Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 233 of 438
Found at i:71952224 original size:42 final size:40
Alignment explanation
Indices: 71952128--71952225 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 40
71952118 TCATACAATG
*
71952128 GCAACTCCCAGACACGGTCTTACATGTAATCAAATATCGAT
1 GCAACTCCCAGACACGGTCTTACATGAAATCAAATA-CGAT
* *
71952169 GCCACTTTCCCAGACAGGGTCTTACATGAAATCAAATACGAT
1 GCAAC--TCCCAGACACGGTCTTACATGAAATCAAATACGAT
71952211 GTCAACATCCCAGAC
1 G-CAAC-TCCCAGAC
71952226 GTGGCCTTAG
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
41 4 0.08
42 13 0.27
43 32 0.65
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (40 bp):
GCAACTCCCAGACACGGTCTTACATGAAATCAAATACGAT
Found at i:71956064 original size:13 final size:13
Alignment explanation
Indices: 71956046--71956073 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71956036 ACAAAATTGG
71956046 AAAAATGATAAAT
1 AAAAATGATAAAT
71956059 AAAAATGATAAAT
1 AAAAATGATAAAT
71956072 AA
1 AA
71956074 TAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (13 bp):
AAAAATGATAAAT
Found at i:71960195 original size:20 final size:21
Alignment explanation
Indices: 71960150--71960196 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
71960140 GTAAGCTCGG
71960150 TTGAGCTCAAACAAGCTGAAA
1 TTGAGCTCAAACAAGCTGAAA
* **
71960171 -CGAGCTCAAATGAGCT-AAA
1 TTGAGCTCAAACAAGCTGAAA
71960190 TTGAGCT
1 TTGAGCT
71960197 GGACGGAGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (21 bp):
TTGAGCTCAAACAAGCTGAAA
Found at i:71966937 original size:42 final size:42
Alignment explanation
Indices: 71966852--71966980 Score: 109
Period size: 42 Copynumber: 3.1 Consensus size: 42
71966842 TCTCACATAT
* ** ** *
71966852 ACGAAATCACATATC-AATGCCGCATCCCAGACACAGTCATAC
1 ACGAAATCTCATA-CGAATGCCATATCCCAGACATGGTCTTAC
*
71966894 ACGAAATCTCATACCGAA-GCCATATCCCAGATATGGTCTTAC
1 ACGAAATCTCATA-CGAATGCCATATCCCAGACATGGTCTTAC
** ** * *
71966936 ACGGGATCTCATATTAATGTCATGTCCCAGACATGGTCTTAC
1 ACGAAATCTCATACGAATGCCATATCCCAGACATGGTCTTAC
71966978 ACG
1 ACG
71966981 TATCACAATG
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
41 2 0.03
42 66 0.94
43 2 0.03
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.23
Consensus pattern (42 bp):
ACGAAATCTCATACGAATGCCATATCCCAGACATGGTCTTAC
Found at i:71967037 original size:37 final size:37
Alignment explanation
Indices: 71966968--71967091 Score: 162
Period size: 37 Copynumber: 3.4 Consensus size: 37
71966958 TGTCCCAGAC
*
71966968 ATGGTCTTACACGT-ATCACAATGCCATAGCCCAGCT
1 ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
* * * *
71967004 ACGGTCTTACATGTCCTCACGATGCCATAGCCCAACT
1 ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
* *
71967041 ATGGTCTTACACG-CAATTACGATGCCATAACCCAGCT
1 ATGGTCTTACACGTC-ATCACGATGCCATAGCCCAGCT
71967078 ATGGTCTTACACGT
1 ATGGTCTTACACGT
71967092 ACTCACATGT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
36 13 0.18
37 61 0.82
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (37 bp):
ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
Found at i:71970302 original size:8 final size:8
Alignment explanation
Indices: 71970289--71970315 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
71970279 TTTCATTTCA
71970289 TTCCACAT
1 TTCCACAT
71970297 TTCCACAT
1 TTCCACAT
71970305 TTCCACAT
1 TTCCACAT
71970313 TTC
1 TTC
71970316 TCAACTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.37, G:0.00, T:0.41
Consensus pattern (8 bp):
TTCCACAT
Found at i:71978234 original size:71 final size:70
Alignment explanation
Indices: 71978146--71978308 Score: 317
Period size: 71 Copynumber: 2.3 Consensus size: 70
71978136 GAGATGTATC
71978146 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTG-
71978211 AGGACA
65 AGGACA
71978217 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71978282 GGACA
66 GGACA
71978287 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71978309 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 28 0.30
71 64 0.70
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (70 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
GGACA
Found at i:71984627 original size:41 final size:41
Alignment explanation
Indices: 71984582--71984699 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
71984572 TGAAAGATAA
71984582 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
71984623 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71984653 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71984694 ATGTAG
1 ATGTAG
71984700 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:71984638 original size:71 final size:71
Alignment explanation
Indices: 71984550--71984713 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71984540 GAGATGTATC
71984550 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71984615 AGGACA
66 AGGACA
71984621 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71984686 AGGACA
66 AGGACA
71984692 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71984714 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:71991034 original size:41 final size:41
Alignment explanation
Indices: 71990989--71991106 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
71990979 TGAAAGATAA
71990989 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
71991030 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71991060 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71991101 ATGTAG
1 ATGTAG
71991107 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:71991045 original size:71 final size:71
Alignment explanation
Indices: 71990957--71991120 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71990947 GAGATGTATC
71990957 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71991022 AGGACA
66 AGGACA
71991028 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71991093 AGGACA
66 AGGACA
71991099 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71991121 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:71993189 original size:68 final size:67
Alignment explanation
Indices: 71993117--71993266 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
71993107 CATCATGTGT
* * * *
71993117 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
71993179 ATGTAG
62 ATGTAG
** * *
71993185 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
71993250 AG
66 AG
71993252 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
71993267 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:71993222 original size:64 final size:64
Alignment explanation
Indices: 71993141--71993324 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
71993131 AGACATTATG
* *
71993141 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
71993205 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71993270 AA
63 AA
* * * *
71993272 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
71993325 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71999133 original size:39 final size:39
Alignment explanation
Indices: 71999080--71999203 Score: 169
Period size: 39 Copynumber: 3.2 Consensus size: 39
71999070 GGACTTTAGC
* * * *
71999080 CCGGACATATTTCCAACACGTAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCTTAAGT
*
71999119 CCGGTTATAATTCCAGCACATAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCTTAAGT
*
71999158 CCGGATATAATTCCAGCACATAGCCTGCGGATCC-TAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGA-CCTTAAGT
*
71999197 CCAGATA
1 CCGGATA
71999204 AACATCACTG
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
39 74 0.97
40 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTACGGACCTTAAGT
Found at i:72003752 original size:42 final size:42
Alignment explanation
Indices: 72003678--72003779 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
72003668 CGAAGTCTCA
* * * * *
72003678 CATATACGAAATCACATATCGATGCCGCATCCCAGACACGGT
1 CATACACGAAATCTCATACCGAAGCCACATCCCAGACACGGT
* * *
72003720 CATACACGAAATCTCATACCGAAGCCATATCCCAGATATGGT
1 CATACACGAAATCTCATACCGAAGCCACATCCCAGACACGGT
* *
72003762 CTTACACGTAATCTCATA
1 CATACACGAAATCTCATA
72003780 TCGATGCCGA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (42 bp):
CATACACGAAATCTCATACCGAAGCCACATCCCAGACACGGT
Found at i:72003835 original size:48 final size:48
Alignment explanation
Indices: 72003744--72003835 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
72003734 CATACCGAAG
*
72003744 CCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCGATT
1 CCATATCCCAGATATGGTCTTACACGTAATCTCATATCAATGCCGATT
* *
72003792 CCATATCCCAGATATGGTCTTACACAG-GATCTCATATTAATGCC
1 CCATATCCCAGATATGGTCTTACAC-GTAATCTCATATCAATGCC
72003836 ATGTCCCAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 39 0.98
49 1 0.03
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (48 bp):
CCATATCCCAGATATGGTCTTACACGTAATCTCATATCAATGCCGATT
Found at i:72003916 original size:37 final size:37
Alignment explanation
Indices: 72003831--72003970 Score: 171
Period size: 37 Copynumber: 3.8 Consensus size: 37
72003821 TCTCATATTA
*
72003831 ATGCCAT-GTCCCAGAC-ATGGTCTTACACGT-ATCACA
1 ATGCCATAG-CCCAG-CTATGGTCTTACACGTCATCACG
* *
72003867 ATGCCATAGCCCAGCTATGGTCTTACATGTCCTCACG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTCATCACG
* *
72003904 ATGCCATAGCCCAACTATGGTCTTACACG-CTATTACG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTC-ATCACG
*
72003941 ATGCCATAACCCAGCTATGGTCTTACACGT
1 ATGCCATAGCCCAGCTATGGTCTTACACGT
72003971 ACTCAAATGT
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
35 1 0.01
36 26 0.29
37 63 0.70
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (37 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGTCATCACG
Found at i:72003961 original size:74 final size:73
Alignment explanation
Indices: 72003831--72003967 Score: 206
Period size: 74 Copynumber: 1.9 Consensus size: 73
72003821 TCTCATATTA
*
72003831 ATGCCATGTCCCAGACATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATGGTCTTACATG
1 ATGCCATGTCCCAGACATGGTCTTACACGTATCACAATGCCATAACCCAGCTATGGTCTTACATG
72003896 TCCTCACG
66 TCCTCACG
* *
72003904 ATGCCATAG-CCCA-ACTATGGTCTTACACGCTATTACGATGCCATAACCCAGCTATGGTCTTAC
1 ATGCCAT-GTCCCAGAC-ATGGTCTTACACG-TATCACAATGCCATAACCCAGCTATGGTCTTAC
72003967 A
63 A
72003968 CGTACTCAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
72 2 0.03
73 24 0.41
74 32 0.55
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (73 bp):
ATGCCATGTCCCAGACATGGTCTTACACGTATCACAATGCCATAACCCAGCTATGGTCTTACATG
TCCTCACG
Found at i:72005413 original size:29 final size:29
Alignment explanation
Indices: 72005379--72005481 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
72005369 TAATCAGCCG
** *
72005379 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
72005408 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
72005437 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
72005466 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72005482 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:72013456 original size:29 final size:29
Alignment explanation
Indices: 72013422--72013524 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
72013412 TAATCAGCCG
** *
72013422 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
72013451 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
72013480 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
72013509 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72013525 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:72017124 original size:11 final size:11
Alignment explanation
Indices: 72017108--72017138 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
72017098 AGAAAAATTT
72017108 TATTTTTATTA
1 TATTTTTATTA
72017119 TATTTTTATTA
1 TATTTTTATTA
72017130 TATTTTTAT
1 TATTTTTAT
72017139 AGTCTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TATTTTTATTA
Found at i:72018638 original size:68 final size:64
Alignment explanation
Indices: 72018522--72018781 Score: 215
Period size: 68 Copynumber: 4.0 Consensus size: 64
72018512 TGGATGATAC
* ** * * *
72018522 AGATGATATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTA
1 AGAT-ATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA
72018585 CG
63 CG
*
72018587 AGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCT
1 AG--A-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCT
72018652 ACG
62 ACG
* * * * * *
72018655 GGATATATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
*
72018720 TG
63 CG
* * * *
72018722 AGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTCCACCATGT-GTACAAGAGAGCT
1 AGATATA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCT
72018782 GAACTATATG
Statistics
Matches: 159, Mismatches: 25, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 20 0.13
64 25 0.16
65 5 0.03
66 22 0.14
67 34 0.21
68 51 0.32
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:72028547 original size:16 final size:17
Alignment explanation
Indices: 72028526--72028559 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
72028516 AACAAATCAG
*
72028526 AGAAAAAGATG-AAGAA
1 AGAAAAAAATGAAAGAA
72028542 AGAAAAAAATGAAAGAA
1 AGAAAAAAATGAAAGAA
72028559 A
1 A
72028560 ATTAATCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.06
Consensus pattern (17 bp):
AGAAAAAAATGAAAGAA
Found at i:72041781 original size:15 final size:15
Alignment explanation
Indices: 72041761--72041792 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
72041751 GTGCATTTGG
*
72041761 AAATGTAAAGGGTAA
1 AAATGTAAAGGGCAA
72041776 AAATGTAAAGGGCAA
1 AAATGTAAAGGGCAA
72041791 AA
1 AA
72041793 GCTATAGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.25, T:0.16
Consensus pattern (15 bp):
AAATGTAAAGGGCAA
Found at i:72045795 original size:46 final size:47
Alignment explanation
Indices: 72045735--72046008 Score: 353
Period size: 46 Copynumber: 6.0 Consensus size: 47
72045725 TTTGACATGA
* * * * * * *
72045735 TGCCATAGTGTCTTTAAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
** * *
72045781 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
72045827 TGCCATGGTATTTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
72045873 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
* * *
72045919 TGTCATGGTATCTTTCAACCATTGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
72045965 TGCCATGATATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAG
72046009 AGAGCACACT
Statistics
Matches: 206, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
45 5 0.02
46 201 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:72048103 original size:11 final size:11
Alignment explanation
Indices: 72048087--72048134 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
72048077 CTTTATATAC
72048087 TAATAAAATAA
1 TAATAAAATAA
*
72048098 TAATAAAATATCT
1 TAATAAAATA--A
* *
72048111 TATTAAAATAT
1 TAATAAAATAA
72048122 TAATAAAATAA
1 TAATAAAATAA
72048133 TA
1 TA
72048135 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:72049073 original size:42 final size:42
Alignment explanation
Indices: 72049026--72049118 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
72049016 CGTGCCTTTA
72049026 GCCCGTGTGCAACACTGACTTTAAAACACGACCATGACACAC
1 GCCCGTGTGCAACACTGACTTTAAAACACGACCATGACACAC
* *
72049068 GCCCGTGTACAACACTGACTTTAAAACACGGCCATGACACAC
1 GCCCGTGTGCAACACTGACTTTAAAACACGACCATGACACAC
72049110 GCCCGTGTG
1 GCCCGTGTG
72049119 GCCTACCCGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.17
Consensus pattern (42 bp):
GCCCGTGTGCAACACTGACTTTAAAACACGACCATGACACAC
Found at i:72050076 original size:44 final size:45
Alignment explanation
Indices: 72050008--72050178 Score: 195
Period size: 44 Copynumber: 3.7 Consensus size: 45
72049998 TATACGTGCT
* * * *
72050008 GATGCATGTCCCGGACATGCCTTACACTAGCAC-GA-CTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTC-TAGCC
*
72050052 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTA-GCC
* *
72050098 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGT-GCCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCTAG-CC
*
72050146 GATGTATGTCCCAGACATGTCTTACACTGGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
72050179 ACAAGAAATC
Statistics
Matches: 111, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
44 30 0.27
45 3 0.03
46 24 0.22
47 28 0.25
48 24 0.22
49 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAGCC
Found at i:72050172 original size:138 final size:142
Alignment explanation
Indices: 72049906--72050178 Score: 321
Period size: 140 Copynumber: 1.9 Consensus size: 142
72049896 GGGATAAGTT
*
72049906 GCCGATGCCATGTCCCAGACATGGTCTCACATAGGCTATCATCATCAAGGCCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTCACATAGGCTATCATCATCAACGCCGATGCCATGTCCC
* * * *
72049971 AGGCATGGTCTTATACTAACTCTAGTATATACGTGCTGATGCATGTCCCGGACATGCCTTACACT
66 AGACATGGTCTTACACTAACTCTAGTATATA-GTGCCGATGCATGTCCCAGACATGCCTTACACT
72050036 AGCACGACTCTTA
130 AGCACGACTCTTA
* * *
72050049 GCCGATG-CATGTCCCAGACAT-GTCTTACACT-GGC-ACTCATC-TCTACGCTGATGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTCACA-TAGGCTA-TCATCATCAACGCCGATGCCATGTC
* * *
72050109 CCAGACATGGTCTTACACTGGCACTC-A-TA-AT-GTGCCCGATGTATGTCCCAGACATGTCTTA
64 CCAGACATGGTCTTACACT--AACTCTAGTATATAGTG-CCGATGCATGTCCCAGACATGCCTTA
*
72050170 CACTGGCAC
126 CACTAGCAC
72050179 ACAAGAAATC
Statistics
Matches: 113, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
137 3 0.03
138 30 0.27
139 2 0.02
140 36 0.32
141 16 0.14
142 19 0.17
143 7 0.06
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (142 bp):
GCCGATGCCATGTCCCAGACATGGTCTCACATAGGCTATCATCATCAACGCCGATGCCATGTCCC
AGACATGGTCTTACACTAACTCTAGTATATAGTGCCGATGCATGTCCCAGACATGCCTTACACTA
GCACGACTCTTA
Found at i:72051641 original size:41 final size:43
Alignment explanation
Indices: 72051559--72051642 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
72051549 AGGGTAAATC
* * * *
72051559 CAACAACCCATGTTTATCTTTTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTAAAATTCTTTTTT
72051602 CAACAACCCAAGATTATCTTCTCCT-TTTTAAAATT-TTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTAAAATTCTTTTTT
72051643 AAGATAAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 6 0.16
42 9 0.24
43 22 0.59
ACGTcount: A:0.25, C:0.23, G:0.02, T:0.50
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTCTCCTCTTTTAAAATTCTTTTTT
Found at i:72065548 original size:28 final size:28
Alignment explanation
Indices: 72065483--72065581 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
72065473 TCATGAATTG
* * *
72065483 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
72065512 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
72065540 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
72065568 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72065582 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:72072939 original size:28 final size:28
Alignment explanation
Indices: 72072874--72072972 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
72072864 TCATGAATTG
* * *
72072874 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
72072903 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
72072931 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
72072959 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72072973 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:72076319 original size:40 final size:39
Alignment explanation
Indices: 72076154--72076337 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
72076144 AAATTGAATG
* * *
72076154 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
72076194 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
72076234 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
72076274 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
72076313 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
72076338 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:72076362 original size:80 final size:81
Alignment explanation
Indices: 72076194--72076382 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
72076184 GCTGGAAATT
* * * *
72076194 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
72076259 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
72076275 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
72076338 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
72076354 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
72076383 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:72081997 original size:30 final size:30
Alignment explanation
Indices: 72081963--72082052 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
72081953 TATAATGGCA
72081963 TGTATAGGGTGCTTTGTGATGGTATTATGG
1 TGTATAGGGTGCTTTGTGATGGTATTATGG
**
72081993 TGTAT---GTG-TTAAT-A-GCGTA-T-TGG
1 TGTATAGGGTGCTTTGTGATG-GTATTATGG
72082016 CATGTATAGGGTGCTTTGTGATGGTATTATGG
1 --TGTATAGGGTGCTTTGTGATGGTATTATGG
72082048 TGTAT
1 TGTAT
72082053 GTGTTAATAG
Statistics
Matches: 45, Mismatches: 4, Indels: 22
0.63 0.06 0.31
Matches are distributed among these distances:
23 3 0.07
24 2 0.04
25 9 0.20
26 3 0.07
27 3 0.07
28 3 0.07
29 3 0.07
30 14 0.31
31 2 0.04
32 3 0.07
ACGTcount: A:0.19, C:0.04, G:0.33, T:0.43
Consensus pattern (30 bp):
TGTATAGGGTGCTTTGTGATGGTATTATGG
Found at i:72082042 original size:55 final size:55
Alignment explanation
Indices: 72081958--72082077 Score: 231
Period size: 55 Copynumber: 2.2 Consensus size: 55
72081948 AGGTTTATAA
72081958 TGGCATGTATAGGGTGCTTTGTGATGGTATTATGGTGTATGTGTTAATAGCGTAT
1 TGGCATGTATAGGGTGCTTTGTGATGGTATTATGGTGTATGTGTTAATAGCGTAT
*
72082013 TGGCATGTATAGGGTGCTTTGTGATGGTATTATGGTGTATGTGTTAATAGTGTAT
1 TGGCATGTATAGGGTGCTTTGTGATGGTATTATGGTGTATGTGTTAATAGCGTAT
72082068 TGGCATGTAT
1 TGGCATGTAT
72082078 TAGCTTTGGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.20, C:0.05, G:0.33, T:0.42
Consensus pattern (55 bp):
TGGCATGTATAGGGTGCTTTGTGATGGTATTATGGTGTATGTGTTAATAGCGTAT
Found at i:72090539 original size:44 final size:44
Alignment explanation
Indices: 72090455--72090539 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
72090445 ACACGTATTG
* *
72090455 CATCCATTATGAACTAGGACCAATTCAACGAGTTCGGATGCTCC
1 CATCCATTATGAACTAGGACCAACTCAACGAGTTCAGATGCTCC
*
72090499 CATCCA-TAGTGAACTCGGACCAACTCAACGAGATT-AGATGC
1 CATCCATTA-TGAACTAGGACCAACTCAACGAG-TTCAGATGC
72090540 CTCATATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 2 0.06
44 32 0.89
45 2 0.06
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (44 bp):
CATCCATTATGAACTAGGACCAACTCAACGAGTTCAGATGCTCC
Found at i:72092107 original size:29 final size:28
Alignment explanation
Indices: 72092073--72092175 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72092063 TACTCAATCA
*
72092073 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
72092102 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
72092131 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
72092160 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72092176 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:72095536 original size:54 final size:54
Alignment explanation
Indices: 72095456--72095562 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
72095446 CCACTTTATA
72095456 ATACATCACTGGAAATCATGAATTTCTTGCCCATTGTAGGCCAAGACAAATCTT
1 ATACATCACTGGAAATCATGAATTTCTTGCCCATTGTAGGCCAAGACAAATCTT
*
72095510 ATACATCACTGGAAATCATGAATTTCTTGCCCATTGTAGGCCAAGCCAAATCT
1 ATACATCACTGGAAATCATGAATTTCTTGCCCATTGTAGGCCAAGACAAATCT
72095563 AACATTTCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (54 bp):
ATACATCACTGGAAATCATGAATTTCTTGCCCATTGTAGGCCAAGACAAATCTT
Found at i:72096870 original size:17 final size:17
Alignment explanation
Indices: 72096848--72096880 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
72096838 TAACTGTGAC
72096848 ATGGCATAGTTTGAATA
1 ATGGCATAGTTTGAATA
72096865 ATGGCATAGTTTGAAT
1 ATGGCATAGTTTGAAT
72096881 GATCTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (17 bp):
ATGGCATAGTTTGAATA
Found at i:72101509 original size:29 final size:28
Alignment explanation
Indices: 72101475--72101577 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72101465 TACTCAATCA
*
72101475 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
72101504 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
72101533 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
72101562 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72101578 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:72108247 original size:21 final size:21
Alignment explanation
Indices: 72108221--72108264 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
72108211 GTGTGAAAGT
*
72108221 TTTAAGCTTTGATTTAGTAAA
1 TTTAAGCTTCGATTTAGTAAA
72108242 TTTAAGCTTCGATTTAGTAAA
1 TTTAAGCTTCGATTTAGTAAA
72108263 TT
1 TT
72108265 GCATGTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.48
Consensus pattern (21 bp):
TTTAAGCTTCGATTTAGTAAA
Found at i:72109946 original size:79 final size:79
Alignment explanation
Indices: 72109810--72110033 Score: 310
Period size: 79 Copynumber: 2.8 Consensus size: 79
72109800 TCGAATGATG
* * *
72109810 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGACCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGACCGAAGGCATTT
72109874 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
* *
72109889 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCGAAGGCATTT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGACCGAAGGCATTT
72109953 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
* * * *
72109968 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAG-ACCGAAGGCATT
72110032 TG
64 TG
72110034 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 1 0.01
79 106 0.82
80 22 0.17
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGACCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:72110040 original size:40 final size:40
Alignment explanation
Indices: 72109810--72110033 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
72109800 TCGAATGATG
* * * *
72109810 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
72109850 TCCGGACTAAGA-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
72109889 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
72109929 TCCGGACTAAGAT-CGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
72109968 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
72110009 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
72110034 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 8, Indels: 12
0.89 0.04 0.06
Matches are distributed among these distances:
38 1 0.01
39 63 0.37
40 104 0.61
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72110055 original size:79 final size:78
Alignment explanation
Indices: 72109817--72110066 Score: 285
Period size: 79 Copynumber: 3.2 Consensus size: 78
72109807 ATGTCCGGGC
* * * *
72109817 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGACCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGTCCGAAGGCATTTGTGCGAG
*
72109881 TTACTAAATCCGGAC
65 TTACTAAATCCGG-T
72109896 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGACTAAG-TCCGAAGGCATTTGTGCG
72109958 AGTTACTAAATCCGGGT
63 AGTTACTAAATCC-GGT
* * **
72109975 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGT-CCGAAGGCATTTGTGCGAG
*
72110040 -TAGCTATATCCGGT
65 TTA-CTAAATCCGGT
* *
72110054 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
72110067 TACGTGATTC
Statistics
Matches: 149, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
78 3 0.02
79 111 0.74
80 35 0.23
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGTCCGAAGGCATTTGTGCGAGT
TACTAAATCCGGT
Found at i:72125677 original size:39 final size:39
Alignment explanation
Indices: 72125626--72125807 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 39
72125616 GGGCTAAGTC
* * *
72125626 CCGAAGGC-TTTGTGCTAAGTGACTATAT-CGGACTAAGA
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGA
72125664 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGA
*
72125703 TCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGA
** *
72125742 TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 -CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAG-A
*
72125783 CCGAAGGCATTTGTGTGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTA
72125808 TAACCGCTAT
Statistics
Matches: 131, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 17 0.13
39 55 0.42
40 59 0.45
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGA
Found at i:72125759 original size:40 final size:40
Alignment explanation
Indices: 72125613--72125807 Score: 258
Period size: 39 Copynumber: 5.0 Consensus size: 40
72125603 TCGAATGATG
* * * *
72125613 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
72125653 T-CGGACTAAGA-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
72125691 TCCGGACTAAGAT-CGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
72125730 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
72125770 TCCGGGTTAAG-TCCCGAAGGCATTTGTGTGAGTTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
72125808 TAACCGCTAT
Statistics
Matches: 142, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
38 17 0.12
39 65 0.46
40 60 0.42
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72125769 original size:79 final size:77
Alignment explanation
Indices: 72125613--72125807 Score: 259
Period size: 79 Copynumber: 2.5 Consensus size: 77
72125603 TCGAATGATG
* * * *
72125613 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCGGACTAAGACCGAAGGCATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCGGACTAAGACCGAAGGCATTTG
72125677 TGCGAGTTACTAAA
64 TGCGAGTTACTAAA
72125691 TCCGGACTAAGAT-CGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAAT-CGGACTAAGA-CCGAAGGCATTT
72125755 GTGCGAGTTACTAAA
63 GTGCGAGTTACTAAA
** *
72125770 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTA
72125808 TAACCGCTAT
Statistics
Matches: 104, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
77 16 0.15
78 28 0.27
79 37 0.36
80 23 0.22
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (77 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCGGACTAAGACCGAAGGCATTTGTG
CGAGTTACTAAA
Found at i:72127277 original size:60 final size:60
Alignment explanation
Indices: 72127184--72127325 Score: 275
Period size: 60 Copynumber: 2.4 Consensus size: 60
72127174 TAGGGTCTGA
*
72127184 ATTTAGCCTGGACTGGTAATTCAGATCCGATCTCAATAAGGGTGTTTGTCGTTATAAGGG
1 ATTTAGCCTAGACTGGTAATTCAGATCCGATCTCAATAAGGGTGTTTGTCGTTATAAGGG
72127244 ATTTAGCCTAGACTGGTAATTCAGATCCGATCTCAATAAGGGTGTTTGTCGTTATAAGGG
1 ATTTAGCCTAGACTGGTAATTCAGATCCGATCTCAATAAGGGTGTTTGTCGTTATAAGGG
72127304 ATTTAGCCTAGACTGGTAATTC
1 ATTTAGCCTAGACTGGTAATTC
72127326 TAACAACACT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 81 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (60 bp):
ATTTAGCCTAGACTGGTAATTCAGATCCGATCTCAATAAGGGTGTTTGTCGTTATAAGGG
Found at i:72134318 original size:43 final size:43
Alignment explanation
Indices: 72134270--72134421 Score: 259
Period size: 43 Copynumber: 3.5 Consensus size: 43
72134260 GCTGGTATTA
*
72134270 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
72134313 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
72134356 TATTCGGGCCTTCGTTCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
72134399 TATTCGGGCCTTTGAGCCTAGCA
1 TATTCGGGCCTTCGTGCCTAGCA
72134422 TGCTATAATG
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:72137469 original size:13 final size:13
Alignment explanation
Indices: 72137451--72137476 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72137441 AATATATTTC
72137451 ACCTAAACCAAAA
1 ACCTAAACCAAAA
72137464 ACCTAAACCAAAA
1 ACCTAAACCAAAA
72137477 CAAATAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCTAAACCAAAA
Found at i:72138239 original size:36 final size:35
Alignment explanation
Indices: 72138176--72138264 Score: 92
Period size: 36 Copynumber: 2.5 Consensus size: 35
72138166 AATATACACA
* *
72138176 TTCAAAATAACTTCACATAAAACCGAATATATATAAG
1 TTCAATATAACTTCACATAAAACCGAATA-AT-CAAG
** *
72138213 TTCAATATAA-TTCACATGTAATCGAATAATCAAG
1 TTCAATATAACTTCACATAAAACCGAATAATCAAG
72138247 TTCAATATAAGCTT-ACAT
1 TTCAATATAA-CTTCACAT
72138265 GTACTTACCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
34 13 0.29
35 6 0.13
36 17 0.38
37 9 0.20
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.31
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAACCGAATAATCAAG
Found at i:72141882 original size:19 final size:20
Alignment explanation
Indices: 72141858--72141895 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72141848 GGTACCACCA
72141858 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72141877 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72141896 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72142191 original size:46 final size:45
Alignment explanation
Indices: 72142124--72142292 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
72142114 CGCCCCTAAG
* *
72142124 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAA
* **
72142170 TGAACTCGGACTCAACTCAACGAGTTC-GA-A-TGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTG-C-A--TCCAT-AAA
* * *
72142217 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACA-TTGCATCCATAAA
72142263 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
72142293 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 2 0.02
45 1 0.01
46 58 0.57
47 31 0.30
48 2 0.02
49 2 0.02
50 1 0.01
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAA
Found at i:72142235 original size:93 final size:93
Alignment explanation
Indices: 72142125--72142295 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
72142115 GCCCCTAAGT
* *
72142125 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
72142190 CGAGTTCGAATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
* * *
72142218 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
72142283 CGAGTTCGGATGC
66 CGAGTTCGAATGC
72142296 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:72144724 original size:24 final size:24
Alignment explanation
Indices: 72144692--72144754 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
72144682 AATCTCAAAT
72144692 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72144716 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72144740 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
72144755 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:72166880 original size:69 final size:70
Alignment explanation
Indices: 72166748--72166880 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
72166738 TAGTTTATTA
* * * *
72166748 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
72166813 CTTAG
66 CTTAG
72166818 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
72166881 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:72168252 original size:47 final size:47
Alignment explanation
Indices: 72168201--72168495 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
72168191 ACAAGATATG
*
72168201 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
72168248 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
72168295 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
72168342 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
72168389 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
72168436 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
72168483 TAAATGTGATAAG
1 TATATGTGATAAG
72168496 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:72171280 original size:40 final size:40
Alignment explanation
Indices: 72170881--72171268 Score: 535
Period size: 40 Copynumber: 9.7 Consensus size: 40
72170871 AGGTCTCGAC
72170881 GATG-ATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
72170920 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* **
72170960 GATGTATCCGGGATAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
** ** *
72171000 GATGTATCCGGAATAAGTTCTGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
72171040 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
*
72171080 GATGTATCCGGGCCAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
** **
72171120 GATGTATCCGGAATAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* ***
72171160 GATGTATCCGGGATAAATTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* * * * *
72171200 GATATATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* * * *
72171240 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGCCCCGAAGAGCA
72171269 ATCATGCTGG
Statistics
Matches: 318, Mismatches: 30, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 4 0.01
40 314 0.99
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
Found at i:72173457 original size:69 final size:70
Alignment explanation
Indices: 72173325--72173457 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
72173315 TAGTTTATTA
* * * *
72173325 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
72173390 CTTAG
66 CTTAG
72173395 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
72173458 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:72174829 original size:47 final size:47
Alignment explanation
Indices: 72174778--72175072 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
72174768 ACAAGATATG
*
72174778 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
72174825 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
72174872 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
72174919 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
72174966 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
72175013 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
72175060 TAAATGTGATAAG
1 TATATGTGATAAG
72175073 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:72177855 original size:40 final size:40
Alignment explanation
Indices: 72177456--72177843 Score: 526
Period size: 40 Copynumber: 9.7 Consensus size: 40
72177446 AGGTCTCGAC
72177456 GATG-ATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
72177495 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* **
72177535 GATGTATCCGGGATAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
** ** *
72177575 GATGTATCCGGAATAAGTTCTGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
72177615 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
*
72177655 GATGTATCCGGGCCAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* ** **
72177695 GATGTATCCAGAATAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* ***
72177735 GATGTATCCGGGATAAATTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* * * * *
72177775 GATATATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* * * *
72177815 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGCCCCGAAGAGCA
72177844 ATCATGCTGG
Statistics
Matches: 316, Mismatches: 32, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 4 0.01
40 312 0.99
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
Found at i:72180031 original size:69 final size:70
Alignment explanation
Indices: 72179899--72180031 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
72179889 TAGTTTATTA
* * * *
72179899 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
72179964 CTTAG
66 CTTAG
72179969 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
72180032 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:72181056 original size:24 final size:24
Alignment explanation
Indices: 72181023--72181137 Score: 151
Period size: 24 Copynumber: 4.8 Consensus size: 24
72181013 AACTCCTGCT
*
72181023 CTTTGATCAGCTCCTAAAT-CTCAAC
1 CTTT-ATCAGCTCCTAAATCCTC-TC
*
72181048 CTTTATCAGCTCCTAAATCTTCTC
1 CTTTATCAGCTCCTAAATCCTCTC
*
72181072 CTTTATTAGCTCCTAAATCCTCTC
1 CTTTATCAGCTCCTAAATCCTCTC
*
72181096 CCTTATCAGCTCCTAAATCCTCTC
1 CTTTATCAGCTCCTAAATCCTCTC
* *
72181120 CCTTATCAGCTCATAAAT
1 CTTTATCAGCTCCTAAAT
72181138 TTTCTCCTGA
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
24 76 0.93
25 6 0.07
ACGTcount: A:0.24, C:0.34, G:0.05, T:0.37
Consensus pattern (24 bp):
CTTTATCAGCTCCTAAATCCTCTC
Found at i:72189011 original size:24 final size:24
Alignment explanation
Indices: 72188978--72189053 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
72188968 CAACTCCTGT
* *
72188978 TCCTTGATCAGCTCTTAAATCTTC
1 TCCTTTATCAGCTCCTAAATCTTC
*
72189002 TCCTTTATCAGCTCCTAAATCCTC
1 TCCTTTATCAGCTCCTAAATCTTC
*
72189026 TCCCTTATCAGCTCCTAAATCTTC
1 TCCTTTATCAGCTCCTAAATCTTC
72189050 TCCT
1 TCCT
72189054 GACAGCCTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.20, C:0.36, G:0.05, T:0.39
Consensus pattern (24 bp):
TCCTTTATCAGCTCCTAAATCTTC
Found at i:72190226 original size:27 final size:28
Alignment explanation
Indices: 72190174--72190229 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
72190164 GTGATGTGTG
72190174 AGTAAGACCATGGCTTCGATATATATGTGCT
1 AGTAAGACCATGGCTTCG--A-ATATGTGCT
72190205 AGTAAGACCATGGCTTCG-ATATGTG
1 AGTAAGACCATGGCTTCGAATATGTG
72190230 ATTACATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 7 0.28
31 18 0.72
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (28 bp):
AGTAAGACCATGGCTTCGAATATGTGCT
Found at i:72196039 original size:33 final size:34
Alignment explanation
Indices: 72195965--72196049 Score: 97
Period size: 32 Copynumber: 2.6 Consensus size: 34
72195955 TTATAAAACC
* *
72195965 TAAAGATAAAGTAAAAA-CAGTATTAAAGAGAAA
1 TAAAGATAAAATAAAAAGAAGTATTAAAGAGAAA
*
72195998 TAAA-ATAAAATAAAAAGTAAGT-TTAAA-ATAAA
1 TAAAGATAAAATAAAAAG-AAGTATTAAAGAGAAA
72196030 TAAAGATAAAAGTAAAAAGA
1 TAAAGATAAAA-TAAAAAGA
72196050 TAGAAATAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
32 19 0.42
33 16 0.36
34 10 0.22
ACGTcount: A:0.67, C:0.01, G:0.12, T:0.20
Consensus pattern (34 bp):
TAAAGATAAAATAAAAAGAAGTATTAAAGAGAAA
Found at i:72210736 original size:17 final size:18
Alignment explanation
Indices: 72210694--72210742 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
72210684 AGTTGAAAAG
72210694 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
72210713 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
72210730 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
72210743 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:72211629 original size:40 final size:40
Alignment explanation
Indices: 72211563--72211729 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
72211553 AAATTGAATG
* * *
72211563 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
72211602 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
72211642 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
72211682 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
72211722 ATATCCGG
1 ATATCCGG
72211730 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72213468 original size:27 final size:28
Alignment explanation
Indices: 72213412--72213481 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
72213402 AAACTTGTAC
72213412 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72213440 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
72213467 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72213482 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72213492 original size:27 final size:27
Alignment explanation
Indices: 72213412--72213493 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
72213402 AAACTTGTAC
* *
72213412 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
72213440 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
72213467 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
72213494 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:72219133 original size:15 final size:16
Alignment explanation
Indices: 72219103--72219137 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
72219093 TATACATATG
72219103 TCATGCAAAAATTATA
1 TCATGCAAAAATTATA
*
72219119 TCATGC-AATATTATA
1 TCATGCAAAAATTATA
72219134 TCAT
1 TCAT
72219138 AAATCTCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (16 bp):
TCATGCAAAAATTATA
Found at i:72222558 original size:13 final size:13
Alignment explanation
Indices: 72222540--72222566 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72222530 ATATGATATA
72222540 TTGTTACATGCAT
1 TTGTTACATGCAT
72222553 TTGTTACATGCAT
1 TTGTTACATGCAT
72222566 T
1 T
72222567 CGTGATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48
Consensus pattern (13 bp):
TTGTTACATGCAT
Found at i:72224088 original size:28 final size:27
Alignment explanation
Indices: 72224025--72224092 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
72224015 ATAGTGAGTC
*
72224025 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
72224052 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
72224080 CGCACACTTAGTG
1 CGCACACTTAGTG
72224093 TTGTACAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:72229287 original size:17 final size:17
Alignment explanation
Indices: 72229265--72229303 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
72229255 GGGGTCATGT
72229265 GGGCCTAATAGGCCTAC
1 GGGCCTAATAGGCCTAC
*
72229282 GGGCCTAATGGGCCTAC
1 GGGCCTAATAGGCCTAC
72229299 GGGCC
1 GGGCC
72229304 CAATTGGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.18, C:0.31, G:0.36, T:0.15
Consensus pattern (17 bp):
GGGCCTAATAGGCCTAC
Found at i:72230025 original size:27 final size:27
Alignment explanation
Indices: 72229479--72230008 Score: 655
Period size: 27 Copynumber: 19.6 Consensus size: 27
72229469 TTAGTTTACC
*
72229479 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
72229506 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
72229533 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* **
72229560 AAATTACAAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
72229587 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
72229614 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
72229641 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
72229668 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
72229695 AAATTACCAAAATACCCTTGGTTGGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * * *
72229722 AAATTACTAGAATATCGTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
72229749 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
72229776 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
72229803 AAATCACCAAAATGCCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
72229830 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
72229857 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
72229884 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
72229911 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
72229938 AAAATACCAAAATACCCCTGCTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
72229965 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
72229992 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
72230009 CTAATTTTTG
Statistics
Matches: 422, Mismatches: 81, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 422 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:72230035 original size:54 final size:54
Alignment explanation
Indices: 72229479--72230008 Score: 763
Period size: 54 Copynumber: 9.8 Consensus size: 54
72229469 TTAGTTTACC
*
72229479 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * *
72229533 AAATCACCAAAATACCCTTGGTTTGTAAAATTACAAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
72229587 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
72229641 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * * *
72229695 AAATTACCAAAATACCCTTGGTTGGTAAAATTACTAGAATATCGTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
72229749 AAATCACCAAAATACCCCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
72229803 AAATCACCAAAATGCCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
72229857 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * *
72229911 AAATTACCAAAATACCCCTAGTTTGTAAAAATACCAAAATACCCCTGCTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
72229965 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
72230009 CTAATTTTTG
Statistics
Matches: 430, Mismatches: 46, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 430 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:72230046 original size:108 final size:108
Alignment explanation
Indices: 72229479--72230144 Score: 719
Period size: 108 Copynumber: 6.2 Consensus size: 108
72229469 TTAGTTTACC
*
72229479 AAATTACCAAAATACCC-CTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAA
* * * *
72229543 AATACCCTTGGTTTGTAAAATTACAAAAATACCCTTGGTTTACA
65 AATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
72229587 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
*
72229652 ATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
66 ATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * *
72229695 AAATTACCAAAATACCCTTGGTTGGTAAAATTACTAGAATATCGTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
* * *
72229760 ATACCCCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
66 ATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * *
72229803 AAATCACCAAAATGCCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAA
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAA
* *
72229867 AATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
65 AATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * * * *
72229911 AAATTACCAAAATACCC-CTAGTTTGTAAAAATACCAAAATACCCCTGCTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAA
* ** * *
72229975 AATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTTTG
65 AATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** ** * * * ** * *
72230019 AAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
* * * * **** * * *
72230084 GTACCTCT-GATTTATAGAATTACCGTTTTACCTTTGATTTACA
66 ATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
72230127 AAATTACCAAAATACCCT
1 AAATTACCAAAATACCCT
72230145 TGTAGGGTAG
Statistics
Matches: 483, Mismatches: 71, Indels: 8
0.86 0.13 0.01
Matches are distributed among these distances:
107 1 0.00
108 480 0.99
109 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (108 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
ATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:72230088 original size:27 final size:26
Alignment explanation
Indices: 72229479--72230107 Score: 369
Period size: 27 Copynumber: 23.3 Consensus size: 26
72229469 TTAGTTTACC
*
72229479 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * * *
72229506 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
* * *
72229533 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* * * **
72229560 AAATTACAAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
72229587 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* * * * *
72229614 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
72229641 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* * **
72229668 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
* * *
72229695 AAATTACCAAAATACCCTTGGTTGGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* * *** * *
72229722 AAATTACTAGAATATCGTTGGTTTATA
1 AAATTACCAAAATA-CCCCGATTTGTA
* *
72229749 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * * * *
72229776 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
* * *
72229803 AAATCACCAAAATGCCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* * **
72229830 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
*
72229857 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* * *
72229884 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC--CGATTTGTA
*
72229911 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* *
72229938 AAAATACCAAAATACCCCTGCTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
72229965 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* * *
72229992 AAATTACCAAAATACCCCTAATTTTTG
1 AAATTACCAAAATACCCC-GATTTGTA
** **
72230019 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
72230046 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* * *
72230073 AAATTACCAAAGTACCTCTGATTTATA
1 AAATTACCAAAATACC-CCGATTTGTA
*
72230100 GAATTACC
1 AAATTACC
72230108 GTTTTACCTT
Statistics
Matches: 478, Mismatches: 106, Indels: 36
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.00
27 473 0.99
28 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:72230372 original size:27 final size:27
Alignment explanation
Indices: 72230136--72230374 Score: 286
Period size: 27 Copynumber: 8.9 Consensus size: 27
72230126 AAAATTACCA
*
72230136 AAATACCCTTGTAGGGTAGAAATACCT-
1 AAATACCCTTGTAGGGTAGAATTA-CTG
* *
72230163 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACTG
* * *
72230190 AAATACCCCTATAGGGTAGAACTACTG
1 AAATACCCTTGTAGGGTAGAATTACTG
* *
72230217 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACTG
*
72230244 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACTG
* *
72230271 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACTG
* **
72230298 AAATACCCCTGTA-AATAGAATTACT-
1 AAATACCCTTGTAGGGTAGAATTACTG
*
72230323 AAATACCCTTGTAGAGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACTG
* * *
72230350 AGATACCTTTGTAGGGTAAAATTAC
1 AAATACCCTTGTAGGGTAGAATTAC
72230375 CATTTTACCC
Statistics
Matches: 186, Mismatches: 23, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
25 12 0.06
26 20 0.11
27 154 0.83
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACTG
Found at i:72230931 original size:31 final size:31
Alignment explanation
Indices: 72230896--72230981 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 31
72230886 TTGCATTCAC
72230896 ATTCTGATTTTGATTCTG-TTACCTGAT-A-CTG
1 ATTCTGATTTTGATTCTGATT--CT-ATCACCTG
* *
72230927 ATTCTGATTCTAATTCTGATTCTATCACCTG
1 ATTCTGATTTTGATTCTGATTCTATCACCTG
72230958 ATTCTGATTTTGATTCTGATTCTA
1 ATTCTGATTTTGATTCTGATTCTA
72230982 GTTCTGATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.04
30 3 0.06
31 41 0.85
32 2 0.04
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGATTCTATCACCTG
Found at i:72230935 original size:6 final size:6
Alignment explanation
Indices: 72230896--72230989 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
72230886 TTGCATTCAC
* * *
72230896 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
72230945 ATTCT- ATCACCTG ATTCTG ATTTTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
72230990 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.07
6 56 0.80
7 6 0.09
8 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:72230947 original size:37 final size:37
Alignment explanation
Indices: 72230896--72230980 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 37
72230886 TTGCATTCAC
* * *
72230896 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTATCACCTGATACTGATTCTG
* * *
72230933 ATTCTAATTCTGATTCTATCACCTGATTCTGATTTTG
1 ATTCTGATTCTGATTCTATCACCTGATACTGATTCTG
72230970 ATTCTGATTCT
1 ATTCTGATTCT
72230981 AGTTCTGATA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTATCACCTGATACTGATTCTG
Found at i:72244132 original size:27 final size:27
Alignment explanation
Indices: 72244101--72244162 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
72244091 CATCTGATAC
* *
72244101 TGATTCTG-TACTGGGCTTAGGCCCACT
1 TGATTCTGTTAATGGGC-TAGGCCCAAT
72244128 TGATTCTGTTAATGGGCTAGGCCCAAT
1 TGATTCTGTTAATGGGCTAGGCCCAAT
72244155 TGATTCTG
1 TGATTCTG
72244163 ATTAGGGCTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 25 0.78
28 7 0.22
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (27 bp):
TGATTCTGTTAATGGGCTAGGCCCAAT
Found at i:72247077 original size:40 final size:40
Alignment explanation
Indices: 72247032--72247199 Score: 182
Period size: 40 Copynumber: 4.2 Consensus size: 40
72247022 CGGAATACAA
72247032 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * * *
72247072 CCGGATATAACGACTCGCACAAATGCCTTCCGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
72247112 CCGGATATAACAACTTGCACGAATGCCTTCGGGTAC-TAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGT-CTTAGC
* *
72247152 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
72247192 CCGGATAT
1 CCGGATAT
72247200 CATTCAATTG
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
39 5 0.05
40 103 0.95
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:72247172 original size:80 final size:80
Alignment explanation
Indices: 72247032--72247199 Score: 216
Period size: 80 Copynumber: 2.1 Consensus size: 80
72247022 CGGAATACAA
* *
72247032 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
72247097 CCTTCCGGTATTAGC
66 CCTTCCGGTATTAAC
**
72247112 CCGGATATAACAACTTGCACGAATGCCTTCGGGTAC-TAGCCCGGATA-AA-GTCACTAGCACAA
1 CCGGATATAACAACACGCACGAATGCCTTCGGGT-CTTAGCCCGGATATAACG--ACTAGCACAA
* * *
72247174 TTGCCTTCGGGTCTTAAC
63 ATGCCTTCCGGTATTAAC
72247192 CCGGATAT
1 CCGGATAT
72247200 CATTCAATTG
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 73 0.95
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCCGGTATTAAC
Found at i:72249389 original size:40 final size:40
Alignment explanation
Indices: 72249313--72249496 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
72249303 CAAACTCAAG
* * * *
72249313 TGCCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAA
* *
72249352 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
*
72249392 AGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* *
72249432 TGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* *
72249472 TGCCCTCGGGACTTAACCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
72249497 CATTCGAATA
Statistics
Matches: 129, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 14 0.11
40 112 0.87
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
Found at i:72253781 original size:33 final size:33
Alignment explanation
Indices: 72253739--72253809 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
72253729 ACCAAGTCCT
72253739 TATACATGCTATACTCAAAATGATGAGACTAAC
1 TATACATGCTATACTCAAAATGATGAGACTAAC
*
72253772 TATACATGCTATACTCAAAATGATGAGACTAGC
1 TATACATGCTATACTCAAAATGATGAGACTAAC
72253805 TATAC
1 TATAC
72253810 CAAATATTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (33 bp):
TATACATGCTATACTCAAAATGATGAGACTAAC
Found at i:72259302 original size:23 final size:23
Alignment explanation
Indices: 72259270--72259332 Score: 76
Period size: 22 Copynumber: 2.8 Consensus size: 23
72259260 CCATAGCTCG
*
72259270 TATGACCTTACCGTTTCAACTCT
1 TATGAGCTTACCGTTTCAACTCT
*
72259293 TATGAGCTTACCG-TTCATCTCT
1 TATGAGCTTACCGTTTCAACTCT
*
72259315 TCA-AAGCTTACCGTTTCA
1 T-ATGAGCTTACCGTTTCA
72259333 GTCCTTCGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 18 0.51
23 17 0.49
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (23 bp):
TATGAGCTTACCGTTTCAACTCT
Found at i:72259597 original size:16 final size:16
Alignment explanation
Indices: 72259552--72259608 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
72259542 AAACATAAAG
72259552 TACATGTTACATGAAT
1 TACATGTTACATGAAT
* **
72259568 AATATACCTTACATGAAT
1 --TACATGTTACATGAAT
*
72259586 TACATGTTACATGGAT
1 TACATGTTACATGAAT
*
72259602 TATATGT
1 TACATGT
72259609 GTGACAGCCC
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
16 18 0.58
18 13 0.42
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (16 bp):
TACATGTTACATGAAT
Found at i:72261263 original size:39 final size:39
Alignment explanation
Indices: 72261209--72261371 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
72261199 TGTGAATGAA
72261209 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
72261248 TGTGCGAATTGTGATATCCGGGCTAAGCTCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
72261287 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
72261326 TGTGCGAGTTGTGATATCCGGGTTAAGTCCTGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
72261366 TGTGCG
1 TGTGCG
72261372 GGTTACCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:72270015 original size:28 final size:26
Alignment explanation
Indices: 72269955--72270015 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 26
72269945 TATATTTATA
* * *
72269955 ATTGAAATTTATATCTTGAATATTGT
1 ATTGAAATGTATATATTGAATATAGT
72269981 A-TG-AATGTATATATATGAATTATAGT
1 ATTGAAATGTATATAT-TGAA-TATAGT
72270007 ATTGAAATG
1 ATTGAAATG
72270016 CTTATTTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 9 0.32
25 6 0.21
26 7 0.25
27 2 0.07
28 4 0.14
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (26 bp):
ATTGAAATGTATATATTGAATATAGT
Found at i:72270170 original size:9 final size:9
Alignment explanation
Indices: 72270156--72270182 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
72270146 TCGTGATTAG
72270156 TATGAGGTT
1 TATGAGGTT
72270165 TATGAGGTT
1 TATGAGGTT
72270174 TATGAGGTT
1 TATGAGGTT
72270183 GGTTTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (9 bp):
TATGAGGTT
Found at i:72275606 original size:27 final size:26
Alignment explanation
Indices: 72275567--72275633 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 26
72275557 CTCTGCCATA
**
72275567 AATATCTGTTCTGGTGGTTCTACCAC
1 AATATCTGTTCTGGTGACTCTACCAC
**
72275593 AATATCTGTATCTGGTGACTCTGTCAC
1 AATATCTGT-TCTGGTGACTCTACCAC
72275620 AATATCTGTTCTGG
1 AATATCTGTTCTGG
72275634 CAGCCATGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 14 0.39
27 22 0.61
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (26 bp):
AATATCTGTTCTGGTGACTCTACCAC
Found at i:72288287 original size:30 final size:30
Alignment explanation
Indices: 72288253--72288313 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72288243 TCCTTAACTC
72288253 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
72288283 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
72288313 A
1 A
72288314 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:72291477 original size:39 final size:39
Alignment explanation
Indices: 72291346--72291536 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
72291336 GGATATAACG
* ** **
72291346 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
72291386 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
72291426 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
72291464 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
72291504 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
72291537 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:72291481 original size:78 final size:80
Alignment explanation
Indices: 72291386--72291536 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
72291376 GGTTATAGCG
* * * *
72291386 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
72291448 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
72291464 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
72291529 AGCCCGGA
66 AGCCCGGA
72291537 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:72299517 original size:39 final size:39
Alignment explanation
Indices: 72299386--72299576 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
72299376 GGATATAACG
* ** **
72299386 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
72299426 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
72299466 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
72299504 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
72299544 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
72299577 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:72299521 original size:78 final size:80
Alignment explanation
Indices: 72299426--72299576 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
72299416 GGTTATAGCG
* * * *
72299426 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
72299488 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
72299504 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
72299569 AGCCCGGA
66 AGCCCGGA
72299577 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:72304395 original size:28 final size:28
Alignment explanation
Indices: 72304326--72304426 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72304316 GACAAGATTG
* * * *
72304326 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72304356 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72304384 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72304413 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72304427 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72305808 original size:13 final size:13
Alignment explanation
Indices: 72305790--72305819 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
72305780 AATATTCGAT
72305790 AAGCTATTGTTGA
1 AAGCTATTGTTGA
*
72305803 AAGCTATTGTTGT
1 AAGCTATTGTTGA
72305816 AAGC
1 AAGC
72305820 AAATTCAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (13 bp):
AAGCTATTGTTGA
Found at i:72311424 original size:39 final size:39
Alignment explanation
Indices: 72311293--72311483 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
72311283 GGATATAACG
* ** **
72311293 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
72311333 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
72311373 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
72311411 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
72311451 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
72311484 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:72311428 original size:78 final size:80
Alignment explanation
Indices: 72311333--72311483 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
72311323 GGTTATAGCG
* * * *
72311333 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
72311395 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
72311411 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
72311476 AGCCCGGA
66 AGCCCGGA
72311484 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:72315902 original size:30 final size:30
Alignment explanation
Indices: 72315868--72315928 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72315858 TCATTAACTC
72315868 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
72315898 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
72315928 A
1 A
72315929 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:72328932 original size:43 final size:41
Alignment explanation
Indices: 72328772--72328932 Score: 112
Period size: 43 Copynumber: 3.8 Consensus size: 41
72328762 GATATGTGTT
* *
72328772 TTACGTGTAAGACCACGTTTGGGACATTGGCATCGACTTTTGTT
1 TTACGTGTAAGACCACGTCTGGGACA-TGGCATCGA-TTTTG-A
* ** * * *
72328816 TTA-GTGTAAGACAATATCTAGGACATCGGTATC-TTATTTGA
1 TTACGTGTAAGACCACGTCTGGGACAT-GGCATCGAT-TTTGA
* * *
72328857 TTTCGTATAAGACC-CTGTCTGGGATAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCAC-GTCTGGGACA-TGGCATCGAT-TTTGA
*
72328900 TTACATGTAAGACCACGTCTGGGACATAGGCAT
1 TTACGTGTAAGACCACGTCTGGGACAT-GGCAT
72328933 TGTATATGTT
Statistics
Matches: 87, Mismatches: 22, Indels: 17
0.69 0.17 0.13
Matches are distributed among these distances:
41 3 0.03
42 26 0.30
43 54 0.62
44 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (41 bp):
TTACGTGTAAGACCACGTCTGGGACATGGCATCGATTTTGA
Found at i:72334577 original size:17 final size:17
Alignment explanation
Indices: 72334555--72334589 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72334545 CCAAGATAGT
72334555 TTGAAAGTAGCTTCTGA
1 TTGAAAGTAGCTTCTGA
72334572 TTGAAAGTAGCTTCTGA
1 TTGAAAGTAGCTTCTGA
72334589 T
1 T
72334590 CGTCAGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (17 bp):
TTGAAAGTAGCTTCTGA
Found at i:72336376 original size:43 final size:44
Alignment explanation
Indices: 72336320--72336484 Score: 137
Period size: 43 Copynumber: 3.8 Consensus size: 44
72336310 ATCCGATATG
72336320 TGTTTTACGTGTAAGACCATGTCTGGGACATTGGCATCGACTTT
1 TGTTTTACGTGTAAGACCATGTCTGGGACATTGGCATCGACTTT
* * *
72336364 TGTTTTA-GTGTAAGACCATATCTAGGACATCGGCAT---CTTAT
1 TGTTTTACGTGTAAGACCATGTCTGGGACATTGGCATCGACTT-T
* * * * * *
72336405 CTGATTTA-GTATAAGACCCTGTCAGGGAAAGTGGCATCGA-TGTT
1 -TGTTTTACGTGTAAGACCATGTCTGGGACATTGGCATCGACT-TT
* * * *
72336449 TG-ATTACATGTAAGACCACGTCTGGGACATAGGCAT
1 TGTTTTACGTGTAAGACCATGTCTGGGACATTGGCAT
72336485 TGTATATGTT
Statistics
Matches: 93, Mismatches: 21, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
40 3 0.03
41 1 0.01
42 30 0.32
43 49 0.53
44 9 0.10
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (44 bp):
TGTTTTACGTGTAAGACCATGTCTGGGACATTGGCATCGACTTT
Found at i:72344144 original size:30 final size:30
Alignment explanation
Indices: 72344110--72344170 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72344100 TCCTTAACTC
*
72344110 AAACTTTGGGAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
72344140 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
72344170 A
1 A
72344171 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:72350858 original size:22 final size:22
Alignment explanation
Indices: 72350832--72350876 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
72350822 AATATAACTA
72350832 AATTAAATAAA-AAAATA-AAATT
1 AATTAAA-AAACAAAA-ACAAATT
72350854 AATTAAAAAACAAAAACAAATT
1 AATTAAAAAACAAAAACAAATT
72350876 A
1 A
72350877 CACCAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (22 bp):
AATTAAAAAACAAAAACAAATT
Found at i:72350861 original size:17 final size:18
Alignment explanation
Indices: 72350831--72350868 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
72350821 AAATATAACT
*
72350831 AAATTAAATAAAAAAATA
1 AAATTAAATAAAAAAACA
*
72350849 AAATT-AATTAAAAAACA
1 AAATTAAATAAAAAAACA
72350866 AAA
1 AAA
72350869 ACAAATTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (18 bp):
AAATTAAATAAAAAAACA
Found at i:72356276 original size:49 final size:50
Alignment explanation
Indices: 72356103--72356276 Score: 221
Period size: 49 Copynumber: 3.5 Consensus size: 50
72356093 ATGAACAAAT
* * *
72356103 GAGTTAC-TAATGCATGAC-TTCATTTAAAGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATT-ATTT-ATGATGCATAC-TTAACTAACATGA
* *
72356154 GAGTTACATAATACATGACATAATTTATGATGCAT-CTTAACTAACATGA
1 GAGTTACATAATGCATGACATTATTTATGATGCATACTTAACTAACATGA
*
72356203 GAGTTACATAATGCATGTCATTATTTATGATGCATAC-TAACTAACATGA
1 GAGTTACATAATGCATGACATTATTTATGATGCATACTTAACTAACATGA
* *
72356252 AAGTTACATAATGCATGACGTTATT
1 GAGTTACATAATGCATGACATTATT
72356277 AAATGCAAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
49 78 0.72
50 2 0.02
51 14 0.13
52 14 0.13
53 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (50 bp):
GAGTTACATAATGCATGACATTATTTATGATGCATACTTAACTAACATGA
Found at i:72359943 original size:39 final size:39
Alignment explanation
Indices: 72359900--72359977 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
72359890 TTTTGGAGTA
72359900 AACTGTAGGCCCAGATAACTGATCAAACAAATCTTCAAT
1 AACTGTAGGCCCAGATAACTGATCAAACAAATCTTCAAT
72359939 AACTGTAGGCCCAGATAACTGATCAAACAAATCTTCAAT
1 AACTGTAGGCCCAGATAACTGATCAAACAAATCTTCAAT
72359978 CATGGGCAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.23
Consensus pattern (39 bp):
AACTGTAGGCCCAGATAACTGATCAAACAAATCTTCAAT
Found at i:72362597 original size:30 final size:30
Alignment explanation
Indices: 72362563--72362623 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
72362553 TTCCCGAGCC
72362563 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
72362593 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
72362623 T
1 T
72362624 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:72365167 original size:40 final size:39
Alignment explanation
Indices: 72364977--72365160 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
72364967 CGAATGATGT
* * * * *
72364977 CCGGGCTAAGTCCCAAAGG-TTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
72365017 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
72365057 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
72365095 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72365136 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72365161 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72365183 original size:79 final size:79
Alignment explanation
Indices: 72365029--72365193 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
72365019 GGACTAAGAT
* **
72365029 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
*
72365094 ATCCGGGTTAAATC
66 ATCCGAGTTAAATC
* *
72365108 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT-AGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTCA-C
* *
72365171 TATATCC-AGTTAAATT
63 TAAATCCGAGTTAAATC
72365187 CCGAAGG
1 CCGAAGG
72365194 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
ATCCGAGTTAAATC
Found at i:72374599 original size:47 final size:47
Alignment explanation
Indices: 72374542--72374715 Score: 192
Period size: 47 Copynumber: 3.7 Consensus size: 47
72374532 TATATGTGCT
*
72374542 GATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATTATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATTATCGAGGCC
* * * * *
72374589 GATGCATGTCCCAGACATGTCTTACACGGGCATTCA-TCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATTATCGAGGCC
* * * *
72374635 AAGGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATTATCGAGGCC
* *
72374683 GATGTATGTCCCAGACATGTCTTACACTAGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
72374716 ATAAGTAATC
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
46 24 0.23
47 59 0.56
48 21 0.20
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATTATCGAGGCC
Found at i:72375428 original size:12 final size:12
Alignment explanation
Indices: 72375411--72375435 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72375401 CAAAAATGTA
72375411 AAAATCATCAAG
1 AAAATCATCAAG
72375423 AAAATCATCAAG
1 AAAATCATCAAG
72375435 A
1 A
72375436 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:72380592 original size:31 final size:31
Alignment explanation
Indices: 72380554--72380617 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
72380544 TTTACTATAT
*
72380554 GAAAAAAAGTTATAATCGTCAGGAATCGTCA
1 GAAAAAAAGTTATAATCATCAGGAATCGTCA
*
72380585 GAAAAAAATTTATAATCATCAGGAATCGTCA
1 GAAAAAAAGTTATAATCATCAGGAATCGTCA
72380616 GA
1 GA
72380618 CTATCAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.23
Consensus pattern (31 bp):
GAAAAAAAGTTATAATCATCAGGAATCGTCA
Found at i:72382419 original size:123 final size:122
Alignment explanation
Indices: 72382200--72382420 Score: 268
Period size: 124 Copynumber: 1.8 Consensus size: 122
72382190 GAATTATGTG
* * * * *
72382200 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATGCCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * **
72382265 TAAGTCCCGAAGGCGAATATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACGAATATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
72382322 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCC-
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
72382385 GGCTAAGCCCCGAAGAC-AATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACGAA-TATGCTAGAAATTATA
72382421 TCCGGGTTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
122 18 0.22
123 28 0.34
124 33 0.40
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACGAATATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:72382445 original size:40 final size:40
Alignment explanation
Indices: 72382379--72382529 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
72382369 AAATTGAATG
* * *
72382379 ATATCC-GGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
72382418 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * *
72382458 ACATCTGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
72382498 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
72382530 ACGTGGTTAT
Statistics
Matches: 87, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
39 9 0.10
40 76 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Done.