Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 239 of 438
Found at i:74221497 original size:47 final size:48
Alignment explanation
Indices: 74221418--74221559 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
74221408 GCTTTATCAT
* *
74221418 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
74221467 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
74221514 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
74221560 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:74221518 original size:71 final size:72
Alignment explanation
Indices: 74221417--74221560 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
74221407 TGCTTTATCA
*
74221417 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
74221482 GCCCTTT
66 GCCCTTT
* * **
74221489 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
74221552 AGCCCTTT
65 AGCCCTTT
74221560 T
1 T
74221561 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:74221636 original size:20 final size:20
Alignment explanation
Indices: 74221611--74221670 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
74221601 TATGATTACC
74221611 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
74221631 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
74221651 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
74221671 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:74221641 original size:11 final size:11
Alignment explanation
Indices: 74221611--74221665 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74221601 TATGATTACC
74221611 TCATGTGCATA
1 TCATGTGCATA
*
74221622 TCA--TACATA
1 TCATGTGCATA
74221631 TCATGTGCATA
1 TCATGTGCATA
* *
74221642 TCA--TACATT
1 TCATGTGCATA
74221651 TCATGTGCATA
1 TCATGTGCATA
74221662 TCAT
1 TCAT
74221666 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:74221744 original size:25 final size:25
Alignment explanation
Indices: 74221712--74221759 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74221702 ATACATAAAC
* * *
74221712 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74221737 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74221760 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74224876 original size:21 final size:21
Alignment explanation
Indices: 74224852--74224891 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
74224842 TTTTGAAAAC
* *
74224852 TCAACGACTCTCATTTCTTTT
1 TCAACAACACTCATTTCTTTT
*
74224873 TCAACAACACTCGTTTCTT
1 TCAACAACACTCATTTCTT
74224892 GCATACTTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.30, G:0.05, T:0.42
Consensus pattern (21 bp):
TCAACAACACTCATTTCTTTT
Found at i:74224973 original size:18 final size:18
Alignment explanation
Indices: 74224946--74224989 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
74224936 TTCTCTTTTC
* **
74224946 CTTTTCCTTTTTTGATTT
1 CTTTTTCTTTTTCAATTT
74224964 CTTTTTCTTTTTCAATTT
1 CTTTTTCTTTTTCAATTT
74224982 CTTTTTCT
1 CTTTTTCT
74224990 CTCATTTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (18 bp):
CTTTTTCTTTTTCAATTT
Found at i:74229820 original size:27 final size:28
Alignment explanation
Indices: 74229764--74229833 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74229754 AAATTTGTAC
74229764 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
74229792 AGCACTAAGTGTGCTAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74229819 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74229834 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74229844 original size:27 final size:27
Alignment explanation
Indices: 74229764--74229845 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74229754 AAATTTGTAC
* *
74229764 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * * *
74229792 AGCACTAAGTGTGCTAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74229819 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74229846 GCTTTTGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.62
28 17 0.36
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74236640 original size:40 final size:40
Alignment explanation
Indices: 74236573--74236749 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
74236563 ACCCAAGTAT
*
74236573 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
74236612 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
74236652 CTTCGGGTCTTAGCCCAGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
74236692 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
74236732 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
74236750 TTATCATCCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 102 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:74241420 original size:29 final size:30
Alignment explanation
Indices: 74241387--74241492 Score: 141
Period size: 29 Copynumber: 3.7 Consensus size: 30
74241377 GGTGACGACC
74241387 ATCGAATT-TGAAAAGGGATAGCTTTGGCT
1 ATCGAATTATGAAAAGGGATAGCTTTGGCT
* **
74241416 ATCGAA-TATGAAAAGGAATAGCTTCAGCT
1 ATCGAATTATGAAAAGGGATAGCTTTGGCT
74241445 ATC-AATTATGAAAAGGGATAG-TTTCGGCT
1 ATCGAATTATGAAAAGGGATAGCTTT-GGCT
74241474 ATCG-ATTATGAAAAGGGAT
1 ATCGAATTATGAAAAGGGAT
74241493 GGTAACAACC
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.07
29 62 0.93
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (30 bp):
ATCGAATTATGAAAAGGGATAGCTTTGGCT
Found at i:74241506 original size:29 final size:29
Alignment explanation
Indices: 74241449--74241593 Score: 146
Period size: 29 Copynumber: 5.0 Consensus size: 29
74241439 TCAGCTATCA
* * ** *
74241449 ATTATGAAAAGGGATAGTTTCGGCTATCG
1 ATTATGAAAAGGGATGGTTACAACCATCG
*
74241478 ATTATGAAAAGGGATGGTAACAACCATCG
1 ATTATGAAAAGGGATGGTTACAACCATCG
* *
74241507 ATTATGAAAAGGGATGCTGACAACCATCG
1 ATTATGAAAAGGGATGGTTACAACCATCG
* ***
74241536 ATTAATGCAAAGGGATGGTTTTGACCATCG
1 ATT-ATGAAAAGGGATGGTTACAACCATCG
* * *
74241566 AATATGAAAAGGGACGGTTACGACCATC
1 ATTATGAAAAGGGATGGTTACAACCATC
74241594 ATTTAGCACA
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
29 74 0.77
30 22 0.23
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (29 bp):
ATTATGAAAAGGGATGGTTACAACCATCG
Found at i:74241511 original size:58 final size:58
Alignment explanation
Indices: 74241384--74241521 Score: 165
Period size: 58 Copynumber: 2.4 Consensus size: 58
74241374 GCAGGTGACG
*
74241384 ACCATCGAATT-TGAAAAGGGATAGCTTTGGCTATCGAATATGAAAAGGAATAGCTTCA
1 ACCATCG-ATTATGAAAAGGGATAGCTTTGGCTATCGAATATGAAAAGGAATAGCTACA
* * * * * *
74241442 GCTATCAATTATGAAAAGGGATAG-TTTCGGCTATCGATTATGAAAAGGGAT-GGTAACA
1 ACCATCGATTATGAAAAGGGATAGCTTT-GGCTATCGAATATGAAAAGGAATAGCT-ACA
74241500 ACCATCGATTATGAAAAGGGAT
1 ACCATCGATTATGAAAAGGGAT
74241522 GCTGACAACC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
57 8 0.12
58 59 0.88
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (58 bp):
ACCATCGATTATGAAAAGGGATAGCTTTGGCTATCGAATATGAAAAGGAATAGCTACA
Found at i:74241592 original size:59 final size:58
Alignment explanation
Indices: 74241451--74241593 Score: 151
Period size: 59 Copynumber: 2.4 Consensus size: 58
74241441 AGCTATCAAT
* * * * *
74241451 TATGAAAAGGGATAGTTTCGGCTATCGATTATGAAAAGGGATGGTAACAACCATCGAT
1 TATGAAAAGGGATGGTTACGACCATCGATTATGAAAAGGGATGGTAACAACCATCGAA
* * * * ****
74241509 TATGAAAAGGGATGCTGACAACCATCGATTAATGCAAAGGGATGGTTTTGACCATCGAA
1 TATGAAAAGGGATGGTTACGACCATCGATT-ATGAAAAGGGATGGTAACAACCATCGAA
*
74241568 TATGAAAAGGGACGGTTACGACCATC
1 TATGAAAAGGGATGGTTACGACCATC
74241594 ATTTAGCACA
Statistics
Matches: 67, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
58 23 0.34
59 44 0.66
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (58 bp):
TATGAAAAGGGATGGTTACGACCATCGATTATGAAAAGGGATGGTAACAACCATCGAA
Found at i:74242241 original size:37 final size:37
Alignment explanation
Indices: 74242189--74242263 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
74242179 ATTCAGATGT
74242189 TAGTAAATTGCTTATACTTTGAATAAATCTATCTATG
1 TAGTAAATTGCTTATACTTTGAATAAATCTATCTATG
*
74242226 TAGTAAATTGTTTATACTTTGAATAAATCTATCTATG
1 TAGTAAATTGCTTATACTTTGAATAAATCTATCTATG
74242263 T
1 T
74242264 CATGGATAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (37 bp):
TAGTAAATTGCTTATACTTTGAATAAATCTATCTATG
Found at i:74252418 original size:26 final size:25
Alignment explanation
Indices: 74252362--74252419 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
74252352 TTTCCCATCC
74252362 CTATTTTACCCTATCAAAATTTTGA
1 CTATTTTACCCTATCAAAATTTTGA
*
74252387 CAATTTTACCTCTAGT-AAAATTTTGA
1 CTATTTTACC-CTA-TCAAAATTTTGA
*
74252413 TTATTTT
1 CTATTTT
74252420 GCCCGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.32
26 18 0.64
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.05, T:0.48
Consensus pattern (25 bp):
CTATTTTACCCTATCAAAATTTTGA
Found at i:74253869 original size:48 final size:48
Alignment explanation
Indices: 74253795--74253940 Score: 231
Period size: 48 Copynumber: 3.0 Consensus size: 48
74253785 TAAGGTTATG
*
74253795 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCGATA
74253843 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCAT-GAATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCG-ATA
* * * *
74253891 TTTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGTATCGATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCGATA
74253939 TG
1 TG
74253941 AGACATCGTG
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
47 1 0.01
48 88 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGCATCGATA
Found at i:74257546 original size:49 final size:49
Alignment explanation
Indices: 74257493--74257680 Score: 236
Period size: 49 Copynumber: 3.8 Consensus size: 49
74257483 TAGACAAGGC
**
74257493 TATCTGATATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
74257542 TATCT-AGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* * *
74257593 TAT-TGGGTACGCATAGTAGCCTGCACTTAGTACTACGCATGCGACCAAT
1 TATCT-GATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
74257642 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
74257681 CGTGACCTCA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
48 1 0.01
49 73 0.61
50 8 0.07
51 37 0.31
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (49 bp):
TATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:74257580 original size:26 final size:26
Alignment explanation
Indices: 74257504--74257580 Score: 72
Period size: 26 Copynumber: 3.1 Consensus size: 26
74257494 ATCTGATATG
74257504 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
* * * * *
74257530 CAT-G-CGAC--CAATTATCTAGTACA
1 CATAGTAGCCTGCACTTA-GTACTACA
74257553 CATAGTAGCCTGCACTTAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
74257579 CA
1 CA
74257581 CGTGATCGAA
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 5 0.14
23 9 0.25
24 3 0.08
25 3 0.08
26 11 0.31
27 5 0.14
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (26 bp):
CATAGTAGCCTGCACTTAGTACTACA
Found at i:74257634 original size:100 final size:100
Alignment explanation
Indices: 74257503--74257685 Score: 339
Period size: 100 Copynumber: 1.8 Consensus size: 100
74257493 TATCTGATAT
74257503 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACATAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACATAGTAGCCTGCAC
74257568 TTAGTACTACACACGTGATCGAAGTTATTGGGTAC
66 TTAGTACTACACACGTGATCGAAGTTATTGGGTAC
* * *
74257603 GCATAGTAGCCTGCACTTAGTACTACGCATGCGACCAATTATCTGGTACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACATAGTAGCCTGCAC
74257668 TTAGTACTACACACGTGA
66 TTAGTACTACACACGTGA
74257686 CCTCACAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (100 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACATAGTAGCCTGCAC
TTAGTACTACACACGTGATCGAAGTTATTGGGTAC
Found at i:74257954 original size:27 final size:27
Alignment explanation
Indices: 74257914--74257967 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74257904 AGGTAAAACC
* *
74257914 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACACTAATTTAACATTCAATT
**
74257941 CATGTAACACTAATTTGCCATTCAATT
1 CATGTAACACTAATTTAACATTCAATT
74257968 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACACTAATTTAACATTCAATT
Found at i:74263140 original size:40 final size:39
Alignment explanation
Indices: 74263096--74263317 Score: 284
Period size: 40 Copynumber: 5.6 Consensus size: 39
74263086 GCCACTAGCT
*
74263096 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
74263136 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
74263175 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
74263215 CGAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
74263255 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
74263295 CAAATG-CTCTCGGGACTTAGCCC
1 CAAATGCCT-TCGGGACTTAGCCC
74263318 TGTTATCATC
Statistics
Matches: 165, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 39 0.24
40 126 0.76
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:74263194 original size:79 final size:80
Alignment explanation
Indices: 74263096--74263317 Score: 297
Period size: 79 Copynumber: 2.8 Consensus size: 80
74263086 GCCACTAGCT
* *
74263096 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
74263161 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* * *
74263175 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
74263240 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
* ** * *
74263255 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGCCC
74263318 TGTTATCATC
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
79 63 0.50
80 62 0.50
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:74271544 original size:40 final size:40
Alignment explanation
Indices: 74271458--74271639 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
74271448 CACTAGCTCA
* * *
74271458 AATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACG
*
74271497 AACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACG
74271537 AATGCCTTCGGGACTTAGCCCGG-TATAGTAGCTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACG
* *
74271576 AATGCCCTCGGGACGTAGCCCGGATATAGTAGCTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACG
74271616 AATGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
74271640 ATTAGCCATT
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 59 0.45
40 73 0.55
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACG
Found at i:74271553 original size:79 final size:79
Alignment explanation
Indices: 74271458--74271638 Score: 308
Period size: 79 Copynumber: 2.3 Consensus size: 79
74271448 CACTAGCTCA
* *
74271458 AATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATA
1 AATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCACAAACGCCCTCGGGACGTAGCCCGGATA
74271523 TAGTAGCTCGCACG
66 TAGTAGCTCGCACG
* * * *
74271537 AATGCCTTCGGGACTTAGCCCGGTATAGTAGCTCGCACGAATGCCCTCGGGACGTAGCCCGGATA
1 AATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCACAAACGCCCTCGGGACGTAGCCCGGATA
74271602 TAGTAGCTCGCACG
66 TAGTAGCTCGCACG
74271616 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
74271639 AATTAGCCAT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 96 1.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCACAAACGCCCTCGGGACGTAGCCCGGATA
TAGTAGCTCGCACG
Found at i:74271660 original size:40 final size:38
Alignment explanation
Indices: 74271456--74271678 Score: 243
Period size: 40 Copynumber: 5.7 Consensus size: 38
74271446 GCCACTAGCT
* *
74271456 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATATTAGCTCGCA
*
74271495 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAT--TAGCTCGCA
* *
74271535 CGAATGCCTTCGGGACTTAGCCCGGTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATATTAGCTCGCA
* * *
74271574 CGAATGCCCTCGGGACGTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAT--TAGCTCGCA
* * *
74271614 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCATTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAG-C--TCGCA
74271654 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
74271679 TTATCATCCG
Statistics
Matches: 161, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
37 3 0.02
38 7 0.04
39 60 0.37
40 88 0.55
41 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGCTCGCA
Found at i:74274104 original size:29 final size:29
Alignment explanation
Indices: 74274069--74274138 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
74274059 TGAGATTGGT
* *
74274069 ACTAAGTGTGCGGGCTTGAAA-TGCATGGC
1 ACTAAGTGTGCGAG-TTGAAAGTACATGGC
*
74274098 ACTAAGTGTGCGAGTTTAAAGTACATGGC
1 ACTAAGTGTGCGAGTTGAAAGTACATGGC
74274127 ACTAAGTGTGCG
1 ACTAAGTGTGCG
74274139 TGGTTGATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 5 0.14
29 32 0.86
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCGAGTTGAAAGTACATGGC
Found at i:74279220 original size:44 final size:42
Alignment explanation
Indices: 74279159--74279315 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
74279149 TGTGTTATCG
* *
74279159 TGTAAGACCACATCTGGGATGTTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGATGTTGGCATCGA-TT-TGATTTACA
*
74279203 TGTAAGACCACGTCTGGGATGTTGGAATCGTATTTGATTT-CA
1 TGTAAGACCACGTCTGGGATGTTGGCATCG-ATTTGATTTACA
* * *
74279245 TGTAAGACC-CTCTCTGGGACAG-TGGCATCTATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGA-TGTTGGCATC--GATTTGATTTACA
*
74279288 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGATGTTGGCAT
74279316 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 37 0.39
44 31 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGATTTGATTTACA
Found at i:74281911 original size:22 final size:22
Alignment explanation
Indices: 74281863--74281911 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
74281853 TCATAATAGC
74281863 ATCATATAACATAAATGAGTGT
1 ATCATATAACATAAATGAGTGT
* *
74281885 GTCATATAACATAAATGAGTTT
1 ATCATATAACATAAATGAGTGT
74281907 ATCAT
1 ATCAT
74281912 GGAAAGAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (22 bp):
ATCATATAACATAAATGAGTGT
Found at i:74283771 original size:29 final size:29
Alignment explanation
Indices: 74283737--74283868 Score: 203
Period size: 29 Copynumber: 4.6 Consensus size: 29
74283727 TAATCAGCCG
** *
74283737 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
74283766 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
74283795 CACACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
74283824 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
74283853 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
74283869 ATCTCTCAAC
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
28 3 0.03
29 93 0.97
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:74287670 original size:24 final size:25
Alignment explanation
Indices: 74287593--74287686 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
74287583 AGGAAGTGCT
* *
74287593 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* **
74287618 AAAAAGGCTTTGCCTTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
74287643 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
74287667 AAAAGGGCTTTTCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
74287687 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
24 19 0.31
25 42 0.69
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:74287699 original size:24 final size:24
Alignment explanation
Indices: 74287593--74287699 Score: 99
Period size: 25 Copynumber: 4.4 Consensus size: 24
74287583 AGGAAGTGCT
* * *
74287593 AAAAGGGCTATGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* ** *
74287617 GAAAAAGGCTTTGCCTTAGTTTACC
1 -AAAAGGGCTTTGCCCCAGTTTATC
74287642 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
74287667 AAAAGGGCTTTTCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
74287690 AAAAGAGGCT
1 AAAAG-GGCT
74287700 AGGCCTCCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
23 9 0.12
24 21 0.29
25 42 0.58
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:74289458 original size:46 final size:46
Alignment explanation
Indices: 74289360--74289531 Score: 152
Period size: 47 Copynumber: 3.7 Consensus size: 46
74289350 GACGAGGGCT
*
74289360 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* *
74289406 AATGTAAAACATGTCTGGGACATGCATCGG-CTACGAGATG-ATAGTC
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCT-CGAGATGTA-AGCC
* * * * * * *
74289452 AGTGTAAGACCATGTTTGGGACATAACATC-GACTTGAGATATGAGCC
1 AGTGTAA-AACATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
** *
74289499 AGTGTAAGAATGTGTCTAGGACATGGCATCGGC
1 AGTGTAA-AACATGTCTGGGACAT-GCATCGGC
74289532 ACTTTAACCT
Statistics
Matches: 100, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 3 0.03
46 44 0.44
47 46 0.46
48 7 0.07
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAAACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:74289491 original size:47 final size:47
Alignment explanation
Indices: 74289266--74289507 Score: 180
Period size: 46 Copynumber: 5.2 Consensus size: 47
74289256 TGTGTGAGCT
* * *
74289266 AGTGTAAGA-CATGTCTAGGACATGCATCGAC-C-ATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGAT-A-AGCC
* * * ** *
74289312 AGTGTAAGACCATGTTTGGGACATGGCATC-AGCATTGAGACGA-GGGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGA-C-TCGAGATGATAAGCC
*
74289360 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GACTCGAGATGATAAGCC
* * * *
74289406 AATGTAA-AACATGTCTGGGACATGCATCGGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATGATAAGCC
* * * *
74289452 AGTGTAAGACCATGTTTGGGACATAACATCGACTTGAGAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGATAAGCC
74289499 AGTGTAAGA
1 AGTGTAAGA
74289508 ATGTGTCTAG
Statistics
Matches: 155, Mismatches: 26, Indels: 29
0.74 0.12 0.14
Matches are distributed among these distances:
45 4 0.03
46 65 0.42
47 59 0.38
48 24 0.15
51 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGATAAGCC
Found at i:74289491 original size:93 final size:94
Alignment explanation
Indices: 74289266--74289531 Score: 215
Period size: 94 Copynumber: 2.8 Consensus size: 94
74289256 TGTGTGAGCT
* * * * * *
74289266 AGTGTAAGACATGTCTAGGACATGCATC-GAC-C-ATATTATGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACATGTCTGGGACATACATCGGACTCGAGA-TAT-A-AGCCAATGTAAGAACATGTC
* * * * * *
74289328 TGGGACATGGCATCAGC-ATTGAGACGA-GGGC
63 TAGGACATGGCATCGGCTA-CGAGATGATAGTC
* * * *
74289359 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAATGTAA-AACATGTCTG
1 -AGTGTAAGACATGTCTGGGACATACATCGGACTCGAGATATAAGCCAATGTAAGAACATGTCTA
74289423 GGACAT-GCATCGGCTACGAGATGATAGTC
65 GGACATGGCATCGGCTACGAGATGATAGTC
* * * * **
74289452 AGTGTAAGACCATGTTTGGGACATAACATC-GACTTGAGATATGAGCCAGTGTAAGAATGTGTCT
1 AGTGTAAGA-CATGTCTGGGACAT-ACATCGGACTCGAGATATAAGCCAATGTAAGAACATGTCT
74289516 AGGACATGGCATCGGC
64 AGGACATGGCATCGGC
74289532 ACTTTAACCT
Statistics
Matches: 141, Mismatches: 22, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
92 22 0.16
93 49 0.35
94 54 0.38
95 11 0.08
96 3 0.02
97 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATACATCGGACTCGAGATATAAGCCAATGTAAGAACATGTCTAG
GACATGGCATCGGCTACGAGATGATAGTC
Found at i:74290204 original size:47 final size:47
Alignment explanation
Indices: 74290120--74290214 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 47
74290110 CTTATATTGT
* *
74290120 CCACACGGGTAGGCACACGGGCGTATGTCTAGCCCGTGTGTGACACA
1 CCACACAGGTAGGCACACGGGCGTACGTCTAGCCCGTGTGTGACACA
* * * * *
74290167 CCACACAGGTAGGCACACGGGTGTGCGTTTGGGCCGTGTGTGACACA
1 CCACACAGGTAGGCACACGGGCGTACGTCTAGCCCGTGTGTGACACA
74290214 C
1 C
74290215 GGTCTACCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18
Consensus pattern (47 bp):
CCACACAGGTAGGCACACGGGCGTACGTCTAGCCCGTGTGTGACACA
Found at i:74293580 original size:40 final size:40
Alignment explanation
Indices: 74293505--74293726 Score: 351
Period size: 40 Copynumber: 5.6 Consensus size: 40
74293495 AACCCAAGTA
*
74293505 CCTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-T-AGCACAAATG
* *
74293544 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
74293584 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
74293624 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
74293664 CCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
74293704 CCTTTGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
74293727 CATTCGAATA
Statistics
Matches: 172, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 13 0.08
40 156 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:74295588 original size:30 final size:29
Alignment explanation
Indices: 74295545--74295608 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
74295535 GTCACAGTCG
*
74295545 AAGCTAGTTAAATCACACATTTAGTGCCA
1 AAGCTAGTTAAATCACACACTTAGTGCCA
*
74295574 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCACACACTTAGTGCCA
74295604 AAGCT
1 AAGCT
74295609 TCTGATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCACACACTTAGTGCCA
Found at i:74297253 original size:49 final size:50
Alignment explanation
Indices: 74297173--74297418 Score: 325
Period size: 49 Copynumber: 4.9 Consensus size: 50
74297163 AGCTATTGTG
* *
74297173 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
74297223 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
74297273 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
74297323 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
74297373 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
74297419 GCTTCGGCTA
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 83 0.49
50 48 0.28
51 38 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:74297310 original size:28 final size:28
Alignment explanation
Indices: 74297278--74297361 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
74297268 AACTTCGATC
74297278 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
74297306 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
74297328 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
74297356 ACGTGT
1 ACGTGT
74297362 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:74305853 original size:30 final size:29
Alignment explanation
Indices: 74305806--74305873 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 29
74305796 GCCTCAAGTA
*
74305806 GCCAAAGCTAGTTAAATCGCACATTTAGT
1 GCCAAAGCTAGTTAAATCGCACACTTAGT
*
74305835 GCCAAAGCTAGTTTAAATCGGACACTTAGT
1 GCCAAAGCTAG-TTAAATCGCACACTTAGT
74305865 GCCAAAGCT
1 GCCAAAGCT
74305874 TTCGATTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 11 0.31
30 25 0.69
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (29 bp):
GCCAAAGCTAGTTAAATCGCACACTTAGT
Found at i:74308957 original size:40 final size:40
Alignment explanation
Indices: 74308895--74309116 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
74308885 AAACCAAGTA
* * *
74308895 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
74308934 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74308974 CCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
74309014 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
74309053 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
74309093 CCTTCGGGACTTAGTCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATA
74309117 ATCCGAATAT
Statistics
Matches: 166, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 52 0.31
40 113 0.68
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74309054 original size:79 final size:78
Alignment explanation
Indices: 74308895--74309116 Score: 304
Period size: 79 Copynumber: 2.8 Consensus size: 78
74308885 AAACCAAGTA
* * *
74308895 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGAT-TAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
74308959 TAGTTCGCACAAATG
64 TAACTCGCACAAATG
74308974 CCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAG
1 CCTTCGGGACTTAGCCCGGAT-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
74309038 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* * *
74309053 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGTCCGGTTATA
1 CCTTCGGGACTTAGCCCGG-ATTAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
74309117 ATCCGAATAT
Statistics
Matches: 129, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
79 83 0.64
80 46 0.36
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATTAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
ACTCGCACAAATG
Found at i:74309106 original size:119 final size:119
Alignment explanation
Indices: 74308895--74309111 Score: 316
Period size: 119 Copynumber: 1.8 Consensus size: 119
74308885 AAACCAAGTA
* *
74308895 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
74308960 AGTTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATG
66 AGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATG
*
74309014 CCTTCGGGACTTAGCCCGGA-ATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATT
1 CCTTCGGGACTTA-ACCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
74309076 AGTCA-CTAGCACAAATGCCTTCGGGACTTAGTCCGG
63 AGT-AGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
74309112 TTATAATCCG
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
118 2 0.02
119 80 0.91
120 6 0.07
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATG
Found at i:74313761 original size:43 final size:43
Alignment explanation
Indices: 74313714--74313846 Score: 155
Period size: 43 Copynumber: 3.1 Consensus size: 43
74313704 TAGGGCGTTC
74313714 GCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACATTG
1 GCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACATTG
* * *
74313757 GCATCG-TAATTGTGATTT-GTGTAAGACCCTGTCTGGGACAGTG
1 GCATCGAT-A-TGTGATTTCGAGTAAGACCATGTCTGGGACATTG
* * * *
74313800 GCATCGACATGTGATTAC-ATGTAAGACCACGTCTGGGACGTTG
1 GCATCGATATGTGATTTCGA-GTAAGACCATGTCTGGGACATTG
74313843 GCAT
1 GCAT
74313847 TGTATGATAT
Statistics
Matches: 75, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
42 8 0.11
43 59 0.79
44 8 0.11
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
GCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACATTG
Found at i:74334910 original size:55 final size:52
Alignment explanation
Indices: 74334765--74334950 Score: 149
Period size: 55 Copynumber: 3.5 Consensus size: 52
74334755 AACTTACCAT
* * * *
74334765 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCATCAT
1 TGCCATGTCTTGACATGGTCTTACATGAT-TCCTTGCCTTATCAACTCATCAA
* * * * *
74334818 TGCCATGCCTTGGCATGGTCTTACATGGGA-TCTTTGCCTTATCATAGTTTATCAA
1 TGCCATGTCTTGACATGGTCTTACAT--GATTCCTTGCCTTATCA-A-CTCATCAA
* * * * * *
74334873 TGCCATGTCTTGACATGGTATTACCTGAATTCCTTGCCTTGTAAAACTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATG-ATTCCTTGCCTTAT-CAACTCATCAA
* *
74334927 TGCCATGCCTTGGCATGGTCTTAC
1 TGCCATGTCTTGACATGGTCTTAC
74334951 TTGGTATCCT
Statistics
Matches: 105, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
53 36 0.34
54 29 0.28
55 39 0.37
56 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (52 bp):
TGCCATGTCTTGACATGGTCTTACATGATTCCTTGCCTTATCAACTCATCAA
Found at i:74348971 original size:32 final size:32
Alignment explanation
Indices: 74348935--74349001 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
74348925 GATTTCAAAA
74348935 GTTAACATTGATGTTAAATGAAGTTTTTGAAT
1 GTTAACATTGATGTTAAATGAAGTTTTTGAAT
* * *
74348967 GTTAACATTGATGTTAACTGATGTTTTTGGAT
1 GTTAACATTGATGTTAAATGAAGTTTTTGAAT
74348999 GTT
1 GTT
74349002 GCTGGTAGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.46
Consensus pattern (32 bp):
GTTAACATTGATGTTAAATGAAGTTTTTGAAT
Found at i:74351047 original size:27 final size:27
Alignment explanation
Indices: 74350985--74351052 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
74350975 TAAAGTGTAA
74350985 AATAAAAATAAAATAAAACAACAAAGT
1 AATAAAAATAAAATAAAACAACAAAGT
* * *
74351012 -CTCACAAATAAAATAAAAACAACCAA-T
1 AAT-AAAAATAAAAT-AAAACAACAAAGT
74351039 AATAAAAATAAAAT
1 AATAAAAATAAAAT
74351053 TACAATCGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
26 1 0.03
27 21 0.64
28 11 0.33
ACGTcount: A:0.71, C:0.12, G:0.01, T:0.16
Consensus pattern (27 bp):
AATAAAAATAAAATAAAACAACAAAGT
Found at i:74353929 original size:54 final size:54
Alignment explanation
Indices: 74353855--74353987 Score: 248
Period size: 54 Copynumber: 2.5 Consensus size: 54
74353845 GTCATTATAA
*
74353855 GGGATTTCGCCTGGACTGGTAATCCCGAAATCACTTTATGAGTTCATATAATGG
1 GGGATTTAGCCTGGACTGGTAATCCCGAAATCACTTTATGAGTTCATATAATGG
*
74353909 GGGATTTAGCCTAGACTGGTAATCCCGAAATCACTTTATGAGTTCATATAATGG
1 GGGATTTAGCCTGGACTGGTAATCCCGAAATCACTTTATGAGTTCATATAATGG
74353963 GGGATTTAGCCTGGACTGGTAATCC
1 GGGATTTAGCCTGGACTGGTAATCC
74353988 TACCATATGA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (54 bp):
GGGATTTAGCCTGGACTGGTAATCCCGAAATCACTTTATGAGTTCATATAATGG
Found at i:74356001 original size:27 final size:27
Alignment explanation
Indices: 74355970--74356273 Score: 322
Period size: 27 Copynumber: 11.3 Consensus size: 27
74355960 TTAGTTTACC
*
74355970 AAATTACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
74355997 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
74356024 AAATTACTAAAATACCCTTGGTTTATT
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
74356051 AAATCACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
74356078 AAATTACTAAAATACCTTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
74356105 AAATTACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
74356132 AAATTACCAAAATACCTTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
74356159 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
74356186 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*** * ***
74356213 AAATTATTGAAGTA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* *
74356240 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
74356267 AAATTAC
1 AAATTAC
74356274 TGAAGTACCC
Statistics
Matches: 227, Mismatches: 48, Indels: 4
0.81 0.17 0.01
Matches are distributed among these distances:
26 4 0.02
27 219 0.96
28 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:74356240 original size:81 final size:81
Alignment explanation
Indices: 74355970--74356339 Score: 341
Period size: 81 Copynumber: 4.6 Consensus size: 81
74355960 TTAGTTTACC
* *
74355970 AAATTACCAAAATACCC-CTGGCTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAA
1 AAATTACCAAAATACCCTC-GACTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
* ** * *
74356034 AATACCCTTGGTTTATT
65 AATACCCCTGACTTGTA
* * * ** * ** * *
74356051 AAATCACCAAAATACCATTGGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
*
74356116 ATACCCCTGGCTTGTA
66 ATACCCCTGACTTGTA
* * ** *
74356132 AAATTACCAAAATACCTTTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
* *
74356197 ATACCCCTGATTTGTG
66 ATACCCCTGACTTGTA
*** * * * **
74356213 AAATTATTGAAGTACCCTCGACCTGTAAAATTACCAAAATACCCCT-GATTTGTGAAATTACTGA
1 AAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAA
* *
74356277 AGTA-CCCTCGACCTGTA
65 AATACCCCT-GACTTGTA
*** *
74356294 AAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCT
1 AAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCT
74356340 GATTTATAGA
Statistics
Matches: 241, Mismatches: 45, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
80 5 0.02
81 236 0.98
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTGACTTGTA
Found at i:74356282 original size:27 final size:27
Alignment explanation
Indices: 74355970--74356354 Score: 305
Period size: 27 Copynumber: 14.3 Consensus size: 27
74355960 TTAGTTTACC
**
74355970 AAATTACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
74355997 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * * * *
74356024 AAATTACTAAAATACCCTTGGTTTATT
1 AAATTACCAAAATACCCCTGATTTGTA
* ** *
74356051 AAATCACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* ** *
74356078 AAATTACTAAAATACCTTTTG-TTTATA
1 AAATTACCAAAATACC-CCTGATTTGTA
**
74356105 AAATTACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
** *
74356132 AAATTACCAAAATACCTTTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
74356159 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
74356186 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*** * **
74356213 AAATTATTGAAGTA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
74356240 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** * **
74356267 AAATTACTGAAGTA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
74356294 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
74356321 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
74356348 GAATTAC
1 AAATTAC
74356355 TGTTTTACCC
Statistics
Matches: 288, Mismatches: 60, Indels: 20
0.78 0.16 0.05
Matches are distributed among these distances:
26 10 0.03
27 266 0.92
28 12 0.04
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:74356378 original size:81 final size:81
Alignment explanation
Indices: 74356213--74356380 Score: 212
Period size: 81 Copynumber: 2.1 Consensus size: 81
74356203 CTGATTTGTG
* *
74356213 AAATTATTGAAGTACCCTCGACCTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTATTGAAATACCCTCGACCTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACTGAA
* **
74356278 GTACCCTCGACCTGTA
66 GTACCCTCAACCTACA
* * *
74356294 AAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGATTTAT-AGAATTACTGT
1 AAATTATTGAAATACCCTCGACCTGTAAAATTACCAAAATACCCCTGATTTATGA-AATTACTGA
** **
74356358 TTTACCCTCAATTTACA
65 AGTACCCTCAACCTACA
74356375 AAATTA
1 AAATTA
74356381 CCAAAATACC
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 73 0.99
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (81 bp):
AAATTATTGAAATACCCTCGACCTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACTGAA
GTACCCTCAACCTACA
Found at i:74356820 original size:27 final size:27
Alignment explanation
Indices: 74356376--74356810 Score: 640
Period size: 27 Copynumber: 16.2 Consensus size: 27
74356366 CAATTTACAA
* *
74356376 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74356403 AAATA-CGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74356429 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74356456 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74356483 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
74356510 AAATATTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74356537 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74356564 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
74356591 AATCATCGGAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74356618 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74356645 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74356672 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74356699 AATTACCGAAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74356725 AATTATCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74356752 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
74356779 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
74356806 AATTA
1 AATTA
74356811 TCGAGGTACC
Statistics
Matches: 375, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
26 49 0.13
27 326 0.87
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:74357308 original size:22 final size:22
Alignment explanation
Indices: 74357278--74357329 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
74357268 ATTATAGCTT
*
74357278 TGTGTCAACCT-ACATATGGCTC
1 TGTGCCAACCTGA-ATATGGCTC
* *
74357300 TGTGCCAACCTGATTATGGCTG
1 TGTGCCAACCTGAATATGGCTC
74357322 TGTGCCAA
1 TGTGCCAA
74357330 ACGTATTTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
TGTGCCAACCTGAATATGGCTC
Found at i:74357721 original size:26 final size:26
Alignment explanation
Indices: 74357684--74357792 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
74357674 TGATACAAAT
* *
74357684 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74357710 TGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74357735 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74357761 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74357787 TGATAA
1 TGATAA
74357793 GAATTTCATG
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 24 0.30
26 56 0.70
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:74357739 original size:51 final size:52
Alignment explanation
Indices: 74357684--74357792 Score: 193
Period size: 51 Copynumber: 2.1 Consensus size: 52
74357674 TGATACAAAT
74357684 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
74357735 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
74357787 TGATAA
1 TGATAA
74357793 GAATTTCATG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
51 45 0.82
52 10 0.18
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:74359276 original size:26 final size:26
Alignment explanation
Indices: 74359247--74359299 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74359237 TTTACAGTTT
74359247 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
74359273 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
74359299 T
1 T
74359300 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:74363425 original size:26 final size:25
Alignment explanation
Indices: 74363388--74363469 Score: 130
Period size: 26 Copynumber: 3.2 Consensus size: 25
74363378 TGATACAAAT
*
74363388 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
74363414 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
74363440 TGATAATGGGTTAGGTAAAT-TTCA
1 TGATAATGGGTTAGGTAAATGTTCA
74363464 TGATAA
1 TGATAA
74363470 GAATTTCATG
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
24 10 0.19
26 42 0.78
27 2 0.04
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:74364975 original size:25 final size:26
Alignment explanation
Indices: 74364947--74364998 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
74364937 TTTACAGTTT
74364947 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
74364972 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
74364998 T
1 T
74364999 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:74365506 original size:18 final size:19
Alignment explanation
Indices: 74365476--74365514 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
74365466 CCCTTATTTT
74365476 CATCCACCCAGGAAATCCC
1 CATCCACCCAGGAAATCCC
74365495 CATCCA-CCAGGAAATCCC
1 CATCCACCCAGGAAATCCC
74365513 CA
1 CA
74365515 ACCATAGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.33, C:0.46, G:0.10, T:0.10
Consensus pattern (19 bp):
CATCCACCCAGGAAATCCC
Found at i:74368578 original size:24 final size:25
Alignment explanation
Indices: 74368522--74368627 Score: 171
Period size: 24 Copynumber: 4.2 Consensus size: 25
74368512 TGATACAAAT
74368522 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
74368548 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
74368572 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
74368596 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
74368622 TGATAA
1 TGATAA
74368628 GAATTTCATG
Statistics
Matches: 78, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
24 33 0.42
25 28 0.36
26 17 0.22
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:74368585 original size:49 final size:51
Alignment explanation
Indices: 74368522--74368627 Score: 182
Period size: 49 Copynumber: 2.1 Consensus size: 51
74368512 TGATACAAAT
74368522 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAATGGGTTAGGTAAATGTTTCA
74368572 TGATAAT-GGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
74368622 TGATAA
1 TGATAA
74368628 GAATTTCATG
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
48 9 0.17
49 28 0.52
50 17 0.31
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:74370106 original size:26 final size:26
Alignment explanation
Indices: 74370077--74370129 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74370067 TTTACAGTTT
74370077 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
74370103 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
74370129 T
1 T
74370130 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:74374265 original size:26 final size:26
Alignment explanation
Indices: 74374208--74374290 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
74374198 TGATACAAAT
*
74374208 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74374233 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74374259 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
74374285 TGATAA
1 TGATAA
74374291 GAATTTCATG
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
25 20 0.36
26 36 0.64
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:74375794 original size:26 final size:26
Alignment explanation
Indices: 74375765--74375817 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74375755 TTTACAGTTT
74375765 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
74375791 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
74375817 T
1 T
74375818 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:74378170 original size:40 final size:39
Alignment explanation
Indices: 74378005--74378178 Score: 127
Period size: 40 Copynumber: 4.4 Consensus size: 39
74377995 AAATTGAATG
* * *
74378005 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
74378045 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* ** * * *
74378085 ACATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
74378125 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
*
74378164 GATATCCGGGTTAAG
1 -ATATCCGGGCTAAG
74378179 TCCTGTAGGC
Statistics
Matches: 103, Mismatches: 26, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 94 0.91
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:74378171 original size:80 final size:81
Alignment explanation
Indices: 74378003--74378178 Score: 189
Period size: 80 Copynumber: 2.2 Consensus size: 81
74377993 AGAAATTGAA
* *
74378003 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAACCGGGTTAAGACCCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATAACCGGGCTAAGACCCGAAGG
* * *
74378068 CAATTGTGCTAGTGGC
66 CAATTGTGCAAATCGC
* * ** * *
74378084 T-ACATCCGGGCTAAGACCCGAAGGC-ATTCATGC-GAGTCATTCTATCCGGGCTAAGACCCGAA
1 TGATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATAACCGGGCTAAGACCCGAA
*
74378146 GGCATTTGTGCAAATCG-
64 GGCAATTGTGCAAATCGC
*
74378163 TGATATCCGGGTTAAG
1 TGATATCCGGGCTAAG
74378179 TCCTGTAGGC
Statistics
Matches: 78, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
79 5 0.06
80 72 0.92
81 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (81 bp):
TGATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATAACCGGGCTAAGACCCGAAGG
CAATTGTGCAAATCGC
Found at i:74380345 original size:27 final size:27
Alignment explanation
Indices: 74380315--74380416 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
74380305 TTTCTGTTAA
* *
74380315 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
74380342 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
74380369 GTGGCTCTGTCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* ** *
74380396 GTGACCCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
74380417 ATAACTAAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:74380410 original size:54 final size:53
Alignment explanation
Indices: 74380315--74380416 Score: 123
Period size: 54 Copynumber: 1.9 Consensus size: 53
74380305 TTTCTGTTAA
* * * * *
74380315 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACCATGCCAC-AATATCTGTTCTG
* * *
74380369 GTGGCTCTGTCACAATATCTGTATCTGGTGACCCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACCATGCCACAATATCTG
74380417 ATAACTAAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 8 0.20
54 32 0.80
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACCATGCCACAATATCTGTTCTG
Found at i:74380591 original size:6 final size:6
Alignment explanation
Indices: 74380553--74380678 Score: 89
Period size: 6 Copynumber: 20.3 Consensus size: 6
74380543 TTGCATTCAT
* * *
74380553 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
74380603 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTA ATTCTG -TCACCTA ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
74380653 ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
74380679 AATGTTTCTT
Statistics
Matches: 94, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
5 6 0.06
6 71 0.76
7 14 0.15
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:74380599 original size:31 final size:31
Alignment explanation
Indices: 74380553--74380632 Score: 142
Period size: 31 Copynumber: 2.5 Consensus size: 31
74380543 TTGCATTCAT
74380553 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
74380585 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
74380616 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
74380633 AATTCTGTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 40 0.85
32 7 0.15
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:74380617 original size:37 final size:37
Alignment explanation
Indices: 74380576--74380676 Score: 139
Period size: 37 Copynumber: 2.7 Consensus size: 37
74380566 ATTCTGTTAC
* * * * *
74380576 CTGATACTGATTCTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATA
*
74380613 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATA
*
74380650 CTGATTCTGATTCTGATTCTAGTTCTG
1 CTGATTCTGATTCTGATTCTAATTCTG
74380677 ATAATGTTTC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATA
Found at i:74383995 original size:20 final size:20
Alignment explanation
Indices: 74383970--74384007 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74383960 GTTTATTCGC
*
74383970 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
74383990 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
74384008 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:74385675 original size:27 final size:27
Alignment explanation
Indices: 74385644--74385732 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
74385634 TAGAACACGA
*
74385644 AATTACCCTTAAAGAGCAAAATTACCG
1 AATTACCCCTAAAGAGCAAAATTACCG
74385671 AATTACCCCT-AAGAGCAAAATTACCG
1 AATTACCCCTAAAGAGCAAAATTACCG
*
74385697 AAATTACCCCTAAGGAGCAAAATTACC-
1 -AATTACCCCTAAAGAGCAAAATTACCG
74385724 AATATACCC
1 AAT-TACCC
74385733 TAGGGTTTAA
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
26 19 0.33
27 24 0.42
28 14 0.25
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (27 bp):
AATTACCCCTAAAGAGCAAAATTACCG
Found at i:74385723 original size:28 final size:27
Alignment explanation
Indices: 74385641--74385723 Score: 132
Period size: 27 Copynumber: 3.0 Consensus size: 27
74385631 ACGTAGAACA
*
74385641 CGAAATTACCCTTAAAGAGCAAAATTAC
1 CGAAATTACCCCT-AAGAGCAAAATTAC
74385669 CG-AATTACCCCTAAGAGCAAAATTAC
1 CGAAATTACCCCTAAGAGCAAAATTAC
74385695 CGAAATTACCCCTAAGGAGCAAAATTAC
1 CGAAATTACCCCTAA-GAGCAAAATTAC
74385723 C
1 C
74385724 AATATACCCT
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 16 0.31
27 21 0.40
28 15 0.29
ACGTcount: A:0.43, C:0.25, G:0.12, T:0.19
Consensus pattern (27 bp):
CGAAATTACCCCTAAGAGCAAAATTAC
Found at i:74391967 original size:20 final size:20
Alignment explanation
Indices: 74391942--74391979 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74391932 GTTTATTCGC
*
74391942 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
74391962 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
74391980 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:74393671 original size:28 final size:27
Alignment explanation
Indices: 74393612--74393704 Score: 143
Period size: 27 Copynumber: 3.4 Consensus size: 27
74393602 TAGAACACGA
*
74393612 AATTACCCTTAAAGAGCAAAATTACCG
1 AATTACCCCTAAAGAGCAAAATTACCG
74393639 AATTACCCCTAAAGAGCAAAATTACCG
1 AATTACCCCTAAAGAGCAAAATTACCG
*
74393666 AAATTACCCCTAAGGAGCAAAATTACC-
1 -AATTACCCCTAAAGAGCAAAATTACCG
74393693 AATATACCCCTA
1 AAT-TACCCCTA
74393705 GGGTTTAAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
26 3 0.05
27 34 0.55
28 25 0.40
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (27 bp):
AATTACCCCTAAAGAGCAAAATTACCG
Found at i:74397736 original size:40 final size:39
Alignment explanation
Indices: 74397691--74397898 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
74397681 CGGAATACAA
*
74397691 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74397731 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74397771 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74397811 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
74397851 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
74397891 CCGGATAT
1 CCGGATAT
74397899 CATTCAATTG
Statistics
Matches: 143, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 142 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74397831 original size:80 final size:81
Alignment explanation
Indices: 74397691--74397896 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 81
74397681 CGGAATACAA
* * *
74397691 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
74397755 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
74397771 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
74397834 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * * * *
74397851 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
74397897 ATCATTCAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 105 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:74405799 original size:40 final size:39
Alignment explanation
Indices: 74405754--74405959 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
74405744 CGGAATACAA
*
74405754 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74405794 CCGGATAGAACGACTTGCA-AAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74405833 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74405873 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
74405913 CCGGATATAATTACTAGCACAAATGTCTTC-GGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
74405952 CCGGATAT
1 CCGGATAT
74405960 CATTCAATTG
Statistics
Matches: 140, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 50 0.36
40 90 0.64
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74410059 original size:17 final size:17
Alignment explanation
Indices: 74410037--74410070 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
74410027 TGGTAAGACT
74410037 TTTGAGGACGAAAGTCC
1 TTTGAGGACGAAAGTCC
74410054 TTTGAGGACGAAAGTCC
1 TTTGAGGACGAAAGTCC
74410071 CTAAGGGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (17 bp):
TTTGAGGACGAAAGTCC
Found at i:74412436 original size:13 final size:13
Alignment explanation
Indices: 74412418--74412442 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74412408 GTTCTCTCCC
74412418 ATGGTCGTGTGTT
1 ATGGTCGTGTGTT
74412431 ATGGTCGTGTGT
1 ATGGTCGTGTGT
74412443 CCCCTGCACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.40, T:0.44
Consensus pattern (13 bp):
ATGGTCGTGTGTT
Found at i:74414000 original size:40 final size:40
Alignment explanation
Indices: 74413951--74414158 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
74413941 TCTTCGGAAT
* * *
74413951 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
74413990 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
74414030 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
74414070 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
74414110 TTAGCCCGGATATAATCATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
74414150 TTAGCCCGG
1 TTAGCCCGG
74414159 GTATCATTCA
Statistics
Matches: 145, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 141 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:74422072 original size:40 final size:40
Alignment explanation
Indices: 74422023--74422230 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
74422013 TCTTCGGAAT
* * *
74422023 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
74422062 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
74422102 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
74422142 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
74422182 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
74422222 TTAGCCCGG
1 TTAGCCCGG
74422231 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:74431082 original size:23 final size:24
Alignment explanation
Indices: 74431047--74431196 Score: 229
Period size: 23 Copynumber: 6.4 Consensus size: 24
74431037 CTGGAAGCCT
*
74431047 AGCCTCTTTTAATAACTGGGGC-GA
1 AGCC-CTTTTAATAACTGGGGCATA
74431071 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74431095 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
74431118 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
74431143 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74431166 AGCCC-TTTAATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74431188 AGCCCTTTT
1 AGCCCTTTT
74431197 CACTTCCTCC
Statistics
Matches: 119, Mismatches: 3, Indels: 9
0.91 0.02 0.07
Matches are distributed among these distances:
22 12 0.10
23 73 0.61
24 14 0.12
25 20 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:74431133 original size:71 final size:70
Alignment explanation
Indices: 74431058--74431195 Score: 242
Period size: 71 Copynumber: 2.0 Consensus size: 70
74431048 GCCTCTTTTA
74431058 ATAACTGGGGC-GAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCAGAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTAATAACT-GGGCATAAGCC
74431122 CTTTATC
64 CTTTATC
*
74431129 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAGCCCT
1 ATAACTGGGGCAGAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAGCCCT
74431194 TT
66 TT
74431196 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
70 15 0.23
71 44 0.68
72 6 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (70 bp):
ATAACTGGGGCAGAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAGCCCT
TTATC
Found at i:74431134 original size:48 final size:47
Alignment explanation
Indices: 74431054--74431195 Score: 229
Period size: 48 Copynumber: 3.1 Consensus size: 47
74431044 CCTAGCCTCT
*
74431054 TTTAATAACTGGGGC-GAAGCCCTTT-TAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAT-ATAACTGGGGCATAAGCCC
74431100 TTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAT-ATAACTGGGGCATAAGCCC
74431148 TTTAATAACTGGGGCATAAGCCCTTTA-ATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTATATAACTGGGGCATAAGCCC
74431193 TTT
1 TTT
74431196 TCACTTCCTC
Statistics
Matches: 92, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
45 15 0.16
46 21 0.23
47 9 0.10
48 47 0.51
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTATATAACTGGGGCATAAGCCC
Found at i:74431268 original size:20 final size:20
Alignment explanation
Indices: 74431243--74431309 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
74431233 TTATGATTAC
74431243 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74431263 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74431283 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74431303 ACCATGT
1 ATCATGT
74431310 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74431274 original size:11 final size:11
Alignment explanation
Indices: 74431243--74431298 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74431233 TTATGATTAC
74431243 ATCATGTGCAT
1 ATCATGTGCAT
*
74431254 ATCA--TACAT
1 ATCATGTGCAT
74431263 ATCATGTGCAT
1 ATCATGTGCAT
*
74431274 ATCA--TACAT
1 ATCATGTGCAT
*
74431283 GTCATGTGCAT
1 ATCATGTGCAT
74431294 ATCAT
1 ATCAT
74431299 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74431373 original size:25 final size:25
Alignment explanation
Indices: 74431345--74431392 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74431335 ATACATAAAC
* * *
74431345 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74431370 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74431393 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74434684 original size:80 final size:80
Alignment explanation
Indices: 74434600--74434748 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
74434590 TATGGTAACC
* * * *
74434600 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
74434664 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
74434680 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
74434745 CCGG
66 CCGG
74434749 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:74434690 original size:40 final size:38
Alignment explanation
Indices: 74434641--74434748 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
74434631 ATCACGATTT
*
74434641 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
74434681 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
74434721 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
74434749 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:74442547 original size:23 final size:23
Alignment explanation
Indices: 74442493--74442659 Score: 264
Period size: 23 Copynumber: 7.1 Consensus size: 23
74442483 CCTAGCCTCT
*
74442493 TTTAATAACTGGGGC-GAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74442515 TTTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
74442540 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74442563 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
74442588 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
74442611 TTTAATAACTGGGGCATAAACCC
1 TTTAATAACTGGGGCATAAGCCC
*
74442634 TTTAATAACTGGGGCATAATCCC
1 TTTAATAACTGGGGCATAAGCCC
74442657 TTT
1 TTT
74442660 TTCACTTCCT
Statistics
Matches: 137, Mismatches: 3, Indels: 7
0.93 0.02 0.05
Matches are distributed among these distances:
23 93 0.68
24 15 0.11
25 29 0.21
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:74442574 original size:48 final size:47
Alignment explanation
Indices: 74442470--74442659 Score: 269
Period size: 48 Copynumber: 4.0 Consensus size: 47
74442460 CTGCTTTATC
* *
74442470 ATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGC-GAAGCCCTTT
1 ATATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTT
*
74442518 TTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
74442566 ATCATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
* *
74442614 A-ATAACTGGGGCATAAACCCTTTAATAACTGGGGCATAATCCCTTT
1 ATATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
74442660 TTCACTTCCT
Statistics
Matches: 132, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
46 43 0.33
47 15 0.11
48 62 0.47
49 12 0.09
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
ATATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
Found at i:74442606 original size:71 final size:70
Alignment explanation
Indices: 74442493--74442659 Score: 259
Period size: 71 Copynumber: 2.4 Consensus size: 70
74442483 CCTAGCCTCT
*
74442493 TTTA-ATAACTGGGGC-GAAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
1 TTTATATAACTGGGGCATAAGCCC--TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
74442556 TAAGCCC
64 TAAGCCC
74442563 TTTATCATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
1 TTTAT-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
*
74442628 AAACCC
65 AAGCCC
*
74442634 TTTA-ATAACTGGGGCATAATCCCTTT
1 TTTATATAACTGGGGCATAAGCCCTTT
74442660 TTCACTTCCT
Statistics
Matches: 91, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
69 21 0.23
70 4 0.04
71 49 0.54
72 11 0.12
73 6 0.07
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (70 bp):
TTTATATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
AGCCC
Found at i:74442735 original size:20 final size:20
Alignment explanation
Indices: 74442710--74442748 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
74442700 TATGATTACA
74442710 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
74442730 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
74442749 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:74442754 original size:20 final size:20
Alignment explanation
Indices: 74442711--74442755 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
74442701 ATGATTACAT
**
74442711 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
74442731 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
74442751 CATGT
1 CATGT
74442756 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:74442824 original size:25 final size:25
Alignment explanation
Indices: 74442792--74442839 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74442782 ATACATAAAC
* * *
74442792 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74442817 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74442840 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74446554 original size:42 final size:43
Alignment explanation
Indices: 74446440--74446608 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 43
74446430 CATAGGATTC
* * ** * *
74446440 CGATATGTGATTTCGTGTAAGACCACATTTGGGACGTTGGCAT
1 CGATATGAGATTACGTGTAAGACCATGTCTGGGACATTGGCAT
* * *
74446483 CAATTTGTGATTTA-GTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATGAGA-TTACGTGTAAGACCATGTCTGGGACATTGGCAT
* * *
74446526 CGTATATGAG-TT-CGTGTAAGACCCTGTCTGGGATAGTGGCAT
1 CG-ATATGAGATTACGTGTAAGACCATGTCTGGGACATTGGCAT
* * *
74446568 CGATATGTGATTACATGTAAGACCATGTCTGGGACGTTGGC
1 CGATATGAGATTACGTGTAAGACCATGTCTGGGACATTGGC
74446609 GTTGTACGAG
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
41 6 0.06
42 32 0.31
43 57 0.56
44 7 0.07
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (43 bp):
CGATATGAGATTACGTGTAAGACCATGTCTGGGACATTGGCAT
Found at i:74451172 original size:37 final size:37
Alignment explanation
Indices: 74451128--74451201 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
74451118 TCATGAGATA
74451128 GAATTTTTATTATAGACTTAATTATATAATGCATGAT
1 GAATTTTTATTATAGACTTAATTATATAATGCATGAT
74451165 GAATTTTTATTATAGACTTAATTATATAATGCATGAT
1 GAATTTTTATTATAGACTTAATTATATAATGCATGAT
74451202 AATGAACTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (37 bp):
GAATTTTTATTATAGACTTAATTATATAATGCATGAT
Found at i:74452192 original size:26 final size:27
Alignment explanation
Indices: 74452163--74452225 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
74452153 TCTCATCCTT
* *
74452163 ATTTTACCCCCAG-AAAAAATTTCACG
1 ATTTTACCCCCAGTAAAAAATTTAACA
* **
74452189 ATTTTACCCTCAGTAAAATTTTTAACA
1 ATTTTACCCCCAGTAAAAAATTTAACA
74452216 ATTTTACCCC
1 ATTTTACCCC
74452226 TGGTAAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 12 0.40
27 18 0.60
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (27 bp):
ATTTTACCCCCAGTAAAAAATTTAACA
Found at i:74454413 original size:46 final size:46
Alignment explanation
Indices: 74454353--74454572 Score: 260
Period size: 46 Copynumber: 5.0 Consensus size: 46
74454343 TTTGACATGA
* * * * *
74454353 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
**
74454399 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
74454445 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
74454491 TGTCATGGTATCTTTCAACCATGGTCTTA--CA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
74454529 TTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
74454573 AGAGCACACT
Statistics
Matches: 150, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
38 31 0.21
39 1 0.01
40 2 0.01
41 1 0.01
43 1 0.01
44 2 0.01
45 5 0.03
46 107 0.71
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:74460669 original size:40 final size:40
Alignment explanation
Indices: 74460612--74460802 Score: 222
Period size: 40 Copynumber: 4.8 Consensus size: 40
74460602 ATTGAATGAT
* * ** * *
74460612 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAA
* * * * *
74460652 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTAATTAA
* **
74460692 ATCCGGGCTGAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAA
**
74460732 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAA
74460772 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
74460803 CGTGGTTATA
Statistics
Matches: 133, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 3 0.02
40 127 0.95
41 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAA
Found at i:74462853 original size:46 final size:46
Alignment explanation
Indices: 74462793--74463103 Score: 428
Period size: 46 Copynumber: 7.0 Consensus size: 46
74462783 TTTGACATGA
* * * * *
74462793 TGCCATAGTGTCTTTCAACTATGGTCTTACTA-ATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-ACA-TTTCATATCAGGT
*** *
74462839 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
74462885 TGCCATGGTATCTTTCAACCATGGT-TTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
74462930 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
74462976 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
74463022 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
74463060 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
74463104 AGAGCACACT
Statistics
Matches: 240, Mismatches: 14, Indels: 22
0.87 0.05 0.08
Matches are distributed among these distances:
38 32 0.13
39 1 0.00
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 46 0.19
46 153 0.64
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:74462941 original size:91 final size:91
Alignment explanation
Indices: 74462793--74463103 Score: 417
Period size: 91 Copynumber: 3.5 Consensus size: 91
74462783 TTTGACATGA
* * * * *
74462793 TGCCATAGTGTCTTTCAACTATGGTCTTACTA-ATTTTC-TGTCATGTTGCCATGGTATCTTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-ACA-TTTCATATCAGGTTGCCATGGTATCTTTCA
*
74462856 ACCATGGTCTTGTTCATTTCATATCACGT
64 ACCATGGTCTT-TTCATTTCATATCAGGT
74462885 TGCCATGGTATCTTTCAACCATGGT-TTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
** *
74462949 CATGGTCTTACACATTTCATATCAGGC
66 CATGGTCTT-TTCATTTCATATCAGGT
*
74462976 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
74463041 CATGGTC--TT-A---CACA-CAGGT
66 CATGGTCTTTTCATTTCATATCAGGT
74463060 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
74463104 AGAGCACACT
Statistics
Matches: 201, Mismatches: 15, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
84 48 0.24
85 3 0.01
88 1 0.00
90 5 0.02
91 77 0.38
92 67 0.33
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTTTCATTTCATATCAGGT
Found at i:74463039 original size:137 final size:130
Alignment explanation
Indices: 74462793--74463103 Score: 412
Period size: 137 Copynumber: 2.3 Consensus size: 130
74462783 TTTGACATGA
* * * * * *
74462793 TGCCATAGTGTCTTTCAACTATGGTCTTACTA-ATTTTC-TGTCATGTTGCCATGGTATCTTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-ACA-TTTCATATCAGGCTGCCATGGTATCTTTCA
*** *
74462856 ACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGT-TTACACATTT
64 ACCATGGTCTTACACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTT--ACA---
74462920 CATATCAGGT
124 C--A-CAGGT
74462930 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
*
74462995 CATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
66 CATGGTCTTACACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
74463060 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
74463104 AGAGCACACT
Statistics
Matches: 160, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
130 49 0.31
131 1 0.01
133 1 0.01
136 8 0.05
137 99 0.62
138 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (130 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
Found at i:74463073 original size:38 final size:38
Alignment explanation
Indices: 74463017--74463092 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
74463007 CATTTCATAT
74463017 CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
74463055 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACA
74463093 TTTCATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (38 bp):
CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:74472792 original size:39 final size:40
Alignment explanation
Indices: 74472736--74472825 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 40
74472726 CTACAAGTAT
* * *
74472736 TTTTTTTGTTAATAATA-TGCTTAATATAAAATTTTGATA
1 TTTTATTGTTAAAAATATTACTTAATATAAAATTTTGATA
* *
74472775 TTTTATTGTTAAAAATATTTATTTAATTTAAAATTTTGATA
1 TTTTATTGTTAAAAATA-TTACTTAATATAAAATTTTGATA
74472816 TTGTTATTGT
1 TT-TTATTGT
74472826 CAATAACGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 15 0.35
41 21 0.49
42 7 0.16
ACGTcount: A:0.34, C:0.01, G:0.08, T:0.57
Consensus pattern (40 bp):
TTTTATTGTTAAAAATATTACTTAATATAAAATTTTGATA
Found at i:74472843 original size:41 final size:41
Alignment explanation
Indices: 74472757--74472851 Score: 111
Period size: 41 Copynumber: 2.3 Consensus size: 41
74472747 ATAATATGCT
* * * *
74472757 TAATATAAAATTTTGATATTTTATTGTTAAAAATATTTATT
1 TAATTTAAAATTTTGATATTTTATTGTCAAAAATAGTTATC
* *
74472798 TAATTTAAAATTTTGATATTGTTATTGTCAATAA-CGTTATC
1 TAATTTAAAATTTTGATATT-TTATTGTCAAAAATAGTTATC
*
74472839 TAATTTAACATTT
1 TAATTTAAAATTT
74472852 GTGGGATAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
41 35 0.76
42 11 0.24
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (41 bp):
TAATTTAAAATTTTGATATTTTATTGTCAAAAATAGTTATC
Found at i:74475097 original size:24 final size:24
Alignment explanation
Indices: 74475065--74475118 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
74475055 TTGGAATTTA
*
74475065 TTCTTCATTTCGAACCTATAGGGG
1 TTCTTCATTTCGAACCTACAGGGG
74475089 TTCTTCATTTCGAACCTACAGGGG
1 TTCTTCATTTCGAACCTACAGGGG
74475113 TT-TTCA
1 TTCTTCA
74475119 CACAGTCGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (24 bp):
TTCTTCATTTCGAACCTACAGGGG
Found at i:74481998 original size:42 final size:42
Alignment explanation
Indices: 74481951--74482064 Score: 129
Period size: 43 Copynumber: 2.7 Consensus size: 42
74481941 ACTAAGATTA
*
74481951 CGTGTAAGACCATATCTAGGATATGGCATCGATAAGAGACTT
1 CGTGTAAGACCATATCTAGGATATGGCATCAATAAGAGACTT
* * * * * * *
74481993 CGTGTAAGACCATAGCTGGGCTATTGCCATTAATATGAGATTT
1 CGTGTAAGACCATATCTAGGATA-TGGCATCAATAAGAGACTT
* *
74482036 CATGTATGACCATATCTAGGATATGGCAT
1 CGTGTAAGACCATATCTAGGATATGGCAT
74482065 TGGTATGGTA
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATATCTAGGATATGGCATCAATAAGAGACTT
Found at i:74486634 original size:16 final size:16
Alignment explanation
Indices: 74486613--74486646 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
74486603 CTGACACAAA
74486613 TGTGTATTTACTTTGG
1 TGTGTATTTACTTTGG
74486629 TGTGTATTTACTTTGG
1 TGTGTATTTACTTTGG
74486645 TG
1 TG
74486647 GTTAAGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.06, G:0.26, T:0.56
Consensus pattern (16 bp):
TGTGTATTTACTTTGG
Found at i:74489347 original size:21 final size:20
Alignment explanation
Indices: 74489319--74489368 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
74489309 TTTTTTAAAA
74489319 TATA-AAATTCATAAA-ATAT
1 TATAGAAATTCATAAATA-AT
*
74489338 TAATAGAAATTTATAAATAAT
1 T-ATAGAAATTCATAAATAAT
74489359 TATAGAAATT
1 TATAGAAATT
74489369 ATAGAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 12 0.44
21 13 0.48
22 1 0.04
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (20 bp):
TATAGAAATTCATAAATAAT
Found at i:74489409 original size:72 final size:72
Alignment explanation
Indices: 74489331--74489492 Score: 174
Period size: 72 Copynumber: 2.3 Consensus size: 72
74489321 TAAAATTCAT
* * * *
74489331 AAAATATTAATAGAAATTTAT-AAATAATTAT-AGAAATTATAGAAA-ATTTTTAAATGTTATAA
1 AAAATA-TAATA-AAATTTATAAAAAAATTATAAAAAAGTATAGAAAGA-TCTTAAATGTTATAA
74489393 AAAAATTAGA
63 AAAAATTAGA
74489403 AAAATATAGA-AAAA-TTATAAAAAAATTATAAAAAAAGTATAGAAAGATCTTAAATGTTATAAA
1 AAAATATA-ATAAAATTTATAAAAAAATTAT-AAAAAAGTATAGAAAGATCTTAAATGTTATAAA
* *
74489466 AAACTTATA
64 AAAATTAGA
*
74489475 ATAATAT-ATAAAATTTAT
1 AAAATATAATAAAATTTAT
74489493 TCAAATTATT
Statistics
Matches: 76, Mismatches: 7, Indels: 14
0.78 0.07 0.14
Matches are distributed among these distances:
69 4 0.05
70 13 0.17
71 7 0.09
72 51 0.67
73 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.33
Consensus pattern (72 bp):
AAAATATAATAAAATTTATAAAAAAATTATAAAAAAGTATAGAAAGATCTTAAATGTTATAAAAA
AATTAGA
Found at i:74489410 original size:19 final size:19
Alignment explanation
Indices: 74489388--74489425 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
74489378 TTTTAAATGT
74489388 TATAAAAAAATTAGAAAAA
1 TATAAAAAAATTAGAAAAA
* *
74489407 TATAGAAAAATTATAAAAA
1 TATAAAAAAATTAGAAAAA
74489426 AATTATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (19 bp):
TATAAAAAAATTAGAAAAA
Found at i:74489416 original size:11 final size:10
Alignment explanation
Indices: 74489388--74489443 Score: 60
Period size: 11 Copynumber: 5.4 Consensus size: 10
74489378 TTTTAAATGT
74489388 TATAAAAAAA
1 TATAAAAAAA
*
74489398 T-TAGAAAAA
1 TATAAAAAAA
*
74489407 TATAGAAAAAT
1 TATA-AAAAAA
74489418 TATAAAAAAA
1 TATAAAAAAA
74489428 TTATAAAAAAA
1 -TATAAAAAAA
74489439 GTATA
1 -TATA
74489444 GAAAGATCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
9 8 0.21
10 8 0.21
11 22 0.58
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (10 bp):
TATAAAAAAA
Found at i:74489435 original size:9 final size:9
Alignment explanation
Indices: 74489322--74489552 Score: 81
Period size: 10 Copynumber: 23.3 Consensus size: 9
74489312 TTTAAAATAT
74489322 AAAATTCATA
1 AAAATT-ATA
74489332 AAATATTAATA
1 AAA-ATT-ATA
*
74489343 GAAATTTATA
1 -AAAATTATA
74489353 AATAATTATA
1 AA-AATTATA
*
74489363 GAAATTATA
1 AAAATTATA
*
74489372 GAAAATTTTTA
1 -AAAA-TTATA
**
74489383 AATGTTATAAA
1 AAAATTAT--A
*
74489394 AAAATTAGA
1 AAAATTATA
*
74489403 AAAATATAGA
1 AAAAT-TATA
74489413 AAAATTATAAA
1 AAAATTAT--A
74489424 AAAATTATAAA
1 AAAATTAT--A
*
74489435 AAAAGTATA
1 AAAATTATA
74489444 GAAAGATCT-TA
1 -AAA-AT-TATA
**
74489455 AATGTTATAA
1 AAAATTAT-A
74489465 AAAACTTATA
1 AAAA-TTATA
*
74489475 ATAATATATA
1 AAAAT-TATA
* *
74489485 AAATTTATT
1 AAAATTATA
*
74489494 CAAATTATTCA
1 AAAATTA-T-A
*
74489505 AATATTATA
1 AAAATTATA
74489514 AAAA-TATA
1 AAAATTATA
*
74489522 AAAATTAAA
1 AAAATTATA
74489531 GAAAAGTTATA
1 -AAAA-TTATA
74489542 AAAATTA-A
1 AAAATTATA
74489550 AAA
1 AAA
74489553 TTACTATACA
Statistics
Matches: 168, Mismatches: 31, Indels: 46
0.69 0.13 0.19
Matches are distributed among these distances:
8 13 0.08
9 42 0.25
10 56 0.33
11 53 0.32
12 4 0.02
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:74493247 original size:39 final size:39
Alignment explanation
Indices: 74493082--74493244 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
74493072 ATTTGATGTG
* *
74493082 TATCTGGACTTAGGGTTCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
74493121 TTTCCGGACTTAGGGTCCGCAGGCTATGTTCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
74493160 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
74493199 TATCCGGGCTTACGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
74493238 TGTCCGG
1 TATCCGG
74493245 GCTAAAGTCC
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:74493271 original size:78 final size:78
Alignment explanation
Indices: 74493099--74493283 Score: 205
Period size: 78 Copynumber: 2.4 Consensus size: 78
74493089 ACTTAGGGTT
** * * * * * *
74493099 CGCAGGCTATGTGCTGGAATTATTTCCGGACTTAGGGTCCGCAGGCTATGTTCTGGAATTATATC
1 CGCAGGCTATAAGCTGGAATTATATCCGGGCTTACGGTCCGCAGGCTACGTGCTGGAAATATATC
*
74493164 CGGACTTAAGGTC
66 CGGACTTAAAGTC
** *
74493177 CGCAGGCTATGTGCTGGAATTATATCCGGGCTTACGGTCCGCAGGCTACGTGCTGGAAATATGTC
1 CGCAGGCTATAAGCTGGAATTATATCCGGGCTTACGGTCCGCAGGCTACGTGCTGGAAATATATC
*
74493242 CGGGC-TAAAGTCC
66 CGGACTTAAAGT-C
*
74493255 CGCAGGCT-TCAAGCTGGTATTATA-CCGGG
1 CGCAGGCTAT-AAGCTGGAATTATATCCGGG
74493284 TTTAAATTCC
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
77 11 0.12
78 82 0.88
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (78 bp):
CGCAGGCTATAAGCTGGAATTATATCCGGGCTTACGGTCCGCAGGCTACGTGCTGGAAATATATC
CGGACTTAAAGTC
Done.