Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 236 of 438
Found at i:73178052 original size:37 final size:37
Alignment explanation
Indices: 73177994--73178138 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
73177984 TAGCTCGAAT
* *
73177994 AATCCCCACACGTAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
73178031 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
73178068 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
73178105 AATCTCCACACGTAGTCATCGGGTGTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
73178139 ATATATTTCC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:73178322 original size:48 final size:48
Alignment explanation
Indices: 73178270--73178517 Score: 401
Period size: 48 Copynumber: 5.2 Consensus size: 48
73178260 TCGCCACAAT
* *
73178270 ATATACACATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
**
73178318 ATAT--ATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
73178364 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
73178412 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
73178460 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
73178508 ACATATATAT
1 ATATACATAT
73178518 ATTTATCTTG
Statistics
Matches: 185, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 42 0.23
48 143 0.77
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.36
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:73181988 original size:29 final size:30
Alignment explanation
Indices: 73181921--73182084 Score: 114
Period size: 29 Copynumber: 5.7 Consensus size: 30
73181911 CCACTGACCG
* **
73181921 ATCTCGCACACATAGTG-CTCGGTTGAA-GA
1 ATCTCGCACACACAGTGCCTCAATT-AACGA
*
73181950 A-CTCGCACACACAGTGCCTCAATT-ACCA
1 ATCTCGCACACACAGTGCCTCAATTAACGA
* * ** *
73181978 ATCTCGCACACATAATG-CTCGGTTAAAGGA
1 ATCTCGCACACACAGTGCCTCAATT-AACGA
73182008 AT-TCGCACACACAGTGCCTCAATT-ACTG-
1 ATCTCGCACACACAGTGCCTCAATTAAC-GA
* **
73182036 ATCTCGCACACATAGTG-CTCGGTTAACGA
1 ATCTCGCACACACAGTGCCTCAATTAACGA
*
73182065 AT-TTGCACACACAGTGCCTC
1 ATCTCGCACACACAGTGCCTC
73182085 TAATCATTCG
Statistics
Matches: 104, Mismatches: 20, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
27 1 0.01
28 42 0.40
29 52 0.50
30 9 0.09
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (30 bp):
ATCTCGCACACACAGTGCCTCAATTAACGA
Found at i:73181988 original size:57 final size:57
Alignment explanation
Indices: 73181921--73182084 Score: 249
Period size: 58 Copynumber: 2.9 Consensus size: 57
73181911 CCACTGACCG
*
73181921 ATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTACCA
1 ATCTCGCACACATAGTGCTCGGTT-AACGAATTCGCACACACAGTGCCTCAATTACCA
* * **
73181978 ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACTG
1 ATCTCGCACACATAGTGCTCGGTT-AACGAATTCGCACACACAGTGCCTCAATTACCA
*
73182036 ATCTCGCACACATAGTGCTCGGTTAACGAATTTGCACACACAGTGCCTC
1 ATCTCGCACACATAGTGCTCGGTTAACGAATTCGCACACACAGTGCCTC
73182085 TAATCATTCG
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
57 48 0.49
58 50 0.51
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (57 bp):
ATCTCGCACACATAGTGCTCGGTTAACGAATTCGCACACACAGTGCCTCAATTACCA
Found at i:73182032 original size:58 final size:55
Alignment explanation
Indices: 73181921--73182106 Score: 236
Period size: 58 Copynumber: 3.3 Consensus size: 55
73181911 CCACTGACCG
* *
73181921 ATCTCGCACACATAGTGCTCGGTTGAAGAACTCGCACACACAGTGCCTCAATTACC
1 ATCTCGCACACATAATGCTCGGTT-AAGAATTCGCACACACAGTGCCTCAATTACC
*
73181977 AATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACTG
1 -ATCTCGCACACATAATGCTCGGTT-AA-GAATTCGCACACACAGTGCCTCAATTAC-C
* *
73182036 ATCTCGCACACATAGTGCTCGGTTAACGAATTTGCACACACAGTGCCTCTAA-T--C
1 ATCTCGCACACATAATGCTCGGTTAA-GAATTCGCACACACAGTGCCTC-AATTACC
73182090 AT-TCGCACACATAATGC
1 ATCTCGCACACATAATGC
73182107 CCATATTCAT
Statistics
Matches: 117, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
53 14 0.12
54 2 0.02
57 49 0.42
58 52 0.44
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (55 bp):
ATCTCGCACACATAATGCTCGGTTAAGAATTCGCACACACAGTGCCTCAATTACC
Found at i:73182299 original size:43 final size:43
Alignment explanation
Indices: 73182238--73182415 Score: 304
Period size: 43 Copynumber: 4.2 Consensus size: 43
73182228 CCTTGCTCGA
** *
73182238 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
73182281 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
73182324 ATCACCGCCATGAAGCCTGCTAGGCACGAA-GCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
73182366 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
73182409 ATCACCG
1 ATCACCG
73182416 AGTTTCATGC
Statistics
Matches: 127, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
42 40 0.31
43 87 0.69
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:73182382 original size:85 final size:86
Alignment explanation
Indices: 73182238--73182415 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 86
73182228 CCTTGCTCGA
* *
73182238 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACGAAGCCTGCTA
1 ATCACCGCCATGAAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACGAAGCCTGCTA
73182303 GGCACGAAGGCCCGAATACAT
66 GGCACGAAGGCCCGAATACAT
73182324 ATCACCGCCATGAAGCCTGCTAGGCACGAAG-CCCGAATACATATCACCGGCACGAAGCCTGCTA
1 ATCACCGCCATGAAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACGAAGCCTGCTA
73182388 GGCACGAAGGCCCGAATACAT
66 GGCACGAAGGCCCGAATACAT
73182409 ATCACCG
1 ATCACCG
73182416 AGTTTCATGC
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
85 61 0.68
86 29 0.32
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (86 bp):
ATCACCGCCATGAAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACGAAGCCTGCTA
GGCACGAAGGCCCGAATACAT
Found at i:73184213 original size:37 final size:36
Alignment explanation
Indices: 73184035--73184209 Score: 314
Period size: 36 Copynumber: 4.8 Consensus size: 36
73184025 TAGCTCGAAT
* *
73184035 AATCCCCACACGTAGTTATCGGGTCTTACCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCGGACAA
73184071 AATCTCCACACGTAGTCATCGGGTCTTACCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCGGACAA
73184107 AATCTCCACACGTAGTCATCGGGTCTTACCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCGGACAA
*
73184143 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTA-CCGGACAA
73184180 AATCTCCACACGTAGTCATCGGGTCTTACC
1 AATCTCCACACGTAGTCATCGGGTCTTACC
73184210 CGGAATAATC
Statistics
Matches: 135, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
36 100 0.74
37 35 0.26
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (36 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCGGACAA
Found at i:73184406 original size:48 final size:48
Alignment explanation
Indices: 73184354--73184595 Score: 412
Period size: 48 Copynumber: 5.0 Consensus size: 48
73184344 ATATATACAC
*
73184354 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** *
73184402 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
73184450 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
73184498 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
73184546 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
73184594 AT
1 AT
73184596 ATTTATCTTG
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 181 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:73184454 original size:96 final size:96
Alignment explanation
Indices: 73184346--73184595 Score: 455
Period size: 96 Copynumber: 2.6 Consensus size: 96
73184336 CGGCCACAAT
* *
73184346 ATATACACATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATATATCTCATAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATAC
*
73184411 ATATTTCATGTTAGCCATTCGGCTTTACCAC
66 ATATTTCATATTAGCCATTCGGCTTTACCAC
73184442 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATAC
73184507 ATATTTCATATTAGCCATTCGGCTTTACCAC
66 ATATTTCATATTAGCCATTCGGCTTTACCAC
* *
73184538 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATATAT
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATAT
73184596 ATTTATCTTG
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 149 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.36
Consensus pattern (96 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATAC
ATATTTCATATTAGCCATTCGGCTTTACCAC
Found at i:73189231 original size:41 final size:41
Alignment explanation
Indices: 73189186--73189303 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73189176 TGAAAGATAA
73189186 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73189227 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73189257 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73189298 ATGTAG
1 ATGTAG
73189304 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73189242 original size:71 final size:71
Alignment explanation
Indices: 73189154--73189317 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73189144 GAGATGTATC
73189154 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73189219 AGGACA
66 AGGACA
73189225 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73189290 AGGACA
66 AGGACA
73189296 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73189318 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73196802 original size:41 final size:41
Alignment explanation
Indices: 73196757--73196874 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73196747 TGAAAGATAA
73196757 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73196798 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73196828 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73196869 ATGTAG
1 ATGTAG
73196875 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73196813 original size:71 final size:71
Alignment explanation
Indices: 73196725--73196888 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73196715 GAGATGTATC
73196725 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73196790 AGGACA
66 AGGACA
73196796 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73196861 AGGACA
66 AGGACA
73196867 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73196889 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73206622 original size:21 final size:21
Alignment explanation
Indices: 73206596--73206642 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
73206586 AATAAACGAT
73206596 GTTGGAAAGCTTTTAGGTATA
1 GTTGGAAAGCTTTTAGGTATA
73206617 GTTGGAAAGCTTTTAGGTATA
1 GTTGGAAAGCTTTTAGGTATA
73206638 GTTGG
1 GTTGG
73206643 CACGCCATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.26, C:0.04, G:0.32, T:0.38
Consensus pattern (21 bp):
GTTGGAAAGCTTTTAGGTATA
Found at i:73213073 original size:171 final size:170
Alignment explanation
Indices: 73212801--73213108 Score: 413
Period size: 171 Copynumber: 1.8 Consensus size: 170
73212791 CAAATTAGAA
*
73212801 ATGCATTAACTTGATCAAATTACTAAAATTTGCATCCTTATTGTGCCATCATCAAATCAACTTGA
1 ATGCATTAACTTGATCAAATTACTAAAATTTACATCCTTATTGTGCCATCATCAAATCAACTTGA
* * *
73212866 CGATGAACACCAATCAACCAATAAACAACCGCCAAAAGTCCTAAGAGACTTATCATATCAAATGA
66 CGATGAACACCAATCAACCAATAAACAACCGCCAAAAGCCCCAAGAGACTCATCATATC-AATGA
73212931 TGCACAAAAGATCAAGTCTTAGATGCAAAAACAAACTAGCG
130 TGCACAAAAGATCAAGTCTTAGATGCAAAAACAAACTAGCG
* * * * *
73212972 ATGCATTAATTTGATCATATTA-TAGAAATTTATAT-TTTAGTTGTGCTATCATCAAATCAACTT
1 ATGCATTAACTTGATCAAATTACTA-AAATTTACATCCTTA-TTGTGCCATCATCAAATCAACTT
* * ** ** * *
73213035 GACGATGAATATCAATCAATTAATAAACAATTGCCAAAAGCCCCAAGAGGCTCATTATATCAATG
64 GACGATGAACACCAATCAACCAATAAACAACCGCCAAAAGCCCCAAGAGACTCATCATATCAATG
*
73213100 ATGTACAAA
129 ATGCACAAA
73213109 GGTAAAATCT
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
170 17 0.15
171 100 0.85
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (170 bp):
ATGCATTAACTTGATCAAATTACTAAAATTTACATCCTTATTGTGCCATCATCAAATCAACTTGA
CGATGAACACCAATCAACCAATAAACAACCGCCAAAAGCCCCAAGAGACTCATCATATCAATGAT
GCACAAAAGATCAAGTCTTAGATGCAAAAACAAACTAGCG
Found at i:73214242 original size:19 final size:20
Alignment explanation
Indices: 73214226--73214264 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
73214216 CTTATTTTTT
73214226 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
73214245 TATTTATTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
73214265 ATATATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:73214271 original size:19 final size:19
Alignment explanation
Indices: 73214230--73214272 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
73214220 TTTTTTTATT
*
73214230 TATTTTTTGTTTTAATATT
1 TATTTTTTGTTTTAATATA
73214249 TATTTTTATGTTTTAA-ATA
1 TATTTTT-TGTTTTAATATA
73214268 TATTT
1 TATTT
73214273 GATTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (19 bp):
TATTTTTTGTTTTAATATA
Found at i:73214289 original size:25 final size:23
Alignment explanation
Indices: 73214244--73214290 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
73214234 TTTTGTTTTA
* *
73214244 ATATTTATTTTTATGTTTTAAAT
1 ATATTTATTTTTATATGTTAAAT
73214267 ATATTTGATTTATTATATGTTAAA
1 ATATTT-ATTT-TTATATGTTAAA
73214291 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 4 0.20
25 10 0.50
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (23 bp):
ATATTTATTTTTATATGTTAAAT
Found at i:73214849 original size:15 final size:15
Alignment explanation
Indices: 73214831--73214860 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
73214821 AAATTTTAAT
73214831 TTTTTATAATTTATA
1 TTTTTATAATTTATA
73214846 TTTTTATAATTTATA
1 TTTTTATAATTTATA
73214861 GAGGATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:73215344 original size:29 final size:30
Alignment explanation
Indices: 73215312--73215382 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
73215302 TACATATTGT
73215312 TTTTAAAAATATAAAAAATTA-ATTTAATA
1 TTTTAAAAATATAAAAAATTATATTTAATA
* *
73215341 TTTTAAAAATA-ATAAAATTATATTTTATA
1 TTTTAAAAATATAAAAAATTATATTTAATA
**
73215370 TCATAAAAATATA
1 TTTTAAAAATATA
73215383 TAATTTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 8 0.22
29 27 0.75
30 1 0.03
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (30 bp):
TTTTAAAAATATAAAAAATTATATTTAATA
Found at i:73219619 original size:13 final size:13
Alignment explanation
Indices: 73219601--73219626 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73219591 AAACAGGATA
73219601 GGGAAGCAATAAC
1 GGGAAGCAATAAC
73219614 GGGAAGCAATAAC
1 GGGAAGCAATAAC
73219627 AATTGTAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.31, T:0.08
Consensus pattern (13 bp):
GGGAAGCAATAAC
Found at i:73225291 original size:16 final size:15
Alignment explanation
Indices: 73225267--73225296 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
73225257 AACTGTTTTA
73225267 TTACAAATTTCACTC
1 TTACAAATTTCACTC
73225282 TTACATAATTTCACT
1 TTACA-AATTTCACT
73225297 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:73225631 original size:50 final size:50
Alignment explanation
Indices: 73225499--73225785 Score: 279
Period size: 50 Copynumber: 5.7 Consensus size: 50
73225489 TGAAGCTATG
* **** *
73225499 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACC-AACAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
* *
73225548 CGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
* ** * * * ***
73225598 TGATACATGTAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGTTGTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATC
* * * * * *
73225649 GGGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACCTAACTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
*
73225699 TGGTACACATAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC
*** * *
73225751 TTAAACACATAGTAGCCTGCACATAGTGCTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
73225786 TGTGTTCTCA
Statistics
Matches: 191, Mismatches: 43, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
49 35 0.18
50 85 0.45
51 36 0.19
52 35 0.18
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
Found at i:73225682 original size:101 final size:101
Alignment explanation
Indices: 73225557--73225738 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
73225547 CCGGTACACG
* ** *
73225557 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATGTAGTAGCCTGTACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACATAGTAGCCTGCACTT
73225622 AGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
* * * * *
73225658 TAGTAGCCTGCACTTAGTATTACACATGCGACCTAACTATCTGGTACACATAGTAGCTTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACATAGTAGCCTGCACTT
73225723 AGTACTACACACGTGA
66 AGTACTACACACGTGA
73225739 CCTAAAACCA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACATAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
Found at i:73225740 original size:151 final size:151
Alignment explanation
Indices: 73225500--73225785 Score: 421
Period size: 151 Copynumber: 1.9 Consensus size: 151
73225490 GAAGCTATGT
*
73225500 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCGGTACACATAGTAGCC
* ** * *
73225565 TGCACTTAGTACTACACACGTGACCT-AACCATCTGATACATGTAGTAGCCTGTACTTAGTACTA
66 TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGTAGCCTGCACATAGTACTA
73225629 CACACGTGATCGAAGTTGTCG
131 CACACGTGATCGAAGTTGTCG
* * * * *
73225650 GGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACCTAACTATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACC-AACAATCCGGTACACATAGTAGC
* * *
73225715 TTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGCCTGCACATAGTGC
65 CTGCACTTAGTACTACACACGTGACCT-AAACCATCTGAAACACATAGTAGCCTGCACATAGTAC
73225780 TACACA
129 TACACA
73225786 TGTGTTCTCA
Statistics
Matches: 119, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
150 38 0.32
151 46 0.39
153 35 0.29
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCGGTACACATAGTAGCC
TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGTAGCCTGCACATAGTACTA
CACACGTGATCGAAGTTGTCG
Found at i:73229282 original size:45 final size:45
Alignment explanation
Indices: 73229232--73229319 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
73229222 CCAAAACATG
73229232 TGCCACATACATCATGAACTCAGACCATAACTT-AATAAGTTCAAA
1 TGCCACATACATCATGAACTCAGACCATAA-TTCAATAAGTTCAAA
* *
73229277 TGCCACATATATCATGAACTCAGACCATAATTCAATGAGTTCA
1 TGCCACATACATCATGAACTCAGACCATAATTCAATAAGTTCA
73229320 GATCACATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (45 bp):
TGCCACATACATCATGAACTCAGACCATAATTCAATAAGTTCAAA
Found at i:73230873 original size:3 final size:3
Alignment explanation
Indices: 73230865--73230909 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
73230855 CTTCGCTTCC
73230865 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
73230910 GTTGGTTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:73231503 original size:25 final size:25
Alignment explanation
Indices: 73231456--73231504 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
73231446 TACTTAAACC
*
73231456 TTTTAGATATAATAGTATGTATATT
1 TTTTAGATATAATAGTATATATATT
*
73231481 TTTTAGATTTATATA-TATATATAT
1 TTTTAGATATA-ATAGTATATATAT
73231505 ATATATGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (25 bp):
TTTTAGATATAATAGTATATATATT
Found at i:73235495 original size:19 final size:20
Alignment explanation
Indices: 73235452--73235505 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
73235442 ATATGTCAAG
73235452 ATGCACTTTGTGTGCCAAAT
1 ATGCACTTTGTGTGCCAAAT
*
73235472 ATGCACTTTGTGTGCC-AGT
1 ATGCACTTTGTGTGCCAAAT
*
73235491 ATGCACTTTATGTGC
1 ATGCACTTTGTGTGC
73235506 TAGTTTACCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (20 bp):
ATGCACTTTGTGTGCCAAAT
Found at i:73236468 original size:28 final size:28
Alignment explanation
Indices: 73236437--73236518 Score: 146
Period size: 28 Copynumber: 2.9 Consensus size: 28
73236427 TCCCGTTCAA
*
73236437 TTTCAACATAATAAGTGCAGACACTTAT
1 TTTCAACATAATAAATGCAGACACTTAT
73236465 TTTCAACATAATAAATGCAGACACTTAT
1 TTTCAACATAATAAATGCAGACACTTAT
*
73236493 TTCCAACATAATAAATGCAGACACTT
1 TTTCAACATAATAAATGCAGACACTT
73236519 TATCAATCAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (28 bp):
TTTCAACATAATAAATGCAGACACTTAT
Found at i:73239690 original size:55 final size:53
Alignment explanation
Indices: 73239601--73239776 Score: 162
Period size: 55 Copynumber: 3.3 Consensus size: 53
73239591 CTAAAGTGTC
* * * * * *
73239601 ATATGTTAAA-TGTGGCTTTGTGGAGGTTCAGGTGGACTGTACGGAGATTCTTAT
1 ATATGTTAAATTATGTCTTTGTAGAGGCT-AGGTGGGCTGTATGGAGATT-TTAT
* *
73239655 ATATGTTAAATTATGTCTTTGTAGAGGCTAGGGTGGGTTGTATTGAGATTTCTAT
1 ATATGTTAAATTATGTCTTTGTAGAGGCTA-GGTGGGCTGTATGGAGATTT-TAT
** * *
73239710 ATATGTT-AATTATGGT-TTTACAGAGGCTTAGGTGGGCTGTTTGGAGA-TTTCT
1 ATATGTTAAATTAT-GTCTTTGTAGAGGC-TAGGTGGGCTGTATGGAGATTTTAT
73239762 ATATGTTAAATTATG
1 ATATGTTAAATTATG
73239777 AATTTGCGGA
Statistics
Matches: 102, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
52 10 0.10
53 8 0.08
54 41 0.40
55 43 0.42
ACGTcount: A:0.24, C:0.07, G:0.28, T:0.41
Consensus pattern (53 bp):
ATATGTTAAATTATGTCTTTGTAGAGGCTAGGTGGGCTGTATGGAGATTTTAT
Found at i:73239745 original size:54 final size:56
Alignment explanation
Indices: 73239643--73239804 Score: 178
Period size: 54 Copynumber: 3.0 Consensus size: 56
73239633 TGGACTGTAC
*
73239643 GGAGA-TTCTTATATATGTTAAATTAT-GTCTTTGTAGAGGC-TAGGGTGGGTTGTATT
1 GGAGATTTC-TATATATGTTAAATTATGGT-TTTGCAGAGGCTTA-GGTGGGTTGTATT
* *
73239699 -GAGATTTCTATATATGTT-AATTATGGTTTTACAGAGGCTTAGGTGGGCTGT-TT
1 GGAGATTTCTATATATGTTAAATTATGGTTTTGCAGAGGCTTAGGTGGGTTGTATT
** * *
73239752 GGAGATTTC--TATATGTTAAATTATGAATTTGCGGAGGCTTGGGTGGGTTGTAT
1 GGAGATTTCTATATATGTTAAATTATGGTTTTGCAGAGGCTTAGGTGGGTTGTAT
73239805 GAAGGTTTCT
Statistics
Matches: 91, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
52 8 0.09
53 29 0.32
54 33 0.36
55 18 0.20
56 3 0.03
ACGTcount: A:0.23, C:0.06, G:0.29, T:0.42
Consensus pattern (56 bp):
GGAGATTTCTATATATGTTAAATTATGGTTTTGCAGAGGCTTAGGTGGGTTGTATT
Found at i:73239814 original size:53 final size:52
Alignment explanation
Indices: 73239654--73239820 Score: 165
Period size: 53 Copynumber: 3.1 Consensus size: 52
73239644 GAGATTCTTA
** * *
73239654 TATATGTTAAATTATGTCTTTGTAGAGGCTAGGGTGGGTTGTATTGAGATTTC
1 TATATGTTAAATTATGAATTTGCAGAGGCTTGGGTGGGTTGTA-TGAGATTTC
** * * * *
73239707 TATATATGTT-AATTATGGTTTTACAGAGGCTTAGGTGGGCTGTTTGGAGATTTC
1 --TATATGTTAAATTATGAATTTGCAGAGGCTTGGGTGGGTTGTAT-GAGATTTC
* *
73239761 TATATGTTAAATTATGAATTTGCGGAGGCTTGGGTGGGTTGTATGAAGGTTTC
1 TATATGTTAAATTATGAATTTGCAGAGGCTTGGGTGGGTTGTATG-AGATTTC
*
73239814 TCTATGT
1 TATATGT
73239821 ATTAAACTAT
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
52 9 0.10
53 41 0.45
54 34 0.37
55 8 0.09
ACGTcount: A:0.22, C:0.07, G:0.29, T:0.43
Consensus pattern (52 bp):
TATATGTTAAATTATGAATTTGCAGAGGCTTGGGTGGGTTGTATGAGATTTC
Found at i:73240189 original size:22 final size:22
Alignment explanation
Indices: 73240164--73240217 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
73240154 AAATTATTAA
*
73240164 CATATTTAATTTTAATTAATTT
1 CATATTTAATTTTAATAAATTT
* * *
73240186 CATAATAAATTTTCATAAATTT
1 CATATTTAATTTTAATAAATTT
73240208 --TATTTAATTT
1 CATATTTAATTT
73240218 CAACAGATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 8 0.31
22 18 0.69
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (22 bp):
CATATTTAATTTTAATAAATTT
Found at i:73241894 original size:60 final size:60
Alignment explanation
Indices: 73241801--73241924 Score: 248
Period size: 60 Copynumber: 2.1 Consensus size: 60
73241791 CATTTAATTG
73241801 TCACTTTATTACTTGATAACGATTGTGTACACTTGCACATTTCCATCGTTCTAAGACTAC
1 TCACTTTATTACTTGATAACGATTGTGTACACTTGCACATTTCCATCGTTCTAAGACTAC
73241861 TCACTTTATTACTTGATAACGATTGTGTACACTTGCACATTTCCATCGTTCTAAGACTAC
1 TCACTTTATTACTTGATAACGATTGTGTACACTTGCACATTTCCATCGTTCTAAGACTAC
73241921 TCAC
1 TCAC
73241925 ACTTCATCGC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 64 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (60 bp):
TCACTTTATTACTTGATAACGATTGTGTACACTTGCACATTTCCATCGTTCTAAGACTAC
Found at i:73242114 original size:32 final size:33
Alignment explanation
Indices: 73242078--73242158 Score: 94
Period size: 32 Copynumber: 2.5 Consensus size: 33
73242068 TATATGATTC
*
73242078 TGCGACCTGTATCTATGA-GAGCTGTACAATTT
1 TGCGAACTGTATCTATGATGAGCTGTACAATTT
* * * *
73242110 TGCGAACTATATCTGT-ATGAGTTGTACGATTT
1 TGCGAACTGTATCTATGATGAGCTGTACAATTT
*
73242142 TGTGAACTGTATCTATG
1 TGCGAACTGTATCTATG
73242159 CTAGTTGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
31 1 0.03
32 38 0.97
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (33 bp):
TGCGAACTGTATCTATGATGAGCTGTACAATTT
Found at i:73242165 original size:32 final size:30
Alignment explanation
Indices: 73242084--73242178 Score: 82
Period size: 32 Copynumber: 3.0 Consensus size: 30
73242074 ATTCTGCGAC
* * *
73242084 CTGTATCTATGAGAGCTGTACAATTTTGCGAA
1 CTGTATCTAT--GAGTTGTACGATTTTGTGAA
*
73242116 CTATATCTGTATGAGTTGTACGATTTTGTGAA
1 CTGTATC--TATGAGTTGTACGATTTTGTGAA
* *
73242148 CTGTATCTATGCTAGTTGTATGATTATGTGA
1 CTGTATCTATG--AGTTGTACGATTTTGTGA
73242179 GCCGTATGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
30 4 0.08
32 45 0.87
34 3 0.06
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (30 bp):
CTGTATCTATGAGTTGTACGATTTTGTGAA
Found at i:73242214 original size:17 final size:17
Alignment explanation
Indices: 73242161--73242218 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
73242151 TATCTATGCT
73242161 AGTTGTATGATTATGTG
1 AGTTGTATGATTATGTG
** **
73242178 AGCCGTATGATGGTGTG
1 AGTTGTATGATTATGTG
*
73242195 AGTTGTATCATTATGTG
1 AGTTGTATGATTATGTG
73242212 AGTTGTA
1 AGTTGTA
73242219 CTAAATTGTG
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.22, C:0.05, G:0.31, T:0.41
Consensus pattern (17 bp):
AGTTGTATGATTATGTG
Found at i:73245199 original size:2 final size:2
Alignment explanation
Indices: 73245192--73245217 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
73245182 AACTGTTTAG
73245192 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
73245218 TAATAATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73246642 original size:48 final size:48
Alignment explanation
Indices: 73246580--73246744 Score: 294
Period size: 48 Copynumber: 3.4 Consensus size: 48
73246570 TATATATGTG
73246580 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
73246628 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGGTATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
73246676 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
73246724 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
73246745 GTGATTCGGC
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:73246967 original size:37 final size:37
Alignment explanation
Indices: 73246917--73247019 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
73246907 GGAAATATAT
73246917 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73246954 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
73246991 TTCGGGTAAGACCGGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
73247020 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:73254198 original size:40 final size:40
Alignment explanation
Indices: 73254105--73254362 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
73254095 AAGCCAAGTA
* * *
73254105 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
73254143 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73254183 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73254223 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
73254263 CCTTTGGGACTTAGCCCGGATATAATAACTCATACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73254303 CCTTCGGGACTTAGCCCGGA-ACTATTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
73254344 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73254363 TTATCATCCA
Statistics
Matches: 199, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 143 0.72
41 24 0.12
42 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73262169 original size:49 final size:49
Alignment explanation
Indices: 73262097--73262266 Score: 322
Period size: 49 Copynumber: 3.5 Consensus size: 49
73262087 ATGATATACA
*
73262097 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTATG
*
73262146 TATATGTGATAAGGTCTAATGGCCGATGTGGTGGATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTATG
73262195 TATATGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTATG
73262244 TATATGTGATAAGGCCTAATGGC
1 TATATGTGATAAGGCCTAATGGC
73262267 TAATGTAAAA
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 118 1.00
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.31
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTATG
Found at i:73262423 original size:37 final size:37
Alignment explanation
Indices: 73262368--73262452 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
73262358 GGAATATGTT
* * *
73262368 CCGGGTGAGACCCAATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCAATGACTACATATGGAGATTATGA
* *
73262405 CCGGGTAAGACCCGATGACTACATATGGAGATTATGT
1 CCGGGTAAGACCCAATGACTACATATGGAGATTATGA
73262442 CCGGGTAAGAC
1 CCGGGTAAGAC
73262453 TTCTTTTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCAATGACTACATATGGAGATTATGA
Found at i:73266209 original size:40 final size:40
Alignment explanation
Indices: 73266116--73266332 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
73266106 AAGCCAAGTA
* * *
73266116 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
73266154 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73266194 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73266234 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* **
73266274 CCTTCGGGACTTAGCCCGGATATAATAACTCATACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73266314 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73266333 TTATCATCCA
Statistics
Matches: 167, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 138 0.83
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73268974 original size:40 final size:40
Alignment explanation
Indices: 73268866--73269075 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73268856 CGGGATTTAA
* * * * *
73268866 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
73268906 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73268946 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73268986 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73269026 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73269066 CCGGATATAT
1 CCGGATATAT
73269076 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:73277108 original size:40 final size:40
Alignment explanation
Indices: 73277000--73277209 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73276990 CGGGATTTAA
* * * * *
73277000 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
73277040 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73277080 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73277120 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73277160 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73277200 CCGGATATAT
1 CCGGATATAT
73277210 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:73288323 original size:40 final size:40
Alignment explanation
Indices: 73288254--73288473 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
73288244 AAACCAAGTA
* * *
73288254 CCTTCGGG-TTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
73288292 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
73288332 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
73288372 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
73288412 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
73288452 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
73288474 CAATCCGAAT
Statistics
Matches: 170, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
38 8 0.05
39 18 0.11
40 144 0.85
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:73292947 original size:40 final size:40
Alignment explanation
Indices: 73292902--73293071 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 40
73292892 CGGAATACAA
*
73292902 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
73292942 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
73292982 CCGGATTTAACAACTTGCACGGA-GTCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATG-CCTTCGGGTCTTAGC
* * ** * * **
73293022 CCAGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTCAAT
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
73293062 CCGGATATAA
1 CCGGATATAA
73293072 TTCGGGTCTC
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
39 2 0.02
40 100 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:73293079 original size:23 final size:23
Alignment explanation
Indices: 73293049--73293096 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
73293039 CACAATTGCC
73293049 TTCGGGTCTCAATCCGGATATAA
1 TTCGGGTCTCAATCCGGATATAA
73293072 TTCGGGTCTCAATCCGGATATAA
1 TTCGGGTCTCAATCCGGATATAA
73293095 TT
1 TT
73293097 ACTAGCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (23 bp):
TTCGGGTCTCAATCCGGATATAA
Found at i:73295481 original size:144 final size:145
Alignment explanation
Indices: 73295115--73295718 Score: 674
Period size: 144 Copynumber: 4.2 Consensus size: 145
73295105 TATGTGTGCC
* * * * ** *
73295115 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATAAGAGCCAATGTAAGACCATGTTT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACGATGTTGCAAGAGCCAGTGTAAGACCATGTTT
* * ** * * * *
73295180 GGAACATGGCATCGGCGA-TGTTGCGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCA-T-CG
66 GGGACATGGCATCGGC-ATTGATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATTGCC
** * *
73295242 GTATTGATATGTGCGCT
130 ACATTGATA-GAGAGCT
* * * *
73295259 AGTGTAAGACCATGTCTGGGACA-GGCAT-TAGCGATGTTGCGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGA-CGATGTTGCAAGAGCCAGTGTAAGACCATGTT
* *
73295322 TGGGACATGGTATCGGCATTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGC
65 TGGGACATGGCATCGGCATTGATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATT-GC
73295387 CACATT-ATA-AGAGCT
129 CACATTGATAGAGAGCT
*
73295402 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTGCAAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACGATGTTGCAAGAGCCAGTGTAAGACCATGTTT
* *
73295467 GGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATGTTTGGGACATGGC-TTCGAC
66 GGGACATGGCATCGGCATTGATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATT-G-C
* *
73295531 CACATT-ATA-AGAACC
129 CACATTGATAGAGAGCT
* * * * * *
73295546 AGTGTAAGACCATATTTGGAATATAGCATCAACGATGTTGTAAGAGCCAGAGTAAGACCATGTTT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACGATGTTGCAAGAGCCAGTGTAAGACCATGTTT
* * * * *
73295611 GAGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGGCATTGCATTG--G
66 GGGACATGGCATCGGCATTGATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATTGCCA
* *
73295674 TATTGAGACGAGAGCT
131 CATTGATA-GAGAGCT
73295690 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACCATGTTTGGAACATGGCAT
73295719 TGGCAATTCA
Statistics
Matches: 397, Mismatches: 51, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
141 3 0.01
142 4 0.01
143 109 0.27
144 271 0.68
145 6 0.02
146 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (145 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACGATGTTGCAAGAGCCAGTGTAAGACCATGTTT
GGGACATGGCATCGGCATTGATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATTGCCA
CATTGATAGAGAGCT
Found at i:73295719 original size:48 final size:48
Alignment explanation
Indices: 73295112--73295723 Score: 460
Period size: 48 Copynumber: 12.8 Consensus size: 48
73295102 TGATATGTGT
* * *
73295112 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATA--AGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCG-GCAT-TGATACGAGA
* * * *
73295160 GCCAATGTAAGACCATGTTTGGAACATGGCATCGGCGA-TGTTGCGAGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATTGATACGAGA
* * * * * *
73295208 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGATATGTGC
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATACGAGA
* * ** * *
73295256 GCTAGTGTAAGACCATGTCTGGGACA-GGCATTAGCGA-TGTTGCGAGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATTGATACGAGA
* * * *
73295303 GCCAGTGTAAGACCATGTTTGGGACATGGTATCGGCATTGATATGTGT
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATACGAGA
* **
73295351 GCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCCACATT-ATA--AGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCA-T--CGGCATTGATACGAGA
* * * * * * *
73295399 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTGCAAGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATACGAGA
* * *
73295447 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTGC
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATACGAGA
* * *
73295495 GCTAGTGTAAGACCATGTTTGGGACATGGCTTCGACCACATT-ATA--AGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCG---GCATTGATACGAGA
* * * * * **
73295543 ACCAGTGTAAGACCATATTTGGAATATAGCATCAACGATGTTG-TA--AGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC-A--TTGATACGAGA
* * * * *
73295591 GCCAGAGTAAGACCATGTTTGAGACATGGCATCGGCATTGATATGTGC
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATACGAGA
* * * * * * *
73295639 GCTAGTGTAAGACCATGTCTGGGGCATTGCATTGGTATTGAGACGAGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATACGAGA
* * *
73295687 GCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
73295724 ATTCACCCTC
Statistics
Matches: 440, Mismatches: 101, Indels: 46
0.75 0.17 0.08
Matches are distributed among these distances:
45 10 0.02
46 6 0.01
47 40 0.09
48 368 0.84
49 1 0.00
50 6 0.01
51 9 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATACGAGA
Found at i:73300060 original size:48 final size:48
Alignment explanation
Indices: 73299988--73300154 Score: 185
Period size: 48 Copynumber: 3.5 Consensus size: 48
73299978 TGAGATTCTA
* * * *
73299988 TGTAAGACCATGTCTGGTAGATGGCATCGGGGATAATATGTATGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTATGCTAG
* * * *
73300036 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATGTATGTGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTATGCTAG
* * * *
73300084 TGTAAGACCATGTTTAGGACATGGCATCGACGATGATATGTGGATTC-A-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGT--ATGCTAG
*
73300132 TGTAAGACCATGTCGGGGACATG
1 TGTAAGACCATGTCTGGGACATG
73300155 ACATTGGTAC
Statistics
Matches: 98, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
48 96 0.98
49 1 0.01
50 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTATGCTAG
Found at i:73302911 original size:21 final size:21
Alignment explanation
Indices: 73302887--73302926 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
73302877 GCCACACGAC
*
73302887 CATGTAACTCTGTCACACAGG
1 CATGTAACTCAGTCACACAGG
**
73302908 CATGTGTCTCAGTCACACA
1 CATGTAACTCAGTCACACA
73302927 ACCGTGTGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (21 bp):
CATGTAACTCAGTCACACAGG
Found at i:73307867 original size:53 final size:53
Alignment explanation
Indices: 73307786--73307887 Score: 132
Period size: 53 Copynumber: 1.9 Consensus size: 53
73307776 TTTCTTTTTA
* * * * * *
73307786 AACTTACCGTTGCCTTGTCTTGACATGGTCTTACGTGGTATCTTTGCCTCATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGGAACTTTGCCTCATG
* *
73307839 AACTCACCATTGCCATGCCTTGGCATGGTCTTATGTGGGAACTTTGCCT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGGAACTTTGCCT
73307888 TATAGTAGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 41 1.00
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGGAACTTTGCCTCATG
Found at i:73308363 original size:29 final size:29
Alignment explanation
Indices: 73308330--73308388 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
73308320 CCTTAACTCT
73308330 AACTTTGGCAAAATTACGA-TTTTGCCCTA
1 AACTTTGGCAAAATTAC-ACTTTTGCCCTA
* * *
73308359 AACTTTTGCATATTTACACTTTTGCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCTA
73308388 A
1 A
73308389 GCTCGAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (29 bp):
AACTTTGGCAAAATTACACTTTTGCCCTA
Found at i:73315343 original size:53 final size:53
Alignment explanation
Indices: 73315257--73315464 Score: 195
Period size: 53 Copynumber: 3.9 Consensus size: 53
73315247 TTTTGTTTTT
* * *
73315257 AAACTTACCATTTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAG
* * * *
73315310 GAACTCACCATTGCCATGCCTT-AGCATGGTCTTACATGGGATCCTTGCCTTATAG
1 AAACTTACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTGCC-T-TAG
* ** * * * * *
73315365 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCGTT-G
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAG
* * *
73315417 TAAAACTTACCAATGCCATGCCTTGGCATGATCTTACTTGGTATCCTT
1 --AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
73315465 AAACCTTAAT
Statistics
Matches: 123, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 2 0.02
53 43 0.35
54 38 0.31
55 39 0.32
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAG
Found at i:73315410 original size:55 final size:53
Alignment explanation
Indices: 73315270--73315464 Score: 178
Period size: 55 Copynumber: 3.6 Consensus size: 53
73315260 CTTACCATTT
*
73315270 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGGAACTCACCAATG
* * * ** * *
73315323 CCATGCCTT-AGCATGGTCTTACATGGGATCCTTGCCTTATAGTAGTTTATCAATG
1 CCATGTCTTGA-CATGGTCTTACATGGTATCCTTGCC-T-TAGGAACTCACCAATG
* * * * *
73315378 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCGTT-GTAAAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAG--GAACTCACCAATG
* * * *
73315432 CCATGCCTTGGCATGATCTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGTATCCTT
73315465 AAACCTTAAT
Statistics
Matches: 113, Mismatches: 23, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 2 0.02
53 33 0.29
54 38 0.34
55 39 0.35
56 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGGAACTCACCAATG
Found at i:73333414 original size:29 final size:29
Alignment explanation
Indices: 73333372--73333430 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
73333362 AGTCAATGAG
73333372 TAGAAGAACATACCTTTAATCCAAGTTGA
1 TAGAAGAACATACCTTTAATCCAAGTTGA
*
73333401 TAGAAGAACATACCTTTGATCCAAGTTGA
1 TAGAAGAACATACCTTTAATCCAAGTTGA
73333430 T
1 T
73333431 TTAATGGTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (29 bp):
TAGAAGAACATACCTTTAATCCAAGTTGA
Found at i:73340399 original size:80 final size:80
Alignment explanation
Indices: 73340263--73340467 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
73340253 ATTGAATGAT
* * ** * * *
73340263 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
73340327 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
73340343 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
73340408 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
73340423 ATCCGGGCTAAGA-CCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
73340468 TTATATTCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 31 0.29
80 73 0.69
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:73340452 original size:39 final size:40
Alignment explanation
Indices: 73340261--73340467 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
73340251 CAATTGAATG
* * ** * **
73340261 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * **
73340301 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGT-GACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG-TT
* *
73340341 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
73340381 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
73340421 CTATCCGGGCTAAGA-CCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
73340460 ATATCCGG
1 ATATCCGG
73340468 TTATATTCCG
Statistics
Matches: 140, Mismatches: 23, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
39 32 0.23
40 103 0.74
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:73348319 original size:40 final size:40
Alignment explanation
Indices: 73348260--73348467 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
73348250 CAATTGAATG
* * * *
73348260 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
73348300 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
73348340 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
73348380 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
73348420 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
73348460 ATATCCGG
1 ATATCCGG
73348468 TTATATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:73348398 original size:80 final size:80
Alignment explanation
Indices: 73348262--73348467 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
73348252 ATTGAATGAT
* * ** * * *
73348262 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
73348326 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
73348342 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
73348407 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
73348422 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
73348468 TTATATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:73351648 original size:22 final size:22
Alignment explanation
Indices: 73351582--73351775 Score: 125
Period size: 22 Copynumber: 9.0 Consensus size: 22
73351572 ACATTATACC
*
73351582 AGTAGGCACCGAAGTGC---TG
1 AGTAGGCACCGAAGTGCTAATT
* * * *
73351601 AGCAGGCACCTTAA-TGCAAATC
1 AGTAGGCACC-GAAGTGCTAATT
*
73351623 AGTAGACACCGAAGTGCTAATT
1 AGTAGGCACCGAAGTGCTAATT
* *
73351645 AGTAGGCATC-ACAGTGCAAATCT
1 AGTAGGCACCGA-AGTGCTAAT-T
* *
73351668 -GTAGGCATCGAAGTGCTAATC
1 AGTAGGCACCGAAGTGCTAATT
** * *
73351689 AGTACACACCGTAGTGCAAATT
1 AGTAGGCACCGAAGTGCTAATT
** *
73351711 AGTACACACCGTAGTGCTAATT
1 AGTAGGCACCGAAGTGCTAATT
*
73351733 AGTAGGCACC-ATAGTGCAAATT
1 AGTAGGCACCGA-AGTGCTAATT
73351755 AGTAGGCACCGTAA-TGCTAAT
1 AGTAGGCACCG-AAGTGCTAAT
73351776 CCCGTACAAG
Statistics
Matches: 138, Mismatches: 25, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
19 12 0.09
20 2 0.01
21 3 0.02
22 117 0.85
23 3 0.02
24 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (22 bp):
AGTAGGCACCGAAGTGCTAATT
Found at i:73351680 original size:44 final size:44
Alignment explanation
Indices: 73351604--73351775 Score: 186
Period size: 44 Copynumber: 3.9 Consensus size: 44
73351594 AGTGCTGAGC
* * *
73351604 AGGCACCTTAATGCAAATCAGTAGACACCGAAGTGCTAATTAGT
1 AGGCACCATAGTGCAAATTAGTAGACACCGAAGTGCTAATTAGT
* * * * *
73351648 AGGCATCACAGTGCAAATCT-GTAGGCATCGAAGTGCTAATCAGT
1 AGGCACCATAGTGCAAAT-TAGTAGACACCGAAGTGCTAATTAGT
** * * *
73351692 ACACACCGTAGTGCAAATTAGTACACACCGTAGTGCTAATTAGT
1 AGGCACCATAGTGCAAATTAGTAGACACCGAAGTGCTAATTAGT
*
73351736 AGGCACCATAGTGCAAATTAGTAGGCACCGTAA-TGCTAAT
1 AGGCACCATAGTGCAAATTAGTAGACACCG-AAGTGCTAAT
73351776 CCCGTACAAG
Statistics
Matches: 101, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
43 1 0.01
44 99 0.98
45 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (44 bp):
AGGCACCATAGTGCAAATTAGTAGACACCGAAGTGCTAATTAGT
Found at i:73351749 original size:66 final size:66
Alignment explanation
Indices: 73351604--73351767 Score: 161
Period size: 66 Copynumber: 2.5 Consensus size: 66
73351594 AGTGCTGAGC
* * * * ** *
73351604 AGGCACCTTAATGCAAATCAGTAGACACCGAAGTGCTAATTAGTAGGCATCACAGTGCAAATCTG
1 AGGCACCATAGTGCAAATCAGTAGACACCGTAGTGCAAATTAGTACACACCACAGTGCAAATCTG
73351669 T
66 T
* * * ** *
73351670 AGGCATCGA-AGTGCTAATCAGTACACACCGTAGTGCAAATTAGTACACACCGTAGTGCTAAT-T
1 AGGCA-CCATAGTGCAAATCAGTAGACACCGTAGTGCAAATTAGTACACACCACAGTGCAAATCT
73351733 AGT
65 -GT
* *
73351736 AGGCACCATAGTGCAAATTAGTAGGCACCGTA
1 AGGCACCATAGTGCAAATCAGTAGACACCGTA
73351768 ATGCTAATCC
Statistics
Matches: 77, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
65 3 0.04
66 73 0.95
67 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (66 bp):
AGGCACCATAGTGCAAATCAGTAGACACCGTAGTGCAAATTAGTACACACCACAGTGCAAATCTG
T
Found at i:73356594 original size:29 final size:29
Alignment explanation
Indices: 73356560--73356617 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
73356550 TATTTCTCAA
73356560 CCAATTTGGCATCAACCTACACTCAACAT
1 CCAATTTGGCATCAACCTACACTCAACAT
* *
73356589 CCAATTTGGCATCATCCTACACTCGACAT
1 CCAATTTGGCATCAACCTACACTCAACAT
73356618 TGTGCATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.31, C:0.34, G:0.09, T:0.26
Consensus pattern (29 bp):
CCAATTTGGCATCAACCTACACTCAACAT
Found at i:73357729 original size:25 final size:25
Alignment explanation
Indices: 73357646--73357723 Score: 97
Period size: 25 Copynumber: 3.1 Consensus size: 25
73357636 ATGTATGCTT
*
73357646 ATACGAGCTGTAAATCGGTAAGCTC
1 ATACGAGCTGAAAATCGGTAAGCTC
73357671 ATACGAGCT-AAGAATCGGTAAGCT-
1 ATACGAGCTGAA-AATCGGTAAGCTC
* *
73357695 TTCACGAGCTGCAAATCGGTAAGCTC
1 AT-ACGAGCTGAAAATCGGTAAGCTC
73357721 ATA
1 ATA
73357724 TAAGCTTTGG
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
24 2 0.04
25 41 0.91
26 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (25 bp):
ATACGAGCTGAAAATCGGTAAGCTC
Found at i:73360136 original size:16 final size:16
Alignment explanation
Indices: 73360085--73360136 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
73360075 TGAATTACTT
*
73360085 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
* * * *
73360101 ACTATAGCTCTGTTCA
1 ATTACAGCTCTATTCC
73360117 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
73360133 ATTA
1 ATTA
73360137 TAGTGAATCA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.29, C:0.27, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:73371346 original size:15 final size:15
Alignment explanation
Indices: 73371316--73371344 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73371306 ACTATTAATA
73371316 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
73371331 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
73371345 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:73372639 original size:36 final size:37
Alignment explanation
Indices: 73372558--73372652 Score: 129
Period size: 37 Copynumber: 2.6 Consensus size: 37
73372548 GTCTCAGATA
* *
73372558 TTACAATTATATGTTTATTTTTTATTAGTCCAAAAGG
1 TTACAATTATGTGTTTATTTTTTATTACTCCAAAAGG
*
73372595 TTACAATTATGTGTTTATTTTTTATTACTCCTAAA-G
1 TTACAATTATGTGTTTATTTTTTATTACTCCAAAAGG
* * *
73372631 TTATAATTATGCGTTAATTTTT
1 TTACAATTATGTGTTTATTTTT
73372653 ATTTAATGGA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 20 0.38
37 32 0.62
ACGTcount: A:0.29, C:0.08, G:0.09, T:0.53
Consensus pattern (37 bp):
TTACAATTATGTGTTTATTTTTTATTACTCCAAAAGG
Found at i:73373407 original size:25 final size:25
Alignment explanation
Indices: 73373360--73373407 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
73373350 TACACTAATT
* *
73373360 AGAGTTTAAGTGGGAAACTAAAAAC
1 AGAGTTTAAATGGGAAACGAAAAAC
73373385 AGAGTTTAAATGGGAGAA-GAAAA
1 AGAGTTTAAATGGGA-AACGAAAA
73373408 GCCGAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.50, C:0.04, G:0.27, T:0.19
Consensus pattern (25 bp):
AGAGTTTAAATGGGAAACGAAAAAC
Found at i:73376005 original size:49 final size:49
Alignment explanation
Indices: 73375952--73376178 Score: 301
Period size: 49 Copynumber: 4.6 Consensus size: 49
73375942 ATCTAGTATG
73375952 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
* ** * *
73376001 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACA
* * * * *
73376051 CATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACA
*
73376102 CATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
** *
73376151 TGTAGTAGCCTGCACTTAATACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
73376179 CGTGACCTCA
Statistics
Matches: 154, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 69 0.45
50 47 0.31
51 38 0.25
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
Found at i:73376125 original size:101 final size:98
Alignment explanation
Indices: 73375952--73376184 Score: 313
Period size: 100 Copynumber: 2.3 Consensus size: 98
73375942 ATCTAGTATG
* * *
73375952 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGTACACATAGTAGCCTGCACT
** *
73376017 TAGTACTACACATGTGACCTAACCATCTGATACA
66 TAGTACTACACATACGACC-AACCATCCGATACA
* *
73376051 CATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCCGGTACACATAGTAGCCTGCA
** *
73376116 CTTAGTACTACACATACGACCAATTATCCGGTACA
64 CTTAGTACTACACATACGACCAACCATCCGATACA
** *
73376151 TGTAGTAGCCTGCACTTAATACTACACACGTGAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGAC
73376185 CTCACAATAG
Statistics
Matches: 118, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 32 0.27
100 43 0.36
101 43 0.36
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGTACACATAGTAGCCTGCACT
TAGTACTACACATACGACCAACCATCCGATACA
Found at i:73376462 original size:27 final size:27
Alignment explanation
Indices: 73376432--73376485 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73376422 TCATACAACC
* *
73376432 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
73376459 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
73376486 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:73376776 original size:80 final size:80
Alignment explanation
Indices: 73376635--73376797 Score: 272
Period size: 80 Copynumber: 2.0 Consensus size: 80
73376625 CACGAACTTA
* ****
73376635 CCTCGTATACGAAAATGGTCATTTTTACCATTTTGTCCACAACTTGGTATTTTTTTGATTTTAGC
1 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGCCAATTTTAGC
73376700 CCGAATTTCAATTTT
66 CCGAATTTCAATTTT
73376715 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGCCAATTTTAGC
1 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGCCAATTTTAGC
*
73376780 CCGAATTTTAATTTT
66 CCGAATTTCAATTTT
73376795 CCT
1 CCT
73376798 TACTCTATCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (80 bp):
CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGCCAATTTTAGC
CCGAATTTCAATTTT
Found at i:73376918 original size:30 final size:30
Alignment explanation
Indices: 73376863--73376919 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
73376853 AAAATCATAT
*
73376863 TTTGGCAAACTTACAATTTTTCCCCTAAAC
1 TTTGGCAAAATTACAATTTTTCCCCTAAAC
*
73376893 TTTGTCAAAATTAC-ATTTTTGCCCCTA
1 TTTGGCAAAATTACAATTTTT-CCCCTA
73376920 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTGGCAAAATTACAATTTTTCCCCTAAAC
Found at i:73382024 original size:50 final size:49
Alignment explanation
Indices: 73381952--73382140 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 49
73381942 ATAGACAAGG
* *
73381952 TTATCCGGTA-AGCATAGTAGCCTGCACTTAGTACTACACATGTAACCTAA
1 TTATCCGGTACA-CGTAGTAGCCTGCACTTAGTACTACACATATAACC-AA
** * * * *
73382002 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATAATCAAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATATAA-CCAA
* * * **
73382052 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAA
1 -TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATATAACCAA
*
73382102 TTATCCGGTACATGT-GTAGCCTGCACTTAGTACTACACA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
73382141 CGTGACCTCA
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
48 24 0.21
49 11 0.10
50 41 0.36
51 38 0.33
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (49 bp):
TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATATAACCAA
Found at i:73382422 original size:27 final size:27
Alignment explanation
Indices: 73382392--73382445 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73382382 TCATACAACC
* *
73382392 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
73382419 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
73382446 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:73382724 original size:78 final size:79
Alignment explanation
Indices: 73382595--73382755 Score: 279
Period size: 78 Copynumber: 2.0 Consensus size: 79
73382585 CACGAACTTA
* *
73382595 CCTCGTATACGAAAATGGTCATTTTTACCATTTTGTCCACAACTTGGTATTTT-TGATTTTAGCC
1 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTACGATTTTAGCC
73382659 CGAATTTCAATTTT
66 CGAATTTCAATTTT
73382673 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTACCGATTTTAGC
1 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTA-CGATTTTAGC
*
73382738 CCGAATTTTAATTTT
65 CCGAATTTCAATTTT
73382753 CCT
1 CCT
73382756 TACTCTATCA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
78 52 0.67
80 26 0.33
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.42
Consensus pattern (79 bp):
CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTACGATTTTAGCC
CGAATTTCAATTTT
Found at i:73383878 original size:22 final size:23
Alignment explanation
Indices: 73383851--73383927 Score: 106
Period size: 22 Copynumber: 3.5 Consensus size: 23
73383841 GGGTATCTAC
*
73383851 AAATCAAATC-TCTAAGATTACA
1 AAATCATATCTTCTAAGATTACA
73383873 AAATCATATCTTCTAAGATTAC-
1 AAATCATATCTTCTAAGATTACA
*
73383895 ATATCATATCTTCTAAGATTAC-
1 AAATCATATCTTCTAAGATTACA
*
73383917 ATATCATATCT
1 AAATCATATCT
73383928 AAGGTTGCAT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
22 41 0.79
23 11 0.21
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (23 bp):
AAATCATATCTTCTAAGATTACA
Found at i:73383899 original size:17 final size:17
Alignment explanation
Indices: 73383899--73383949 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
73383889 GATTACATAT
73383899 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
* *
73383916 CATATCATATCTAAGGTTG
1 CATATC-T-TCTAAGATTA
*
73383935 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
73383950 CATGTTTCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 12 0.43
18 2 0.07
19 14 0.50
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:73383930 original size:19 final size:20
Alignment explanation
Indices: 73383861--73383940 Score: 81
Period size: 22 Copynumber: 3.8 Consensus size: 20
73383851 AAATCAAATC
*
73383861 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
73383884 TCTAAGATTACATATCATATCT
1 TCTAAGATTACATATCATA--T
73383906 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
* *
73383925 TCTAAGGTTGCATATC
1 TCTAAGATTACATATC
73383941 TTCGAAGATC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
19 14 0.26
22 29 0.54
23 11 0.20
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:73389015 original size:22 final size:23
Alignment explanation
Indices: 73388988--73389032 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
73388978 GGGTATCTAC
73388988 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
73389010 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
73389033 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:73389036 original size:17 final size:17
Alignment explanation
Indices: 73389014--73389064 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
73389004 ATTACAAAAT
73389014 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
73389031 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
*
73389050 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
73389065 CATGTTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:73389037 original size:22 final size:22
Alignment explanation
Indices: 73388985--73389042 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
73388975 AAAGGGTATC
*
73388985 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
73389006 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
73389029 TACATATCATATCT
1 TACAAATCATATCT
73389043 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:73389045 original size:19 final size:20
Alignment explanation
Indices: 73388998--73389055 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
73388988 AAATCAAATC
*
73388998 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
73389021 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
73389040 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
73389056 TTCGAAGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:73390224 original size:15 final size:15
Alignment explanation
Indices: 73390204--73390234 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73390194 AGTACAGAAG
73390204 ATAGAGATAAGCTAA
1 ATAGAGATAAGCTAA
73390219 ATAGAGATAAGCTAA
1 ATAGAGATAAGCTAA
73390234 A
1 A
73390235 CCTTGAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.19, T:0.19
Consensus pattern (15 bp):
ATAGAGATAAGCTAA
Found at i:73391559 original size:7 final size:7
Alignment explanation
Indices: 73391537--73391576 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
73391527 TATAAAAATA
73391537 TAATATT
1 TAATATT
*
73391544 TTA-ATT
1 TAATATT
73391550 TAATATT
1 TAATATT
73391557 TAATATT
1 TAATATT
73391564 TAATATT
1 TAATATT
73391571 TAATAT
1 TAATAT
73391577 AATTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TAATATT
Found at i:73391573 original size:21 final size:20
Alignment explanation
Indices: 73391537--73391576 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
73391527 TATAAAAATA
*
73391537 TAATATTTTAATTTAATATT
1 TAATATTTAAATTTAATATT
73391557 TAATATTTAATATTTAATAT
1 TAATATTTAA-ATTTAATAT
73391577 AATTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TAATATTTAAATTTAATATT
Found at i:73399761 original size:40 final size:40
Alignment explanation
Indices: 73399698--73399906 Score: 152
Period size: 40 Copynumber: 4.9 Consensus size: 40
73399688 CACTAGTAAG
* * *
73399698 AAAACGCCGCTAAAGGTTAGAGCATTAGCGGCGCTTTTTGA
1 AAAATGCCGCTAAA-GATCGAGCATTAGCGGCGCTTTTTGA
*
73399739 AAAATGCCACTAAAGATCGAGCATTAGCGGCGC-TTTTGA
1 AAAATGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGA
* * *
73399778 GAAAATGCCGCAAAAGAGTTCAGCAAAACCACGGAATTAGTGGCGCTTTTT-A
1 -AAAATGCCGCTAAAGA--TC-G-------A--GCATTAGCGGCGCTTTTTGA
* * *
73399830 AAAAAGCCGCTAAAGATCGAGTATTAGCGGTGCTTTTTGA
1 AAAATGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGA
** * *
73399870 AAAACACCGTTAAAGATTGAGCATTAGCGGCGCTTTT
1 AAAATGCCGCTAAAGATCGAGCATTAGCGGCGCTTTT
73399907 CAGAAAACGC
Statistics
Matches: 134, Mismatches: 19, Indels: 31
0.73 0.10 0.17
Matches are distributed among these distances:
39 21 0.16
40 63 0.47
41 13 0.10
42 2 0.01
43 1 0.01
48 1 0.01
49 2 0.01
50 1 0.01
51 14 0.10
52 12 0.09
53 4 0.03
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (40 bp):
AAAATGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGA
Found at i:73399925 original size:40 final size:40
Alignment explanation
Indices: 73399841--73399925 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 40
73399831 AAAAGCCGCT
* * * * *
73399841 AAAGATCGAGTATTAGCGGTGCTTTTTGAAAAACACCGTT
1 AAAGATCGAGCATTAGCGGCGCTTTTAGAAAAACACCATA
* *
73399881 AAAGATTGAGCATTAGCGGCGCTTTTCAG-AAAACGCCATA
1 AAAGATCGAGCATTAGCGGCGCTTTT-AGAAAAACACCATA
73399921 AAAGA
1 AAAGA
73399926 ATTTTATTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (40 bp):
AAAGATCGAGCATTAGCGGCGCTTTTAGAAAAACACCATA
Found at i:73400069 original size:21 final size:21
Alignment explanation
Indices: 73400030--73400071 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73400020 TAGAGCTTTT
* *
73400030 GAGTTTAGGGTTTATGGTTTA
1 GAGTTTAGGATTTAGGGTTTA
*
73400051 GAGTTTAGGATTTGGGGTTTA
1 GAGTTTAGGATTTAGGGTTTA
73400072 TTGTTTTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (21 bp):
GAGTTTAGGATTTAGGGTTTA
Found at i:73400266 original size:21 final size:21
Alignment explanation
Indices: 73400237--73400288 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
73400227 GTAATATATA
*
73400237 TTTAGGGTTTAGGATGTA-AG
1 TTTATGGTTTAGGATGTAGAG
* *
73400257 TTTTATGGTTTATGATTTAGAG
1 -TTTATGGTTTAGGATGTAGAG
73400279 TTTATGGTTT
1 TTTATGGTTT
73400289 GAGTTTTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.21, C:0.00, G:0.27, T:0.52
Consensus pattern (21 bp):
TTTATGGTTTAGGATGTAGAG
Found at i:73400528 original size:26 final size:26
Alignment explanation
Indices: 73400499--73400579 Score: 87
Period size: 26 Copynumber: 3.2 Consensus size: 26
73400489 GTTCTTGTAA
73400499 ATTATTAACACAATTATTGATATAAC
1 ATTATTAACACAATTATTGATATAAC
** * * **
73400525 ATTATT-TTATATTTA-T-ATATTGC
1 ATTATTAACACAATTATTGATATAAC
73400548 ATTATTAACACAATTATTGATATAAC
1 ATTATTAACACAATTATTGATATAAC
73400574 ATTATT
1 ATTATT
73400580 TTATATTTAT
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
23 11 0.28
24 6 0.15
25 6 0.15
26 17 0.43
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.47
Consensus pattern (26 bp):
ATTATTAACACAATTATTGATATAAC
Found at i:73400571 original size:49 final size:49
Alignment explanation
Indices: 73400499--73400611 Score: 226
Period size: 49 Copynumber: 2.3 Consensus size: 49
73400489 GTTCTTGTAA
73400499 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
1 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
73400548 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
1 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
73400597 ATTATTAACACAATT
1 ATTATTAACACAATT
73400612 TGATTTTAGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.48
Consensus pattern (49 bp):
ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
Found at i:73401673 original size:43 final size:43
Alignment explanation
Indices: 73401625--73401706 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
73401615 GGAAAGCGCC
* *
73401625 GCTAAAGGCCATGAGTTTTAGCGGTGCTTTT-CCCACAAATGCT
1 GCTAAAGGCCATGACTTTTAGCGGCG-TTTTCCCCACAAATGCT
73401668 GCTAAAGGCCATGACTTTTAGCGGCGTTTTCCCCACAAA
1 GCTAAAGGCCATGACTTTTAGCGGCGTTTTCCCCACAAA
73401707 CACCGCTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 4 0.11
43 32 0.89
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (43 bp):
GCTAAAGGCCATGACTTTTAGCGGCGTTTTCCCCACAAATGCT
Found at i:73401715 original size:43 final size:43
Alignment explanation
Indices: 73401623--73401730 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
73401613 TAGGAAAGCG
* * **
73401623 CCGCTAAAGGCCATGAGTTTTAGCGGTGCTTTTCCCACAAATG
1 CCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTCCCACAAACA
*
73401666 CTGCTAAAGGCCATGACTTTTAGCGGCG-TTTTCCCCACAAACA
1 CCGCTAAAGGCCATGACTTTTAGCGGCGCTTTT-CCCACAAACA
* *
73401709 CCGCTAAAAGTCATGATCTTTT
1 CCGCTAAAGGCCATGA-CTTTT
73401731 GTGGAGTTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 4 0.07
43 46 0.84
44 5 0.09
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (43 bp):
CCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTCCCACAAACA
Found at i:73407191 original size:40 final size:39
Alignment explanation
Indices: 73407026--73407209 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
73407016 AAATTGAATG
* * *
73407026 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
73407066 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
73407106 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
73407146 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
73407185 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
73407210 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:73407234 original size:80 final size:81
Alignment explanation
Indices: 73407066--73407254 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
73407056 GCTGGAAATT
* * * *
73407066 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
73407131 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
73407147 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
73407210 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
73407226 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
73407255 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:73414472 original size:15 final size:16
Alignment explanation
Indices: 73414452--73414481 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73414442 AAGATCTTAT
73414452 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
73414467 AATCATAACCTTACT
1 AATCATAACCTTACT
73414482 GAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:73415901 original size:46 final size:46
Alignment explanation
Indices: 73415847--73415972 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 46
73415837 GTTGAGCACG
*
73415847 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG-TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGCAACAGGATC
* * *
73415893 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAAC-AGG-ATC
73415940 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
73415973 GGGCGAGTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 27 0.39
47 29 0.42
48 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAACAGGATC
Found at i:73422259 original size:39 final size:40
Alignment explanation
Indices: 73422187--73422314 Score: 188
Period size: 40 Copynumber: 3.2 Consensus size: 40
73422177 CTGCTCGTTC
* *
73422187 AAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAT
1 AAACGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCAT
73422227 AAACGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCAT
1 AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
* *
73422266 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACCCGCAT
1 AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
*
73422306 AAATGCCTT
1 AAACGCCTT
73422315 TGGATCCTAG
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
39 33 0.40
40 49 0.60
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
Found at i:73422370 original size:40 final size:40
Alignment explanation
Indices: 73422187--73422370 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
73422177 CTGCTCGTTC
* * *
73422187 AAACGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAT
1 AAACGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCAT
* * *
73422227 AAACGCC-TTCGGACTTAACCCGGATTTAGTAACTCGCAT
1 AAACGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCAT
* * * * *
73422266 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACCCGCAT
1 AAACGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCAT
* * * * * *
73422306 AAATGCCTTT-GGATCCTAGTCCGGATATAGTCACTTAGCAC
1 AAACGCCTTTGGGA-CTTAGCCCGGATATAGTAAC-TCGCAT
73422347 AAA-GCCTTTGGGACTTAGCCCGGA
1 AAACGCCTTTGGGACTTAGCCCGGA
73422371 CATCATTTGA
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
39 35 0.29
40 75 0.63
41 9 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AAACGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCAT
Found at i:73427203 original size:40 final size:40
Alignment explanation
Indices: 73427171--73427350 Score: 224
Period size: 40 Copynumber: 4.5 Consensus size: 40
73427161 TCGTTCAAAC
* *
73427171 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCATAAAT
73427211 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
73427251 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
** * * * *
73427291 GCCTTC-GGA-TCTAGTCCGGATATAGTCACTTAGCACAAA-
1 GCCTTCGGGACT-TAACCCGGATTTAGTAAC-TCGCATAAAT
*
73427330 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
73427351 CATCATTGAA
Statistics
Matches: 126, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 1 0.01
39 23 0.18
40 99 0.79
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
Found at i:73432196 original size:40 final size:39
Alignment explanation
Indices: 73432099--73432279 Score: 217
Period size: 39 Copynumber: 4.6 Consensus size: 39
73432089 CTACTCGTTC
*
73432099 AAAGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAT
1 AAAGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAT
*
73432138 AAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAT
1 AAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAT
*
73432177 AAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTCGCAT
1 AAA-GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAT
* * * * *
73432216 AAATGCCTTC-GGA-TCTAGTCCGGATATAGTCACTTAGCAC
1 AAA-GCCTTCGGGACT-TAGCCCGGATTTAGTAAC-TCGCAT
73432256 AAAGCCTTCGGGACTTAGCCCGGA
1 AAAGCCTTCGGGACTTAGCCCGGA
73432280 CATCATTTGA
Statistics
Matches: 126, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
37 1 0.01
38 10 0.08
39 73 0.58
40 41 0.33
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (39 bp):
AAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAT
Found at i:73440207 original size:40 final size:40
Alignment explanation
Indices: 73440137--73440302 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73440127 GAATCACGTA
* * * * *
73440137 CCTTCGGAATTTAA-CCGGATATAGCTACTCG-TTCAAACG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAT-AAACG
* *
73440176 CCTTCGGGACATAGCCCGG-TTATAGCAACTCGCATAAACG
1 CCTTCGGGACTTAACCCGGATT-TAGCAACTCGCATAAACG
* * *
73440216 CCTTTGGGACTTAACCCGGATTTAGTAACTCGCATAAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCATAAACG
* *
73440256 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCATAAACG
73440296 CCTTCGG
1 CCTTCGG
73440303 ATCCTAGTCC
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 11 0.10
40 96 0.87
41 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCATAAACG
Found at i:73440315 original size:40 final size:40
Alignment explanation
Indices: 73440175--73440355 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 40
73440165 TCGTTCAAAC
* * * *
73440175 GCCTTCGGGACATAGCCCGG-TTATAGCAACTCGCATAAAC
1 GCCTTCGGGACCTAACCCGGATT-TAGTAACTCGCATAAAT
* *
73440215 GCCTTTGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
1 GCCTTCGGGACCTAACCCGGATTTAGTAACTCGCATAAAT
*
73440255 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
1 GCCTTCGGGACCTAACCCGGATTTAGTAACTCGCATAAAT
** * * * *
73440295 GCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CCTAACCCGGATTTAGTAAC-TCGCATAAAT
* *
73440335 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACCTAACCCGGA
73440356 CATCATTTGA
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.02
40 107 0.88
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACCTAACCCGGATTTAGTAACTCGCATAAAT
Found at i:73440315 original size:80 final size:81
Alignment explanation
Indices: 73440170--73440355 Score: 209
Period size: 80 Copynumber: 2.3 Consensus size: 81
73440160 GCTACTCGTT
* * *
73440170 CAAACGCCTTCGGGACATAGCCCGG-TTATAGCAACTCGCATAAACGCCTTTGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATAGCAACTCGCATAAACGCCTTTCGGACCTAACCCG
* *
73440234 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* * * * **
73440250 TAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCATAAATGCC-TTCGGATCCTAGTCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATAGCAACTCGCATAAACGCCTTTCGGA-CCTAACCC
*
73440313 GGATATAGTCACTTAGCA
64 GGATATAGTAACTTAGCA
73440331 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
73440356 CATCATTTGA
Statistics
Matches: 88, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
79 5 0.06
80 74 0.84
81 9 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTATAGCAACTCGCATAAACGCCTTTCGGACCTAACCCGG
ATATAGTAACTTAGCA
Found at i:73444698 original size:46 final size:45
Alignment explanation
Indices: 73444648--73444820 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
73444638 TGGTTGAGCA
*
73444648 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AAACG
* * * *
73444694 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--A--CG
* *
73444741 TCCAAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGAGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA-AACG
* *
73444787 -CCTAAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
73444821 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
43 6 0.06
45 7 0.07
46 55 0.53
47 27 0.26
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAACG
Found at i:73444804 original size:93 final size:93
Alignment explanation
Indices: 73444645--73444815 Score: 258
Period size: 93 Copynumber: 1.8 Consensus size: 93
73444635 GGATGGTTGA
* *
73444645 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
73444710 TGAGT-TCGAGTTCGTGAGATGTAACTAG
66 TGAGTCT-GAGTTCGTGAGATGTAACTAG
* *
73444738 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATG-AGAACG-CCTAAGCTCGTTGA
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCA-AACGTCCGAA-CTCGTTGA
73444801 GTTGAGTCTGAGTTC
64 GTTGAGTCTGAGTTC
73444816 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
92 5 0.07
93 65 0.92
94 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:73446353 original size:42 final size:42
Alignment explanation
Indices: 73446299--73446404 Score: 158
Period size: 42 Copynumber: 2.5 Consensus size: 42
73446289 ATAGCCCAGC
* * *
73446299 TATGGTTTTACACAAAGTCTTATATCGATGCCATATCCTAGA
1 TATGGTCTTACACAAAGTCTTATATAGATGCCATATCCTAAA
* *
73446341 TATGGTCTTACACGAAGTCTCATATAGATGCCATATCCTAAA
1 TATGGTCTTACACAAAGTCTTATATAGATGCCATATCCTAAA
*
73446383 TATGGTCTTACACATAGTCTTA
1 TATGGTCTTACACAAAGTCTTA
73446405 GTAACCCTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (42 bp):
TATGGTCTTACACAAAGTCTTATATAGATGCCATATCCTAAA
Found at i:73448096 original size:82 final size:83
Alignment explanation
Indices: 73447957--73448123 Score: 230
Period size: 82 Copynumber: 2.0 Consensus size: 83
73447947 TTGAGATGGT
* * ** *
73447957 TAACATATTTTGTTTTTTTTTTTTGAAATGAATTATTGAAATGGTTGGTTAACATCTTACTGCTA
1 TAACATATTTTGTTTTGTGTTTTTGAAATGAATTATTGAAATGACTGGTTAACATCTTACTGCCA
73448022 TAGGATCATTTTGTTAGCA
66 TAGGATCATTTTGTTA-CA
* * *
73448041 TAACATATTTTG-TTTGTGTTTTT-AAATGATTTGTTGAAATGACTGGTTAACATCTTATTGCCA
1 TAACATATTTTGTTTTGTGTTTTTGAAATGAATTATTGAAATGACTGGTTAACATCTTACTGCCA
*
73448104 TATGATCATTTTGTTACA
66 TAGGATCATTTTGTTACA
73448122 TA
1 TA
73448124 TTTTATTTGT
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
81 4 0.05
82 49 0.66
83 9 0.12
84 12 0.16
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.49
Consensus pattern (83 bp):
TAACATATTTTGTTTTGTGTTTTTGAAATGAATTATTGAAATGACTGGTTAACATCTTACTGCCA
TAGGATCATTTTGTTACA
Found at i:73450308 original size:40 final size:40
Alignment explanation
Indices: 73450181--73450310 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73450171 ATGCTGGAAA
* *
73450181 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73450221 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73450261 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73450301 TTATATCCGG
1 TTATATCCGG
73450311 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73457412 original size:40 final size:40
Alignment explanation
Indices: 73457285--73457414 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73457275 ATGCTGGAAA
* *
73457285 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73457325 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73457365 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73457405 TTATATCCGG
1 TTATATCCGG
73457415 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73459061 original size:75 final size:75
Alignment explanation
Indices: 73458938--73459082 Score: 281
Period size: 75 Copynumber: 1.9 Consensus size: 75
73458928 GAAAAGAAAT
73458938 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
1 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
73459003 CGGCTATTTC
66 CGGCTATTTC
*
73459013 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATGAACCCCAAAATAAAT
1 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
73459078 CGGCT
66 CGGCT
73459083 GAATATGCTT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.46, C:0.23, G:0.05, T:0.27
Consensus pattern (75 bp):
TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
CGGCTATTTC
Found at i:73461156 original size:15 final size:16
Alignment explanation
Indices: 73461125--73461158 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
73461115 ATTATTAAAA
*
73461125 AAATTTAAAAAATTAT
1 AAATTGAAAAAATTAT
73461141 AAATTGAAAAAA-TAT
1 AAATTGAAAAAATTAT
73461156 AAA
1 AAA
73461159 AATATAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAATTGAAAAAATTAT
Found at i:73461164 original size:23 final size:23
Alignment explanation
Indices: 73461101--73461164 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
73461091 ATATATATAG
*
73461101 AAAATCATAAAAATAT-TATTAAA
1 AAAAT-ATAAAAATATAAATTAAA
* *
73461124 AAAATTTAAAAAATTATAAATTGAA
1 AAAATAT-AAAAA-TATAAATTAAA
73461149 AAAATATAAAAATATA
1 AAAATATAAAAATATA
73461165 GAATATTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 1 0.03
23 14 0.41
24 8 0.24
25 11 0.32
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
AAAATATAAAAATATAAATTAAA
Found at i:73461390 original size:9 final size:9
Alignment explanation
Indices: 73461374--73461430 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
73461364 AAGTTATTCA
73461374 AAAAATTAT
1 AAAAATTAT
* *
73461383 ATAAATTAG
1 AAAAATTAT
*
73461392 AAAAAATAT
1 AAAAATTAT
73461401 AAAAATTAT
1 AAAAATTAT
*
73461410 ATAAATT-T
1 AAAAATTAT
73461418 AAAAA-TAT
1 AAAAATTAT
73461426 AAAAA
1 AAAAA
73461431 AAATTTACAA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
7 1 0.03
8 11 0.28
9 27 0.69
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Done.