Copynumber: 2.6 Consensus size: 45
71792168 TATCGTACAG
71792178 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
*
71792223 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
*
71792268 TACTATTCGGGCCTTCGAGCCTAGCAGGC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGC
71792297 AAAATGCCAG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
Found at i:71796072 original size:16 final size:15
Alignment explanation
Indices: 71796048--71796077 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
71796038 AACTGTTTTA
71796048 TTACAAATTTCACTC
1 TTACAAATTTCACTC
71796063 TTACATAATTTCACT
1 TTACA-AATTTCACT
71796078 TAGTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:71796474 original size:101 final size:101
Alignment explanation
Indices: 71796338--71796519 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
71796328 TCAGTACACG
* *
71796338 TAGTAGCCTGAACTTAGTACTACACACATGACCTAACCATATGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGAACTTAGTACTACACACACGACCTAACCATATGATAAACGTAGTAGCCTGCACTT
71796403 AGTACTACACACGTGATTGAAGTTGTCAGGTATGCA
66 AGTACTACACACGTGATTGAAGTTGTCAGGTATGCA
* ** * * * *
71796439 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTAAACGTAGTAGCTTGCACTT
1 TAGTAGCCTGAACTTAGTACTACACACACGACCTAACCATATGATAAACGTAGTAGCCTGCACTT
*
71796504 AGTACTACATACGTGA
66 AGTACTACACACGTGA
71796520 CCTAAAACCA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGAACTTAGTACTACACACACGACCTAACCATATGATAAACGTAGTAGCCTGCACTT
AGTACTACACACGTGATTGAAGTTGTCAGGTATGCA
Found at i:71796522 original size:50 final size:50
Alignment explanation
Indices: 71796289--71796524 Score: 208
Period size: 50 Copynumber: 4.7 Consensus size: 50
71796279 TCGGTACGAA
* * * ** * *
71796289 TAGTAGCCTACACTTAGTACTACACATGCGACC-AAAAAT-TCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCT-GGTAAACG
* * * * * *
71796338 TAGTAGCCTGAACTTAGTACTACACACATGACCTAACCATATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTAAACG
* * * * ** *
71796388 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCAGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGGTAAACG
* *
71796439 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTAAACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTAAACG
* *
71796489 TAGTAGCTTGCACTTAGTACTACATACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
71796525 AACCATCTTA
Statistics
Matches: 148, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
49 29 0.20
50 81 0.55
51 37 0.25
52 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTAAACG
Found at i:71796537 original size:50 final size:49
Alignment explanation
Indices: 71796289--71796566 Score: 184
Period size: 50 Copynumber: 5.5 Consensus size: 49
71796279 TCGGTACGAA
* * ** * *
71796289 TAGTAGCCTACACTTAGTACTACACATGCGACC-AAAAATTCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCA-TCTGTAAACG
* ** * *
71796338 TAGTAGCCTGAACTTAGTACTACACACATGACCTAACCATATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTG-TAAACG
* * *** * ** *
71796388 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCAGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCT-AA-CCATC-TGTAAACG
* *
71796439 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTAAACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCT-GTAAACG
* * * *
71796489 TAGTAGCTTGCACTTAGTACTACATACGTGACCTAAAACCATCT-TAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACCATCTGT-AA-ACG
* * *
71796541 TAGTAGCCTACACATAGTACTCCACA
1 TAGTAGCCTGCACTTAGTACTACACA
71796567 TGTATTCTCA
Statistics
Matches: 178, Mismatches: 40, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
49 31 0.17
50 78 0.44
51 37 0.21
52 32 0.18
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGTAAACG
Found at i:71798052 original size:2 final size:2
Alignment explanation
Indices: 71798045--71798072 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
71798035 CATTCATAAA
71798045 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71798073 GCATATCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71803124 original size:16 final size:15
Alignment explanation
Indices: 71803100--71803129 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
71803090 AACTGTTTTA
71803100 TTACAAATTTCACTC
1 TTACAAATTTCACTC
71803115 TTACATAATTTCACT
1 TTACA-AATTTCACT
71803130 TAGTCCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:71803449 original size:50 final size:49
Alignment explanation
Indices: 71803340--71803568 Score: 253
Period size: 50 Copynumber: 4.6 Consensus size: 49
71803330 ATCTGGTACG
* * **
71803340 CGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACA
1 CGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCT-AAACA
** *
71803389 CGTAGTAGCCTATACTTAGTACTACACACGTGACCTAACCATCTAATACA
1 CGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAA-ACA
* * *
71803439 CGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGAACA
1 CGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCT-AAACA
* *
71803489 CGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACA
1 CGTAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACCATC-TAAACA
* * * *
71803541 CATAGTAGCCTACACATAGTGCTACACA
1 CGTAGTAGCCTGCACTTAGTACTACACA
71803569 TATGCTCTCA
Statistics
Matches: 151, Mismatches: 23, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
49 31 0.21
50 85 0.56
51 1 0.01
52 33 0.22
53 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (49 bp):
CGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAAACA
Found at i:71803518 original size:100 final size:100
Alignment explanation
Indices: 71803340--71803569 Score: 338
Period size: 100 Copynumber: 2.3 Consensus size: 100
71803330 ATCTGGTACG
* *
71803340 CGTAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCCTATACT
1 CGTAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGAACACGTAGTAGCCTACACT
71803405 TAGTACTACACACGTGACCT-AACCATC-TAATACA
66 TAGTACTACACACGTGACCTAAACCATCTTAA-ACA
* * *
71803439 CGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGAACACGTAGTAGCTTGCAC
1 CGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGAACACGTAGTAGCCTACAC
71803504 TTAGTACTACACACGTGACCTAAAACCATCTTAAACA
65 TTAGTACTACACACGTGACCT-AAACCATCTTAAACA
* * * *
71803541 CATAGTAGCCTACACATAGTGCTACACAT
1 CGTAGTAGCCTGCACTTAGTACTACACAT
71803570 ATGCTCTCAC
Statistics
Matches: 118, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
99 35 0.30
100 45 0.38
102 35 0.30
103 3 0.03
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (100 bp):
CGTAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGAACACGTAGTAGCCTACACT
TAGTACTACACACGTGACCTAAACCATCTTAAACA
Found at i:71805456 original size:42 final size:42
Alignment explanation
Indices: 71805410--71805511 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 42
71805400 CCCAGCTATA
** * * *
71805410 GTCTTACACGATGTCCCTTATCGATG-CTATGTCCCAGACATG
1 GTCTTACACGAAATCACATATCGATGTC-ATATCCCAGACATG
*
71805452 GTCTTACACGAAATCACATATCGATGTCATATCCCAGATATG
1 GTCTTACACGAAATCACATATCGATGTCATATCCCAGACATG
*
71805494 GTCTTACATGAAATCACA
1 GTCTTACACGAAATCACA
71805512 CATAACCCTA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 51 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
GTCTTACACGAAATCACATATCGATGTCATATCCCAGACATG
Found at i:71807868 original size:16 final size:16
Alignment explanation
Indices: 71807844--71807882 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
71807834 GGACTAGACT
71807844 TTTTATTTATTTTTAG
1 TTTTATTTATTTTTAG
* *
71807860 TTTTGTTTATTTTTTG
1 TTTTATTTATTTTTAG
71807876 TTTTATT
1 TTTTATT
71807883 GTTTATAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (16 bp):
TTTTATTTATTTTTAG
Found at i:71808232 original size:95 final size:95
Alignment explanation
Indices: 71808080--71808397 Score: 352
Period size: 95 Copynumber: 3.4 Consensus size: 95
71808070 GGGTTTGTCG
* * * *
71808080 CTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAATCTTATAGCTTAATCTGTTCC
1 CTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAA-CTGATACCTTAATCTGTTCC
*
71808145 ACTGTAACTTCAGGGGAAATAAGATTCGC-AT
65 ACTGCAACTTCA-GGGAAATAAGATTCGCTAT
* *
71808176 -TTTCAATCTGCGCCACT-CAACTTCAAGGAGATAAGATTTGTAACTGGTACCTTTAATCTGTTC
1 CTTT-AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTGATACC-TTAATCTGTTC
71808239 CACTGCAACTTCAGGGAAATAAGATTCGCTAT
64 CACTGCAACTTCAGGGAAATAAGATTCGCTAT
* **
71808271 CTTTAATCTGCTCGACTGCAACTTCAAGGAGATAAGATTTGTAACT--T--C--AATCTACTCCA
1 CTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTGATACCTTAATCTGTTCCA
* * * * **
71808330 CTGCAATTTCAAGGAGATAAGATTTG-TGG
66 CTGCAACTTCAGGGAAATAAGATTCGCTAT
* *
71808359 CTTTAATCTGCTCCACTGTAACTTC-AGGAATATAAGATT
1 CTTTAATCTGCTCCACTGCAACTTCAAGG-AGATAAGATT
71808398 CGTCATGATG
Statistics
Matches: 196, Mismatches: 20, Indels: 20
0.83 0.08 0.08
Matches are distributed among these distances:
87 3 0.02
88 33 0.17
89 31 0.16
92 1 0.01
94 22 0.11
95 63 0.32
96 43 0.22
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (95 bp):
CTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTGATACCTTAATCTGTTCCA
CTGCAACTTCAGGGAAATAAGATTCGCTAT
Found at i:71808290 original size:45 final size:44
Alignment explanation
Indices: 71808133--71808400 Score: 227
Period size: 44 Copynumber: 5.9 Consensus size: 44
71808123 ATCTTATAGC
* * * * *
71808133 TTAATCTGTTCCACTGTAACTTCAGGGGAAATAAGATTCGCAT-T
1 TTAATCTGCTCCACTGCAACTTCA-AGGAGATAAGATTCGTATCT
* *
71808177 TTCAATCTGCGCCACT-CAACTTCAAGGAGATAAGATTTGTAACTGGTACCT
1 TT-AATCTGCTCCACTGCAACTTCAAGGAGATAAGA--T-T--C--GTATCT
* * *
71808228 TTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCT
1 TTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCG-TATCT
* * *
71808273 TTAATCTGCTCGACTGCAACTTCAAGGAGATAAGATTTGTAACT
1 TTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTATCT
* * * * **
71808317 TCAATCTACTCCACTGCAATTTCAAGGAGATAAGATTTGTGGCT
1 TTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTATCT
* *
71808361 TTAATCTGCTCCACTGTAACTTC-AGGAATATAAGATTCGT
1 TTAATCTGCTCCACTGCAACTTCAAGG-AGATAAGATTCGT
71808401 CATGATGACT
Statistics
Matches: 182, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
43 12 0.07
44 82 0.45
45 50 0.27
46 2 0.01
48 2 0.01
49 1 0.01
50 13 0.07
51 20 0.11
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
TTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTATCT
Found at i:71808892 original size:15 final size:15
Alignment explanation
Indices: 71808872--71808904 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
71808862 TTGAATATTA
*
71808872 TTAGTCCATTAATTG
1 TTAGTCCATTAATCG
71808887 TTAGTCCATTAATCG
1 TTAGTCCATTAATCG
71808902 TTA
1 TTA
71808905 TTTCAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.45
Consensus pattern (15 bp):
TTAGTCCATTAATCG
Found at i:71816486 original size:19 final size:20
Alignment explanation
Indices: 71816470--71816514 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
71816460 TTATGAAACT
*
71816470 TAATGCATAT-AATGAAATG
1 TAATGCAGATGAATGAAATG
71816489 TAATGCAGATGAATGAAATG
1 TAATGCAGATGAATGAAATG
71816509 -AATGCA
1 TAATGCA
71816515 AAAAAAGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATG
Found at i:71818842 original size:12 final size:12
Alignment explanation
Indices: 71818815--71818858 Score: 51
Period size: 10 Copynumber: 4.0 Consensus size: 12
71818805 AAAAATTACC
71818815 AAAATTAA-TA-
1 AAAATTAATTAT
*
71818825 AAAATTTATTAT
1 AAAATTAATTAT
71818837 AAAATTAA-T-T
1 AAAATTAATTAT
71818847 AAAATTAATTAT
1 AAAATTAATTAT
71818859 TCTAATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 16 0.57
11 4 0.14
12 8 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AAAATTAATTAT
Found at i:71818843 original size:22 final size:22
Alignment explanation
Indices: 71818815--71818858 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
71818805 AAAAATTACC
*
71818815 AAAATTAATAAAAATTTATTAT
1 AAAATTAATAAAAATTAATTAT
*
71818837 AAAATTAATTAAAATTAATTAT
1 AAAATTAATAAAAATTAATTAT
71818859 TCTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATAAAAATTAATTAT
Found at i:71818894 original size:27 final size:27
Alignment explanation
Indices: 71818817--71818887 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 27
71818807 AAATTACCAA
*
71818817 AATTAATAAA-AATTTATTATAA-AA-TT
1 AATTAA-AAATAA-TTATTCTAATAATTT
*
71818843 AATTAAAATTAATTATTCTAATAATTT
1 AATTAAAAATAATTATTCTAATAATTT
71818870 AATTACAAAATAATTATT
1 AATTA-AAAATAATTATT
71818888 TTATAATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
25 10 0.26
26 10 0.26
27 7 0.18
28 11 0.29
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (27 bp):
AATTAAAAATAATTATTCTAATAATTT
Found at i:71820048 original size:131 final size:131
Alignment explanation
Indices: 71819814--71820063 Score: 482
Period size: 131 Copynumber: 1.9 Consensus size: 131
71819804 AACCAAGCTA
71819814 TTAAGAGTTGTACATATCCAACAAATCTTCCTTCACCCACTCTCCGGCATGCACTCAAAGATCTA
1 TTAAGAGTTGTACATATCCAACAAATCTTCCTTCACCCACTCTCCGGCATGCACTCAAAGATCTA
*
71819879 AAGGTTTCAACCAAAATCGTCGGGACAGGCGTGACCCTTTTATCAAGCTTGTCAGGCGTGACCCT
66 AAGGTTTCAACCAAAATCGTCGGGACAGGCGTGACCCTTTTATCAAGCTAGTCAGGCGTGACCCT
71819944 T
131 T
*
71819945 TTAAGAGTTGTACATATCCAACAAATCTTCCTTCACCCACTCTCCGGTATGCACTCAAAGATCTA
1 TTAAGAGTTGTACATATCCAACAAATCTTCCTTCACCCACTCTCCGGCATGCACTCAAAGATCTA
71820010 AAGGTTTCAACCAAAATCGTCGGGACAGGCGTGACCCTTTTATCAAGCTAGTCA
66 AAGGTTTCAACCAAAATCGTCGGGACAGGCGTGACCCTTTTATCAAGCTAGTCA
71820064 AATAGATCTA
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 117 1.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (131 bp):
TTAAGAGTTGTACATATCCAACAAATCTTCCTTCACCCACTCTCCGGCATGCACTCAAAGATCTA
AAGGTTTCAACCAAAATCGTCGGGACAGGCGTGACCCTTTTATCAAGCTAGTCAGGCGTGACCCT
T
Found at i:71822343 original size:3 final size:3
Alignment explanation
Indices: 71822269--71822324 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
71822259 TATTAACATA
71822269 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
71822317 AAT AAT AA
1 AAT AAT AA
71822325 GATGAATAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:71822402 original size:8 final size:8
Alignment explanation
Indices: 71822389--71822414 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
71822379 GCAAAGAAAT
71822389 AATAATAA
1 AATAATAA
71822397 AATAATAA
1 AATAATAA
71822405 AATAATAA
1 AATAATAA
71822413 AA
1 AA
71822415 ATGAAAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:71825760 original size:9 final size:9
Alignment explanation
Indices: 71825746--71825778 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
71825736 GTTAATTGAA
71825746 TCGAGTTAT
1 TCGAGTTAT
71825755 TCGAGTTAT
1 TCGAGTTAT
*
71825764 TCAAGTTAT
1 TCGAGTTAT
71825773 TCGAGT
1 TCGAGT
71825779 CAACTCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:71825957 original size:19 final size:19
Alignment explanation
Indices: 71825933--71825981 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
71825923 AAAAAATAAA
71825933 AAAAATCAAATTAATTTTC
1 AAAAATCAAATTAATTTTC
*
71825952 AAAAATTCAAATTAATTTTT
1 AAAAA-TCAAATTAATTTTC
*
71825972 AAAATTCAAA
1 AAAAATCAAA
71825982 ATATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATCAAATTAATTTTC
Found at i:71825983 original size:20 final size:20
Alignment explanation
Indices: 71825940--71826004 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
71825930 AAAAAAAATC
71825940 AAATTAATTTTCAAAAATTC-
1 AAATTAATTTT-AAAAATTCA
*
71825960 AAATTAATTTTTAAAATTCA
1 AAATTAATTTTAAAAATTCA
71825980 AAA-T-ATTTATAAAAATTCTA
1 AAATTAATTT-TAAAAATTC-A
71826000 AAATT
1 AAATT
71826005 TATATTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 4 0.10
19 16 0.41
20 18 0.46
21 1 0.03
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (20 bp):
AAATTAATTTTAAAAATTCA
Found at i:71825994 original size:19 final size:19
Alignment explanation
Indices: 71825952--71826008 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
71825942 ATTAATTTTC
*
71825952 AAAAATTCAAATTAATTT-T
1 AAAAATTCAAAAT-ATTTAT
*
71825971 TAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
71825990 AAAAATTCTAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
71826008 A
1 A
71826009 TTTTTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 11 0.33
19 22 0.67
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:71830036 original size:4 final size:4
Alignment explanation
Indices: 71830027--71830057 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
71830017 GGCATAAGCA
71830027 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
71830058 AGAGAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:71832958 original size:6 final size:6
Alignment explanation
Indices: 71832947--71832990 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
71832937 ATTTATTTTA
71832947 AATACT AATACT AATACT AATACT AATACT AATACT AATACT AA
1 AATACT AATACT AATACT AATACT AATACT AATACT AATACT AA
71832991 ATTAATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
AATACT
Found at i:71833874 original size:21 final size:22
Alignment explanation
Indices: 71833841--71833884 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
71833831 TTAAAAATGG
* *
71833841 AAAAATAATAACTCTTTAAAAT
1 AAAAATAAAAACTATTTAAAAT
*
71833863 AAAAA-AAAAACTATTTTAAAT
1 AAAAATAAAAACTATTTAAAAT
71833884 A
1 A
71833885 TATATTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAATAAAAACTATTTAAAAT
Found at i:71834124 original size:19 final size:19
Alignment explanation
Indices: 71834095--71834131 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
71834085 TGATTCAAAG
71834095 AAAATAAATTATTAAAAATT
1 AAAATAAATTA-TAAAAATT
71834115 AAAA-AAATTATAAAAAT
1 AAAATAAATTATAAAAAT
71834132 AGGTTCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 6 0.35
20 4 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATAAATTATAAAAATT
Found at i:71834828 original size:19 final size:17
Alignment explanation
Indices: 71834795--71834838 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
71834785 TATCATTGAA
*
71834795 TTTTGAAATT-TTTATAT
1 TTTTAAAATTATTT-TAT
*
71834812 TTTCAAAATTATTTTAT
1 TTTTAAAATTATTTTAT
71834829 TTTTAAAATT
1 TTTTAAAATT
71834839 TTAAAGAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 20 0.87
18 3 0.13
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTTAAAATTATTTTAT
Found at i:71834829 original size:17 final size:17
Alignment explanation
Indices: 71834800--71834840 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
71834790 TTGAATTTTG
71834800 AAATTTTTATATTTTCA
1 AAATTTTTATATTTTCA
*
71834817 AAATTATTT-TATTTTTA
1 AAATT-TTTATATTTTCA
71834834 AAATTTT
1 AAATTTT
71834841 AAAGAGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 17 0.77
18 3 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (17 bp):
AAATTTTTATATTTTCA
Found at i:71838888 original size:26 final size:26
Alignment explanation
Indices: 71838859--71838992 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 26
71838849 TGGTACAAAT
*
71838859 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
71838885 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
71838911 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
71838937 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
71838963 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
71838989 TGAT
1 TGAT
71838993 GAGCATTTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:71843107 original size:25 final size:26
Alignment explanation
Indices: 71843059--71843108 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
71843049 AAAGTTGAAG
* *
71843059 GCCAAAGTAATAAAAATAAAATTAGA
1 GCCAAAATAACAAAAATAAAATTAGA
*
71843085 GCCAAAATAACAAAAA-AACATTAG
1 GCCAAAATAACAAAAATAAAATTAG
71843109 GGGCTAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.62, C:0.12, G:0.10, T:0.16
Consensus pattern (26 bp):
GCCAAAATAACAAAAATAAAATTAGA
Found at i:71847110 original size:41 final size:41
Alignment explanation
Indices: 71847065--71847147 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
71847055 TTTCCCAAAT
71847065 ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
1 ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
71847106 ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
1 ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
71847147 A
1 A
71847148 GAAAAGAGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.29
Consensus pattern (41 bp):
ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
Found at i:71852471 original size:41 final size:42
Alignment explanation
Indices: 71852355--71852491 Score: 206
Period size: 42 Copynumber: 3.3 Consensus size: 42
71852345 CGAAACTATA
*
71852355 TGTAAGACCATATCTAGGATATGACATCATTATGAGACTTTG
1 TGTAAGACCATATCTAGGATATGACATCAATATGAGACTTTG
* * * *
71852397 TGTAAGACCATGTCTGGGATATGGCATCGATATGAGA-TTTCG
1 TGTAAGACCATATCTAGGATATGACATCAATATGAGACTTT-G
71852439 TGTAAGACCATATCT-GGATATGACATCAATATGAGACTTTG
1 TGTAAGACCATATCTAGGATATGACATCAATATGAGACTTTG
71852480 TGTAAGACCATA
1 TGTAAGACCATA
71852492 GCTGGGCTAT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
41 35 0.41
42 50 0.59
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGACATCAATATGAGACTTTG
Found at i:71852497 original size:83 final size:85
Alignment explanation
Indices: 71852355--71852512 Score: 259
Period size: 83 Copynumber: 1.9 Consensus size: 85
71852345 CGAAACTATA
*
71852355 TGTAAGACCATATCTAGGATATGACATCATTATGAGACTTTGTGTAAGACCATGTCTGGGATA-T
1 TGTAAGACCATATCTAGGATATGACATCAATATGAGACTTTGTGTAAGACCATGTCTGGGATATT
71852419 GGCATCGATATGAGATTTCG
66 GGCATCGATATGAGATTTCG
*
71852439 TGTAAGACCATATCT-GGATATGACATCAATATGAGACTTTGTGTAAGACCATAG-CTGGGCTAT
1 TGTAAGACCATATCTAGGATATGACATCAATATGAGACTTTGTGTAAGACCAT-GTCTGGGATAT
*
71852502 TGGCATTGATA
65 TGGCATCGATA
71852513 CAAGATCCCA
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
83 43 0.62
84 26 0.38
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (85 bp):
TGTAAGACCATATCTAGGATATGACATCAATATGAGACTTTGTGTAAGACCATGTCTGGGATATT
GGCATCGATATGAGATTTCG
Found at i:71852535 original size:84 final size:84
Alignment explanation
Indices: 71852358--71852536 Score: 245
Period size: 83 Copynumber: 2.1 Consensus size: 84
71852348 AACTATATGT
*
71852358 AAGACCATATCTAGGATATGACATCATTATGAGACTTTGTGTAAGACCATGTCTGGGATATGGCA
1 AAGACCATATCTAGGATATGACATCAATATGAGACTTTGTGTAAGACCATGTCTGGGATATGGCA
** ** * *
71852423 TCGATATGAGATTTCGTGT
66 TCGATACAAGATCCCATGC
*
71852442 AAGACCATATCT-GGATATGACATCAATATGAGACTTTGTGTAAGACCATAG-CTGGGCTATTGG
1 AAGACCATATCTAGGATATGACATCAATATGAGACTTTGTGTAAGACCAT-GTCTGGGATA-TGG
*
71852505 CATTGATACAAGATCCCATGC
64 CATCGATACAAGATCCCATGC
71852526 AAGACCATATC
1 AAGACCATATC
71852537 CGGGATATCC
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
83 43 0.51
84 41 0.49
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (84 bp):
AAGACCATATCTAGGATATGACATCAATATGAGACTTTGTGTAAGACCATGTCTGGGATATGGCA
TCGATACAAGATCCCATGC
Found at i:71861171 original size:37 final size:38
Alignment explanation
Indices: 71861129--71861211 Score: 150
Period size: 37 Copynumber: 2.2 Consensus size: 38
71861119 AAAAAGATAA
71861129 AATATTTCTTAATTTAAAAATGTCGTTCATATTTTA-G
1 AATATTTCTTAATTTAAAAATGTCGTTCATATTTTAGG
71861166 AATATTTCTTAATTTAAAAATGTCGTTCATATTTTAGG
1 AATATTTCTTAATTTAAAAATGTCGTTCATATTTTAGG
71861204 AGATATTT
1 A-ATATTT
71861212 AGATCATGGC
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
37 36 0.82
38 2 0.05
39 6 0.14
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.48
Consensus pattern (38 bp):
AATATTTCTTAATTTAAAAATGTCGTTCATATTTTAGG
Found at i:71864883 original size:6 final size:6
Alignment explanation
Indices: 71864874--71864937 Score: 105
Period size: 6 Copynumber: 11.0 Consensus size: 6
71864864 AGGTGAAATT
71864874 AATAAA AATAAA AAT-AA AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
71864921 AAT-AA AATAAA ATTAAA
1 AATAAA AATAAA AATAAA
71864938 CATCATCATT
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
5 10 0.18
6 45 0.82
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:71864894 original size:11 final size:11
Alignment explanation
Indices: 71864878--71864937 Score: 93
Period size: 11 Copynumber: 5.3 Consensus size: 11
71864868 GAAATTAATA
71864878 AAAATAAAAAT
1 AAAATAAAAAT
71864889 AAAATAAAAAT
1 AAAATAAAAAT
71864900 AAAAATAAAAAT
1 -AAAATAAAAAT
71864912 AAAAATAAAAAT
1 -AAAATAAAAAT
*
71864924 AAAATAAAATT
1 AAAATAAAAAT
71864935 AAA
1 AAA
71864938 CATCATCATT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
11 24 0.51
12 23 0.49
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:71864896 original size:17 final size:17
Alignment explanation
Indices: 71864874--71864937 Score: 110
Period size: 17 Copynumber: 3.7 Consensus size: 17
71864864 AGGTGAAATT
71864874 AATAAAAATAAAAATAA
1 AATAAAAATAAAAATAA
71864891 AATAAAAATAAAAATAAA
1 AATAAAAATAAAAAT-AA
71864909 AATAAAAATAAAAATAA
1 AATAAAAATAAAAATAA
*
71864926 AATAAAATTAAA
1 AATAAAAATAAA
71864938 CATCATCATT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
17 28 0.62
18 17 0.38
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (17 bp):
AATAAAAATAAAAATAA
Found at i:71867581 original size:93 final size:93
Alignment explanation
Indices: 71867468--71867641 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
71867458 GCCCATAAGT
* *
71867468 GAACTTGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71867533 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
71867561 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71867626 CGAGTTCGGATGCCTA
66 CGAGCTCGGATGCCTA
71867642 AATATCCTAG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71867635 original size:46 final size:46
Alignment explanation
Indices: 71867460--71867635 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
71867450 TGTAACCCGC
* *
71867460 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
71867506 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
71867552 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71867599 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
71867636 TGCCTAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 68 0.62
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:71876336 original size:24 final size:25
Alignment explanation
Indices: 71876283--71876337 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
71876273 TTCTTTACAT
*
71876283 ATGGCTATTCGAAGCTTCCCAATTA
1 ATGGCTATTCGAAGCTACCCAATTA
* *
71876308 ATGGCTCTTCGGAGCTACCC-ATTA
1 ATGGCTATTCGAAGCTACCCAATTA
*
71876332 TTGGCT
1 ATGGCT
71876338 TGCATGAGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (25 bp):
ATGGCTATTCGAAGCTACCCAATTA
Found at i:71877032 original size:29 final size:29
Alignment explanation
Indices: 71876993--71877062 Score: 122
Period size: 29 Copynumber: 2.4 Consensus size: 29
71876983 AACTTTGGTA
*
71876993 TAATGGAATGTATAGGTTAATTTGGCCAT
1 TAATGGCATGTATAGGTTAATTTGGCCAT
*
71877022 TGATGGCATGTATAGGTTAATTTGGCCAT
1 TAATGGCATGTATAGGTTAATTTGGCCAT
71877051 TAATGGCATGTA
1 TAATGGCATGTA
71877063 AATGTTTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.37
Consensus pattern (29 bp):
TAATGGCATGTATAGGTTAATTTGGCCAT
Found at i:71877644 original size:52 final size:52
Alignment explanation
Indices: 71877579--71877688 Score: 177
Period size: 52 Copynumber: 2.1 Consensus size: 52
71877569 CTTGGTTGTT
*
71877579 TGACCCTTATACCTACACATC-GCCTATCACACGGGCGTGTAACTTGGCTATG
1 TGACCCCTATACCTACACA-CAGCCTATCACACGGGCGTGTAACTTGGCTATG
* *
71877631 TGACCCCTGTACCTACACACAGCCTATCACACGGGCGTGTGACTTGGCTATG
1 TGACCCCTATACCTACACACAGCCTATCACACGGGCGTGTAACTTGGCTATG
71877683 TGACCC
1 TGACCC
71877689 AAGTCAGAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
51 1 0.02
52 53 0.98
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.25
Consensus pattern (52 bp):
TGACCCCTATACCTACACACAGCCTATCACACGGGCGTGTAACTTGGCTATG
Found at i:71888614 original size:2 final size:2
Alignment explanation
Indices: 71888607--71888634 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
71888597 TGGAATATTA
71888607 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71888635 GTATGTATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71890608 original size:23 final size:22
Alignment explanation
Indices: 71890578--71890657 Score: 56
Period size: 23 Copynumber: 3.4 Consensus size: 22
71890568 AAGCCACTTT
71890578 ATTGAATGTGTAAGAGCCTTGA
1 ATTGAATGTGTAAGAGCCTTGA
* *
71890600 ATTGTAATG-GTTAAATTGAACAACTT-T
1 ATTG-AATGTG-T-AA--GAGC--CTTGA
71890627 ATTGAATGTGTAAGAGCCTTGA
1 ATTGAATGTGTAAGAGCCTTGA
71890649 ATTGTAATG
1 ATTG-AATG
71890658 GTTAAATTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 19
0.66 0.06 0.28
Matches are distributed among these distances:
21 3 0.07
22 9 0.20
23 12 0.27
24 2 0.05
25 2 0.05
26 8 0.18
27 5 0.11
28 3 0.07
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (22 bp):
ATTGAATGTGTAAGAGCCTTGA
Found at i:71890626 original size:49 final size:49
Alignment explanation
Indices: 71890573--71890669 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
71890563 TTGAAAAGCC
71890573 ACTTTATTGAATGTGTAAGAGCCTTGAATTGTAATGGTTAAATTGAACA
1 ACTTTATTGAATGTGTAAGAGCCTTGAATTGTAATGGTTAAATTGAACA
71890622 ACTTTATTGAATGTGTAAGAGCCTTGAATTGTAATGGTTAAATTGAAC
1 ACTTTATTGAATGTGTAAGAGCCTTGAATTGTAATGGTTAAATTGAAC
71890670 TTATTAAACA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (49 bp):
ACTTTATTGAATGTGTAAGAGCCTTGAATTGTAATGGTTAAATTGAACA
Found at i:71892584 original size:15 final size:15
Alignment explanation
Indices: 71892564--71892606 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
71892554 GGTATTGTAA
71892564 CTTGGATTTCTGAAT
1 CTTGGATTTCTGAAT
**
71892579 CTTGGAAGTTTCTTTAT
1 CTTGG-A-TTTCTGAAT
71892596 CTTGGATTTCT
1 CTTGGATTTCT
71892607 TTGTCTCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 10 0.42
16 2 0.08
17 12 0.50
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (15 bp):
CTTGGATTTCTGAAT
Found at i:71892607 original size:15 final size:15
Alignment explanation
Indices: 71892564--71892608 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
71892554 GGTATTGTAA
**
71892564 CTTGGATTTCTGAAT
1 CTTGGATTTCTTTAT
71892579 CTTGGAAGTTTCTTTAT
1 CTTGG-A-TTTCTTTAT
71892596 CTTGGATTTCTTT
1 CTTGGATTTCTTT
71892609 GTCTCGAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 12 0.46
16 2 0.08
17 12 0.46
ACGTcount: A:0.16, C:0.13, G:0.18, T:0.53
Consensus pattern (15 bp):
CTTGGATTTCTTTAT
Found at i:71897659 original size:71 final size:71
Alignment explanation
Indices: 71897575--71897738 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
71897565 CGATTTGTCT
71897575 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
71897640 CTTTCA
66 CTTTCA
* *
71897646 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
71897711 CTTTCA
66 CTTTCA
71897717 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
71897739 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:71897776 original size:71 final size:70
Alignment explanation
Indices: 71897575--71897772 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
71897565 CGATTTGTCT
* * * * *
71897575 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71897640 CTTTCA
65 CTTTCA
* * * *
71897646 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71897711 CTTTCA
65 CTTTCA
* *
71897717 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
71897773 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:71904731 original size:70 final size:71
Alignment explanation
Indices: 71904648--71904810 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
71904638 CGATTTGTCT
71904648 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71904712 CTTTCA
66 CTTTCA
*
71904718 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71904783 CTTTCA
66 CTTTCA
71904789 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
71904811 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:71904848 original size:71 final size:70
Alignment explanation
Indices: 71904648--71904844 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
71904638 CGATTTGTCT
* * * *
71904648 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71904712 CTTTCA
65 CTTTCA
* * * *
71904718 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71904783 CTTTCA
65 CTTTCA
* *
71904789 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
71904845 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:71912919 original size:46 final size:45
Alignment explanation
Indices: 71912861--71913025 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 45
71912851 TGATACGAGT
*
71912861 GCTAGCGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGATGTAA
* * *
71912907 GCTAGTGTAAGACATGTCTGGGACATGCGTCGGCTACAATATG-ATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGTA-A
* * * * *
71912953 G-TCAGTGTAAGACCATGTCTGGGACATGACTTCGACTTGAGATATGA
1 GCT-AGTGTAAGA-CATGTCTGGGACATG-CATCGGCTCGAGATGTAA
* *
71913000 GCCAGTGTAAGACTGTGTCTGGGACA
1 GCTAGTGTAAGAC-ATGTCTGGGACA
71913026 GGGCATTGGC
Statistics
Matches: 98, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
45 4 0.04
46 48 0.49
47 40 0.41
48 6 0.06
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTAA
Found at i:71913006 original size:47 final size:45
Alignment explanation
Indices: 71912867--71913025 Score: 149
Period size: 47 Copynumber: 3.4 Consensus size: 45
71912857 GAGTGCTAGC
* * * * *
71912867 GTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCTAGT
1 GTAAGACATGTCTGGGACATGCATC-GACTAGAGATATGAGCCAGT
* * * *
71912913 GTAAGACATGTCTGGGACATGCGTCGGCTACA-ATATGATAGTCAGT
1 GTAAGACATGTCTGGGACATGCATCGACTAGAGATATG--AGCCAGT
* *
71912959 GTAAGACCATGTCTGGGACATGACTTCGACTTGAGATATGAGCCAGT
1 GTAAGA-CATGTCTGGGACATG-CATCGACTAGAGATATGAGCCAGT
*
71913006 GTAAGACTGTGTCTGGGACA
1 GTAAGAC-ATGTCTGGGACA
71913026 GGGCATTGGC
Statistics
Matches: 93, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
44 3 0.03
45 4 0.04
46 36 0.39
47 38 0.41
48 7 0.08
49 5 0.05
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
GTAAGACATGTCTGGGACATGCATCGACTAGAGATATGAGCCAGT
Found at i:71914242 original size:21 final size:21
Alignment explanation
Indices: 71914203--71914243 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
71914193 TCAAATTGAT
71914203 CACACGAGCATGTTGCCCCTTC
1 CACACGAGCA-GTTGCCCCTTC
71914225 CACACGAGC-GTATGCCCCT
1 CACACGAGCAGT-TGCCCCT
71914244 GTGTTGAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 7 0.39
22 9 0.50
ACGTcount: A:0.20, C:0.41, G:0.20, T:0.20
Consensus pattern (21 bp):
CACACGAGCAGTTGCCCCTTC
Found at i:71916400 original size:16 final size:17
Alignment explanation
Indices: 71916369--71916402 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
71916359 AAGCATTTTT
71916369 ATGCTTAGTAAGTCTCA
1 ATGCTTAGTAAGTCTCA
71916386 ATGCTTAGT-AGTCTCA
1 ATGCTTAGTAAGTCTCA
71916402 A
1 A
71916403 GCAATAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (17 bp):
ATGCTTAGTAAGTCTCA
Found at i:71916745 original size:40 final size:39
Alignment explanation
Indices: 71916700--71916908 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 39
71916690 CGGAATACAA
*
71916700 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71916740 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71916780 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
71916820 CCGGATGTAGTCACTAGCACAAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAA-TGCCTTCGGGTCTTAGC
** * * *
71916861 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
71916901 CCGGATAT
1 CCGGATAT
71916909 CATTCAATTG
Statistics
Matches: 144, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 108 0.75
41 35 0.24
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71916840 original size:80 final size:82
Alignment explanation
Indices: 71916700--71916906 Score: 251
Period size: 81 Copynumber: 2.6 Consensus size: 82
71916690 CGGAATACAA
* * *
71916700 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAA-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
71916763 TGCCTTCGGGTATTAGC
66 TGCCTTCGGGTATTAAC
* *
71916780 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
71916843 TTGCCTTCGGGTCTTAAC
65 TTGCCTTCGGGTATTAAC
** * ** * *
71916861 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
71916907 ATCATTCAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 52 0.48
81 54 0.50
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (82 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
TGCCTTCGGGTATTAAC
Found at i:71924817 original size:40 final size:39
Alignment explanation
Indices: 71924772--71924979 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
71924762 CGGAATACAA
*
71924772 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71924812 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71924852 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
71924892 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
71924932 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
71924972 CCGGATAT
1 CCGGATAT
71924980 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71924912 original size:80 final size:81
Alignment explanation
Indices: 71924772--71924977 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
71924762 CGGAATACAA
* * *
71924772 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
71924836 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
71924852 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
71924915 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
71924932 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
71924978 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:71928494 original size:50 final size:51
Alignment explanation
Indices: 71928426--71928554 Score: 161
Period size: 50 Copynumber: 2.5 Consensus size: 51
71928416 AATTATCCGG
* *
71928426 TACACGTAGTAGCCTGCACTTAGTACTAAAAATGTGACCTAA-CCATCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTAAAAACGTGACCGAAGCCATCTGA
* * * ** *
71928476 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCTGG
1 TACACGTAGTAGCCTGCACTTAGTACTAAAAACGTGACCGAAGCCATCTGA
* *
71928527 TACGCATAGTAGCCTGCACTTAGTACTA
1 TACACGTAGTAGCCTGCACTTAGTACTA
71928555 CACATGCGAC
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 37 0.54
51 31 0.46
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACTTAGTACTAAAAACGTGACCGAAGCCATCTGA
Found at i:71928566 original size:101 final size:99
Alignment explanation
Indices: 71928383--71928566 Score: 253
Period size: 101 Copynumber: 1.8 Consensus size: 99
71928373 CTGGTACGCA
* *
71928383 TAGTAGCCTGCACTTAGTATTACACATGCAACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
71928448 GTACTAAAAATGTGACCTAACCATCTGATACACG
66 GTACTAAAAATGCGACCTAACCATCTGATACACG
* * * *
71928482 TAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGTTATCTGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCCGGTACACATAGTAGCCTGCAC
* *
71928546 TTAGTACTACACATGCGACCT
63 TTAGTACTAAAAATGCGACCT
71928567 CACAATAGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
99 25 0.34
100 4 0.05
101 44 0.60
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTAAAAATGCGACCTAACCATCTGATACACG
Found at i:71934144 original size:49 final size:50
Alignment explanation
Indices: 71934084--71934223 Score: 167
Period size: 51 Copynumber: 2.8 Consensus size: 50
71934074 AAGCTATCTG
* *
71934084 GTACGCATAGTAGCCTGCACTTGGTACTACACATGCGACCAA-TTATCCG-
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTTAT-CGA
* * * *
71934133 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAAGTTATCGA
* * *
71934184 GTACGCATAGTAGCCTGTATTTAGTACTACACATGCGACC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
71934224 TTACAATAGA
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
49 33 0.44
50 6 0.08
51 36 0.48
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTTATCGA
Found at i:71934208 original size:51 final size:49
Alignment explanation
Indices: 71934078--71934223 Score: 168
Period size: 49 Copynumber: 2.9 Consensus size: 49
71934068 TAGCCAAAGC
* * *
71934078 TATCTGGTACGCATAGTAGCCTGCACTTGGTACTACACATGCGACCAAT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
71934127 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
71934178 TAT-CGAGTACGCATAGTAGCCTGTATTTAGTACTACACATGCGACC
1 TATCCG-GTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
71934224 TTACAATAGA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
49 38 0.47
50 6 0.08
51 36 0.45
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (49 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:71937410 original size:31 final size:31
Alignment explanation
Indices: 71937374--71937437 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
71937364 TCGTTTAATG
71937374 AATTTAATGTAATCCTTGGGATGGATTGGTT
1 AATTTAATGTAATCCTTGGGATGGATTGGTT
71937405 AATTTAATGTAATCCTTGGGATGGATTGGTT
1 AATTTAATGTAATCCTTGGGATGGATTGGTT
71937436 AA
1 AA
71937438 CTTCTCATGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (31 bp):
AATTTAATGTAATCCTTGGGATGGATTGGTT
Found at i:71939684 original size:40 final size:39
Alignment explanation
Indices: 71939594--71939778 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
71939584 TCGAATGATG
* * * * *
71939594 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
71939634 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
71939674 TCTGGGCTAAGCCCGAAGGCATTGGTGCTAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
71939713 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
*
71939754 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
71939779 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 35 0.29
40 73 0.61
41 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71939732 original size:79 final size:81
Alignment explanation
Indices: 71939595--71939776 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
71939585 CGAATGATGT
* * *
71939595 CCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
71939659 GTGCGAGTTACTA-ATT
66 GTGCGAGTTACTATA-A
* * * **
71939675 CTGGGCTAAG-CCCGAAGGCATTGGTGCT-AGTTACTAAATCCGGGTTAAG-TCCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCATT
71939737 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
71939754 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
71939777 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 55 0.63
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:71939800 original size:79 final size:78
Alignment explanation
Indices: 71939631--71939811 Score: 188
Period size: 79 Copynumber: 2.3 Consensus size: 78
71939621 CTAAGTGACC
* * *
71939631 ATATCCGGACTAAGATCC-GAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCA
1 ATATCCGG-TTAAG-TCCTGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
** *
71939695 TTGGTGCTAGTTACT
64 TTGGAACGAGTTACT
* *
71939710 AAATCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGC
1 ATATCC-GGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
71939774 ATTTGAACGAG-TAGCT
63 ATTGGAACGAGTTA-CT
* *
71939790 ATATCCGGTTAAATTCTGAAGG
1 ATATCCGGTTAAGTCCTGAAGG
71939812 TACGTGATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
78 5 0.06
79 55 0.65
80 25 0.29
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (78 bp):
ATATCCGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Done.