Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 234 of 438
Found at i:72382543 original size:40 final size:40
Alignment explanation
Indices: 72382416--72382545 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
72382406 ATGCTGGAAA
* * *
72382416 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * * ***
72382456 CTACATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
72382496 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
72382536 TTATATCCGG
1 TTATATCCGG
72382546 TTATATTCCG
Statistics
Matches: 70, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:72390464 original size:40 final size:40
Alignment explanation
Indices: 72390379--72390529 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
72390369 AATTGAATGA
* * * *
72390379 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
72390419 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
72390460 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
72390499 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
72390530 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:72390543 original size:40 final size:40
Alignment explanation
Indices: 72390416--72390545 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
72390406 ATGCTGGAAA
* * *
72390416 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
72390456 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
72390496 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
72390536 TTATATCCGG
1 TTATATCCGG
72390546 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:72390544 original size:80 final size:80
Alignment explanation
Indices: 72390378--72390545 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
72390368 AAATTGAATG
* *
72390378 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
72390443 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
72390458 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
72390521 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
72390538 ATATCCGG
1 ATATCCGG
72390546 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:72399718 original size:40 final size:40
Alignment explanation
Indices: 72399610--72399819 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72399600 CGGGATTTAA
* * * * *
72399610 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72399650 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72399690 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72399730 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72399770 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72399810 CCGGATATAT
1 CCGGATATAT
72399820 TTCAATGTTC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72414848 original size:40 final size:40
Alignment explanation
Indices: 72414721--72414850 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
72414711 TTGCTGGAAA
* *
72414721 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
72414761 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72414801 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72414841 TTATATCCGG
1 TTATATCCGG
72414851 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72422953 original size:40 final size:40
Alignment explanation
Indices: 72422826--72422955 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
72422816 ATGCTGGAAA
* *
72422826 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
72422866 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72422906 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72422946 TTATATCCGG
1 TTATATCCGG
72422956 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72426631 original size:27 final size:28
Alignment explanation
Indices: 72426574--72426643 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
72426564 AAACTTGTAC
*
72426574 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72426602 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
72426629 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72426644 GACACACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72428266 original size:33 final size:33
Alignment explanation
Indices: 72428181--72428267 Score: 94
Period size: 28 Copynumber: 2.8 Consensus size: 33
72428171 TCTGGGCTTT
* * * *
72428181 AGCCCTATACAATATCAGTACTGTCTGGGCCTT
1 AGCCCTATACAGTATCAGTACAGTGTGGGCCTA
72428214 AGCCCTATACAG--T-A--ACAGTGTGGGCCTA
1 AGCCCTATACAGTATCAGTACAGTGTGGGCCTA
*
72428242 AGCCCAATACAGTATCAGTACAGTGT
1 AGCCCTATACAGTATCAGTACAGTGT
72428268 AATGCAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
28 22 0.50
30 2 0.05
31 2 0.05
33 18 0.41
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (33 bp):
AGCCCTATACAGTATCAGTACAGTGTGGGCCTA
Found at i:72428455 original size:27 final size:26
Alignment explanation
Indices: 72428425--72428475 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
72428415 AAACAATAAA
72428425 TGTGGCAAAGCCACCAATATCAGTAAT
1 TGTGGCAAAGCCACCAATA-CAGTAAT
* * *
72428452 TGTGGTATAGCCACCAGTACAGTA
1 TGTGGCAAAGCCACCAATACAGTA
72428476 CTTCCTCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
TGTGGCAAAGCCACCAATACAGTAAT
Found at i:72445973 original size:20 final size:21
Alignment explanation
Indices: 72445948--72445988 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
72445938 ACACCTATTA
*
72445948 TTTATTTTTA-CTTTTTTTAT
1 TTTATTTTTATCTTTATTTAT
72445968 TTTATTTTTATCTTTATTTAT
1 TTTATTTTTATCTTTATTTAT
72445989 CTTTTGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTATTTTTATCTTTATTTAT
Found at i:72445983 original size:12 final size:12
Alignment explanation
Indices: 72445948--72445986 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
72445938 ACACCTATTA
72445948 TTTATTTTTA-C
1 TTTATTTTTATC
72445959 -TT-TTTTTAT-
1 TTTATTTTTATC
72445968 TTTATTTTTATC
1 TTTATTTTTATC
72445980 TTTATTT
1 TTTATTT
72445987 ATCTTTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
9 6 0.25
10 4 0.17
11 7 0.29
12 7 0.29
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTATTTTTATC
Found at i:72449335 original size:50 final size:50
Alignment explanation
Indices: 72449260--72449491 Score: 193
Period size: 50 Copynumber: 4.6 Consensus size: 50
72449250 TGAATACACG
* * *
72449260 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATACTATTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTTAAGTCACA
* * ** *
72449310 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATAACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-C-A-GACTGTTAAGTCACA
** * * * *
72449361 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACT-GTTAAGTCACA
** * * * * * *
72449411 TGTGTAGTACTAAGTAAAGGCTACTACGTGTATCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTTAAGTCACA
*
72449460 TGTGTAGTACTAAGTGCAGGCTATTATGTGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA
72449492 TAAGACAGCT
Statistics
Matches: 150, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 35 0.23
50 73 0.49
51 34 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTTAAGTCACA
Found at i:72449615 original size:27 final size:26
Alignment explanation
Indices: 72449585--72449636 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
72449575 GGGAAAATCG
72449585 ATAAAGTGGTAATATGTG-AAATTTATT
1 ATAAAGTGG--ATATGTGCAAATTTATT
*
72449612 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAATTTAT
72449637 GTTTATGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 7 0.30
26 8 0.35
27 8 0.35
ACGTcount: A:0.38, C:0.02, G:0.21, T:0.38
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAATTTATT
Found at i:72455717 original size:50 final size:49
Alignment explanation
Indices: 72455642--72455867 Score: 206
Period size: 50 Copynumber: 4.5 Consensus size: 49
72455632 TGAATACACG
* * * *
72455642 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATTTTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGA-TCACA
* * *
72455692 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-A-TGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG--TT-GATCACA
* * ** *
72455743 TGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGA-TGGCGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGA--TCACA
* * * * *
72455793 TGTGTAGTACTAAGTGTAGGCTACTACGTCTACCGGATTGTTGCTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGATCACA
*
72455842 TGTATAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
72455868 TGCATATCAG
Statistics
Matches: 144, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
48 2 0.01
49 28 0.19
50 71 0.49
51 42 0.29
52 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGATCACA
Found at i:72458810 original size:27 final size:27
Alignment explanation
Indices: 72458770--72458822 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
72458760 ATGTGCAAAA
*
72458770 CAGTAAATGTGGCAAAGCCACCAGTAT
1 CAGTAAATGAGGCAAAGCCACCAGTAT
* * *
72458797 CAGTAATTGAGGCATAGCGACCAGTA
1 CAGTAAATGAGGCAAAGCCACCAGTA
72458823 CAATACTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGTAAATGAGGCAAAGCCACCAGTAT
Found at i:72467082 original size:29 final size:30
Alignment explanation
Indices: 72467024--72467083 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72467014 TCCTTAACTC
*
72467024 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
72467054 AAACTTTTGCATATTTACACTTTT-CCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
72467083 A
1 A
72467084 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.42
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:72471126 original size:67 final size:64
Alignment explanation
Indices: 72471048--72471177 Score: 170
Period size: 64 Copynumber: 2.0 Consensus size: 64
72471038 CTAGCCAGTT
* * * * * *
72471048 TATCTCGTAGCTCTCTTTTCTACATGGTGTCCTTCACCTGGAATCACGCATGCGACCTAGCTACA
1 TATCTCATAGCTCTCTTGTCTACATGGTG---TGCACATAGAATCACCCATGCGACCTAGCTACA
72471113 TA
63 TA
*
72471115 TATCTCATAGCTCTCTTGTCTACATGGTGTGCACATAGTATCACCCATGCGACCTAGCTACAT
1 TATCTCATAGCTCTCTTGTCTACATGGTGTGCACATAGAATCACCCATGCGACCTAGCTACAT
72471178 CATAATGTCT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
64 29 0.52
67 27 0.48
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.32
Consensus pattern (64 bp):
TATCTCATAGCTCTCTTGTCTACATGGTGTGCACATAGAATCACCCATGCGACCTAGCTACATA
Found at i:72474575 original size:47 final size:46
Alignment explanation
Indices: 72474508--72474680 Score: 179
Period size: 47 Copynumber: 3.7 Consensus size: 46
72474498 GATTACTTAT
* * *
72474508 GTGCGAGTGTAAGACATGTCTGGGATATGCATCGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA
* * * * *
72474554 GTGCCAGCGTAAGACCATGTCTGGGACATGGTATCGACGTAGA-GATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATGATGA
* * *
72474602 GTGCTAGTGTAAGACATGCCTGGGACATGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGA
*
72474649 -TAGCCAGTGTAAGACGTGTCTGGGACATGCAT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCAT
72474681 TGGCTGAGAG
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
46 20 0.20
47 58 0.57
48 22 0.22
49 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA
Found at i:72474722 original size:91 final size:94
Alignment explanation
Indices: 72474513--72474725 Score: 249
Period size: 94 Copynumber: 2.3 Consensus size: 94
72474503 CTTATGTGCG
* *
72474513 AGTGTAAGACATGTCTGGGATATGCATCGGCCACATTATGAGTGCCAGCGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGTGCCAGCGTAAGACCATGTCTGG
* *
72474578 GACATGGTATCGACGTAGAGATGAGTGCT
66 GACATGGCATCGACGTAGAGATGAGTGAT
* * * *
72474607 AGTGTAAGACATGCCTGGGACATGCATCGGCCTCGATGATGA-TAGCCAGTGTAAGA-CGTGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGT-GCCAGCGTAAGACCATGTCT
* * *
72474670 GGGACAT-GCATTGGC-T-GAGA-GTTGTGAT
64 GGGACATGGCATCGACGTAGAGATG-AGTGAT
*
72474698 AGTGTAAAACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
72474726 AGCATGTATA
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
90 1 0.01
91 34 0.33
92 1 0.01
93 5 0.05
94 45 0.44
95 17 0.17
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGTGCCAGCGTAAGACCATGTCTGG
GACATGGCATCGACGTAGAGATGAGTGAT
Found at i:72482095 original size:47 final size:46
Alignment explanation
Indices: 72481983--72482251 Score: 181
Period size: 47 Copynumber: 5.7 Consensus size: 46
72481973 GATTACTTAT
* * * * **
72481983 GTGCCAGTGTAAGACATGTCTGGGAGAGGCATCGGCCACA-TTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-GACATAGAGATGA
72482029 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATAGAGATGA
* ** * * *
72482077 GTCCCAGTGTAAGACATGTCCAGGACATGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACATAGA-GATGA
* * * * *
72482124 -TAGCCAGTGTAAGACGTGCCTAGGACATGCATCGGC-T-GAGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGACATAGAGATG-A
* * * * *
72482168 GTGCTAGTGTAAGGCATGTCTGGGACATGCATC-AGCATGTATAAATAA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGA-CA--TAGAGATGA
* *
72482216 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
72482252 GCCTCTATGA
Statistics
Matches: 178, Mismatches: 29, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 29 0.16
45 3 0.02
46 26 0.15
47 64 0.36
48 36 0.20
49 14 0.08
50 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACATAGAGATGA
Found at i:72482150 original size:94 final size:93
Alignment explanation
Indices: 72481986--72482157 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 93
72481976 TACTTATGTG
** * * *
72481986 CCAGTGTAAGACATGTCTGGGAGAGGCATCGGCCACATTATGAGTGCCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCCAGGACAGGCATCGGCCACATGATGAGTGCCAGTGTAAGACCATGCCT
*
72482051 GGGACATGGCATCGACATAGAGATGAGTC
66 AGGACAT-GCATCGACATAGAGATGAGTC
* * *
72482080 CCAGTGTAAGACATGTCCAGGACATGCATCGGCCTCGATGATGA-TAGCCAGTGTAAGA-CGTGC
1 CCAGTGTAAGACATGTCCAGGACAGGCATCGGCCAC-ATGATGAGT-GCCAGTGTAAGACCATGC
72482143 CTAGGACATGCATCG
64 CTAGGACATGCATCG
72482158 GCTGAGAGTT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
93 6 0.09
94 43 0.64
95 18 0.27
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (93 bp):
CCAGTGTAAGACATGTCCAGGACAGGCATCGGCCACATGATGAGTGCCAGTGTAAGACCATGCCT
AGGACATGCATCGACATAGAGATGAGTC
Found at i:72482241 original size:49 final size:49
Alignment explanation
Indices: 72482170--72482348 Score: 164
Period size: 49 Copynumber: 3.7 Consensus size: 49
72482160 TGAGAGTTGT
* *
72482170 GCTAGTGTAAG-GCATGTCTGGGACAT-GCATCAGCATGTATAAATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCTAT-AATAAGA
* * * * *
72482218 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCTATAATAAGA
* * * * * * * *
72482267 GGTAGTATAATACCATGTCTGGGACATGGCATCGGCCTCTATGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCTATAATAAGA
* * * *
72482316 GGTAGTATAAGACCATGTCAGTGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
72482349 GGCAACTTAT
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
48 11 0.09
49 94 0.81
50 11 0.09
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCTATAATAAGA
Found at i:72482349 original size:49 final size:49
Alignment explanation
Indices: 72482220--72482351 Score: 228
Period size: 49 Copynumber: 2.7 Consensus size: 49
72482210 AAATAAGAGC
*
72482220 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
1 TAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
*
72482269 TAGTATAATACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
1 TAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
* *
72482318 TAGTATAAGACCATGTCAGTGACATGGCATCGGC
1 TAGTATAAGACCATGTCTGGGACATGGCATCGGC
72482352 AACTTATCCC
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 78 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (49 bp):
TAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
Found at i:72488615 original size:37 final size:37
Alignment explanation
Indices: 72488563--72488646 Score: 105
Period size: 37 Copynumber: 2.3 Consensus size: 37
72488553 TGTGAGCACG
* * * *
72488563 TGTATGACCATAGCTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCAAAGCTGGGCTATAGCATCGTAATCACA
* * *
72488600 TGTAAGACCAAAGCTGGGCTATAGCATTGTGATCCCA
1 TGTAAGACCAAAGCTGGGCTATAGCATCGTAATCACA
72488637 TGTAAGACCA
1 TGTAAGACCA
72488647 TGTCTGGGAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (37 bp):
TGTAAGACCAAAGCTGGGCTATAGCATCGTAATCACA
Found at i:72488688 original size:48 final size:48
Alignment explanation
Indices: 72488627--72488854 Score: 359
Period size: 48 Copynumber: 4.8 Consensus size: 48
72488617 GCTATAGCAT
*
72488627 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
72488675 TGTGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
72488723 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * *
72488771 TGTGATCCCATGTAAGACCATATCTGGGATATGGCGTTGGCATCGTTA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
72488819 TGTGAT-TCATGTAAGACCATGTTTAGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
72488855 CAATATGAGA
Statistics
Matches: 165, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 24 0.15
48 141 0.85
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:72491810 original size:39 final size:39
Alignment explanation
Indices: 72491756--72491898 Score: 223
Period size: 39 Copynumber: 3.6 Consensus size: 39
72491746 AATGTTCGAG
* *
72491756 TGATATCCAGGCTAAGCCCGAAGGCAATTGTGCAAATTT
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTA
* *
72491795 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTA
*
72491834 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTA
*
72491873 TGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
72491899 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTA
Found at i:72491853 original size:78 final size:79
Alignment explanation
Indices: 72491756--72491926 Score: 254
Period size: 78 Copynumber: 2.2 Consensus size: 79
72491746 AATGTTCGAG
* *
72491756 TGATATCCAGGCTAAGCCCGAAGGCAATTGTGCAAATTTTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
72491820 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
72491834 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
72491899 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** *
72491913 CCATAACCGGGCTA
1 TGATATCCGGGCTA
72491927 TGTCCCGAGG
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
78 52 0.63
79 31 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:72500221 original size:40 final size:40
Alignment explanation
Indices: 72500174--72500321 Score: 242
Period size: 40 Copynumber: 3.7 Consensus size: 40
72500164 CTACTCGCTT
*
72500174 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCAC
* * *
72500214 AATTGCCTTCGGGACTTAGCCCGGTTATGGTAACTCGCAC
1 AAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCAC
**
72500254 AAATGCCTTCAGGACTTAGCCCGGACATAGTAACTCGCAC
1 AAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCAC
72500294 AAATGCCTTCAGGACTTAGCCCGGTTAT
1 AAATGCCTTCAGGACTTAGCCCGGTTAT
72500322 CATCCGAATA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:72501530 original size:14 final size:14
Alignment explanation
Indices: 72501510--72501538 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
72501500 AGGATGAAGC
72501510 CTTTTTTTTTT-TT
1 CTTTTTTTTTTCTT
72501523 CTTTTTTTTTTCTT
1 CTTTTTTTTTTCTT
72501537 CT
1 CT
72501539 AGGAACGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
CTTTTTTTTTTCTT
Found at i:72503461 original size:64 final size:64
Alignment explanation
Indices: 72503383--72503628 Score: 273
Period size: 64 Copynumber: 3.8 Consensus size: 64
72503373 ACATTATGAG
* * *
72503383 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATATAT
1 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
72503447 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
1 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
* ** * * * * * * *
72503511 GTAGCTAGGTTGCATATGTGGTTCCAAGTGAAGGACACCATGTAAACAAGAGAGCTACGAGATAC
1 GTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATAA
72503576 A-
63 AT
* * * *
72503577 GTGGCTAGGTCACATGGGTGGTACTAAGTG-ATCACCATGT-GTACAAGAGAGC
1 GTAGCTAGGTCGCATGGGTGATACTATGTGTA-CACCATGTAG-ACAAGAGAGC
72503629 CAAAATTATG
Statistics
Matches: 153, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 78 0.51
65 8 0.05
66 16 0.10
67 31 0.20
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
Found at i:72504998 original size:20 final size:21
Alignment explanation
Indices: 72504962--72505000 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
72504952 TTACTTTTAT
72504962 GGGTTATTCTATTGTTCAAAA
1 GGGTTATTCTATTGTTCAAAA
*
72504983 GGGTTA-TCTTTTGTTCAA
1 GGGTTATTCTATTGTTCAA
72505001 TCTTGCTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46
Consensus pattern (21 bp):
GGGTTATTCTATTGTTCAAAA
Found at i:72507501 original size:19 final size:19
Alignment explanation
Indices: 72507477--72507514 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
72507467 CAAGACATGG
*
72507477 TTCACGTGAATTAAATTAA
1 TTCACGTGAATAAAATTAA
72507496 TTCACGTGAATAAAATTAA
1 TTCACGTGAATAAAATTAA
72507515 CTTAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (19 bp):
TTCACGTGAATAAAATTAA
Found at i:72509556 original size:40 final size:39
Alignment explanation
Indices: 72509391--72509574 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
72509381 AAATTGAATG
* * *
72509391 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
72509431 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
72509471 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
72509511 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
72509550 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
72509575 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:72509599 original size:80 final size:81
Alignment explanation
Indices: 72509431--72509619 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
72509421 GCTGGAAATT
* * * *
72509431 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
72509496 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
72509512 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
72509575 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
72509591 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
72509620 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:72517061 original size:28 final size:28
Alignment explanation
Indices: 72517000--72517097 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
72516990 TCACAAATTG
** * *
72517000 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
72517029 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
72517057 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
72517085 GCACTAAGTGTGC
1 GCACTAAGTGTGC
72517098 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:72524743 original size:28 final size:28
Alignment explanation
Indices: 72524682--72524779 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
72524672 TCACAAATTG
** * *
72524682 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
72524711 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
72524739 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
72524767 GCACTAAGTGTGC
1 GCACTAAGTGTGC
72524780 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:72531339 original size:37 final size:35
Alignment explanation
Indices: 72531289--72531374 Score: 127
Period size: 37 Copynumber: 2.3 Consensus size: 35
72531279 TACGAAGTCT
72531289 TACCCGGACATAATCTCCACAAGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACAAGTAGTCATC-GGTC
*
72531325 GTACCCGGACATAATCTCCACACGTAGTCATCGGTC
1 -TACCCGGACATAATCTCCACAAGTAGTCATCGGTC
72531361 TCACCCGGAACATA
1 T-ACCCGG-ACATA
72531375 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
35 1 0.02
36 10 0.22
37 35 0.76
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.21
Consensus pattern (35 bp):
TACCCGGACATAATCTCCACAAGTAGTCATCGGTC
Found at i:72531512 original size:49 final size:49
Alignment explanation
Indices: 72531443--72531755 Score: 502
Period size: 49 Copynumber: 6.4 Consensus size: 49
72531433 TTTACCACAT
* *
72531443 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
72531492 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
72531541 ATATATATATATACTTTCACATTCATCA-ATCGGCCATTAGGCCTTATCAC
1 ATATACATACAT--TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
72531591 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
72531640 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
72531689 ATATACATACATTTTCACATTCATCACATCGGCGATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
72531738 ATATACATACATTTTCAC
1 ATATACATACATTTTCAC
72531756 GAATCTTGAT
Statistics
Matches: 244, Mismatches: 17, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
48 12 0.05
49 187 0.77
50 32 0.13
51 13 0.05
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:72531612 original size:148 final size:147
Alignment explanation
Indices: 72531443--72531755 Score: 502
Period size: 148 Copynumber: 2.1 Consensus size: 147
72531433 TTTACCACAT
* * *
72531443 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTC
* *
72531508 ACATTCACCACATCGGCCATTAGGCCTTATCACATATATATATATACTTTCACATTCATCA-ATC
66 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACAT--TTTCACATTCATCACATC
72531572 GGCCATTAGGCCTTATCAC
129 GGCCATTAGGCCTTATCAC
* * * *
72531591 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATTTTC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTC
*
72531656 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTCACATTCATCACATCGG
66 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACATTTTCACATTCATCACATCGG
*
72531721 CGATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
72531738 ATATACATACATTTTCAC
1 ATATACATACATTTTCAC
72531756 GAATCTTGAT
Statistics
Matches: 152, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
146 14 0.09
147 38 0.25
148 100 0.66
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.33
Consensus pattern (147 bp):
ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTC
ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACATTTTCACATTCATCACATCGG
CCATTAGGCCTTATCAC
Found at i:72541562 original size:79 final size:80
Alignment explanation
Indices: 72541459--72541639 Score: 206
Period size: 79 Copynumber: 2.3 Consensus size: 80
72541449 GAGTCACGTA
* * * * *
72541459 CCTTCGGGATTTA-ACCGGATATAACCACAAGCAC-AATTGCCTTTGGGTCTTAACCCGGAT-TG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACGAA-TGCCTTCGGGTCTTAACCCGGATATA
* * *
72541521 GTAACTTGCACAATTG
65 ATAACTAGCACAAATG
* ** *
72541537 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACGAATGCCTTCGGGTCTTAACCCGGATATAA
* *
72541602 TCACTAGCATAAATG
66 TAACTAGCACAAATG
72541617 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72541640 CATTCAAATG
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 11 0.13
79 38 0.45
80 36 0.42
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACGAATGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:72541588 original size:40 final size:40
Alignment explanation
Indices: 72541473--72541639 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
72541463 CGGGATTTAA
* * * *
72541473 CCGGATATAACCACAAGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
*** *
72541513 CCGGAT-TGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
*
72541552 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
72541592 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTAGCACAATTGCCTTCGGGTCTTAGC
72541632 CCGGATAT
1 CCGGATAT
72541640 CATTCAAATG
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
39 33 0.31
40 72 0.67
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:72552636 original size:23 final size:23
Alignment explanation
Indices: 72552587--72552642 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
72552577 TAGCTACTAT
*
72552587 GAGCTTACTG-TTCAGCTCGTCA
1 GAGCTTACTGTTTCAGCTCATCA
*
72552609 AAGCTTACTGTTTCAGCTCAAT-A
1 GAGCTTACTGTTTCAGCTC-ATCA
72552632 GAGCTTACTGT
1 GAGCTTACTGT
72552643 CCATCAGCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.31
23 19 0.66
24 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCATCA
Found at i:72555913 original size:79 final size:80
Alignment explanation
Indices: 72555724--72555951 Score: 236
Period size: 78 Copynumber: 2.9 Consensus size: 80
72555714 GGATATAACT
* * * * * *
72555724 ACTCGCTCAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTAGCACAAATGCCTTCGGGACA
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATT-TAGTAACTAGCACCAATGCCTTCGGGACT
**
72555788 TAGCCCGGTTATAGTA
65 TAGCCCGAATATAGTA
* * *
72555804 ACT--CACAAATGCCTTCAGGACTTAACCCGGATTTAGTGACTCGCACCAATGCCTTCGGG-CTT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTAGCACCAATGCCTTCGGGACTT
72555866 AGCCCGAA-ATTAGTA
66 AGCCCGAATA-TAGTA
* * * *
72555881 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTCGGGAC
1 ACTCGCACAAATGCCTTCAGGA-CTTAGCCCGGATTTAGTAAC-TAGCACCAATGCCTTCGGGAC
72555944 TTAGCCCG
64 TTAGCCCG
72555952 GACATCATTC
Statistics
Matches: 124, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
76 1 0.01
77 16 0.13
78 48 0.39
79 43 0.35
80 16 0.13
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTAGCACCAATGCCTTCGGGACTT
AGCCCGAATATAGTA
Found at i:72555953 original size:40 final size:40
Alignment explanation
Indices: 72555731--72555953 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
72555721 ACTACTCGCT
* * *
72555731 CAAACGCCTTCGGGACATAGCCCGGTTATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
72555771 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACT--CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * * *
72555809 CAAATGCCTTCAGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
72555849 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* *
72555888 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
72555929 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72555954 CATCATTCGA
Statistics
Matches: 156, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
38 36 0.23
39 28 0.18
40 78 0.50
41 14 0.09
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:72562627 original size:39 final size:41
Alignment explanation
Indices: 72562579--72562757 Score: 148
Period size: 39 Copynumber: 4.6 Consensus size: 41
72562569 TACTAGCTCG
* * *
72562579 ATTGTCTTCGGGACATT-GCCC-GTTATAGTGATTCGCAC-A
1 ATTGCCTTCGGGACATTAGCCCGGTT-TAGTAACTCGCACGA
*
72562618 ATTGCCTTCGGGA-ATTAGCCCGGTTTGGTAACTCGCACGA
1 ATTGCCTTCGGGACATTAGCCCGGTTTAGTAACTCGCACGA
* *
72562658 A-TGCCTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCA--A
1 ATTGCCTTCGGGACATTAGCCCGG-TTTAGTAACTCGCACGA
* * *
72562696 ATTGCCTTC-GGAC-TTAACCCGGTTTAGTCACTTAGCAC-A
1 ATTGCCTTCGGGACATTAGCCCGGTTTAGTAAC-TCGCACGA
**
72562735 AAAGCCTTCGGGAC-TTAGCCCGG
1 ATTGCCTTCGGGACATTAGCCCGG
72562758 ATACCATTCG
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
37 7 0.06
38 22 0.18
39 60 0.50
40 31 0.26
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.28
Consensus pattern (41 bp):
ATTGCCTTCGGGACATTAGCCCGGTTTAGTAACTCGCACGA
Found at i:72562703 original size:78 final size:79
Alignment explanation
Indices: 72562611--72562757 Score: 199
Period size: 78 Copynumber: 1.9 Consensus size: 79
72562601 TTATAGTGAT
* * * * *
72562611 TCGCACAATTGCCTTCGGGAATTAGCCCGGTTTGGTAAC-TCGCACGAATGCCTTCGGGACTTAA
1 TCGCACAATTGCCTTC-GGAATTAACCCGGTTTAGTAACTTAGCACAAAAGCCTTCGGGACTTAA
72562675 CCCGGTTTTGGTAAC
65 CCCGGTTTTGGTAAC
* * *
72562690 TCGCA-AATTGCCTTCGGACTTAACCCGGTTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 TCGCACAATTGCCTTCGGAATTAACCCGGTTTAGTAACTTAGCACAAAAGCCTTCGGGACTTAAC
72562754 CCGG
66 CCGG
72562758 ATACCATTCG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
77 18 0.31
78 36 0.61
79 5 0.08
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
TCGCACAATTGCCTTCGGAATTAACCCGGTTTAGTAACTTAGCACAAAAGCCTTCGGGACTTAAC
CCGGTTTTGGTAAC
Found at i:72562718 original size:38 final size:40
Alignment explanation
Indices: 72562611--72562757 Score: 169
Period size: 39 Copynumber: 3.8 Consensus size: 40
72562601 TTATAGTGAT
* *
72562611 TCGCACAATTGCCTTCGGGAATTAGCCCGG-TTTGGTAAC
1 TCGCACAATTGCCTTCGGGACTTAACCCGGTTTTGGTAAC
72562650 TCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCAC-AATTGCCTTCGGGACTTAACCCGGTTTTGGTAAC
* *
72562690 TCGCA-AATTGCCTTC-GGACTTAACCCGG-TTTAGTCAC
1 TCGCACAATTGCCTTCGGGACTTAACCCGGTTTTGGTAAC
* ** *
72562727 TTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 -TCGCACAATTGCCTTCGGGACTTAACCCGG
72562758 ATACCATTCG
Statistics
Matches: 94, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
37 7 0.07
38 19 0.20
39 40 0.43
40 28 0.30
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
TCGCACAATTGCCTTCGGGACTTAACCCGGTTTTGGTAAC
Found at i:72569349 original size:40 final size:40
Alignment explanation
Indices: 72569305--72569483 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
72569295 GCTCGATTGT
* * * *
72569305 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
72569345 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
72569385 CTTCGGGACTTAACCCAGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
72569425 CTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
72569466 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
72569484 ATACCATTCG
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 89 0.75
41 27 0.23
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:72574016 original size:40 final size:40
Alignment explanation
Indices: 72573960--72574187 Score: 277
Period size: 40 Copynumber: 5.7 Consensus size: 40
72573950 GGATATAACT
* * *
72573960 ACTCGCTCAAACGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
72574000 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
72574040 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
72574080 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
72574119 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
*
72574159 ACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 AC-TCGCACAAATGCCTTCGGGACTTAGCC
72574188 AGGACATCAT
Statistics
Matches: 165, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 30 0.18
40 119 0.72
41 14 0.08
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:72597489 original size:47 final size:46
Alignment explanation
Indices: 72597418--72597585 Score: 178
Period size: 47 Copynumber: 3.6 Consensus size: 46
72597408 TGATTTGTGC
*
72597418 GCTAGTGTAAGACATGTCTGGGACATGTATCAACCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATATTATGAGA
* * * * * *
72597464 GCCAGTGTAAGACCATGTTTGGGACATGGCATCAA-AATCCA-GACGAGG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAACCAT--ATTATGAGA
* * *
72597512 GCTAGTGTAAGACATGTTTGGGGCATGCATCAGCCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATATTATGAGA
*
72597558 GCTAGTGTAAGACCATGACTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
72597586 GCATTGGCAC
Statistics
Matches: 98, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
45 1 0.01
46 33 0.34
47 42 0.43
48 21 0.21
49 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATATTATGAGA
Found at i:72597616 original size:94 final size:94
Alignment explanation
Indices: 72597418--72597781 Score: 356
Period size: 94 Copynumber: 3.9 Consensus size: 94
72597408 TGATTTGTGC
* *
72597418 GCTAGTGTAAGACATGTCTGGGACATGTATCAACCAT-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGT
* ***
72597482 TTGGGACATGGCATCAAAATCCAGACGA-GG-
66 CTGGGACATGGCATCGGCA--CAGA-GATGGT
* * * *
72597512 GCTAGTGTAAGACATGTTTGGGGCATGCATCAGCCAT-ATTATGAGAGCTAGTGTAAGACCATGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGT
*
72597576 CTGGGACATGGCATTGGCACAGAGATGCGT
66 CTGGGACATGGCATCGGCACAGAGATG-GT
* * * * *
72597606 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-CA-GAGATAGCCAGTGTAAGA-CG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATC-ATTATGAG--AGCCAGTGTAAGACCA
* * *
72597667 TGTCTGGGACA-CGCATCGGCTA-AAAG-TTGT
63 TGTCTGGGACATGGCATCGGC-ACAGAGATGGT
* *
72597697 GCTAGTGTAAAACATGTTTGGGACATGCATCAG-CATGCATATATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-CAT-TATGAGAGCCAGTGTAAGACCAT
*
72597761 GTCTAGGACATGGCATCGGCA
64 GTCTGGGACATGGCATCGGCA
72597782 ATTTATCCCA
Statistics
Matches: 222, Mismatches: 33, Indels: 31
0.78 0.12 0.11
Matches are distributed among these distances:
90 1 0.00
91 34 0.15
92 20 0.09
93 28 0.13
94 126 0.57
95 13 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCACAGAGATGGT
Found at i:72604157 original size:48 final size:46
Alignment explanation
Indices: 72604056--72604397 Score: 261
Period size: 47 Copynumber: 7.3 Consensus size: 46
72604046 TTTATGCGCT
*
72604056 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGACATATTATGAGAGCC
* * *
72604102 AGTGTAAGACCATGTTTGGGACATGGCATC-GACAT-TTAGATGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGACATATT--ATGAGAGCC
* *
72604150 AGAGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGACATATTATGAGAGCC
* * * * *
72604196 AGTGTAAGACCATGTCTGGGACATGGCAACGGTACAGA-GATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG-ACATATTATGAGAGCC
* * * **
72604244 AGAGTAAGACATGTCTGGGACATGCATC-GGCCTCAGCA-GAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGACAT-ATTATGAG--AGCC
* * * ** * * *
72604291 AGTGTAAGACGTGTCTGGGACACGCATC-GGC-TAAGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGACATATTATG-AGAGCC
72604335 AGTGTAAGACATGTCTGGGACATGCATCA-ACACTCATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGACA-T-AT-TATGAGAGCC
*
72604383 AATGTAAGACCATGT
1 AGTGTAAGA-CATGT
72604398 TTGAGTCATG
Statistics
Matches: 235, Mismatches: 40, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
44 30 0.13
45 8 0.03
46 39 0.17
47 94 0.40
48 55 0.23
49 9 0.04
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGACATATTATGAGAGCC
Found at i:72604216 original size:94 final size:94
Alignment explanation
Indices: 72604053--72604416 Score: 406
Period size: 94 Copynumber: 3.9 Consensus size: 94
72604043 TGATTTATGC
*
72604053 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGT
* *
72604117 TTGGGACATGGCATCGACATTTAGATGAGG
66 CTGGGACATGGCATCGACA-TTAGATGAGT
72604147 GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCAT-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGT
* *
72604211 CTGGGACATGGCAACGGTACA-GAGATGAGT
66 CTGGGACATGGCATC-G-ACATTAGATGAGT
* * ** *
72604241 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCC-TCAGCA-GAGATAGCCAGTGTAAGA-CGT
1 GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAG--AGCCAGTGTAAGACCAT
* * * *
72604303 GTCTGGGACA-CGCATCGGC-TAAGA-GTTGT
64 GTCTGGGACATGGCATCGACATTAGATG-AGT
* * *
72604332 GCTAGTGTAAGACATGTCTGGGACATGCATCA-ACACTCATATATGAGAGCCAATGTAAGACCAT
1 GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCA-TCAT-TATGAGAGCCAGTGTAAGACCAT
* * *
72604396 GTTTGAGTCATGGCATCGACA
64 GTCTGGGACATGGCATCGACA
72604417 ATTTATCCTA
Statistics
Matches: 228, Mismatches: 28, Indels: 27
0.81 0.10 0.10
Matches are distributed among these distances:
90 2 0.01
91 35 0.15
92 16 0.07
93 18 0.08
94 140 0.61
95 14 0.06
96 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACATTAGATGAGT
Found at i:72604412 original size:141 final size:142
Alignment explanation
Indices: 72604053--72604416 Score: 349
Period size: 141 Copynumber: 2.6 Consensus size: 142
72604043 TGATTTATGC
*
72604053 GCTAGTGTAAGACATGTCTGGGACATGCATC-A-GC-CATATTATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACGCTCATA-TATGAGAGCCAATGTAAGACCAT
* * * * *
72604115 GTTTGGGACATGGCATCGACATTTAGATGAGGGCTAGAGTAAGACATGTCTGGGACATGCATCAG
65 GTTTGGGACATGGCATCGACACTCAGATGAGAGCCAGAGTAAGACATGTCTGGGACACGCATCAG
**
72604180 CCATATTATGAGA
130 CCATAAGATGAGA
* * * * * *
72604193 GCCAGTGTAAGACCATGTCTGGGACATG--GCAACGGTACAGAGATGAGTGCCAGA-GTAAGA-C
1 GCTAGTGTAAGA-CATGTCTGGGACATGCATCAACGCT-CATATATGAGAGCCA-ATGTAAGACC
* * * *
72604254 ATGTCTGGGACAT-GCATCGGC-CTCAGCA-GAGATAGCCAGTGTAAGACGTGTCTGGGACACGC
63 ATGTTTGGGACATGGCATCGACACTCAG-ATGAG--AGCCAGAGTAAGACATGTCTGGGACACGC
* * *
72604316 ATC-GGC-TAAGA-GTTGT
125 ATCAGCCATAAGATG-AGA
*
72604332 GCTAGTGTAAGACATGTCTGGGACATGCATCAACACTCATATATGAGAGCCAATGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACGCTCATATATGAGAGCCAATGTAAGACCATG
* *
72604397 TTTGAGTCATGGCATCGACA
66 TTTGGGACATGGCATCGACA
72604417 ATTTATCCTA
Statistics
Matches: 176, Mismatches: 32, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
138 17 0.10
139 40 0.23
140 38 0.22
141 63 0.36
142 15 0.09
143 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (142 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACGCTCATATATGAGAGCCAATGTAAGACCATG
TTTGGGACATGGCATCGACACTCAGATGAGAGCCAGAGTAAGACATGTCTGGGACACGCATCAGC
CATAAGATGAGA
Found at i:72608028 original size:47 final size:48
Alignment explanation
Indices: 72607938--72608111 Score: 166
Period size: 47 Copynumber: 3.7 Consensus size: 48
72607928 GGGGTAAGGT
* * *
72607938 GTCGATGCCAT-TCCCAGACATGGCCTTACACAGGCTCAT-ATCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGAA
* * *
72607984 GTCGATGCCATGTCTCATACATGGTCTTACACTGACTATCATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAA
* * *
72608032 GTTGATG-CATGTCCTAGACAT-GTCTTACACT-AGC-ATTCTTCTCGATA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTCGA-A
*
72608079 -CCGATGCCATGTCCCAGACATGGTCTTACACTG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTG
72608112 GCTTTATAAT
Statistics
Matches: 104, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
45 2 0.02
46 35 0.34
47 50 0.48
48 17 0.16
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAA
Found at i:72608153 original size:93 final size:94
Alignment explanation
Indices: 72607986--72608158 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 94
72607976 TATCTCAAGT
* * * **
72607986 CGATGCCATGTCTCATACATGGTCTTACACTGACTATCATCTCGTAGTTGATGCATGTCCTAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCTAGAC
72608051 ATGTCTTACACTAGCATTCTTCTCGATAC
66 ATGTCTTACACTAGCATTCTTCTCGATAC
* * * *
72608080 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TTATAAT-GTGGCCGATGTATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCTAGA
72608143 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
72608159 TCACAATAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
93 36 0.52
94 33 0.48
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCTAGAC
ATGTCTTACACTAGCATTCTTCTCGATAC
Found at i:72615576 original size:47 final size:49
Alignment explanation
Indices: 72615485--72615657 Score: 136
Period size: 47 Copynumber: 3.7 Consensus size: 49
72615475 GGGGTAAGGT
* *
72615485 GTCGATGCCATGTCTTAGACATGGCCTTACAC-CAGCTCATATCTC-AA
1 GTCGATGCCATGTCTCAGACATGGTCTTACACTCAGCTCATATCTCGAA
* * *
72615532 GTCGATGCCATGTCTCATACATGGTCTTACACTGA-CT-ATCATCTCGTA
1 GTCGATGCCATGTCTCAGACATGGTCTTACACTCAGCTCAT-ATCTCGAA
* *
72615580 GTTGATG-CATGTC-CTAGACAT-GTCTTACACT-AG--CATTCGTCTCGATA
1 GTCGATGCCATGTCTC-AGACATGGTCTTACACTCAGCTCA-T-ATCTCGA-A
* *
72615627 -CCG-TGCCATGTCCCAGACATGGTCTTACACT
1 GTCGATGCCATGTCTCAGACATGGTCTTACACT
72615658 GGCTTTATAA
Statistics
Matches: 104, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
45 4 0.04
46 33 0.32
47 59 0.57
48 8 0.08
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (49 bp):
GTCGATGCCATGTCTCAGACATGGTCTTACACTCAGCTCATATCTCGAA
Found at i:72615623 original size:46 final size:45
Alignment explanation
Indices: 72615550--72615706 Score: 133
Period size: 46 Copynumber: 3.4 Consensus size: 45
72615540 CATGTCTCAT
**
72615550 ACATGGTCTTACACT-GACTATCATCTCGTAGTTGATGCATGTCCTAG
1 ACAT-GTCTTACACTAG-CT-TCATCTCGTAGCCGATGCATGTCCTAG
* *
72615597 ACATGTCTTACACTAGCATTCGTCTCGATA-CCG-TGCCATGTCCCAG
1 ACATGTCTTACACTAGC-TTCATCTCG-TAGCCGATG-CATGTCCTAG
* * * * *
72615643 ACATGGTCTTACACTGGCTTTATAAT-GTGGCCGATGTATGTCCTAG
1 ACAT-GTCTTACACTAGCTTCAT-CTCGTAGCCGATGCATGTCCTAG
72615689 ACATGTCTTACACTAGCT
1 ACATGTCTTACACTAGCT
72615707 CACAATAACC
Statistics
Matches: 90, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
45 16 0.18
46 51 0.57
47 23 0.26
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (45 bp):
ACATGTCTTACACTAGCTTCATCTCGTAGCCGATGCATGTCCTAG
Found at i:72618981 original size:28 final size:28
Alignment explanation
Indices: 72618912--72619012 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72618902 GACAAGATTG
* * * *
72618912 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72618942 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72618970 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72618999 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72619013 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72619006 original size:29 final size:28
Alignment explanation
Indices: 72618941--72619012 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
72618931 AAAATTGTAC
*
72618941 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
72618969 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
72618998 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72619013 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:72626772 original size:28 final size:29
Alignment explanation
Indices: 72626741--72626812 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
72626731 AAAATTGTAC
*
72626741 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATGTATAT
72626769 AGCACTAAGTGTGCGAGCTGAATGTATAT
1 AGCACTAAGTGTGCGAGCTGAATGTATAT
72626798 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72626813 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATGTATAT
Found at i:72628588 original size:24 final size:25
Alignment explanation
Indices: 72628560--72628630 Score: 103
Period size: 24 Copynumber: 3.0 Consensus size: 25
72628550 CCTAACTTTC
* *
72628560 GGCTTTTTGGCATTTTGA-CTTTTT
1 GGCTTTTCGGCATTTTCAGCTTTTT
72628584 GGCTTTTCGGCA-TTTCAGCTTTTT
1 GGCTTTTCGGCATTTTCAGCTTTTT
72628608 GGCTTTTCGGCA-TTTCAGCTTTT
1 GGCTTTTCGGCATTTTCAGCTTTT
72628631 GCCGATTCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.09
24 40 0.91
ACGTcount: A:0.08, C:0.18, G:0.21, T:0.52
Consensus pattern (25 bp):
GGCTTTTCGGCATTTTCAGCTTTTT
Found at i:72628623 original size:8 final size:8
Alignment explanation
Indices: 72628556--72628630 Score: 62
Period size: 8 Copynumber: 9.4 Consensus size: 8
72628546 GTAGCCTAAC
72628556 TTTCGGCT
1 TTTCGGCT
*
72628564 TTTTGGCAT
1 TTTCGGC-T
*
72628573 TTT-GACT
1 TTTCGGCT
*
72628580 TTTTGGCT
1 TTTCGGCT
*
72628588 TTTCGGCA
1 TTTCGGCT
*
72628596 TTTCAGCT
1 TTTCGGCT
*
72628604 TTTTGGCT
1 TTTCGGCT
*
72628612 TTTCGGCA
1 TTTCGGCT
*
72628620 TTTCAGCT
1 TTTCGGCT
72628628 TTT
1 TTT
72628631 GCCGATTCAT
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
7 4 0.08
8 44 0.85
9 4 0.08
ACGTcount: A:0.08, C:0.19, G:0.20, T:0.53
Consensus pattern (8 bp):
TTTCGGCT
Found at i:72630634 original size:49 final size:49
Alignment explanation
Indices: 72630529--72630636 Score: 137
Period size: 49 Copynumber: 2.2 Consensus size: 49
72630519 CTTGTTGTGT
* * *
72630529 GTCAGTGTAAGACCTATCTGGGACATGGCATTGACAGCGATAGATGAGA
1 GTCAGTGTAAGACCTATCTAGGACATGGCATTGACAGCGATAAATGAAA
* * **
72630578 G-CTAGTGTAAGACCTATCTAGGACATGGTATTGGCCTCGATAAATGAAA
1 GTC-AGTGTAAGACCTATCTAGGACATGGCATTGACAGCGATAAATGAAA
72630627 GTCAGTGTAA
1 GTCAGTGTAA
72630637 AACTTGTTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 1 0.02
49 48 0.96
50 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCTATCTAGGACATGGCATTGACAGCGATAAATGAAA
Found at i:72634439 original size:49 final size:49
Alignment explanation
Indices: 72634386--72634757 Score: 581
Period size: 49 Copynumber: 7.7 Consensus size: 49
72634376 GATTTTACGC
* * * *
72634386 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
* *
72634435 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
72634484 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
72634533 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
72634582 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
*
72634631 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
* * * * * *
72634680 GATGAATGTGAAAGTGTAT--ATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
* *
72634727 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGCGTATACATATGTGATAAG
72634758 TCCCGAAGGG
Statistics
Matches: 309, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 51 0.17
48 1 0.00
49 257 0.83
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (49 bp):
GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
Found at i:72638206 original size:2 final size:2
Alignment explanation
Indices: 72638199--72638227 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
72638189 TAAGTCGATA
72638199 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72638228 AAACATGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72638277 original size:3 final size:3
Alignment explanation
Indices: 72638267--72638658 Score: 138
Period size: 3 Copynumber: 132.3 Consensus size: 3
72638257 GACGAAAACG
* * * * *
72638267 ATA A-A ATA ATA ATA TTG ATA ATA ATA ATA GAAA ATA AAA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* *
72638312 ATA AT- ATA GA-A ATA GTA ATA A-A A-A AGA A-A AT- ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
72638352 ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGT- ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA
* * * * *
72638396 ATA TTA GATA GTA A-A AAA ATA AAA ATA A-A ATA ATA ATA ATA GTA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
72638440 ATA A-A A-A ATG ATA AT- GTG ATA TTA ACA GTA ATA ATA ATA ATA GGA-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA
* * * * *
72638486 ATA ATA ATA ATA TATA CTA ATA ACA ACA ATA AT- ATGA AAA ATA AGAA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA A-TA
* * * * *
72638533 ATA ACA ATA CACTA ATA AGA ATA CTA ATA GATCA CTA ATA ATA ATA GTA
1 ATA ATA ATA -A-TA ATA ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA
* * * * ** * * *
72638582 A-A AAA ATA AAA ATA ATA AT- ATA TTA CTA AGG GTA ATG ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
72638628 ATA ATA ATA ATA ATA ATA AGA GTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
72638659 CATCTTAGAT
Statistics
Matches: 282, Mismatches: 76, Indels: 62
0.67 0.18 0.15
Matches are distributed among these distances:
2 33 0.12
3 227 0.80
4 18 0.06
5 4 0.01
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:72638331 original size:17 final size:17
Alignment explanation
Indices: 72638311--72638352 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
72638301 TAAAAATAAA
*
72638311 AATAATATAG-AAATAGT
1 AATAATAAAGAAAATA-T
*
72638328 AATAAAAAAGAAAATAT
1 AATAATAAAGAAAATAT
72638345 AATAATAA
1 AATAATAA
72638353 TAGTAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (17 bp):
AATAATAAAGAAAATAT
Found at i:72638341 original size:29 final size:29
Alignment explanation
Indices: 72638284--72638361 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 29
72638274 AATAATATTG
*
72638284 ATAATAATAATAGAAAATAAAAATAAAAAT
1 ATAATAATAATAG-TAATAAAAATAAAAAT
72638314 A-ATATAGA-AATAGTAATAAAAA-AGAAAAT
1 ATA-ATA-ATAATAGTAATAAAAATA-AAAAT
72638343 ATAATAATAATAGTAATAA
1 ATAATAATAATAGTAATAA
72638362 TACAATAGTA
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
28 2 0.05
29 29 0.69
30 10 0.24
31 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.24
Consensus pattern (29 bp):
ATAATAATAATAGTAATAAAAATAAAAAT
Found at i:72638352 original size:37 final size:40
Alignment explanation
Indices: 72638290--72638443 Score: 68
Period size: 37 Copynumber: 4.0 Consensus size: 40
72638280 ATTGATAATA
72638290 ATAATAGAAAATAAAAAT--AAA-AATAATATAGA-AATA
1 ATAATAGAAAATAAAAATAAAAATAATAATATAGATAATA
* *
72638326 GTAATA-AAAA-AGAAAAT-ATAATAATAATAGTA-ATAAT-
1 ATAATAGAAAATA-AAAATAAAAATAATAATA-TAGATAATA
* ** *
72638363 ACAATAGTAATAATAATAAA-AAGGTATAATAATATA-TTAGATA
1 ATAATAG-AA-AATAA-AAATAA-AAATAATAATATAGATA-ATA
*
72638406 GTAA-A-AAAATAAAAAT-AAAATAATAATAATAG-TAATA
1 ATAATAGAAAATAAAAATAAAAATAATAAT-ATAGATAATA
72638443 A
1 A
72638444 AAAATGATAA
Statistics
Matches: 89, Mismatches: 12, Indels: 33
0.66 0.09 0.25
Matches are distributed among these distances:
34 1 0.01
35 9 0.10
36 7 0.08
37 23 0.26
38 14 0.16
39 7 0.08
40 5 0.06
41 9 0.10
42 12 0.13
43 2 0.02
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.26
Consensus pattern (40 bp):
ATAATAGAAAATAAAAATAAAAATAATAATATAGATAATA
Found at i:72638370 original size:14 final size:13
Alignment explanation
Indices: 72638339--72638378 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
72638329 ATAAAAAAGA
72638339 AAATA-TAATAAT
1 AAATAGTAATAAT
72638351 -AATAGTAATAAT
1 AAATAGTAATAAT
72638363 ACAATAGTAATAAT
1 A-AATAGTAATAAT
72638377 AA
1 AA
72638379 TAAAAAGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 1 0.04
14 13 0.52
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
AAATAGTAATAAT
Found at i:72640074 original size:41 final size:41
Alignment explanation
Indices: 72639997--72640074 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
72639987 ATCCGCTTCA
* * *
72639997 CTGCTCCACTGCAACTTTGGTGAGATAAAGTTTGTTTTGAT
1 CTGCTCCACTGCAACTTTAGAGAGATAAAGTCTGTTTTGAT
*
72640038 CTGCTCTACTGCAACTTTAGAGAGAT-AAGATCTGTTT
1 CTGCTCCACTGCAACTTTAGAGAGATAAAG-TCTGTTT
72640075 ATTCATAGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 3 0.09
41 29 0.91
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (41 bp):
CTGCTCCACTGCAACTTTAGAGAGATAAAGTCTGTTTTGAT
Found at i:72640411 original size:44 final size:44
Alignment explanation
Indices: 72640363--72640595 Score: 136
Period size: 44 Copynumber: 5.3 Consensus size: 44
72640353 ACCTGCTCCA
*
72640363 CTACTGCTTAGGGAGACAAGATCTGTAATTTTCATCCTGTTACC
1 CTACTGCTTAGGGAGACAAGATCTATAATTTTCATCCTGTTACC
** ** * ** * *
72640407 CTACTGCTTAAGGG-GTTAAGGCCCATTGTCTTTGAT-CTGCT-CC
1 CTACTGCTT-AGGGAGACAAGATCTATAAT-TTTCATCCTGTTACC
* * * *
72640450 ACTACTGCTTAGGGAGACAAGATTTGTAATTTTTAGCCTGTTACC
1 -CTACTGCTTAGGGAGACAAGATCTATAATTTTCATCCTGTTACC
* * * ** ** * * *
72640495 TTATTGCTTAGGGGGTTAAGGCCCT-TCATCTTCGAT-CTGCT-CC
1 CTACTGCTTAGGGAGACAA-GATCTATAATTTTC-ATCCTGTTACC
* *
72640538 ACTACTGCTTAGGGAGACAAGATCTATAATTTTCAGCTTGTTACC
1 -CTACTGCTTAGGGAGACAAGATCTATAATTTTCATCCTGTTACC
72640583 CTACTGCTTAGGG
1 CTACTGCTTAGGG
72640596 GGCTAAGGCC
Statistics
Matches: 130, Mismatches: 47, Indels: 24
0.65 0.23 0.12
Matches are distributed among these distances:
43 16 0.12
44 98 0.75
45 16 0.12
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (44 bp):
CTACTGCTTAGGGAGACAAGATCTATAATTTTCATCCTGTTACC
Found at i:72640460 original size:88 final size:89
Alignment explanation
Indices: 72640355--72640692 Score: 495
Period size: 88 Copynumber: 3.8 Consensus size: 89
72640345 TGATTTCAAC
* *
72640355 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCATCCTGTTACCCTACTGCTTAAGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGG
*
72640420 GGTTAAGGCCCATT-GTCTTTGAT
66 GGTTAAGGCCCATTCGTCTTCGAT
* * * *
72640443 CTGCTCCACTACTGCTTAGGGAGACAAGATTTGTAATTTTTAGCCTGTTACCTTATTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGG
*
72640508 GGTTAAGGCCC-TTCATCTTCGAT
66 GGTTAAGGCCCATTCGTCTTCGAT
* *
72640531 CTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATTTTCAGCTTGTTACCCTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGG
*
72640596 GGCTAAGG-CCATTCGTCTTCGAT
66 GGTTAAGGCCCATTCGTCTTCGAT
* * * * *
72640619 CTGCTCCACTACTGGTTAGAGAGACAAGATCTGTAACTTTT-AACCTGCTACCCTATTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAA-TTTTCAGCCTGTTACCCTACTGCTTAGG
72640683 GGGTTAAGGC
65 GGGTTAAGGC
72640693 TTACGAATCT
Statistics
Matches: 222, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
87 4 0.02
88 214 0.96
89 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (89 bp):
CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGG
GGTTAAGGCCCATTCGTCTTCGAT
Found at i:72640631 original size:44 final size:43
Alignment explanation
Indices: 72640499--72640637 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 43
72640489 GTTACCTTAT
*
72640499 TGCTTAGGGGGTTAAGGCCCTTCATCTTCGATCTGCTCCACTAC
1 TGCTTAGGGGGCTAAGG-CCTTCATCTTCGATCTGCTCCACTAC
* ** * * * *
72640543 TGCTTAGGGAGAC-AAGATCTATAATTTTC-AGCTTGTTACC-CTAC
1 TGCTTAGGG-GGCTAAGGCCT-TCATCTTCGATC-TGCT-CCACTAC
*
72640587 TGCTTAGGGGGCTAAGGCCATTCGTCTTCGATCTGCTCCACTAC
1 TGCTTAGGGGGCTAAGGCC-TTCATCTTCGATCTGCTCCACTAC
*
72640631 TGGTTAG
1 TGCTTAG
72640638 AGAGACAAGA
Statistics
Matches: 70, Mismatches: 17, Indels: 16
0.68 0.17 0.16
Matches are distributed among these distances:
43 8 0.11
44 56 0.80
45 6 0.09
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.32
Consensus pattern (43 bp):
TGCTTAGGGGGCTAAGGCCTTCATCTTCGATCTGCTCCACTAC
Found at i:72648898 original size:22 final size:22
Alignment explanation
Indices: 72648856--72648898 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
72648846 TAGCGCTGCC
* *
72648856 TTAAGTTCTTCTATCTTCTCTT
1 TTAAGTTCTTCAATCTGCTCTT
72648878 TTAA-TTCTTCAATTCTGCTCT
1 TTAAGTTCTTCAA-TCTGCTCT
72648899 GACTAGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.16, C:0.23, G:0.05, T:0.56
Consensus pattern (22 bp):
TTAAGTTCTTCAATCTGCTCTT
Found at i:72653407 original size:29 final size:29
Alignment explanation
Indices: 72653373--72653504 Score: 158
Period size: 29 Copynumber: 4.6 Consensus size: 29
72653363 TACTCGATTT
** * *
72653373 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
72653402 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
72653431 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72653460 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72653489 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
72653505 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 2 0.02
29 87 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72657680 original size:40 final size:40
Alignment explanation
Indices: 72657544--72657697 Score: 139
Period size: 40 Copynumber: 3.9 Consensus size: 40
72657534 GTGTGCATGA
* ** *
72657544 GCAAATTGTGATATCCGGGCTAAGTTCCG-AGGACATTTAT
1 GCAAATAGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * * * *
72657584 GCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATAGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
72657624 GCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATAGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
72657664 GCAAATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 GCAAATAGTGATATCCGGGCTAAGACCCGAAGGC
72657698 CTTGGTGCGG
Statistics
Matches: 92, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 89 0.97
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
GCAAATAGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:72667002 original size:40 final size:41
Alignment explanation
Indices: 72666965--72667189 Score: 297
Period size: 40 Copynumber: 5.7 Consensus size: 41
72666955 GCTACTCGTT
*
72666965 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
72667005 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
72667045 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
72667085 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
72667125 CAAATGCCTTC-GG-TCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
72667165 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
72667190 CATCATTCGA
Statistics
Matches: 172, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
39 28 0.16
40 142 0.83
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:72674790 original size:40 final size:41
Alignment explanation
Indices: 72674753--72674977 Score: 297
Period size: 40 Copynumber: 5.7 Consensus size: 41
72674743 GCTACTCGTT
*
72674753 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
72674793 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
72674833 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
72674873 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
72674913 CAAATGCCTTC-GG-TCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
72674953 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
72674978 CATCATTCGA
Statistics
Matches: 172, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
39 28 0.16
40 142 0.83
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:72677082 original size:23 final size:23
Alignment explanation
Indices: 72677056--72677100 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
72677046 TAGCGTTAAG
72677056 TATAAGAGTGAAATGTTTTTCAA
1 TATAAGAGTGAAATGTTTTTCAA
72677079 TATAAGAGTGAAATGTTTTTCA
1 TATAAGAGTGAAATGTTTTTCA
72677101 TTTATCATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
TATAAGAGTGAAATGTTTTTCAA
Found at i:72679317 original size:16 final size:16
Alignment explanation
Indices: 72679298--72679328 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72679288 CTTCTTCACT
72679298 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
72679314 TACTTACTTACTTAA
1 TACTCACTTACTTAA
72679329 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:72679334 original size:20 final size:20
Alignment explanation
Indices: 72679295--72679334 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
72679285 AAACTTCTTC
* *
72679295 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
72679315 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
72679335 TTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:72679648 original size:53 final size:54
Alignment explanation
Indices: 72679519--72679771 Score: 211
Period size: 53 Copynumber: 4.8 Consensus size: 54
72679509 ACATGGGTAC
* * * *
72679519 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
72679568 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
72679621 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTTTAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * * * *
72679676 CTTATCAATGCCGTGTCTTGACATCGTCTTACATGAT-TTCTTGCCTGA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
72679728 CCTTA-CAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
72679772 AAACCCTAAT
Statistics
Matches: 163, Mismatches: 29, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
49 37 0.23
50 1 0.01
52 8 0.05
53 72 0.44
54 13 0.08
55 32 0.20
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:72679710 original size:108 final size:107
Alignment explanation
Indices: 72679558--72679761 Score: 261
Period size: 108 Copynumber: 1.9 Consensus size: 107
72679548 TACGTGGTAT
* * * *
72679558 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-
1 CCTTTTGAAACTTACCAATGCCATGTCTTGACATCGTCTTACATGAT-GCCTTGCCTGA-GAAAC
72679621 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTG
64 CTCA-CAATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTG
* * * **
72679665 CCTTTTAGTAACTTATCAATGCCGTGTCTTGACATCGTCTTACATGATTTCTTGCCTGAGAAACC
1 CCTTTT-GAAACTTACCAATGCCATGTCTTGACATCGTCTTACATGATGCCTTGCCTGAGAAACC
*
72679730 TTACAATTGCCATGCCTTGGCATGGTCTTACA
65 TCACAATTGCCATGCCTTGGCATGGTCTTACA
72679762 CGGTATCCTT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
106 1 0.01
107 19 0.23
108 63 0.76
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (107 bp):
CCTTTTGAAACTTACCAATGCCATGTCTTGACATCGTCTTACATGATGCCTTGCCTGAGAAACCT
CACAATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTG
Found at i:72687678 original size:55 final size:53
Alignment explanation
Indices: 72687535--72687679 Score: 193
Period size: 53 Copynumber: 2.7 Consensus size: 53
72687525 ATCCTTTTGA
* *
72687535 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTTATG
* * * *
72687588 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCC-TTGCCTTAT--G
*
72687643 AACTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATG
72687680 ATTTTCTTGC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.03
53 44 0.56
55 33 0.42
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTTATG
Found at i:72687690 original size:55 final size:54
Alignment explanation
Indices: 72687534--72687732 Score: 190
Period size: 55 Copynumber: 3.7 Consensus size: 54
72687524 TATCCTTTTG
* *
72687534 AAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGC-CTTGCCTTAT-
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATA-CTCTTGCCTTATA
* * * * **
72687587 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGAC-CTTTGCCTTATA
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATACTC-TTGCCTTATA
* ** *
72687641 ATAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTAGA
1 A-AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATACTCTTGCCTTATA
* * *
72687696 AACCTTACCAATTTCCATG-CATTGGCATGGTCTTACA
1 AAACTTACCAA-TGCCATGTC-TTGACATGGTCTTACA
72687733 CGGTATCCTT
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 44 0.37
54 9 0.08
55 64 0.53
56 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATACTCTTGCCTTATA
Found at i:72687692 original size:108 final size:110
Alignment explanation
Indices: 72687535--72687732 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
72687525 ATCCTTTTGA
* *
72687535 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
*
72687598 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAAT
65 TTGCCATGCATTGGCATGGTCTTACATGGGACCTTTGCCTTATAAT
* *** *
72687643 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
*
72687708 TTCCATGCATTGGCATGGTCTTACA
66 TGCCATGCATTGGCATGGTCTTACA
72687733 CGGTATCCTT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.60
109 7 0.09
110 23 0.29
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCATTGGCATGGTCTTACATGGGACCTTTGCCTTATAAT
Found at i:72691390 original size:27 final size:28
Alignment explanation
Indices: 72691334--72691403 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
72691324 AAATTTGTAC
72691334 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72691362 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72691389 AGCACTATGTGTGCG
1 AGCACTAAGTGTGCG
72691404 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72691414 original size:27 final size:27
Alignment explanation
Indices: 72691334--72691415 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
72691324 AAATTTGTAC
* *
72691334 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
72691362 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
72691389 AGCACTATGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
72691416 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:72693305 original size:21 final size:22
Alignment explanation
Indices: 72693265--72693305 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
72693255 TTCCAAAAAA
* *
72693265 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
72693287 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
72693306 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:72706891 original size:43 final size:43
Alignment explanation
Indices: 72706839--72707091 Score: 235
Period size: 43 Copynumber: 6.0 Consensus size: 43
72706829 ATATCGTACA
* * *
72706839 ATGCCAACAT-TCCAGACGTGGTCTTATATGTAACCACATATCG
1 ATGCC-ACATGTCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
72706882 ATGCCAACATCT-TAGACGTCGTCTTACACGTAATCACATATCA
1 ATGCC-ACATGTCCAGACGTGGTCTTACACGTAATCACATATCG
*
72706925 ATGCCAC-TGTCCCAAACAG-GG---TACACGTAATCACATATCG
1 ATGCCACATGT-CCAGAC-GTGGTCTTACACGTAATCACATATCG
72706965 ATGCCAC-TGTCCCAGACAG-GGTCTTACACGTAATCACATATCG
1 ATGCCACATGT-CCAGAC-GTGGTCTTACACGTAATCACATATCG
*
72707008 ATGCCA-ATGTCCTAAACGTGGTCTTACACGTAATCACATATCG
1 ATGCCACATGTCC-AGACGTGGTCTTACACGTAATCACATATCG
* *
72707051 ATGCCAC-TGTGCTAGATAG-GGTCTTACAC-TAATCACATATC
1 ATGCCACATGT-CCAGA-CGTGGTCTTACACGTAATCACATATC
72707092 AAAAATCCTA
Statistics
Matches: 181, Mismatches: 16, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
40 38 0.21
41 2 0.01
42 17 0.09
43 120 0.66
44 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCACATGTCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:72707072 original size:86 final size:83
Alignment explanation
Indices: 72706902--72707093 Score: 280
Period size: 86 Copynumber: 2.3 Consensus size: 83
72706892 CTTAGACGTC
*
72706902 GTCTTACACGTAATCACATATCAATGCCACTGTCCCAAACAGGGTACACGTAATCACATATCGAT
1 GTCTTACACGTAATCACATATCAATGCCAATGTCCCAAACAGGGTACACGTAATCACATATCGAT
72706967 GCCACTGTCCCAGACAGG
66 GCCACTGTCCCAGACAGG
* *
72706985 GTCTTACACGTAATCACATATCGATGCCAATGTCCTAAAC-GTGGTCTTACACGTAATCACATAT
1 GTCTTACACGTAATCACATATCAATGCCAATGTCCCAAACAG-GG---TACACGTAATCACATAT
* * *
72707049 CGATGCCACTGTGCTAGATAGG
62 CGATGCCACTGTCCCAGACAGG
72707071 GTCTTACAC-TAATCACATATCAA
1 GTCTTACACGTAATCACATATCAA
72707094 AAATCCTATG
Statistics
Matches: 98, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
82 1 0.01
83 39 0.40
85 13 0.13
86 45 0.46
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (83 bp):
GTCTTACACGTAATCACATATCAATGCCAATGTCCCAAACAGGGTACACGTAATCACATATCGAT
GCCACTGTCCCAGACAGG
Found at i:72707072 original size:126 final size:126
Alignment explanation
Indices: 72706850--72707091 Score: 317
Period size: 126 Copynumber: 1.9 Consensus size: 126
72706840 TGCCAACATT
* * * *
72706850 CCAGACGTGGTCTTATATGTAACCACATATCGATGCCAACATCTTAGACGTCGTCTTACACGTAA
1 CCAGACGTGGTCTTACACGTAACCACATATCGATGCCAACATCCTAAACGTCGTCTTACACGTAA
72706915 TCACATATCAATGCCACTGTCCCAAACAGGG-TACACGTAATCACATATCGATGCCACTGTC
66 TCACATATCAATGCCACTGTCCCAAACAGGGTTACAC-TAATCACATATCGATGCCACTGTC
* ** *
72706976 CCAGACAG-GGTCTTACACGTAATCACATATCGATGCCAATGTCCTAAACGTGGTCTTACACGTA
1 CCAGAC-GTGGTCTTACACGTAACCACATATCGATGCCAACATCCTAAACGTCGTCTTACACGTA
* * * * *
72707040 ATCACATATCGATGCCACTGTGCTAGATAGGGTCTTACACTAATCACATATC
65 ATCACATATCAATGCCACTGTCCCAAACAGGG--TTACACTAATCACATATC
72707092 AAAAATCCTA
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
126 81 0.82
127 1 0.01
128 12 0.12
129 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (126 bp):
CCAGACGTGGTCTTACACGTAACCACATATCGATGCCAACATCCTAAACGTCGTCTTACACGTAA
TCACATATCAATGCCACTGTCCCAAACAGGGTTACACTAATCACATATCGATGCCACTGTC
Found at i:72707906 original size:6 final size:6
Alignment explanation
Indices: 72707895--72707920 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
72707885 TGAATGTTGC
72707895 TTTCTT TTTCTT TTTCTT TTTCTT TT
1 TTTCTT TTTCTT TTTCTT TTTCTT TT
72707921 GGTATTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:72711143 original size:68 final size:69
Alignment explanation
Indices: 72711068--72711195 Score: 195
Period size: 68 Copynumber: 1.9 Consensus size: 69
72711058 CAATAGATTG
* * *
72711068 AATATTAAATTAAATTTAATACTTATCTTAAT-AGTATTTTATTAATTTAATATTAAAATAAATT
1 AATATTAAATTAAATGTAATACTTATATTAATAAGTATTATATTAATTTAATATTAAAATAAATT
72711132 TCTT
66 TCTT
* * *
72711136 AATATTAAATTTAATGTAATATTTATATTGATAAGTATTATATTAATTTAATATTAAAAT
1 AATATTAAATTAAATGTAATACTTATATTAATAAGTATTATATTAATTTAATATTAAAAT
72711196 GATTAAGTTC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
68 27 0.51
69 26 0.49
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (69 bp):
AATATTAAATTAAATGTAATACTTATATTAATAAGTATTATATTAATTTAATATTAAAATAAATT
TCTT
Found at i:72711203 original size:32 final size:32
Alignment explanation
Indices: 72711100--72711203 Score: 77
Period size: 32 Copynumber: 3.1 Consensus size: 32
72711090 TTATCTTAAT
* *
72711100 AGTATTTTATTAATTTAATATTAAAATAAATTTCTTA
1 AGTATTATATTAATTTAATATTAAAAT-GA----TTA
* * * *
72711137 A-TATTAAATTTAATGTAATATTTATATTGA-TA
1 AGTATTATA-TTAATTTAATA-TTAAAATGATTA
72711169 AGTATTATATTAATTTAATATTAAAATGATTA
1 AGTATTATATTAATTTAATATTAAAATGATTA
72711201 AGT
1 AGT
72711204 TCAATCATAT
Statistics
Matches: 53, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
31 7 0.13
32 18 0.34
33 6 0.11
36 5 0.09
37 12 0.23
38 5 0.09
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (32 bp):
AGTATTATATTAATTTAATATTAAAATGATTA
Found at i:72714967 original size:71 final size:71
Alignment explanation
Indices: 72714881--72715044 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72714871 CGATTTGTCT
72714881 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72714946 CTTTCA
66 CTTTCA
72714952 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72715017 CTTTCA
66 CTTTCA
72715023 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72715045 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72715082 original size:71 final size:70
Alignment explanation
Indices: 72714881--72715078 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
72714871 CGATTTGTCT
* * *
72714881 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72714946 CTTTCA
65 CTTTCA
* * *
72714952 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72715017 CTTTCA
65 CTTTCA
* *
72715023 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
72715079 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72722531 original size:71 final size:71
Alignment explanation
Indices: 72722445--72722608 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72722435 CGATTTGTCT
72722445 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72722510 CTTTCA
66 CTTTCA
72722516 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72722581 CTTTCA
66 CTTTCA
72722587 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72722609 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72733619 original size:71 final size:71
Alignment explanation
Indices: 72733530--72733692 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
72733520 CGATTTGTCT
72733530 CGTAGCTC-CTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
72733594 CTTTCA
66 CTTTCA
* *
72733600 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCATGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
72733665 CTTTCA
66 CTTTCA
72733671 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72733693 GATACATCTC
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
70 8 0.09
71 82 0.91
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:72733730 original size:71 final size:70
Alignment explanation
Indices: 72733530--72733726 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
72733520 CGATTTGTCT
* * *
72733530 CGTAGCTC-CTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
72733594 CTTTCA
65 CTTTCA
* * * * *
72733600 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCATGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
72733665 CTTTCA
65 CTTTCA
* *
72733671 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
72733727 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 9 0.08
71 85 0.73
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:72735070 original size:23 final size:25
Alignment explanation
Indices: 72735020--72735070 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
72735010 TATAATCGAG
72735020 AACCCTTCATAAAGAAGATAATAACA
1 AACCCTTCATAAAGAAGA-AATAACA
*
72735046 AACCCTTCATAAA-AAG-GATAACA
1 AACCCTTCATAAAGAAGAAATAACA
72735069 AA
1 AA
72735071 TCAGGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 8 0.33
25 3 0.12
26 13 0.54
ACGTcount: A:0.55, C:0.20, G:0.08, T:0.18
Consensus pattern (25 bp):
AACCCTTCATAAAGAAGAAATAACA
Found at i:72737673 original size:48 final size:48
Alignment explanation
Indices: 72737621--72737806 Score: 212
Period size: 48 Copynumber: 3.9 Consensus size: 48
72737611 GTGTTCCAAG
* * *
72737621 CATGGTCTTATAGTAGCTCACATATCGATGCCGATGCCATGTCCCACA
1 CATGGTCTTACAGTAGCTCACATATCAAGGCCGATGCCATGTCCCACA
* * *
72737669 CATGGTCTTACATTGGCTCACATATCGAGGCCGATGCCATGTCCCACA
1 CATGGTCTTACAGTAGCTCACATATCAAGGCCGATGCCATGTCCCACA
* * ** * *
72737717 CATGGTCTTACACTACCTCACATATCAAGGCTAATGCCATGT-CTAGGA
1 CATGGTCTTACAGTAGCTCACATATCAAGGCCGATGCCATGTCCCA-CA
* * * *
72737765 CGTGTTCTTACAGTAGCTCTCATATCAATGCCGATGCCATGT
1 CATGGTCTTACAGTAGCTCACATATCAAGGCCGATGCCATGT
72737807 TCCTTTACAC
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
47 2 0.02
48 115 0.98
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGGTCTTACAGTAGCTCACATATCAAGGCCGATGCCATGTCCCACA
Found at i:72737758 original size:96 final size:97
Alignment explanation
Indices: 72737552--72737759 Score: 231
Period size: 96 Copynumber: 2.1 Consensus size: 97
72737542 AGAGTAAGAT
* * * ** * * *
72737552 GCTAATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATATATCGATGTTGATGTCGTGTTC
1 GCTAATGCCATGTCCCACACATGGCCTTACACTGGC-CTCACATATCGAGGCCGATGCCATGTCC
* * * * *
72737617 CAAGCATGGTCTTATAGTAGCTCACATATCGAT
65 CAAGCATGGTCTTACACTACCTCACATATCAAG
** * *
72737650 GCCGATGCCATGTCCCACACATGGTCTTACATTGG-CTCACATATCGAGGCCGATGCCATGTCCC
1 GCTAATGCCATGTCCCACACATGGCCTTACACTGGCCTCACATATCGAGGCCGATGCCATGTCCC
72737714 ACA-CATGGTCTTACACTACCTCACATATCAAG
66 A-AGCATGGTCTTACACTACCTCACATATCAAG
72737746 GCTAATGCCATGTC
1 GCTAATGCCATGTC
72737760 TAGGACGTGT
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
96 59 0.66
97 1 0.01
98 30 0.33
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (97 bp):
GCTAATGCCATGTCCCACACATGGCCTTACACTGGCCTCACATATCGAGGCCGATGCCATGTCCC
AAGCATGGTCTTACACTACCTCACATATCAAG
Found at i:72741353 original size:91 final size:90
Alignment explanation
Indices: 72741192--72741369 Score: 293
Period size: 91 Copynumber: 2.0 Consensus size: 90
72741182 TTGCTTATGA
* *
72741192 GTTGGGTTTTTAAAGTAAGATACTTCTCTAATGTGGATTTTTTGCGGGAGGAACTGGGATCTCAC
1 GTTGGGTTTTTAAAGTAAGATACTTCTCTAATGTGGATTTTTTACGGGAGGAACTGGGATCTAAC
72741257 ATGTTTTATACCTAGCGTAGCATTTG
66 ATGTTTTATACCTAGC-TAGCATTTG
* * *
72741283 GTTGGGTTTTTAAAGTAAGATACTTTTCTAATGTGGATTTTTTATGGGTGGAACTGGGATCTAAC
1 GTTGGGTTTTTAAAGTAAGATACTTCTCTAATGTGGATTTTTTACGGGAGGAACTGGGATCTAAC
*
72741348 CTGTTTTATACCTAGCTAGCAT
66 ATGTTTTATACCTAGCTAGCAT
72741370 CTAGTGCTTT
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
90 6 0.07
91 75 0.93
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40
Consensus pattern (90 bp):
GTTGGGTTTTTAAAGTAAGATACTTCTCTAATGTGGATTTTTTACGGGAGGAACTGGGATCTAAC
ATGTTTTATACCTAGCTAGCATTTG
Found at i:72744980 original size:6 final size:6
Alignment explanation
Indices: 72744947--72744979 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
72744937 AATTTAGCCT
*
72744947 TTTTTA TTTTCA TTTTCA TTTTCA TTTT-A TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTT
72744980 TTTGTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTCA
Found at i:72751978 original size:21 final size:21
Alignment explanation
Indices: 72751947--72752026 Score: 119
Period size: 21 Copynumber: 3.9 Consensus size: 21
72751937 AATGCAAACA
72751947 AGGGC-ACACGCCCGTGTGGG
1 AGGGCGACACGCCCGTGTGGG
*
72751967 AGGGCAACACGCCCGTGTGGG
1 AGGGCGACACGCCCGTGTGGG
72751988 AGGGCGACACGCCC-TGTGGG
1 AGGGCGACACGCCCGTGTGGG
* *
72752008 AGGGCGACATGCCTGTGTG
1 AGGGCGACACGCCCGTGTG
72752027 TCCTCTTAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
20 23 0.42
21 32 0.58
ACGTcount: A:0.16, C:0.28, G:0.44, T:0.12
Consensus pattern (21 bp):
AGGGCGACACGCCCGTGTGGG
Found at i:72752006 original size:41 final size:41
Alignment explanation
Indices: 72751947--72752026 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
72751937 AATGCAAACA
72751947 AGGGCACACGCCCGTGTGGGAGGGCAACACGCCCGTGTGGG
1 AGGGCACACGCCCGTGTGGGAGGGCAACACGCCCGTGTGGG
* * *
72751988 AGGGCGACACGCCC-TGTGGGAGGGCGACATGCCTGTGTG
1 AGGGC-ACACGCCCGTGTGGGAGGGCAACACGCCCGTGTG
72752027 TCCTCTTAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 27 0.77
42 8 0.23
ACGTcount: A:0.16, C:0.28, G:0.44, T:0.12
Consensus pattern (41 bp):
AGGGCACACGCCCGTGTGGGAGGGCAACACGCCCGTGTGGG
Found at i:72760972 original size:48 final size:47
Alignment explanation
Indices: 72760853--72761134 Score: 251
Period size: 48 Copynumber: 5.9 Consensus size: 47
72760843 GGTAAGATGC
* * *
72760853 CGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATC-GGTGT
1 CGATGCCATGTC-CAGACATGGTCTTACACTAGCTCACAT-ATCAAG-GT
* * * * *
72760902 TGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGT
1 CGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATATCAAGGT
* * * * *
72760950 CGATGCCATGTCCTAGAGATGGTCTTACACTAGTTCTCATATAAATGT
1 CGATGCCATGTCC-AGACATGGTCTTACACTAGCTCACATATCAAGGT
* * * * *
72760998 TGATGCCATGTTCCAAACATGGTCTTTCACTGGCTCACATATCAAGGC
1 CGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATATCAAGGT
* * * * *
72761046 CGATGCCATGTCCCAGACATGGTCTTACCCTAGATCTCATATAAATGT
1 CGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATCAAGGT
* * *
72761094 CGATGTCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATA
72761135 ACCCTAGTAT
Statistics
Matches: 184, Mismatches: 43, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
47 4 0.02
48 141 0.77
49 37 0.20
50 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (47 bp):
CGATGCCATGTCCAGACATGGTCTTACACTAGCTCACATATCAAGGT
Found at i:72761037 original size:96 final size:96
Alignment explanation
Indices: 72760851--72761134 Score: 390
Period size: 96 Copynumber: 2.9 Consensus size: 96
72760841 AGGGTAAGAT
* * ***
72760851 GCCGATGCCATGT-CTCAGACATGGTCTTACACTGGCTCTCATAATCGGTGTTGATGCCATGTTC
1 GCCGATGCCATGTCCT-AGACATGGTCTTACACTAGATCTCAT-ATAAATGTTGATGCCATGTTC
* * * *
72760915 CAAACATGGTCTTACACTAGCCCACATGTCGAG
64 CAAACATGGTCTTACACTGGCTCACATATCAAG
* * *
72760948 GTCGATGCCATGTCCTAGAGATGGTCTTACACTAGTTCTCATATAAATGTTGATGCCATGTTCCA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGATCTCATATAAATGTTGATGCCATGTTCCA
*
72761013 AACATGGTCTTTCACTGGCTCACATATCAAG
66 AACATGGTCTTACACTGGCTCACATATCAAG
* * * *
72761044 GCCGATGCCATGTCCCAGACATGGTCTTACCCTAGATCTCATATAAATGTCGATGTCATGTTCCA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGATCTCATATAAATGTTGATGCCATGTTCCA
72761109 AACATGGTCTTACACTGGCTCACATA
66 AACATGGTCTTACACTGGCTCACATA
72761135 ACCCTAGTAT
Statistics
Matches: 166, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
96 129 0.78
97 35 0.21
98 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (96 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTAGATCTCATATAAATGTTGATGCCATGTTCCA
AACATGGTCTTACACTGGCTCACATATCAAG
Found at i:72761116 original size:144 final size:145
Alignment explanation
Indices: 72760854--72761124 Score: 316
Period size: 144 Copynumber: 1.9 Consensus size: 145
72760844 GTAAGATGCC
* * * ** *
72760854 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATCGGTGTTGATGCCATGTTCCAAA
1 GATGCCATGTCTCAAACATGGTCTTACACTGGCTCACATAATCAGTGCCGATGCCATGTCCCAAA
* * ** * *
72760919 CATGGTCTTACACTAGCCCACATGTCGAGGTCGATGCCATGTCCTAGAGATGGTCTTACACTAGT
66 CATGGTCTTACACTAGACCACATATAAAGGTCGATGCCATGTCCTAAACATGGTCTTACACTAGT
72760984 TCTCATATAAATGTT
131 TCTCATATAAATGTT
*
72760999 GATGCCATGT-TCCAAACATGGTCTTTCACTGGCTCACAT-ATCAAG-GCCGATGCCATGTCCCA
1 GATGCCATGTCT-CAAACATGGTCTTACACTGGCTCACATAATC-AGTGCCGATGCCATGTCCCA
* * * * * *
72761061 GACATGGTCTTACCCTAGATCTCATATAAATGTCGATGTCATGTTCC-AAACATGGTCTTACACT
64 AACATGGTCTTACACTAGACCACATATAAAGGTCGATGCCATG-TCCTAAACATGGTCTTACACT
72761125 GGCTCACATA
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
144 66 0.63
145 38 0.37
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (145 bp):
GATGCCATGTCTCAAACATGGTCTTACACTGGCTCACATAATCAGTGCCGATGCCATGTCCCAAA
CATGGTCTTACACTAGACCACATATAAAGGTCGATGCCATGTCCTAAACATGGTCTTACACTAGT
TCTCATATAAATGTT
Found at i:72762974 original size:48 final size:48
Alignment explanation
Indices: 72762872--72763122 Score: 279
Period size: 48 Copynumber: 5.2 Consensus size: 48
72762862 GATGTTGATA
* * * * * * *
72762872 CCATGTCCCAGACATGGCCTTACACTGGCTCTCATATATCGGTGTCGATG
1 CCATGTTCCACACATGGTCTTACACTAG--CTCACATATCGATGCCGATG
*
72762922 CCATGTTCCA-AGCATGGTCTTATACTAGCTCACATATCGATGCCGATG
1 CCATGTTCCACA-CATGGTCTTACACTAGCTCACATATCGATGCCGATG
* * * * *
72762970 CCATGTCCCATACAGGGTCTTACACTAGCTCACATATCGAGGCCAATG
1 CCATGTTCCACACATGGTCTTACACTAGCTCACATATCGATGCCGATG
* * *
72763018 CCATGTCCCACACATGGTCTTACACTAGCTCACATATCGAGGCTGATG
1 CCATGTTCCACACATGGTCTTACACTAGCTCACATATCGATGCCGATG
* * * * *
72763066 CCATGTCCCAGACATGTTCTTACACTAGCTCTCATATCAATGCCGATG
1 CCATGTTCCACACATGGTCTTACACTAGCTCACATATCGATGCCGATG
72763114 CCATGTTCC
1 CCATGTTCC
72763123 TTTACACTGG
Statistics
Matches: 176, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
48 152 0.86
49 2 0.01
50 22 0.12
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
CCATGTTCCACACATGGTCTTACACTAGCTCACATATCGATGCCGATG
Found at i:72766202 original size:40 final size:39
Alignment explanation
Indices: 72766152--72766376 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 39
72766142 TCGAATGATG
* * * * *
72766152 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAATGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
72766192 TCCGGACTAAGACCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
72766231 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
72766271 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
**
72766311 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
72766352 -CCGGGCTATGTCCCGAAGCCATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
72766377 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 27 0.16
40 140 0.83
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72766383 original size:40 final size:40
Alignment explanation
Indices: 72766152--72766348 Score: 276
Period size: 40 Copynumber: 5.0 Consensus size: 40
72766142 TCGAATGATG
* * * * *
72766152 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAATGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
72766192 TCCGGACTAAGA-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
72766231 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
72766271 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
72766311 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
72766349 TAACCGGGCT
Statistics
Matches: 146, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 28 0.19
40 118 0.81
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72768690 original size:22 final size:22
Alignment explanation
Indices: 72768665--72768707 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
72768655 AAAGCCGAGG
72768665 AGCTCAGTAT-GGAGAAAAGAAA
1 AGCTCA-TATGGGAGAAAAGAAA
* *
72768687 AGCTGATATGGGAGCAAAGAA
1 AGCTCATATGGGAGAAAAGAA
72768708 GTTTCGTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (22 bp):
AGCTCATATGGGAGAAAAGAAA
Found at i:72782336 original size:40 final size:40
Alignment explanation
Indices: 72782292--72782476 Score: 273
Period size: 40 Copynumber: 4.6 Consensus size: 40
72782282 CGGGCTAAGT
* * *
72782292 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAC
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGAC
* *
72782332 CCGAAGGCATTTGTGCGAGTTACTAAATTCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAC
*
72782372 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAC
** *
72782412 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAC
72782452 CCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTA
72782477 TAACCGGGCT
Statistics
Matches: 134, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 127 0.95
41 7 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAC
Found at i:72782484 original size:40 final size:39
Alignment explanation
Indices: 72782286--72782504 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 39
72782276 TGATGTCGGG
* * *
72782286 CTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGA
1 CTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGA
* *
72782325 CTAAGACCCGAAGGCATTTGTGCGAGTTACTAAATTCGGA
1 CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
72782365 CTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
1 CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
*
72782405 CTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGG
1 CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
* *
72782445 TTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGG
1 CTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGA
* *
72782485 CTATGTCTCGAAGGAATTTG
1 CTAAGTC-CGAAGGCATTTG
72782505 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
39 7 0.04
40 147 0.90
41 9 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (39 bp):
CTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
Found at i:72790094 original size:48 final size:48
Alignment explanation
Indices: 72789972--72790306 Score: 347
Period size: 48 Copynumber: 6.9 Consensus size: 48
72789962 AAAGGGTAAG
* * * * *
72789972 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAT-A
1 ATGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCA
* *
72790019 TTAGTGTCAATGTCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCA
1 --A-TGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCA
* * *
72790070 ATGCCAATGCCATGTTCCAAACATGGTTTTACACTGGCTCACATATCGAGA
1 ATGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATC---A
* * *
72790121 ATG---ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTA
1 ATGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * *
72790166 ATGCCGATGCCA-GATTCTAAACATGGTCTTACACTAGCTCACATATCG
1 ATGCCAATGCCATG-TTCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * *
72790214 AGGCCAATGGCATGTCCCAAACATGGTTTTACACTAGCTCTCATATCA
1 ATGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * *
72790262 ATGCCGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATA
1 ATGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATA
72790307 ACCCTAGTAT
Statistics
Matches: 236, Mismatches: 40, Indels: 21
0.79 0.13 0.07
Matches are distributed among these distances:
45 4 0.02
47 1 0.00
48 185 0.78
49 3 0.01
50 38 0.16
51 5 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (48 bp):
ATGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCA
Done.