Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 237 of 438
Found at i:73461421 original size:25 final size:26
Alignment explanation
Indices: 73461374--73461430 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 26
73461364 AAGTTATTCA
73461374 AAAAATTATATAAATTAGAAAAAATAT
1 AAAAATTATATAAATTA-AAAAAATAT
*
73461401 AAAAATTATATAAATT-TAAAAATAT
1 AAAAATTATATAAATTAAAAAAATAT
73461426 AAAAA
1 AAAAA
73461431 AAATTTACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 13 0.45
27 16 0.55
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAAATTATATAAATTAAAAAAATAT
Found at i:73461445 original size:27 final size:25
Alignment explanation
Indices: 73461393--73461443 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
73461383 ATAAATTAGA
**
73461393 AAAAATATAAAAATTATATAAATTT
1 AAAAATATAAAAAAAATATAAATTT
*
73461418 AAAAATATAAAAAAAATTTACAATTT
1 AAAAATATAAAAAAAATATA-AATTT
73461444 TATATACAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
AAAAATATAAAAAAAATATAAATTT
Found at i:73461742 original size:29 final size:30
Alignment explanation
Indices: 73461710--73461785 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 30
73461700 ATTCTTAATT
*
73461710 TATTTTTATAATTTTTATT-CTTCTTA-TAA
1 TATTTTTATAATTTTTATTAATT-TTATTAA
* *
73461739 TATTTTT-TAAATTCTATTAATTTTATTAA
1 TATTTTTATAATTTTTATTAATTTTATTAA
*
73461768 TAATTTTATATATTTTTA
1 TATTTTTATA-ATTTTTA
73461786 AAAATAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
28 12 0.32
29 18 0.49
30 2 0.05
31 5 0.14
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (30 bp):
TATTTTTATAATTTTTATTAATTTTATTAA
Found at i:73461801 original size:56 final size:55
Alignment explanation
Indices: 73461740--73461867 Score: 136
Period size: 56 Copynumber: 2.3 Consensus size: 55
73461730 TTCTTATAAT
73461740 ATTTTTTAAATTCTATTA-ATTTTATTAATAATTTTATATATTTT-TAAA-AATAAATA
1 ATTTTTTAAATT-T-TTATATTTT-TTAATAA-TTTATATATTTTATAAATAATAAATA
** * *
73461796 ATTTTTTACAATTTTTATATTTTTTTGTAATTTATATTTTTTATAAATAATAAATT
1 ATTTTTTA-AATTTTTATATTTTTTAATAATTTATATATTTTATAAATAATAAATA
*
73461852 ATTATTTTTAATTTTT
1 ATT-TTTTAAATTTTT
73461868 TTGGAAATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
54 11 0.18
55 12 0.19
56 31 0.50
57 8 0.13
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.61
Consensus pattern (55 bp):
ATTTTTTAAATTTTTATATTTTTTAATAATTTATATATTTTATAAATAATAAATA
Found at i:73462192 original size:31 final size:32
Alignment explanation
Indices: 73462136--73462197 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
73462126 GGCCATTAAC
* *
73462136 TTTAATGGTCAAATGGCTTAATTGATAGTAAT
1 TTTAATGGTCAAAGGGCTCAATTGATAGTAAT
* *
73462168 TTTAATGTTC-AAGGGCTCAATTGATTGTAA
1 TTTAATGGTCAAAGGGCTCAATTGATAGTAA
73462198 AAGAAAGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (32 bp):
TTTAATGGTCAAAGGGCTCAATTGATAGTAAT
Found at i:73466948 original size:109 final size:109
Alignment explanation
Indices: 73466755--73466961 Score: 274
Period size: 109 Copynumber: 1.9 Consensus size: 109
73466745 AGTAGTAAAC
* * **
73466755 TCAACTTCACATGTCAGTGAATTCATCAAGCTCGTTTCAATAGGATGACCCAAATCCTGGAATAT
1 TCAACCTCACATGTCAGTGAATTCATCAAGCTCGTCTCAATAGGACCACCCAAATCCTGGAATAT
*
73466820 GAATTCATTAAAAGGGAGAACACAATCTTATGCATGTACATCAT
66 GAATTCATTAAAAGGGAGAACACAACCTTATGCATGTACATCAT
* *
73466864 TCAACCTCACATGTTAGTGAATTCATCAAG-TCCGTCTCAATAGGACCACCCAAAT-CTTGAGAT
1 TCAACCTCACATGTCAGTGAATTCATCAAGCT-CGTCTCAATAGGACCACCCAAATCCTGGA-AT
* * * * *
73466927 ATTAATTTATTAAGAGTGAGAACTCAACCTTATGC
64 ATGAATTCATTAAAAGGGAGAACACAACCTTATGC
73466962 TTATATCGTT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
108 5 0.06
109 79 0.94
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (109 bp):
TCAACCTCACATGTCAGTGAATTCATCAAGCTCGTCTCAATAGGACCACCCAAATCCTGGAATAT
GAATTCATTAAAAGGGAGAACACAACCTTATGCATGTACATCAT
Found at i:73475052 original size:25 final size:25
Alignment explanation
Indices: 73474965--73475056 Score: 78
Period size: 25 Copynumber: 3.7 Consensus size: 25
73474955 TCCTGTACAT
* * * *
73474965 GTATGCTCATATGAGCTGTGAATCA
1 GTATGCTCACACGAGCTGTAAATCG
* * *
73474990 GTATGCTCACTCGAGTTGTAGAGT-G
1 GTATGCTCACACGAGCTGTA-AATCG
* **
73475015 GTATGTTTTCACGAGCTGTAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
73475040 GTATGCTCACACGAGCT
1 GTATGCTCACACGAGCT
73475057 ATAGATCAGA
Statistics
Matches: 49, Mismatches: 16, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
24 2 0.04
25 45 0.92
26 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAAATCG
Found at i:73476050 original size:42 final size:42
Alignment explanation
Indices: 73476003--73476084 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
73475993 GCTGTGTGGC
* * *
73476003 CAAGCTGTTTGCCTCACACGACTGAGACACACGCTCGTGTTT
1 CAAGCTGTGTGCCTCACACGACTAAGACACACGCCCGTGTTT
* * *
73476045 CAAGCTGTGTGTCTCACACGGCTAAGTCACACGCCCGTGT
1 CAAGCTGTGTGCCTCACACGACTAAGACACACGCCCGTGT
73476085 CTTAGGCCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (42 bp):
CAAGCTGTGTGCCTCACACGACTAAGACACACGCCCGTGTTT
Found at i:73478076 original size:28 final size:27
Alignment explanation
Indices: 73477985--73478078 Score: 73
Period size: 28 Copynumber: 3.2 Consensus size: 27
73477975 AACTGGGCTT
* * *
73477985 TAGCCCATATCAATATTAATCTGGGCC
1 TAGCCCATATCAGTATCAATATGGGCC
*
73478012 ATAGCCCCT-TACAGTATCAGAGTATATTGGGCC
1 -TAGCCCATAT-CAGTATC--A--ATA-TGGGCC
73478045 TAGCCCATATCAGTATCAATATGGGCC
1 TAGCCCATATCAGTATCAATATGGGCC
73478072 GTAGCCC
1 -TAGCCC
73478079 TATTACAAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
27 7 0.13
28 21 0.40
30 2 0.04
32 16 0.30
33 7 0.13
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (27 bp):
TAGCCCATATCAGTATCAATATGGGCC
Found at i:73478098 original size:60 final size:59
Alignment explanation
Indices: 73477985--73478114 Score: 138
Period size: 60 Copynumber: 2.2 Consensus size: 59
73477975 AACTGGGCTT
* * * *
73477985 TAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAATATCAATATGGGCCATAGCCCATTACAG-ATCAGAGTATATTAGGCC
* *
73478045 TAGCCCATATCAGTATCAATATGGGCCGTAGCCCTATTACA-AGTC-GAGATATATTAGGCC
1 TAGCCCATATCAATATCAATATGGGCCATAGCCC-ATTACAGA-TCAGAG-TATATTAGGCC
* *
73478105 TTGGCCATAT
1 TAGCCCATAT
73478115 TAACACAGTT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
59 4 0.07
60 50 0.85
61 5 0.08
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (59 bp):
TAGCCCATATCAATATCAATATGGGCCATAGCCCATTACAGATCAGAGTATATTAGGCC
Found at i:73478161 original size:19 final size:20
Alignment explanation
Indices: 73478119--73478161 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
73478109 CCATATTAAC
** *
73478119 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
73478139 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
73478158 ACAG
1 ACAG
73478162 CCTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:73484562 original size:19 final size:19
Alignment explanation
Indices: 73484535--73484573 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
73484525 TAACTATGTG
73484535 TCCCCTGCACCTAAAATTT
1 TCCCCTGCACCTAAAATTT
*
73484554 TCCCTTGCACCTAAAATTT
1 TCCCCTGCACCTAAAATTT
73484573 T
1 T
73484574 AAGTTAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.33, G:0.05, T:0.36
Consensus pattern (19 bp):
TCCCCTGCACCTAAAATTT
Found at i:73485828 original size:24 final size:23
Alignment explanation
Indices: 73485784--73485828 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
73485774 TACATCAGCC
*
73485784 AAAGGTTCTTAGACTCGAAATGG
1 AAAGGTTCTTAAACTCGAAATGG
73485807 AAAGAGTTCTTGAAACTC-AAAT
1 AAAG-GTTCTT-AAACTCGAAAT
73485829 AAGGAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 10 0.53
25 5 0.26
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (23 bp):
AAAGGTTCTTAAACTCGAAATGG
Found at i:73493810 original size:29 final size:29
Alignment explanation
Indices: 73493776--73493907 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
73493766 TACTCGATTT
** * *
73493776 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
73493805 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
73493834 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
73493863 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73493892 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
73493908 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:73501154 original size:29 final size:29
Alignment explanation
Indices: 73501120--73501251 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
73501110 TACTCGATTT
** * *
73501120 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
73501149 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
73501178 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
73501207 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73501236 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
73501252 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:73513007 original size:20 final size:20
Alignment explanation
Indices: 73512982--73513021 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
73512972 ATTTTTGAAA
73512982 CTGGCATATATTAATCTCTC
1 CTGGCATATATTAATCTCTC
*
73513002 CTGGCATATCTTAATCTCTC
1 CTGGCATATATTAATCTCTC
73513022 TATTTGAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.40
Consensus pattern (20 bp):
CTGGCATATATTAATCTCTC
Found at i:73514279 original size:198 final size:198
Alignment explanation
Indices: 73513938--73514332 Score: 754
Period size: 198 Copynumber: 2.0 Consensus size: 198
73513928 GTTCCCTAAG
*
73513938 GGGTACCCTCGATAAGAATTGACAGATTAATGAATCGTACACCTCAAGTGTACTACTTGAGCCTT
1 GGGTACCCTCGATAAGAATTGACAAATTAATGAATCGTACACCTCAAGTGTACTACTTGAGCCTT
73514003 CATTAGAATTTCAATAATTCAATGGACATATAACTCTTGACTTGGCATGAAAATCTTGAGATAAA
66 CATTAGAATTTCAATAATTCAATGGACATATAACTCTTGACTTGGCATGAAAATCTTGAGATAAA
*
73514068 ATGATAATGACTTGAAAGAACATTGCTTGATGAGCACATCTATGTTACTTGATTTATATGAATAG
131 ATGATAATGACTTGAAAGAACATTGCTTGATGAGCACATCTATGTTACTTGATTTATATAAATAG
73514133 TTA
196 TTA
*
73514136 GGGTACCCTCGATAAGAATTGACAAATTAATGAATCGTACACCTCGAGTGTACTACTTGAGCCTT
1 GGGTACCCTCGATAAGAATTGACAAATTAATGAATCGTACACCTCAAGTGTACTACTTGAGCCTT
73514201 CATTAGAATTTCAATAATTCAATGGACATATAACTCTTGACTTGGCATGAAAATCTTGAGATAAA
66 CATTAGAATTTCAATAATTCAATGGACATATAACTCTTGACTTGGCATGAAAATCTTGAGATAAA
*
73514266 ATGATAGTGACTTGAAAGAACATTGCTTGATGAGCACATCTATGTTACTTGATTTATATAAATAG
131 ATGATAATGACTTGAAAGAACATTGCTTGATGAGCACATCTATGTTACTTGATTTATATAAATAG
73514331 TT
196 TT
73514333 GGTGACTAAC
Statistics
Matches: 193, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
198 193 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (198 bp):
GGGTACCCTCGATAAGAATTGACAAATTAATGAATCGTACACCTCAAGTGTACTACTTGAGCCTT
CATTAGAATTTCAATAATTCAATGGACATATAACTCTTGACTTGGCATGAAAATCTTGAGATAAA
ATGATAATGACTTGAAAGAACATTGCTTGATGAGCACATCTATGTTACTTGATTTATATAAATAG
TTA
Found at i:73515471 original size:12 final size:12
Alignment explanation
Indices: 73515454--73515480 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
73515444 GACTTGCATG
73515454 AATTAATTGAAA
1 AATTAATTGAAA
73515466 AATTAATTGAAA
1 AATTAATTGAAA
73515478 AAT
1 AAT
73515481 GTTCTGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (12 bp):
AATTAATTGAAA
Found at i:73518409 original size:39 final size:39
Alignment explanation
Indices: 73518355--73518433 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
73518345 TTAATACAAT
*
73518355 TTGCATTAAATCTCATGATCACCCCTTACTCATTCATAA
1 TTGCATTAAATCTCATGATCACCCCTCACTCATTCATAA
73518394 TTGCATTAAATCTCATGATCACCCCTCACTCATTCATAA
1 TTGCATTAAATCTCATGATCACCCCTCACTCATTCATAA
73518433 T
1 T
73518434 GCTTACTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.30, C:0.29, G:0.05, T:0.35
Consensus pattern (39 bp):
TTGCATTAAATCTCATGATCACCCCTCACTCATTCATAA
Found at i:73521853 original size:27 final size:26
Alignment explanation
Indices: 73521809--73521860 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73521799 CTCGCTGCAA
*
73521809 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
73521836 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
73521861 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:73524471 original size:48 final size:48
Alignment explanation
Indices: 73524400--73524593 Score: 361
Period size: 48 Copynumber: 4.0 Consensus size: 48
73524390 CAAGATAAAT
73524400 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73524448 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73524496 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
73524544 ATATGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73524592 AT
1 AT
73524594 GTGTGTATAT
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 143 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:73524784 original size:37 final size:37
Alignment explanation
Indices: 73524734--73524806 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
73524724 GGAAATATAT
73524734 TCCGGGTAAGACCC-AAAGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGAAA-ACTACGTGTGGAGATTTTG
* *
73524771 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTT
1 TCCGGGTAAGACCCGAAAACTACGTGTGGAGATTTT
73524807 ATCTGAGCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 31 0.94
38 2 0.06
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGAAAACTACGTGTGGAGATTTTG
Found at i:73529815 original size:40 final size:40
Alignment explanation
Indices: 73529770--73529899 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
73529760 CGGAATACAA
73529770 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
73529810 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73529850 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*
73529890 CCGAATATAA
1 CCGGATATAA
73529900 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73533798 original size:27 final size:27
Alignment explanation
Indices: 73533775--73533898 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
73533765 CAATTTACAG
73533775 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
73533802 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
73533829 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
73533856 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
73533883 AATTACTAAAATACCC
1 AATTACCAAAATACCC
73533899 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:73533833 original size:54 final size:54
Alignment explanation
Indices: 73533775--73533898 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
73533765 CAATTTACAG
* * *
73533775 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
* *
73533829 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
73533883 AATTACTAAAATACCC
1 AATTACTAAAATACCC
73533899 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
Found at i:73533867 original size:81 final size:81
Alignment explanation
Indices: 73533775--73533927 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
73533765 CAATTTACAG
* **
73533775 AATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTACTAA
1 AATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTACTAA
73533838 AATACCCTTTGTTTATAA
64 AATACCCTTTGTTTATAA
* * *
73533856 AATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTACTGAAA
1 AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
73533921 TACCCTT
66 TACCCTT
73533928 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:73533911 original size:27 final size:27
Alignment explanation
Indices: 73533881--73533942 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
73533871 CATGGTTTGA
73533881 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
73533908 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
73533935 AAAATTAC
1 AAAATTAC
73533943 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:73533911 original size:54 final size:54
Alignment explanation
Indices: 73533775--73533925 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
73533765 CAATTTACAG
* ** * * *
73533775 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
73533829 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
73533883 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
73533926 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:73534594 original size:28 final size:28
Alignment explanation
Indices: 73534561--73534657 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
73534551 GCGTAGATCA
73534561 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
73534589 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
73534617 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
73534645 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
73534658 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:73539106 original size:2 final size:2
Alignment explanation
Indices: 73539099--73539126 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
73539089 GCTTCGCCAC
73539099 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73539127 CTGTTCTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73539175 original size:27 final size:26
Alignment explanation
Indices: 73539123--73539182 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
73539113 ATATATATAT
*
73539123 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
73539149 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
73539176 ATATCTG
1 ATATCTG
73539183 GCAGCCTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:73540610 original size:40 final size:39
Alignment explanation
Indices: 73540565--73540772 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
73540555 CGGAATACAA
*
73540565 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73540605 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73540645 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * * *
73540685 CCGGATGTAGTCGCTAGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
73540725 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73540765 CCGGATAT
1 CCGGATAT
73540773 CATTCAATTG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73540705 original size:80 final size:81
Alignment explanation
Indices: 73540565--73540770 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
73540555 CGGAATACAA
* * *
73540565 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
73540629 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
73540645 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TCG-CTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
* *
73540708 TGCCTTTGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
73540725 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
73540771 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 102 0.95
81 2 0.02
82 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:73548722 original size:40 final size:40
Alignment explanation
Indices: 73548677--73548844 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
73548667 CGGAATATAA
73548677 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
73548717 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
73548757 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73548797 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
73548837 CCGGATAT
1 CCGGATAT
73548845 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73555132 original size:46 final size:44
Alignment explanation
Indices: 73555081--73555257 Score: 203
Period size: 46 Copynumber: 3.9 Consensus size: 44
73555071 GATGGTTGGC
73555081 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
73555125 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
73555174 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* *
73555219 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73555258 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 70 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:73555237 original size:93 final size:93
Alignment explanation
Indices: 73555078--73555249 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
73555068 TAGGATGGTT
***
73555078 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
73555143 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
73555171 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
73555236 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
73555250 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:73558224 original size:14 final size:15
Alignment explanation
Indices: 73558175--73558224 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
73558165 GTATCTTTGG
*
73558175 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
73558190 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
73558205 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
73558219 TTTCTT
1 TTTCTT
73558225 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:73560656 original size:46 final size:44
Alignment explanation
Indices: 73560605--73560780 Score: 176
Period size: 46 Copynumber: 3.9 Consensus size: 44
73560595 ATGGTTGAGC
73560605 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
73560649 ATGTCCGAACTCGTTGAGTTGAGT-CGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* * *
73560697 ATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
73560741 ACACTCGACCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 A-TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73560781 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 9 0.08
46 82 0.77
47 7 0.07
48 3 0.03
49 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:73560760 original size:92 final size:93
Alignment explanation
Indices: 73560603--73560772 Score: 263
Period size: 92 Copynumber: 1.8 Consensus size: 93
73560593 GGATGGTTGA
* **
73560603 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAACTCCGAACTCGTTGAGT
73560668 TGAGT-CGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
73560695 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACACT-CGACCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-ACTCCGAACTCGTTGAG
73560759 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
73560773 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
92 62 0.89
93 8 0.11
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAACTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:73562162 original size:20 final size:21
Alignment explanation
Indices: 73562128--73562166 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
73562118 TTTCCAGCAC
73562128 ATTTTTACATAAAATTTTAGA
1 ATTTTTACATAAAATTTTAGA
*
73562149 ATTTTT-CATCAAATTTTA
1 ATTTTTACATAAAATTTTA
73562167 CAAGTTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (21 bp):
ATTTTTACATAAAATTTTAGA
Found at i:73578524 original size:26 final size:26
Alignment explanation
Indices: 73578467--73578529 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
73578457 TTTTACTGAA
*
73578467 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCT-AGTATGAAAATGACCATT
* *
73578494 TTACCCCTAG-ATGCAAAATGACCGTT
1 ATACCCCTAGTATG-AAAATGACCATT
73578520 ATACCCCTAG
1 ATACCCCTAG
73578530 GGTTAATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 21 0.68
27 7 0.23
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (26 bp):
ATACCCCTAGTATGAAAATGACCATT
Found at i:73578815 original size:19 final size:20
Alignment explanation
Indices: 73578793--73578837 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
73578783 CTGTTTTATT
73578793 ATGGGCC-AACTGTATTAAA
1 ATGGGCCTAACTGTATTAAA
* *
73578812 ATGGGCCTAACTGTGTTAAT
1 ATGGGCCTAACTGTATTAAA
73578832 ATGGGC
1 ATGGGC
73578838 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (20 bp):
ATGGGCCTAACTGTATTAAA
Found at i:73578967 original size:28 final size:28
Alignment explanation
Indices: 73578866--73578972 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 28
73578856 ACTTGTAATA
* * *
73578866 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
73578894 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
73578926 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
73578955 GGGCTAAGGCCCAG-TTAA
1 GGGCTAAGGCCCAGATTAA
73578973 CTCTGATTTC
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
27 11 0.17
28 19 0.30
29 8 0.13
30 2 0.03
31 1 0.02
32 9 0.14
33 6 0.10
34 7 0.11
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:73578993 original size:62 final size:61
Alignment explanation
Indices: 73578858--73579002 Score: 188
Period size: 61 Copynumber: 2.4 Consensus size: 61
73578848 ATATCTTGAC
* * *
73578858 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACTCTGATA
*
73578919 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACTCTGAT-
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACTCTGATA
*
73578980 TTCTGAATAGGGCT-TAGGCCCAG
1 TTGT-AATAGGGCTAT-GGCCCAG
73579003 TAAAGCTTGA
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
61 43 0.57
62 32 0.43
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (61 bp):
TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACTCTGATA
Found at i:73584707 original size:47 final size:47
Alignment explanation
Indices: 73584655--73584904 Score: 410
Period size: 47 Copynumber: 5.3 Consensus size: 47
73584645 ACAAGATATG
*
73584655 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
73584702 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
73584749 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATA--TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
73584798 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
73584845 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
73584892 TAAATGTGATAAG
1 TATATGTGATAAG
73584905 TCCCGAAGGG
Statistics
Matches: 188, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 143 0.76
49 45 0.24
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:73584767 original size:96 final size:94
Alignment explanation
Indices: 73584655--73584904 Score: 410
Period size: 96 Copynumber: 2.6 Consensus size: 94
73584645 ACAAGATATG
* *
73584655 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCGA
*
73584720 GTGGCCAACGTGATGAATGTGAAAGTGTA
66 ATGGCCAACGTGATGAATGTGAAAGTGTA
*
73584749 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACC
1 TATA--TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGACC
* *
73584814 TAATGGCCAATGTGATGAATGTGAAAGTGTA
64 GAATGGCCAACGTGATGAATGTGAAAGTGTA
* *
73584845 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73584905 TCCCGAAGGG
Statistics
Matches: 145, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
94 57 0.39
96 88 0.61
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCGA
ATGGCCAACGTGATGAATGTGAAAGTGTA
Found at i:73586037 original size:27 final size:27
Alignment explanation
Indices: 73586007--73586063 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
73585997 AGCCATTGGA
73586007 ATGGTTATTCATGATCATTTTGGTGCT
1 ATGGTTATTCATGATCATTTTGGTGCT
73586034 ATGGTTATTCATGATCATTTTGGTGCT
1 ATGGTTATTCATGATCATTTTGGTGCT
73586061 ATG
1 ATG
73586064 TATGACAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.11, G:0.23, T:0.47
Consensus pattern (27 bp):
ATGGTTATTCATGATCATTTTGGTGCT
Found at i:73587654 original size:17 final size:17
Alignment explanation
Indices: 73587632--73587664 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
73587622 GTAGGTTTTC
73587632 AAAATGGAAATGGAAAT
1 AAAATGGAAATGGAAAT
73587649 AAAATGGAAATGGAAA
1 AAAATGGAAATGGAAA
73587665 CTAGCAATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (17 bp):
AAAATGGAAATGGAAAT
Found at i:73587838 original size:25 final size:26
Alignment explanation
Indices: 73587804--73587864 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
73587794 ACATATTTTC
*
73587804 TCAAAATTTTACAGGA-GTAAAATCA
1 TCAAAATTTTACAAGAGGTAAAATCA
* *
73587829 TCAAAATTTTACAATAGGTAAAATCG
1 TCAAAATTTTACAAGAGGTAAAATCA
*
73587855 TCAAATTTTT
1 TCAAAATTTT
73587865 GTTGGGGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 14 0.45
26 17 0.55
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACAAGAGGTAAAATCA
Found at i:73591184 original size:19 final size:19
Alignment explanation
Indices: 73591160--73591199 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73591150 TATGTCATCA
*
73591160 TAAATTCATAGGCATAACT
1 TAAATTCATAAGCATAACT
* *
73591179 TAAATTTATAAGCATGACT
1 TAAATTCATAAGCATAACT
73591198 TA
1 TA
73591200 TACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAAGCATAACT
Found at i:73593805 original size:48 final size:48
Alignment explanation
Indices: 73593734--73594063 Score: 322
Period size: 48 Copynumber: 6.9 Consensus size: 48
73593724 TAAATTGCCA
* * * * *
73593734 ATGCCATGTCCGAGACATGGTCTTACACTGGCT-TACATGTCGAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCAAGGCCG
* * *
73593782 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * * *
73593830 ATGCCATGTTCCAAACATGGTCTTACACTAACTCTCATATTATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * **
73593878 ACGCCATGTCCCAGACATGGTCTTACACTAGCGCGCATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * **
73593926 ATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * * **
73593974 ATGTCATGTTCCAGACATAGTCTTACACTGGCTCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCAAGGCCG
* * * * *
73594022 ATGCCATGTTCCAAATATGGTCTTACACTAGCACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
73594064 CTCAAATGTC
Statistics
Matches: 230, Mismatches: 49, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
47 2 0.01
48 225 0.98
49 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGGCCG
Found at i:73593997 original size:144 final size:144
Alignment explanation
Indices: 73593780--73594063 Score: 388
Period size: 144 Copynumber: 2.0 Consensus size: 144
73593770 ATGTCGAGGT
* * * * *
73593780 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTTCCAAA
* * *
73593845 CATGGTCTTACACTAACTCTCATATTATGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGC
66 CATAGTCTTACACTAACTCTCATAATATGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGC
* *
73593910 GCGCATATCAACAC
131 ACACATATCAACAC
** * *
73593924 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGTTGATGTCATGTTCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTTCCAAA
** * * * *
73593989 CATAGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTTCCAAATATGGTCTTACACTAGC
66 CATAGTCTTACACTAACTCTCATAATATGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGC
73594054 ACACATATCA
131 ACACATATCA
73594064 CTCAAATGTC
Statistics
Matches: 120, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
144 120 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (144 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTTCCAAA
CATAGTCTTACACTAACTCTCATAATATGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGC
ACACATATCAACAC
Found at i:73596491 original size:21 final size:22
Alignment explanation
Indices: 73596461--73596502 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
73596451 TAGTAAAAGT
73596461 CATTTCTCTAACCA-TAAACATG
1 CATTTCTCT-ACCATTAAACATG
73596483 CATTT-TCTACCATTAAACAT
1 CATTTCTCTACCATTAAACAT
73596503 CAGAATACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (22 bp):
CATTTCTCTACCATTAAACATG
Found at i:73600342 original size:3 final size:3
Alignment explanation
Indices: 73600330--73600365 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
73600320 ATATAACCAT
*
73600330 TTC TTC -TC TTC TTC TTC TTC TTC TTC TTT TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
73600366 ACTGCCCAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:73601849 original size:29 final size:30
Alignment explanation
Indices: 73601774--73601875 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 30
73601764 TTGGGTACCG
*
73601774 ATTATAATTTATAAATTTTAAATTAATAATAGTAAA
1 ATTATAA-TT-TAACTTTTAAA--AATAATA--AAA
*
73601810 ATTAT-ATTTTACTTCTTAAAAATAATAAAA
1 ATTATAATTTAACTT-TTAAAAATAATAAAA
*
73601840 ATT-TAATTTAAACTTTTAAAAATTATAAAA
1 ATTATAATTT-AACTTTTAAAAATAATAAAA
73601870 A-TATAA
1 ATTATAA
73601876 ACTATTAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
29 2 0.03
30 28 0.48
31 4 0.07
32 7 0.12
33 4 0.07
34 7 0.12
35 1 0.02
36 5 0.09
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (30 bp):
ATTATAATTTAACTTTTAAAAATAATAAAA
Found at i:73603428 original size:3 final size:3
Alignment explanation
Indices: 73603420--73603451 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
73603410 TTTTATTCAT
73603420 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
73603452 TGTTTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:73614611 original size:40 final size:40
Alignment explanation
Indices: 73614556--73614772 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
73614546 CGGATGATAA
* *
73614556 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
73614596 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
73614635 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
73614675 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73614715 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
73614755 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73614773 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 53 0.32
40 112 0.67
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73614687 original size:79 final size:80
Alignment explanation
Indices: 73614556--73614772 Score: 309
Period size: 79 Copynumber: 2.7 Consensus size: 80
73614546 CGGATGATAA
* *
73614556 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCA-TT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTT
**
73614619 GTGCGAGTTACTA-ATT
65 GTGCGAACTACTATA-T
73614635 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
73614700 TGCGAACTACTATAT
66 TGCGAACTACTATAT
* * *
73614715 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
73614773 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
79 73 0.57
80 53 0.42
81 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAACTACTATAT
Found at i:73614768 original size:119 final size:119
Alignment explanation
Indices: 73614556--73614772 Score: 309
Period size: 119 Copynumber: 1.8 Consensus size: 119
73614546 CGGATGATAA
* * *
73614556 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTGA
*
73614621 GCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 GCGAGTTACTAATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
73614675 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AACTGACTAAT-TCCGGGCTAAGTCCCGAAGGCA-T
*
73614738 TGAGCGAG-TAGCT-ATATCC-GGTTAAATCCCGAAGG
63 TGAGCGAGTTA-CTAAT-TCCGGGCTAAATCCCGAAGG
73614773 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
118 2 0.02
119 71 0.81
120 15 0.17
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTGA
GCGAGTTACTAATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73622697 original size:40 final size:40
Alignment explanation
Indices: 73622576--73622791 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
73622566 CGGATGATAA
* *
73622576 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
73622616 CCGGGCTAAGT-CCGAAGGCA-TTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
73622654 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
73622694 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73622734 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
73622774 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73622792 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 27 0.17
39 34 0.21
40 101 0.62
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73628738 original size:12 final size:12
Alignment explanation
Indices: 73628721--73628775 Score: 67
Period size: 12 Copynumber: 4.6 Consensus size: 12
73628711 TCTCTCAAAA
73628721 TCTTTTTCATTC
1 TCTTTTTCATTC
73628733 TCTTTTTCAATT-
1 TCTTTTTC-ATTC
*
73628745 TCTTTTTCAATC
1 TCTTTTTCATTC
* *
73628757 TCATTTTCACTC
1 TCTTTTTCATTC
73628769 TCTTTTT
1 TCTTTTT
73628776 GTTCTTTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
11 2 0.05
12 32 0.86
13 3 0.08
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (12 bp):
TCTTTTTCATTC
Found at i:73628747 original size:36 final size:36
Alignment explanation
Indices: 73628707--73628775 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
73628697 TCAACTTCTT
* *
73628707 TTTCTCTCTCAAAATCTTTTTCATTCTCTTTTTCAA
1 TTTCTCTCTCAAAATCATTTTCACTCTCTTTTTCAA
* * **
73628743 TTTCTTTTTCAATCTCATTTTCACTCTCTTTTT
1 TTTCTCTCTCAAAATCATTTTCACTCTCTTTTT
73628776 GTTCTTTTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.16, C:0.25, G:0.00, T:0.59
Consensus pattern (36 bp):
TTTCTCTCTCAAAATCATTTTCACTCTCTTTTTCAA
Found at i:73628748 original size:24 final size:24
Alignment explanation
Indices: 73628721--73628775 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
73628711 TCTCTCAAAA
* * *
73628721 TCTTTTTCATTCTCTTTTTCAATT
1 TCTTTTTCAATCTCATTTTCAATC
*
73628745 TCTTTTTCAATCTCATTTTCACTC
1 TCTTTTTCAATCTCATTTTCAATC
73628769 TCTTTTT
1 TCTTTTT
73628776 GTTCTTTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (24 bp):
TCTTTTTCAATCTCATTTTCAATC
Found at i:73629829 original size:11 final size:10
Alignment explanation
Indices: 73629803--73629828 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
73629793 TTTAACACAA
73629803 TTTTTTGAAT
1 TTTTTTGAAT
73629813 TTTTTTGAAT
1 TTTTTTGAAT
73629823 TTTTTT
1 TTTTTT
73629829 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (10 bp):
TTTTTTGAAT
Found at i:73632279 original size:20 final size:21
Alignment explanation
Indices: 73632254--73632293 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
73632244 CCTTAAAAAC
*
73632254 AGGGC-ACACGCTCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
73632274 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
73632294 CCATTAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:73650171 original size:27 final size:27
Alignment explanation
Indices: 73650149--73650451 Score: 408
Period size: 27 Copynumber: 11.2 Consensus size: 27
73650139 TAATTTGTAA
* *
73650149 AATTATCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
73650176 AATTACTGTTTTATCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
73650203 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
73650230 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
73650257 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTATAG
*
73650284 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
73650311 AATTATCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
**
73650338 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
73650365 AATTACCATTTTACCCTCGATTTATAA
1 AATTACCGTTTTACCCTCGATTTATAG
* *
73650392 AATTTCTGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* * * * *
73650419 AATTATCGTTTTACGCTTGATTTAAAA
1 AATTACCGTTTTACCCTCGATTTATAG
73650446 AATTAC
1 AATTAC
73650452 TAAAATACCC
Statistics
Matches: 242, Mismatches: 34, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 242 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTATAG
Found at i:73650464 original size:27 final size:27
Alignment explanation
Indices: 73650434--73650603 Score: 175
Period size: 27 Copynumber: 6.3 Consensus size: 27
73650424 TCGTTTTACG
* *
73650434 CTTGATTTAAAAAATTACTAAAATACC
1 CTTGATTTATAAAATTACCAAAATACC
* *
73650461 CTTGGTTTACAAAATTACCAAAATACC
1 CTTGATTTATAAAATTACCAAAATACC
* *
73650488 CTCGA-TCAGTAAAATTACCAAAATACC
1 CTTGATTTA-TAAAATTACCAAAATACC
* *
73650515 CCT-AGTTTATAAAATTACTAAAATACC
1 CTTGA-TTTATAAAATTACCAAAATACC
*
73650542 CTTGGTTTATAAAATTACCAAAATACC
1 CTTGATTTATAAAATTACCAAAATACC
* * *
73650569 CCT-AGCTTGTAAAATTACCAAAATACC
1 CTTGA-TTTATAAAATTACCAAAATACC
*
73650596 CCTGATTT
1 CTTGATTT
73650604 GTGAAATTTT
Statistics
Matches: 118, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.03
27 112 0.95
28 3 0.03
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
CTTGATTTATAAAATTACCAAAATACC
Found at i:73650502 original size:54 final size:54
Alignment explanation
Indices: 73650444--73650596 Score: 200
Period size: 54 Copynumber: 2.8 Consensus size: 54
73650434 CTTGATTTAA
* * * *
73650444 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-TCGATCAGT
1 AAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCTTCGATCA-T
* * * *
73650498 AAAATTACCAAAATACCCCTAGTTTATAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCTTCGATCAT
* *
73650552 AAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCC
1 AAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCC
73650597 CTGATTTGTG
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 83 0.95
55 4 0.05
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.28
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCTTCGATCAT
Found at i:73650605 original size:27 final size:27
Alignment explanation
Indices: 73650444--73650705 Score: 162
Period size: 27 Copynumber: 9.8 Consensus size: 27
73650434 CTTGATTTAA
* * * **
73650444 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
**
73650471 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
73650498 AAAATTACCAAAATACCCCT-AGTTTAT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* * * *
73650525 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
*
73650552 AAAATTACCAAAATACCCCT-AGCTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
73650579 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *** **
73650606 GAAATT-TTGAAATA-TTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * **
73650632 AAAA-TATCGAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
* **
73650658 AGAATTACCAAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
* *
73650685 AGAATTACCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
73650706 TAGGGTAGAA
Statistics
Matches: 189, Mismatches: 35, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
25 4 0.02
26 32 0.17
27 148 0.78
28 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:73650611 original size:81 final size:81
Alignment explanation
Indices: 73650439--73650598 Score: 259
Period size: 81 Copynumber: 2.0 Consensus size: 81
73650429 TTACGCTTGA
* *
73650439 TTTAAAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATT
1 TTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTAGATCAGTAAAATT
73650504 ACCAAAATACCCCTAG
66 ACCAAAATACCCCTAG
* * *
73650520 TTTATAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGCT-TGTAAAAT
1 TTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTAGATCAGTAAAAT
73650584 TACCAAAATACCCCT
65 TACCAAAATACCCCT
73650599 GATTTGTGAA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
81 67 0.92
82 6 0.08
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (81 bp):
TTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTAGATCAGTAAAATT
ACCAAAATACCCCTAG
Found at i:73650706 original size:27 final size:27
Alignment explanation
Indices: 73650639--73650881 Score: 335
Period size: 27 Copynumber: 9.0 Consensus size: 27
73650629 TGTAAAATAT
73650639 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
73650666 CAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
73650693 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
73650720 CGAAATAACCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
73650747 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
73650774 TAAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
73650801 CGAAATACCCATATAGGGT-GAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
73650827 CGAAATACCCCTATAGGGTTGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
73650854 TGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
73650881 C
1 C
73650882 ATTTTGCCCC
Statistics
Matches: 190, Mismatches: 25, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 23 0.12
27 167 0.88
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:73651122 original size:25 final size:25
Alignment explanation
Indices: 73651084--73651178 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
73651074 AGGAAGTGCT
*
73651084 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
73651109 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
73651134 AAAAGGGCTTTACCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
73651159 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
73651179 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:73651191 original size:24 final size:24
Alignment explanation
Indices: 73651084--73651214 Score: 120
Period size: 25 Copynumber: 5.2 Consensus size: 24
73651074 AGGAAGTGCT
* *
73651084 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
*
73651109 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
* *
73651134 AAAAGGGCTTTACCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAT-G
*
73651159 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATG
**
73651182 AAAAGAGGCTAGGCCTCCAGTTATATG
1 AAAAG-GGCTTTGCC-CCAGTT-TATG
73651209 ATAAAG
1 A-AAAG
73651215 CAGCTATGCT
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.05
24 11 0.12
25 66 0.73
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATG
Found at i:73651202 original size:50 final size:50
Alignment explanation
Indices: 73651082--73651203 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 50
73651072 GGAGGAAGTG
*
73651082 CTAAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
* * * *
73651132 CGAAAAGGGCTTTACCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
* *
73651180 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTATGCC-CCAGTT
73651204 ATATGATAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 5 0.08
49 9 0.15
50 46 0.77
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (50 bp):
CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:73655350 original size:28 final size:28
Alignment explanation
Indices: 73655319--73655391 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 28
73655309 CCACCACCAG
*
73655319 TACATAGTACCTGGAAATATATCACCGA
1 TACATAGTACCTGGAAATATAACACCGA
* * * * * * *
73655347 TACAGAGTGCTTGGAATTGTAACATCGG
1 TACATAGTACCTGGAAATATAACACCGA
*
73655375 TACATAATACCTGGAAA
1 TACATAGTACCTGGAAA
73655392 CTGTAATAAT
Statistics
Matches: 32, Mismatches: 13, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (28 bp):
TACATAGTACCTGGAAATATAACACCGA
Found at i:73658568 original size:48 final size:48
Alignment explanation
Indices: 73658490--73658582 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
73658480 GTTATGTGTG
*
73658490 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGATATTTC
1 ATCCCATGTAAGACCATATCTGGGACATGGCATTGACATCGATATTTC
* * * *
73658538 ATCCCATGTAAGACCATATCTGTGATATGGCATTGGCATTGATAT
1 ATCCCATGTAAGACCATATCTGGGACATGGCATTGACATCGATAT
73658583 GAGACATCGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (48 bp):
ATCCCATGTAAGACCATATCTGGGACATGGCATTGACATCGATATTTC
Found at i:73661529 original size:53 final size:54
Alignment explanation
Indices: 73661472--73661679 Score: 206
Period size: 53 Copynumber: 3.9 Consensus size: 54
73661462 TTTCCTTTTT
* * * * * *
73661472 GAACTTACCATTGCCATGTCTTTACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGTCCTGACATGGTCTTACATGATATCCTTGCCTTATA
* * **
73661525 GAACTCACCAATGCCATGCCCTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGTCCTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * * *
73661579 GTGACTCATCAATGCCATGTCTTGACATTGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCCTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
73661634 GAACTTATCAATGCCATG-CCTTAGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGTCCTGA-CATGGTCTTACATGATATCCTT
73661680 ATCTTACCAA
Statistics
Matches: 127, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 36 0.28
55 42 0.33
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCCTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:73661612 original size:55 final size:53
Alignment explanation
Indices: 73661483--73661671 Score: 202
Period size: 55 Copynumber: 3.5 Consensus size: 53
73661473 AACTTACCAT
* * * *
73661483 TGCCATGTCTTTACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * * *
73661536 TGCCATGCCCTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTGACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * *
73661591 TGCCATGTCTTGACATTGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
73661645 TGCCATGCCTT-AGCATGGTCTTACATG
1 TGCCATGCCTTGA-CATGGTCTTACATG
73661672 ATATCCTTAT
Statistics
Matches: 112, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 32 0.29
55 42 0.38
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:73662537 original size:30 final size:31
Alignment explanation
Indices: 73662492--73662549 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
73662482 CTAACTCAAA
73662492 CTTTAGCAAAATTACAATTTTGCCCCTAAAC
1 CTTTAGCAAAATTACAATTTTGCCCCTAAAC
*
73662523 CTTT-GCAGAATTACAATTTTGCCCCTA
1 CTTTAGCAAAATTACAATTTTGCCCCTA
73662550 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (31 bp):
CTTTAGCAAAATTACAATTTTGCCCCTAAAC
Found at i:73667748 original size:43 final size:42
Alignment explanation
Indices: 73667700--73667806 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
73667690 ATATCCCTGA
73667700 TATGGTCTTACAAGTAATCTCATATCGATGCCAATAGCCCAGT
1 TATGGTCTTACAAGTAATCTCATATCGATG-CAATAGCCCAGT
* * *
73667743 TATGGTCTTATACAA--AGTCTCATATCGATGCGATATCCCAGT
1 TATGGTC-T-TACAAGTAATCTCATATCGATGCAATAGCCCAGT
*
73667785 TATGGTCTTACACGTAATCTCA
1 TATGGTCTTACAAGTAATCTCA
73667807 GTAACCCTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
40 4 0.07
41 1 0.02
42 23 0.42
43 21 0.38
44 1 0.02
45 5 0.09
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (42 bp):
TATGGTCTTACAAGTAATCTCATATCGATGCAATAGCCCAGT
Found at i:73667806 original size:42 final size:42
Alignment explanation
Indices: 73667685--73667806 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
73667675 TACCATACCA
* * * *
73667685 ATGCCATATCCCTGATATGGTCTTACAAGTAATCTCATATCG
1 ATGCAATATCCCAGTTATGGTCTTACACGTAATCTCATATCG
* * *
73667727 ATGCCAATAGCCCAGTTATGGTCTTATAC-AAAGTCTCATATCG
1 ATG-CAATATCCCAGTTATGGTCTTACACGTAA-TCTCATATCG
*
73667770 ATGCGATATCCCAGTTATGGTCTTACACGTAATCTCA
1 ATGCAATATCCCAGTTATGGTCTTACACGTAATCTCA
73667807 GTAACCCTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCAATATCCCAGTTATGGTCTTACACGTAATCTCATATCG
Found at i:73670401 original size:25 final size:25
Alignment explanation
Indices: 73670367--73670417 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
73670357 AAAGGTATAG
73670367 TATGCATGGTTTGTATGGAATACTA
1 TATGCATGGTTTGTATGGAATACTA
*
73670392 TATGCCTGGTTTGTATGGAATACTA
1 TATGCATGGTTTGTATGGAATACTA
73670417 T
1 T
73670418 CTTAGATTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.10, G:0.24, T:0.41
Consensus pattern (25 bp):
TATGCATGGTTTGTATGGAATACTA
Found at i:73685487 original size:51 final size:51
Alignment explanation
Indices: 73685402--73685541 Score: 140
Period size: 51 Copynumber: 2.7 Consensus size: 51
73685392 CGGATGCCCG
* * * * * *
73685402 GTGGCCTGCGCATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CATAAT
1 GTGGCCTGCACATAGTACCACACTTGTGA-CCAAAGCTACATT-TTACACAAA
* *
73685453 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATATTTTACACAAA
1 GTGGCCTGCACATAGTACCACACTTGTGACCAAAGCTACATTTTACACAAA
** * *
73685504 GTGGCCTGCAGTTAGTACCACACGTGTGACCGAAGCTA
1 GTGGCCTGCACATAGTACCACACTTGTGACCAAAGCTA
73685542 TCGGGTATGC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
50 2 0.03
51 71 0.96
52 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGACCAAAGCTACATTTTACACAAA
Found at i:73685667 original size:52 final size:50
Alignment explanation
Indices: 73685551--73685680 Score: 143
Period size: 52 Copynumber: 2.6 Consensus size: 50
73685541 ATCGGGTATG
* **
73685551 CATAGTAGCCTGCACTTAGTACTACACATACGACCTAACCATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCTAACCATCTGAAACA
* * ** * *
73685601 CGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCT--AACCATCTGAAACA
* *
73685653 CATAGTAGCCTGCACATAGTTCTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
73685681 TGTGTTCTCA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 31 0.48
52 34 0.52
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACACGACCTAACCATCTGAAACA
Found at i:73689015 original size:29 final size:29
Alignment explanation
Indices: 73688981--73689112 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
73688971 TACTCGATTT
** * *
73688981 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
73689010 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
73689039 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
73689068 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73689097 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
73689113 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:73692094 original size:130 final size:130
Alignment explanation
Indices: 73691921--73692194 Score: 539
Period size: 130 Copynumber: 2.1 Consensus size: 130
73691911 AAGTATGACT
73691921 AAGTATAATCGGCCATATGAGTGCTTGATGCTATATTATAAGTATTGAGCCACAATATGTAAAAC
1 AAGTATAATCGGCCATATGAGTGCTTGATGCTATATTATAAGTATTGAGCCACAATATGTAAAAC
73691986 ATTAACTAGTAAAATGCATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGCCTCAAATTGGAC
66 ATTAACTAGTAAAATGCATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGCCTCAAATTGGAC
73692051 AAGTATAATCGGCCATATGAGTGCTTGATGCTATATTATAAGTATTGAGCCACAATATGTAAAAC
1 AAGTATAATCGGCCATATGAGTGCTTGATGCTATATTATAAGTATTGAGCCACAATATGTAAAAC
73692116 ATTAACTAGTAAAATGCATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGCCTCAAATTGGAC
66 ATTAACTAGTAAAATGCATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGCCTCAAATTGGAC
*
73692181 AAGTATATTCGGCC
1 AAGTATAATCGGCC
73692195 TTAGGTAGCC
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 143 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (130 bp):
AAGTATAATCGGCCATATGAGTGCTTGATGCTATATTATAAGTATTGAGCCACAATATGTAAAAC
ATTAACTAGTAAAATGCATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGCCTCAAATTGGAC
Found at i:73692860 original size:40 final size:40
Alignment explanation
Indices: 73692733--73692862 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73692723 ATGCTGGAAA
* *
73692733 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73692773 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73692813 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73692853 TTATATCCGG
1 TTATATCCGG
73692863 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73704418 original size:30 final size:30
Alignment explanation
Indices: 73704382--73704512 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
73704372 GACAAGATTG
* * * * *
73704382 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
73704412 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
73704440 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
73704470 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
73704499 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73704513 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:73704473 original size:58 final size:58
Alignment explanation
Indices: 73704382--73704512 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
73704372 GACAAGATTG
* * * * * *
73704382 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
73704440 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
73704499 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73704513 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:73712356 original size:30 final size:30
Alignment explanation
Indices: 73712320--73712450 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
73712310 GACAAGATTG
* * * * *
73712320 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
73712350 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
73712378 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
73712408 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
73712437 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73712451 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:73712411 original size:58 final size:58
Alignment explanation
Indices: 73712320--73712450 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
73712310 GACAAGATTG
* * * * * *
73712320 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
73712378 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
73712437 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73712451 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:73714196 original size:80 final size:80
Alignment explanation
Indices: 73714112--73714260 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
73714102 TATGGTAACC
* * * *
73714112 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
73714176 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
73714192 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
73714257 CCGG
66 CCGG
73714261 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:73714202 original size:40 final size:38
Alignment explanation
Indices: 73714153--73714260 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
73714143 ATCACGATTT
*
73714153 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
73714193 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
73714233 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
73714261 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:73717905 original size:171 final size:171
Alignment explanation
Indices: 73717620--73717961 Score: 648
Period size: 171 Copynumber: 2.0 Consensus size: 171
73717610 CTCATACAAC
*
73717620 ATTCTCATATACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
1 ATTCTCATACACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
*
73717685 TATTCTTTCTTCACTATAAAATTCCCTGTAATTAAATCCTTAGATACCTCCAATAGGTGGACACT
66 TATTCCTTCTTCACTATAAAATTCCCTGTAATTAAATCCTTAGATACCTCCAATAGGTGGACACT
*
73717750 TTAATGCTAGTATGTTCCAATACTCTAACTCGCCAGCAAGT
131 TTAATGCTAGTATGTTCCAATACTCTAACTCACCAGCAAGT
73717791 ATTCTCATACACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
1 ATTCTCATACACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
*
73717856 TATTCCTTCTTCACTATAAAATTCCCTGTAATTAAATCCTTAGATACCTCCAATAGGTGGATACT
66 TATTCCTTCTTCACTATAAAATTCCCTGTAATTAAATCCTTAGATACCTCCAATAGGTGGACACT
73717921 TTAATGCTAGTATGTTCCAATACTCTAACTCACCAGCAAGT
131 TTAATGCTAGTATGTTCCAATACTCTAACTCACCAGCAAGT
73717962 CAGCAGGGTG
Statistics
Matches: 167, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
171 167 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.33
Consensus pattern (171 bp):
ATTCTCATACACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
TATTCCTTCTTCACTATAAAATTCCCTGTAATTAAATCCTTAGATACCTCCAATAGGTGGACACT
TTAATGCTAGTATGTTCCAATACTCTAACTCACCAGCAAGT
Found at i:73719419 original size:29 final size:27
Alignment explanation
Indices: 73719363--73719436 Score: 85
Period size: 29 Copynumber: 2.7 Consensus size: 27
73719353 ATAGAGTACA
**
73719363 CCACAAAGGCTATATATATAGTGTATG
1 CCACAAAGGCTATATATATAAAGTATG
*
73719390 CCACAAAGGCTACATGTATATAAAGTATG
1 CCACAAAGGCT--ATATATATAAAGTATG
* *
73719419 CCGCAAAGGCAATATATA
1 CCACAAAGGCTATATATA
73719437 CGAAGTACAC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 17 0.44
29 22 0.56
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (27 bp):
CCACAAAGGCTATATATATAAAGTATG
Found at i:73729527 original size:19 final size:19
Alignment explanation
Indices: 73729503--73729543 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
73729493 ATCAAAAAAG
*
73729503 GTGGGCAATAGGTATATTT
1 GTGGGCAATAGGAATATTT
73729522 GTGGGCAATAGGAATATTT
1 GTGGGCAATAGGAATATTT
73729541 GTG
1 GTG
73729544 ATTTGTGGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.05, G:0.34, T:0.34
Consensus pattern (19 bp):
GTGGGCAATAGGAATATTT
Found at i:73731339 original size:65 final size:65
Alignment explanation
Indices: 73731235--73731377 Score: 241
Period size: 65 Copynumber: 2.2 Consensus size: 65
73731225 AAGGGACATG
** **
73731235 TTTGGTGTGTTAAAGAGTGTTAGCTTTATGTTTCACTTTTGGGATATGTTCGGCTCTATGAGTGA
1 TTTGGTGTGTTGGAGAGTGTTAGCTTTATACTTCACTTTTGGGATATGTTCGGCTCTATGAGTGA
*
73731300 TTTGGTGTGTTGGAGAGTGTTAGCTTTATACTTCACTTTTGGGATATGTTTGGCTCTATGAGTGA
1 TTTGGTGTGTTGGAGAGTGTTAGCTTTATACTTCACTTTTGGGATATGTTCGGCTCTATGAGTGA
73731365 TTTGGTGTGTTGG
1 TTTGGTGTGTTGG
73731378 GGATCCGTGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 73 1.00
ACGTcount: A:0.16, C:0.08, G:0.30, T:0.45
Consensus pattern (65 bp):
TTTGGTGTGTTGGAGAGTGTTAGCTTTATACTTCACTTTTGGGATATGTTCGGCTCTATGAGTGA
Found at i:73735266 original size:9 final size:9
Alignment explanation
Indices: 73735252--73735281 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
73735242 TGCAGATTAT
73735252 TTTGTATCA
1 TTTGTATCA
73735261 TTTGTATCA
1 TTTGTATCA
73735270 TTTGTATCA
1 TTTGTATCA
73735279 TTT
1 TTT
73735282 TCGGTTTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (9 bp):
TTTGTATCA
Found at i:73739777 original size:44 final size:44
Alignment explanation
Indices: 73739725--73739810 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
73739715 ACTATGTATC
73739725 TGAACTCATGAGTCGTGGTCTGAGTTCATGATATATGTGACATT
1 TGAACTCATGAGTCGTGGTCTGAGTTCATGATATATGTGACATT
*
73739769 TGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGACA
1 TGAACTCATGAGTCGTGGTCTGAGTTCATGATATATGTGACA
73739811 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (44 bp):
TGAACTCATGAGTCGTGGTCTGAGTTCATGATATATGTGACATT
Found at i:73742865 original size:40 final size:40
Alignment explanation
Indices: 73742820--73742949 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73742810 CGGAATACAA
73742820 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
73742860 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73742900 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
73742940 CCGGATATAA
1 CCGGATATAA
73742950 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73743720 original size:130 final size:130
Alignment explanation
Indices: 73743487--73743760 Score: 521
Period size: 130 Copynumber: 2.1 Consensus size: 130
73743477 GGCTACCTAA
*
73743487 GGCCGAATATACTTGTCCAATTTGAGGCCAATTATACACATAATACCACACAAAAACAGCATGCA
1 GGCCGATTATACTTGTCCAATTTGAGGCCAATTATACACATAATACCACACAAAAACAGCATGCA
*
73743552 TTTTACTAGTTAATGTTTTATATATTGTGGCTCAATACTTATAATATAGCATCAAGCACTCATAT
66 TTTTACTAGTTAATGTTTTACATATTGTGGCTCAATACTTATAATATAGCATCAAGCACTCATAT
*
73743617 GGCCGATTATACTTGTCCAATTTGAGGCCAATTATACACTTAATACCACACAAAAACAGCATGCA
1 GGCCGATTATACTTGTCCAATTTGAGGCCAATTATACACATAATACCACACAAAAACAGCATGCA
73743682 TTTTACTAGTTAATGTTTTACATATTGTGGCTCAATACTTATAATATAGCATCAAGCACTCATAT
66 TTTTACTAGTTAATGTTTTACATATTGTGGCTCAATACTTATAATATAGCATCAAGCACTCATAT
73743747 GGCCGATTATACTT
1 GGCCGATTATACTT
73743761 AGTCATACTT
Statistics
Matches: 141, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 141 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (130 bp):
GGCCGATTATACTTGTCCAATTTGAGGCCAATTATACACATAATACCACACAAAAACAGCATGCA
TTTTACTAGTTAATGTTTTACATATTGTGGCTCAATACTTATAATATAGCATCAAGCACTCATAT
Found at i:73751078 original size:40 final size:40
Alignment explanation
Indices: 73751033--73751199 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73751023 CGGAATATAA
73751033 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73751073 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73751113 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73751153 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73751192 CCGGATAT
1 CCGGATAT
73751200 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73762093 original size:40 final size:39
Alignment explanation
Indices: 73761928--73762111 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
73761918 AAATTGAATG
* * *
73761928 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
73761968 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
73762008 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
73762048 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
73762087 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
73762112 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:73762136 original size:80 final size:81
Alignment explanation
Indices: 73761968--73762156 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
73761958 GCTGGAAATT
* * * *
73761968 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
73762033 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
73762049 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
73762112 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
73762128 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
73762157 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:73763842 original size:30 final size:30
Alignment explanation
Indices: 73763787--73763917 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
73763777 ATAGTGAATC
*
73763787 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
73763816 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
73763846 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
73763874 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
73763904 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73763918 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:73763897 original size:58 final size:58
Alignment explanation
Indices: 73763786--73763917 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
73763776 TATAGTGAAT
* * * * *
73763786 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
73763845 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
73763903 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
73763918 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:73771799 original size:30 final size:30
Alignment explanation
Indices: 73771744--73771874 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
73771734 ATAGTGAATC
*
73771744 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
73771773 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
73771803 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
73771831 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
73771861 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73771875 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:73771854 original size:58 final size:58
Alignment explanation
Indices: 73771743--73771874 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
73771733 TATAGTGAAT
* * * * *
73771743 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
73771802 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
73771860 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
73771875 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:73780712 original size:40 final size:39
Alignment explanation
Indices: 73780547--73780730 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
73780537 AAATTGAATG
* * *
73780547 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
73780587 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
73780627 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
73780667 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
73780706 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
73780731 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:73780755 original size:80 final size:81
Alignment explanation
Indices: 73780587--73780775 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
73780577 GCTGGAAATT
* * * *
73780587 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
73780652 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
73780668 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
73780731 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
73780747 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
73780776 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:73785716 original size:43 final size:43
Alignment explanation
Indices: 73785632--73785717 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
73785622 AAATCTTACA
* * **
73785632 ATGCCAATGTCCCAGACATGGTTTTACATGTAGTCACATATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTACACACATATCG
* *
73785675 ATGCCACTGTCCCAGACAGGGTCTTAC-TCGTACACATATATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACAT-GTACACACATATCG
73785718 GAGTCACATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGTACACACATATCG
Found at i:73787347 original size:43 final size:43
Alignment explanation
Indices: 73787286--73787371 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
73787276 GATATATGTG
* ** *
73787286 GCATCCGAGCTCACTGAGTGGTTTGACTTCATTATGGATGCGA
1 GCATCCGAGCTCACTGAGTAGTCCGACTTCATAATGGATGCGA
* * *
73787329 GCATCGGAGCTCATTGAGTAGTCCGAGTTCATAATGGATGCGA
1 GCATCCGAGCTCACTGAGTAGTCCGACTTCATAATGGATGCGA
73787372 TACATGTGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCACTGAGTAGTCCGACTTCATAATGGATGCGA
Found at i:73789229 original size:36 final size:36
Alignment explanation
Indices: 73789182--73789253 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
73789172 TTAGTGAAGT
73789182 ATGCTAAATCATTAAAATAATGCCATGATGTATATC
1 ATGCTAAATCATTAAAATAATGCCATGATGTATATC
*
73789218 ATGCTAAATCATTAAAATGATGCCATGATGTATATC
1 ATGCTAAATCATTAAAATAATGCCATGATGTATATC
73789254 TTTGATGTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33
Consensus pattern (36 bp):
ATGCTAAATCATTAAAATAATGCCATGATGTATATC
Found at i:73794048 original size:43 final size:43
Alignment explanation
Indices: 73793995--73794077 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
73793985 ATATGTGGCG
* *
73793995 TCCGATCTCGTTGAGTGCTCCGAGTTCATTATGGATGCGAGCA
1 TCCGAGCTCGTTGAGTGCTCCGAGTTCATAATGGATGCGAGCA
* * *
73794038 TCCGAGCTCGTTGAGTGGTCTGATTTCATAATGGATGCGA
1 TCCGAGCTCGTTGAGTGCTCCGAGTTCATAATGGATGCGA
73794078 TACATGTGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (43 bp):
TCCGAGCTCGTTGAGTGCTCCGAGTTCATAATGGATGCGAGCA
Found at i:73806914 original size:40 final size:40
Alignment explanation
Indices: 73806869--73806998 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
73806859 CGGAATACAA
73806869 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
73806909 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
73806949 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
73806989 CCGGATATAA
1 CCGGATATAA
73806999 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73810768 original size:39 final size:39
Alignment explanation
Indices: 73810685--73810842 Score: 237
Period size: 39 Copynumber: 4.1 Consensus size: 39
73810675 GACGTTGGCT
*
73810685 CGAGCTGTGATACCCGGGCTAAGCCCGAA-GCAATTGTG
1 CGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTG
*
73810723 CGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTG
73810762 CGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTG
1 CGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTG
* * * * *
73810801 CGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 CGAGCTATGATACCCGGGCTAAG-CCCGAAGGCAATTGTG
73810841 CG
1 CG
73810843 GGTTACCATA
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
38 27 0.25
39 66 0.60
40 17 0.15
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
CGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTG
Found at i:73810858 original size:78 final size:78
Alignment explanation
Indices: 73810694--73810871 Score: 225
Period size: 78 Copynumber: 2.3 Consensus size: 78
73810684 TCGAGCTGTG
*
73810694 ATACCCGGGCTAAGCCCGAA-GCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 ATACACGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
**
73810758 TGTGCGAGCTATG
66 TGTGCGAGCTACC
* * * * *
73810771 ATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCAT
1 ATACACGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCAA
* *
73810836 TTGTGCGGGTTACC
65 TTGTGCGAGCTACC
*
73810850 ATA-ACGGGCTATGTCCCGAAGG
1 ATACACGGGCTAAG-CCCGAAGG
73810872 TGTTTTGAAC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
77 20 0.23
78 37 0.42
79 31 0.35
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (78 bp):
ATACACGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
TGTGCGAGCTACC
Found at i:73812520 original size:44 final size:41
Alignment explanation
Indices: 73812379--73812520 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 41
73812369 ACTATGTTGA
* * * ** *
73812379 CACTAAGTGTGCGAT-TTGAAATAGCTTCGGCTATAAATAG
1 CACTAAGTGTGTGATATTGGATTAGCTTCGGCTATATGTGG
73812419 CACTAAGTGTGTGA-ATTGGATTAGCTTCGGCTATATGTGG
1 CACTAAGTGTGTGATATTGGATTAGCTTCGGCTATATGTGG
** * **
73812459 CACTAAGTGTGCAATATTGAGA-TAGTTTCAGTTTAATATGATGG
1 CACTAAGTGTGTGATATTG-GATTAGCTTC-GGCT-ATATG-TGG
73812503 CACTAAGTGTGTGATATT
1 CACTAAGTGTGTGATATT
73812521 TTATAACTTC
Statistics
Matches: 83, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
40 45 0.54
41 10 0.12
42 4 0.05
43 5 0.06
44 19 0.23
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (41 bp):
CACTAAGTGTGTGATATTGGATTAGCTTCGGCTATATGTGG
Found at i:73823310 original size:37 final size:37
Alignment explanation
Indices: 73823269--73823362 Score: 102
Period size: 37 Copynumber: 2.6 Consensus size: 37
73823259 TTAGTGCTGA
* * * *
73823269 GGCGTGTTATGGGTTGGATTATCTCTTATTAGCATTT
1 GGCGTGTTATCGGTTGGATTAGCTCTAATGAGCATTT
**
73823306 GGCGTGTTATCGGTTGG-TCTAGCTCTAATGAGTGTTT
1 GGCGTGTTATCGGTTGGAT-TAGCTCTAATGAGCATTT
*
73823343 GGCGTGTT-TTGGTTGGATTA
1 GGCGTGTTATCGGTTGGATTA
73823363 CTTGTGTACT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
36 10 0.21
37 38 0.79
ACGTcount: A:0.14, C:0.11, G:0.32, T:0.44
Consensus pattern (37 bp):
GGCGTGTTATCGGTTGGATTAGCTCTAATGAGCATTT
Found at i:73836178 original size:24 final size:24
Alignment explanation
Indices: 73836125--73836179 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
73836115 AGCTATCCGA
* *
73836125 AGCTTCCCGATATGGTTCTATGTG
1 AGCTTCCCGATATGGCTCTATATG
*
73836149 AACTTCCCGATTATGGCTCT-TATG
1 AGCTTCCCGA-TATGGCTCTATATG
73836173 AGCTTCC
1 AGCTTCC
73836180 TATTATATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (24 bp):
AGCTTCCCGATATGGCTCTATATG
Done.