Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 240 of 438
Found at i:74493309 original size:38 final size:38
Alignment explanation
Indices: 74493099--74493314 Score: 154
Period size: 39 Copynumber: 5.6 Consensus size: 38
74493089 ACTTAGGGTT
* * **
74493099 CGCAGGCTATGTGCTGGAATTATTTCCGGACTTAGGGT-C
1 CGCAGGCTATGTGCTGGAATTA-TACCGG-GTTAAAGTCC
* * *
74493138 CGCAGGCTATGTTCTGGAATTATATCCGGACTTAAGGT-C
1 CGCAGGCTATGTGCTGGAATTATA-CCGG-GTTAAAGTCC
**
74493177 CGCAGGCTATGTGCTGGAATTATATCCGGGCTTACGGT-C
1 CGCAGGCTATGTGCTGGAATTATA-CCGGG-TTAAAGTCC
* * * *
74493216 CGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTCC
1 CGCAGGCTATGTGCTGGAATTAT-ACCGGGTTAAAGTCC
** * *
74493255 CGCAGGCT-TCAAGCTGGTATTATACCGGGTTTAAATTCC
1 CGCAGGCTAT-GTGCTGGAATTATACCGGG-TTAAAGTCC
74493294 CGCAGGCT-TGTGCTGGTAATT
1 CGCAGGCTATGTGCTGG-AATT
74493315 GGTTTCAAGT
Statistics
Matches: 147, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 15 0.10
39 132 0.90
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (38 bp):
CGCAGGCTATGTGCTGGAATTATACCGGGTTAAAGTCC
Found at i:74499174 original size:20 final size:20
Alignment explanation
Indices: 74499146--74499186 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
74499136 ATATATCTTG
*
74499146 ATTTTATTTGATTCTAATCA
1 ATTTGATTTGATTCTAATCA
*
74499166 ATTTGATTTGATTTTAATCA
1 ATTTGATTTGATTCTAATCA
74499186 A
1 A
74499187 ATTAATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (20 bp):
ATTTGATTTGATTCTAATCA
Found at i:74499194 original size:20 final size:20
Alignment explanation
Indices: 74499151--74499194 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
74499141 TCTTGATTTT
* *
74499151 ATTTGATTCTAATCAATTTG
1 ATTTGATTCTAATCAAATTA
*
74499171 ATTTGATTTTAATCAAATTA
1 ATTTGATTCTAATCAAATTA
74499191 ATTT
1 ATTT
74499195 AATTGCCCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (20 bp):
ATTTGATTCTAATCAAATTA
Found at i:74506735 original size:20 final size:21
Alignment explanation
Indices: 74506705--74506743 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
74506695 TCGAGTCAAT
74506705 AAAGAAAAAGAAAACAAAGCA
1 AAAGAAAAAGAAAACAAAGCA
*
74506726 AAAG-AAAAGAAAAGAAAG
1 AAAGAAAAAGAAAACAAAG
74506744 GGGAGGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.77, C:0.05, G:0.18, T:0.00
Consensus pattern (21 bp):
AAAGAAAAAGAAAACAAAGCA
Found at i:74506773 original size:20 final size:20
Alignment explanation
Indices: 74506729--74506773 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
74506719 CAAAGCAAAA
* *
74506729 GAAAAGAAAAGAAAGGGGAG
1 GAAATGAAAAGAAAGAGGAG
*
74506749 GAAATGAAAGGAAAGAGGAG
1 GAAATGAAAAGAAAGAGGAG
74506769 GAAAT
1 GAAAT
74506774 TATATTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.38, T:0.04
Consensus pattern (20 bp):
GAAATGAAAAGAAAGAGGAG
Found at i:74507882 original size:2 final size:2
Alignment explanation
Indices: 74507875--74507926 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
74507865 TCAAGATACA
74507875 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74507917 AT AT AT AT AT
1 AT AT AT AT AT
74507927 GGCTATAGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74511922 original size:17 final size:17
Alignment explanation
Indices: 74511902--74511981 Score: 124
Period size: 17 Copynumber: 4.5 Consensus size: 17
74511892 AATGATATGG
74511902 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
74511919 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
74511937 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
74511954 AATCTTAGATATGATATAC
1 AATCTTAGATATG--ATAC
74511973 AATCTTAGA
1 AATCTTAGA
74511982 AGATATGATT
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
17 29 0.50
18 16 0.28
19 13 0.22
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:74511942 original size:35 final size:36
Alignment explanation
Indices: 74511893--74511981 Score: 153
Period size: 35 Copynumber: 2.5 Consensus size: 36
74511883 ATAATCTTCA
*
74511893 ATGATATGGAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
74511929 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
74511964 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
74511982 AGATATGATT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
35 34 0.68
36 16 0.32
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:74511969 original size:22 final size:20
Alignment explanation
Indices: 74511908--74511990 Score: 74
Period size: 19 Copynumber: 4.5 Consensus size: 20
74511898 ATGGAATCTT
74511908 AGATATGATACAATCTT---
1 AGATATGATACAATCTTAGA
*
74511925 AGATATGATTGCAATCTT---
1 AGATATGA-TACAATCTTAGA
74511943 AGATATGATACAATCTTAG-
1 AGATATGATACAATCTTAGA
*
74511962 ATATGAT-ATACAATCTTAGA
1 AGAT-ATGATACAATCTTAGA
74511982 AGATATGAT
1 AGATATGAT
74511991 TTTGTAATCT
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
17 16 0.29
18 16 0.29
19 17 0.30
20 7 0.12
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (20 bp):
AGATATGATACAATCTTAGA
Found at i:74512495 original size:16 final size:16
Alignment explanation
Indices: 74512457--74512527 Score: 51
Period size: 16 Copynumber: 4.6 Consensus size: 16
74512447 TTTCTAAACC
*
74512457 AATATATTTTA-TATA
1 AATATATTATATTATA
*
74512472 TAAT-TATTATCTTATA
1 -AATATATTATATTATA
*
74512488 AATATATT-TTTTAT-
1 AATATATTATATTATA
* *
74512502 TATATATTATATTTTA
1 AATATATTATATTATA
*
74512518 AATTTATTAT
1 AATATATTAT
74512528 TAAATATCAC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
14 7 0.16
15 17 0.40
16 19 0.44
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (16 bp):
AATATATTATATTATA
Found at i:74512541 original size:26 final size:26
Alignment explanation
Indices: 74512493--74512542 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
74512483 TTATAAATAT
* * * *
74512493 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
74512519 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
74512543 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:74513330 original size:34 final size:34
Alignment explanation
Indices: 74513287--74513354 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
74513277 TACGAGCAAC
74513287 TGTCTTGGAATTTCAAAGCGTTGTGTCCTAACTT
1 TGTCTTGGAATTTCAAAGCGTTGTGTCCTAACTT
74513321 TGTCTTGGAATTTCAAAGCGTTGTGTCCTAACTT
1 TGTCTTGGAATTTCAAAGCGTTGTGTCCTAACTT
74513355 ATTGGATGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (34 bp):
TGTCTTGGAATTTCAAAGCGTTGTGTCCTAACTT
Found at i:74514332 original size:34 final size:35
Alignment explanation
Indices: 74514283--74514358 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 35
74514273 GAAACTGCAT
* * *
74514283 GACTGATACTGATACTGAGATGGGCTAAGGCCCAA
1 GACTGTTACTGATACTGAAAGGGGCTAAGGCCCAA
*
74514318 -ACTGTTACTGATACTGAAAGGGGCTTAGGCCCAA
1 GACTGTTACTGATACTGAAAGGGGCTAAGGCCCAA
74514352 GACTGTT
1 GACTGTT
74514359 TGACTAGGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 30 0.83
35 6 0.17
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (35 bp):
GACTGTTACTGATACTGAAAGGGGCTAAGGCCCAA
Found at i:74515140 original size:12 final size:12
Alignment explanation
Indices: 74515123--74515179 Score: 78
Period size: 12 Copynumber: 4.8 Consensus size: 12
74515113 TTATGTGTCA
74515123 CACACGGCCTAC
1 CACACGGCCTAC
**
74515135 CACACGGCCTGG
1 CACACGGCCTAC
74515147 CACACGGCCTAC
1 CACACGGCCTAC
**
74515159 CACACGGCCTGG
1 CACACGGCCTAC
74515171 CACACGGCC
1 CACACGGCC
74515180 ATGTGGCATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.21, C:0.47, G:0.25, T:0.07
Consensus pattern (12 bp):
CACACGGCCTAC
Found at i:74515150 original size:24 final size:24
Alignment explanation
Indices: 74515123--74515179 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
74515113 TTATGTGTCA
74515123 CACACGGCCTACCACACGGCCTGG
1 CACACGGCCTACCACACGGCCTGG
74515147 CACACGGCCTACCACACGGCCTGG
1 CACACGGCCTACCACACGGCCTGG
74515171 CACACGGCC
1 CACACGGCC
74515180 ATGTGGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.21, C:0.47, G:0.25, T:0.07
Consensus pattern (24 bp):
CACACGGCCTACCACACGGCCTGG
Found at i:74517175 original size:40 final size:40
Alignment explanation
Indices: 74517109--74517252 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
74517099 AAATTGAATG
* ** *
74517109 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ***
74517148 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ** *
74517188 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCAAGAAACT
* *
74517228 CTATTCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
74517253 TTTGTGCACA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 16 0.19
40 70 0.81
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
Found at i:74517253 original size:40 final size:39
Alignment explanation
Indices: 74517147--74517260 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 39
74517137 TGCTGGAAAT
* **
74517147 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTCAC
* *
74517187 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTCAC
* *
74517227 TCTATTCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
74517261 CATGGTTATA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.05
40 59 0.92
41 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTCAC
Found at i:74519217 original size:3 final size:3
Alignment explanation
Indices: 74519209--74519243 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
74519199 ATAAAAAGAA
74519209 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
74519244 ATATTCCCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:74522840 original size:42 final size:42
Alignment explanation
Indices: 74522793--74522886 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
74522783 ATGAGTTTTC
* *
74522793 GTTTAACCCTAATGG-GTTCCAGTTTAGCTCTTTTGAGCTTCA
1 GTTTAACCCTAATGGAGTTCC-GTTCAGCTCTTATGAGCTTCA
* * * *
74522835 GTTTAACCCTTATGGATTTTCGTTCAGCTCTTATGAGCTTCC
1 GTTTAACCCTAATGGAGTTCCGTTCAGCTCTTATGAGCTTCA
*
74522877 GTTCAACCCT
1 GTTTAACCCT
74522887 TATTGGTTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 41 0.93
43 3 0.07
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.40
Consensus pattern (42 bp):
GTTTAACCCTAATGGAGTTCCGTTCAGCTCTTATGAGCTTCA
Found at i:74522888 original size:21 final size:21
Alignment explanation
Indices: 74522826--74522889 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
74522816 TTAGCTCTTT
* *
74522826 TGAGCTTCAGTTTAACCCTTA
1 TGAGCTTCCGTTCAACCCTTA
* * * *
74522847 TG-GATTTTCGTTCAGCTCTTA
1 TGAG-CTTCCGTTCAACCCTTA
74522868 TGAGCTTCCGTTCAACCCTTA
1 TGAGCTTCCGTTCAACCCTTA
74522889 T
1 T
74522890 TGGTTTCCCT
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.41
Consensus pattern (21 bp):
TGAGCTTCCGTTCAACCCTTA
Found at i:74522897 original size:21 final size:20
Alignment explanation
Indices: 74522839--74522897 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
74522829 GCTTCAGTTT
*
74522839 AACCCTTATGGATTTTCGTTC
1 AACCCTTATGG-TTTCCGTTC
* * *
74522860 AGCTCTTATGAGCTTCCGTTC
1 AACCCTTATG-GTTTCCGTTC
74522881 AACCCTTATTGGTTTCC
1 AACCCTTA-TGGTTTCC
74522898 CTTTAGCACT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 26 0.90
22 3 0.10
ACGTcount: A:0.17, C:0.27, G:0.15, T:0.41
Consensus pattern (20 bp):
AACCCTTATGGTTTCCGTTC
Found at i:74522910 original size:42 final size:42
Alignment explanation
Indices: 74522815--74522916 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 42
74522805 TGGGTTCCAG
* * * *
74522815 TTTAGCTCTTTTGAGCTTCAGTTTAACCCTTATGGATTTTCG
1 TTTAGCTCTTATGAGCTTCAGTTCAACCCTTATGGATTTCCC
* *
74522857 TTCAGCTCTTATGAGCTTCCGTTCAACCCTTATTGG-TTTCCC
1 TTTAGCTCTTATGAGCTTCAGTTCAACCCTTA-TGGATTTCCC
* *
74522899 TTTAGCACTTATGTGCTT
1 TTTAGCTCTTATGAGCTT
74522917 TTGTGTAGCC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 47 0.94
43 3 0.06
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.45
Consensus pattern (42 bp):
TTTAGCTCTTATGAGCTTCAGTTCAACCCTTATGGATTTCCC
Found at i:74529040 original size:45 final size:45
Alignment explanation
Indices: 74528917--74529041 Score: 144
Period size: 45 Copynumber: 2.8 Consensus size: 45
74528907 CGCATCCATA
*
74528917 ATGAACTCAGACCAACTCAACGAGCTCGGA-TGCTTCACATATACC
1 ATGAACTCAGACCAACTCAACGAGCTCGGATTTC-TCACATATACC
* ** * * * * *
74528962 ACGAACTTGGACCAACTCAACAAGTTTGAATTTCTCACATATATC
1 ATGAACTCAGACCAACTCAACGAGCTCGGATTTCTCACATATACC
*
74529007 ATGAACTCAGACCAAATCAACGAGCTCGGATTTCT
1 ATGAACTCAGACCAACTCAACGAGCTCGGATTTCT
74529042 TGATTCCTAG
Statistics
Matches: 62, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
45 60 0.97
46 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.24
Consensus pattern (45 bp):
ATGAACTCAGACCAACTCAACGAGCTCGGATTTCTCACATATACC
Found at i:74532459 original size:16 final size:16
Alignment explanation
Indices: 74532438--74532470 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
74532428 AGGTAATAAT
74532438 TACTGAAATACCCTTA
1 TACTGAAATACCCTTA
74532454 TACTGAAATACCCTTA
1 TACTGAAATACCCTTA
74532470 T
1 T
74532471 GCATGCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (16 bp):
TACTGAAATACCCTTA
Found at i:74532666 original size:27 final size:26
Alignment explanation
Indices: 74532622--74532673 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
74532612 CTCGCTGCAA
*
74532622 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
74532649 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
74532674 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:74532713 original size:2 final size:2
Alignment explanation
Indices: 74532708--74532737 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
74532698 TTCGCCACAC
74532708 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74532738 CTGTTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74537638 original size:27 final size:26
Alignment explanation
Indices: 74537586--74537645 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
74537576 ATATATATAT
*
74537586 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
74537612 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
74537639 ATATCTG
1 ATATCTG
74537646 GCAACCTCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:74544559 original size:39 final size:39
Alignment explanation
Indices: 74544474--74544559 Score: 118
Period size: 39 Copynumber: 2.2 Consensus size: 39
74544464 TATGAGATTG
*
74544474 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGA
* * * * *
74544513 AATATATCCGGACTTGAGGTCCGTAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGA
74544552 AAAATATC
1 AAAATATC
74544560 AGGGTTAAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGA
Found at i:74548943 original size:46 final size:47
Alignment explanation
Indices: 74548807--74549071 Score: 249
Period size: 46 Copynumber: 5.7 Consensus size: 47
74548797 GAGTAAGGTA
*
74548807 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCATATCTC-AAG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTC-CATCTCGAAG
* * *
74548854 TCGATGCATTGTCCCAGACATGGTCTTACACTGACTAT-CATCTCGTAG
1 CCGATGCA-TGTCCCAGACATGGTCTTACACTGGCT-TCCATCTCGAAG
* *
74548902 CCGATGCATGTCCCAAACAT-GTCTTACAATGGCTTCCATCTCGAAG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTTCCATCTCGAAG
* * * *
74548948 CCGATGCATGTCCCAGACAT-GTCTTACACTAGC-ACTCGTCTCGATG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTTC-CATCTCGAAG
* * * * **
74548994 TCGATGCCATATCCCAGACATGGTCTTACACTGGCTTTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTCCAT-CTCGAAG
* *
74549042 TCGATGCATGTCCCAAACAT-GTCTTACACT
1 CCGATGCATGTCCCAGACATGGTCTTACACT
74549072 AGCACACAAT
Statistics
Matches: 182, Mismatches: 26, Indels: 21
0.79 0.11 0.09
Matches are distributed among these distances:
45 2 0.01
46 76 0.42
47 71 0.39
48 31 0.17
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGGCTTCCATCTCGAAG
Found at i:74549047 original size:94 final size:94
Alignment explanation
Indices: 74548807--74549077 Score: 306
Period size: 94 Copynumber: 2.9 Consensus size: 94
74548797 GAGTAAGGTA
*
74548807 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCATATCTCAAGTCGATGCATTGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATGT--AGTCGATGCA-TGTCCCA
74548870 GACATGGTCTTACACT-G-ACTATCATCTCGTAG
63 GACAT-GTCTTACACTAGCAC-ATCATCTCGTAG
* * * * * *
74548902 CCGATG-CATGTCCCAAACAT-GTCTTACAATGGCTTCCATCTCGAAGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAT-GTAGTCGATGCATGTCCCAGA
*
74548965 CATGTCTTACACTAGCAC-TCGTCTCG-ATG
65 CATGTCTTACACTAGCACATCATCTCGTA-G
* * * *
74548994 TCGATGCCATATCCCAGACATGGTCTTACACTGGCTTTCATAATGTGGTCGATGCATGTCCCAAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCAT-ATGTAGTCGATGCATGTCCCAGA
74549059 CATGTCTTACACTAGCACA
65 CATGTCTTACACTAGCACA
74549078 CAATAACCCC
Statistics
Matches: 148, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
91 1 0.01
92 23 0.16
93 37 0.25
94 76 0.51
95 11 0.07
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATGTAGTCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACATCATCTCGTAG
Found at i:74549066 original size:140 final size:141
Alignment explanation
Indices: 74548807--74549069 Score: 365
Period size: 140 Copynumber: 1.9 Consensus size: 141
74548797 GAGTAAGGTA
* * *
74548807 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCATTGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAAGTCGATGCATTATCCCAGA
*
74548872 CATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACAATGGCTT
66 CATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTACAATGGCTT
74548937 CCATCTCGAAG
131 CCATCTCGAAG
* *
74548948 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCGATGTCGATGCCA-TATCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACAT-ATCTC-AAGTCGATG-CATTATCCC
* * * *
74549009 AGACATGGTCTTACACTGGCTTTCATAAT-GTGGTCGATGCATGTCCCAAACATGTCTTACA
63 AGACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAAACATGTCTTACA
74549070 CTAGCACACA
Statistics
Matches: 108, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 17 0.16
140 81 0.75
141 9 0.08
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAAGTCGATGCATTATCCCAGA
CATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTACAATGGCTT
CCATCTCGAAG
Found at i:74553513 original size:28 final size:28
Alignment explanation
Indices: 74553473--74553630 Score: 142
Period size: 28 Copynumber: 5.6 Consensus size: 28
74553463 TATTCCATGT
*
74553473 AAGAGT-TCACATGGACTATCATTCAAAC
1 AAGAGTCT-ACATGGACTATCATTCAAGC
* * *
74553501 AAGAGTCTGCATGGACTATTC-TTCATGT
1 AAGAGTCTACATGGACTA-TCATTCAAGC
* *
74553529 TAGAGTCTACAAGGACTATCATTCCAA-C
1 AAGAGTCTACATGGACTATCATT-CAAGC
** * *
74553557 AAGAGTCCCCATGGACTATCCTTCAGGC
1 AAGAGTCTACATGGACTATCATTCAAGC
* * *
74553585 AAGAGTCCACATGGACTATCTTTCAAGT
1 AAGAGTCTACATGGACTATCATTCAAGC
*
74553613 AAGAGTCTACATGAACTA
1 AAGAGTCTACATGGACTA
74553631 ATTAATGAGT
Statistics
Matches: 104, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
27 4 0.04
28 95 0.91
29 5 0.05
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (28 bp):
AAGAGTCTACATGGACTATCATTCAAGC
Found at i:74553545 original size:56 final size:56
Alignment explanation
Indices: 74553450--74553630 Score: 197
Period size: 56 Copynumber: 3.3 Consensus size: 56
74553440 TTCAGGTCTA
*
74553450 AGTCTACAAGGACTATTC--CATGTAAGAGT-TCACATGGACTATCATTCAAACAAG
1 AGTCTACATGGACTATTCTTCATGTAAGAGTCT-ACATGGACTATCATTCAAACAAG
* * * *
74553504 AGTCTGCATGGACTATTCTTCATGTTAGAGTCTACAAGGACTATCATTCCAACAAG
1 AGTCTACATGGACTATTCTTCATGTAAGAGTCTACATGGACTATCATTCAAACAAG
** * * * * * **
74553560 AGTCCCCATGGACTATCCTTCAGGCAAGAGTCCACATGGACTATCTTTCAAGTAAG
1 AGTCTACATGGACTATTCTTCATGTAAGAGTCTACATGGACTATCATTCAAACAAG
*
74553616 AGTCTACATGAACTA
1 AGTCTACATGGACTA
74553631 ATTAATGAGT
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
54 16 0.15
56 87 0.84
57 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (56 bp):
AGTCTACATGGACTATTCTTCATGTAAGAGTCTACATGGACTATCATTCAAACAAG
Found at i:74554611 original size:30 final size:31
Alignment explanation
Indices: 74554556--74554623 Score: 111
Period size: 30 Copynumber: 2.2 Consensus size: 31
74554546 GACTCCCAAA
*
74554556 AAGTTTAAGTACCAACTTAAGAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAGAAAAAGTGTC
*
74554587 AAGTTTAGGTACCAAATT-AGAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAGAAAAAGTGTC
74554617 AAGTTTA
1 AAGTTTA
74554624 CTTATTAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 19 0.54
31 16 0.46
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAAGAAAAAGTGTC
Found at i:74556924 original size:45 final size:47
Alignment explanation
Indices: 74556871--74556971 Score: 134
Period size: 49 Copynumber: 2.1 Consensus size: 47
74556861 TCTATATAGA
* * *
74556871 ACTACACTTCTTTTATTT-TATT-TTAGAATAAGGTTTTTTAACCTT
1 ACTACACTTCATCTATTTATATTATTAGAATAAGGTTTTTCAACCTT
*
74556916 ATTACACTTCATCTATTTGATATTGATTAGAATAAGGTTTTTCAACCTT
1 ACTACACTTCATCTATTT-ATATT-ATTAGAATAAGGTTTTTCAACCTT
74556965 ACTACAC
1 ACTACAC
74556972 CCCTTCTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 15 0.32
47 4 0.09
49 28 0.60
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.47
Consensus pattern (47 bp):
ACTACACTTCATCTATTTATATTATTAGAATAAGGTTTTTCAACCTT
Found at i:74558746 original size:27 final size:27
Alignment explanation
Indices: 74558698--74558856 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
74558688 GCGAGGCTGC
* *
74558698 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
74558725 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
74558751 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
74558778 CAGATAATTGTGGCATAGCCACCA-AGA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
74558805 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
74558832 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
74558857 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 11 0.10
27 98 0.85
28 6 0.05
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:74558788 original size:54 final size:55
Alignment explanation
Indices: 74558716--74558856 Score: 234
Period size: 54 Copynumber: 2.6 Consensus size: 55
74558706 GTGACGAAGT
* *
74558716 CACCAGATACAGAT-ATTGTGGTAGAGCCACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
74558770 CACCAGATCAGATAATTGTGGCATAGCCACCA-AGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
74558824 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
74558857 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
53 6 0.07
54 76 0.93
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (55 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
Found at i:74562229 original size:79 final size:81
Alignment explanation
Indices: 74562092--74562275 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
74562082 CAAATGATGT
* *
74562092 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
74562156 GTGCGAGTTACTA-ATC
66 ATGCGAGTTACTATA-A
* * * **
74562172 CCGGGCTAAG-CCTGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
74562234 TATGCGAGTTACTATAA
65 TATGCGAGTTACTATAA
*
74562251 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74562276 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTATAA
Found at i:74562240 original size:40 final size:40
Alignment explanation
Indices: 74562091--74562275 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
74562081 TCAAATGATG
* * *
74562091 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
74562131 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74562170 TCCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74562210 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74562251 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74562276 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74562298 original size:79 final size:79
Alignment explanation
Indices: 74562146--74562308 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 79
74562136 ACTAAGATCT
* * * **
74562146 GAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
* *
74562211 CCGGGTTAAGTCCC
66 CCGAGTTAAATCCC
*
74562225 GAAGGCATTTATGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTATGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
* *
74562288 TATCC-AGTTAAATTCC
63 AATCCGAGTTAAATCCC
74562304 GAAGG
1 GAAGG
74562309 TACGTGATTT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.63
80 24 0.34
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGAGTTAAATCCC
Found at i:74563881 original size:26 final size:26
Alignment explanation
Indices: 74563850--74563931 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
74563840 TGAAATGCCC
*
74563850 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
74563876 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
74563902 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74563928 ATCA
1 ATCA
74563932 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74585481 original size:31 final size:31
Alignment explanation
Indices: 74585437--74585507 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 31
74585427 AAAATTTAAT
74585437 TGTATACAACTGAACCACAATCAAAGTTT-TA
1 TGTATA-AACTGAACCACAATCAAAGTTTATA
*
74585468 TGTATAAATCTGAACTACAATCAAAGTTTCATA
1 TGTATAAA-CTGAACCACAATCAAAGTTT-ATA
74585501 TGTATAA
1 TGTATAA
74585508 TTGGACCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 2 0.06
31 25 0.69
33 9 0.25
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.32
Consensus pattern (31 bp):
TGTATAAACTGAACCACAATCAAAGTTTATA
Found at i:74586428 original size:18 final size:18
Alignment explanation
Indices: 74586402--74586460 Score: 77
Period size: 18 Copynumber: 3.3 Consensus size: 18
74586392 ACCACAGGTG
74586402 AAAAA-GATAATATCT-TT
1 AAAAATGATAATAT-TATT
*
74586419 TAAAATGATAATATTATT
1 AAAAATGATAATATTATT
*
74586437 AAAAATGATAATTTTATT
1 AAAAATGATAATATTATT
74586455 AAAAAT
1 AAAAAT
74586461 AATTTTATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
17 5 0.14
18 32 0.86
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (18 bp):
AAAAATGATAATATTATT
Found at i:74586621 original size:35 final size:35
Alignment explanation
Indices: 74586582--74586651 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
74586572 TATTGAGCTG
74586582 GTAGCTTTTTACACGTATATATCAATTAAAATATA
1 GTAGCTTTTTACACGTATATATCAATTAAAATATA
74586617 GTAGCTTTTTACACGTATATATCAATTAAAATATA
1 GTAGCTTTTTACACGTATATATCAATTAAAATATA
74586652 ATATACTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (35 bp):
GTAGCTTTTTACACGTATATATCAATTAAAATATA
Found at i:74589361 original size:15 final size:16
Alignment explanation
Indices: 74589343--74589372 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74589333 AATTGTTTTA
74589343 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
74589358 TTACATAATTTCACT
1 TTACATAATTTCACT
74589373 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:74589699 original size:50 final size:50
Alignment explanation
Indices: 74589584--74589861 Score: 227
Period size: 50 Copynumber: 5.5 Consensus size: 50
74589574 CCGGTACGCA
* * * * *** *
74589584 TAGTAGCCTGTACTTAGTACTACACATGCGACC-AACAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
* *
74589633 TAGTACCCTGCACTTAGTACTACACACGTGGCCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
* * * *** *** * *
74589683 TAGTAGCATGCACTTAGTACTACACACGTGATCAAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTAATACACG
* * * * *
74589734 TAGTAGCCTGCACTTAGTACTACATATGCGACCTAACTATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
* * * *
74589784 TAGTAACTTGCACTTAGTACTACACATGTGACCTAAAACCATCTTAA-ACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC-TAATACACG
*
74589836 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
74589862 TGTGTTCTCA
Statistics
Matches: 179, Mismatches: 45, Indels: 7
0.77 0.19 0.03
Matches are distributed among these distances:
49 28 0.16
50 80 0.45
51 36 0.20
52 33 0.18
53 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
Found at i:74589757 original size:101 final size:101
Alignment explanation
Indices: 74589633--74589814 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
74589623 CCGGTACATG
* * *
74589633 TAGTACCCTGCACTTAGTACTACACACGTGGCCTAACCATCTAATACACGTAGTAGCATGCACTT
1 TAGTACCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTAGTAACATGCACTT
74589698 AGTACTACACACGTGATCAAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATCAAAGTTGTCGGGTACGCA
* * * * * *
74589734 TAGTAGCCTGCACTTAGTACTACATATGCGACCTAACTATCTAGTACACGTAGTAACTTGCACTT
1 TAGTACCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTAGTAACATGCACTT
*
74589799 AGTACTACACATGTGA
66 AGTACTACACACGTGA
74589815 CCTAAAACCA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (101 bp):
TAGTACCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTAGTAACATGCACTT
AGTACTACACACGTGATCAAAGTTGTCGGGTACGCA
Found at i:74589764 original size:150 final size:152
Alignment explanation
Indices: 74589576--74589861 Score: 416
Period size: 151 Copynumber: 1.9 Consensus size: 152
74589566 GAAGCTATCC
* * * *
74589576 GGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACC-AACAATCCGGTACATGTAGTACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCCAGTACACGTAGTAAC
* * *
74589640 CTGCACTTAGTACTACACACGTGGCCT-AACCATC-TAATACACGTAGTAGCATGCACTTAGTAC
66 CTGCACTTAGTACTACACACGTGACCTAAACCATCTTAA-ACACATAGTAGCATGCACATAGTAC
74589703 TACACACGTGATCAAAGTTGTCG
130 TACACACGTGATCAAAGTTGTCG
* * *
74589726 GGTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCTAACTATCTAGTACACGTAGTAAC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCCAGTACACGTAGTAAC
* * *
74589791 TTGCACTTAGTACTACACATGTGACCTAAAACCATCTTAAACACATAGTAGCCTGCACATAGTAC
66 CTGCACTTAGTACTACACACGTGACCT-AAACCATCTTAAACACATAGTAGCATGCACATAGTAC
74589856 TACACA
130 TACACA
74589862 TGTGTTCTCA
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
150 39 0.33
151 42 0.35
153 35 0.29
154 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (152 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCCAGTACACGTAGTAAC
CTGCACTTAGTACTACACACGTGACCTAAACCATCTTAAACACATAGTAGCATGCACATAGTACT
ACACACGTGATCAAAGTTGTCG
Found at i:74594407 original size:12 final size:14
Alignment explanation
Indices: 74594390--74594421 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
74594380 AACTCATATT
74594390 TTAAAAT-A-AAAA
1 TTAAAATAACAAAA
74594402 TTAAAATAACAAAA
1 TTAAAATAACAAAA
74594416 TTAAAA
1 TTAAAA
74594422 ATACCACCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (14 bp):
TTAAAATAACAAAA
Found at i:74597730 original size:47 final size:48
Alignment explanation
Indices: 74597673--74597782 Score: 143
Period size: 49 Copynumber: 2.3 Consensus size: 48
74597663 GCCATATCCT
* * *
74597673 AGACATGGTCTTACACTGACTCATC-CATCAAG-TCGATGCCAAGTCCC
1 AGACATGGTCTTACACTGACT-ATCAAATCAAGACCGACGCCAAGTCCC
* *
74597720 AGACATGGTCTTACACTGACTATCAAAATCGAGACCGACGCCATGTCCC
1 AGACATGGTCTTACACTGACTATC-AAATCAAGACCGACGCCAAGTCCC
74597769 AGACATGGTCTTAC
1 AGACATGGTCTTAC
74597783 GCTAGCTCTC
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
46 3 0.05
47 21 0.38
48 5 0.09
49 26 0.47
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (48 bp):
AGACATGGTCTTACACTGACTATCAAATCAAGACCGACGCCAAGTCCC
Found at i:74597899 original size:46 final size:49
Alignment explanation
Indices: 74597655--74597975 Score: 217
Period size: 46 Copynumber: 6.8 Consensus size: 49
74597645 ATAGGGTATA
* * * *
74597655 ATGCCAATGCCATATCCTAGACATGGTCTTACACT-GACTCATCCA--TC-
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTC-TACATTTCG
* * * * **
74597702 AAGTCGATGCCAAGTCCCAGACATGGTCTTACACT-G-ACTATCAAAATCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTA-C-ATTTCG
* * * *
74597751 A-GACCGACGCCATGTCCCAGACATGGTCTTACGCTAGCTCTCACATATCC
1 ATG-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATTTCG
* ** * *
74597801 ATGCCGATGCCATGTCCTAGTTATGGTCTTAAACTA--AC-ACATTTCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATTTCG
* *
74597847 -TAGCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCT-TACATCTCG
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATTTCG
* * * * *
74597893 AGGCCGATG-CATGTCCAAGAAAT-GTCTTACACTAGCTCT-CGTTTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATTTCG
*
74597939 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
74597976 TGCACAAATA
Statistics
Matches: 217, Mismatches: 39, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 65 0.30
47 43 0.20
48 16 0.07
49 29 0.13
50 33 0.15
51 4 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (49 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATTTCG
Found at i:74603209 original size:15 final size:15
Alignment explanation
Indices: 74603191--74603247 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
74603181 TATCTGTTTT
74603191 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
74603206 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
74603221 ATTGAATTTATATTG
1 ATTGAATTTATATTG
*
74603236 ATGGAA-TTATAT
1 ATTGAATTTATAT
74603248 CATATATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 6 0.16
15 31 0.84
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:74603226 original size:30 final size:28
Alignment explanation
Indices: 74603187--74603245 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
74603177 TGAATATCTG
74603187 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGA-TGAAATTA
*
74603216 TTTTGATTGAATTTATATTGATGGAATTA
1 TTTT-ATTGAATTTATATTGATGAAATTA
74603245 T
1 T
74603246 ATCATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATGAAATTA
Found at i:74603679 original size:21 final size:23
Alignment explanation
Indices: 74603620--74603684 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
74603610 GCTTTACTGA
74603620 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
74603643 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
74603665 T-AGGCACTTTATGTGTCGTA
1 TCAGGCACTTTATGTGTCGTA
74603685 CTCTGATCAG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
21 15 0.43
22 3 0.09
23 17 0.49
ACGTcount: A:0.15, C:0.20, G:0.25, T:0.40
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:74604131 original size:36 final size:36
Alignment explanation
Indices: 74604091--74604163 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
74604081 ATAGTTGAAT
74604091 ATAGTTTAATGATATTGAATTGTGAATAAATTAAGG
1 ATAGTTTAATGATATTGAATTGTGAATAAATTAAGG
74604127 ATAGTTTAATGATATTGAATTGTGAATAAATTAAGG
1 ATAGTTTAATGATATTGAATTGTGAATAAATTAAGG
74604163 A
1 A
74604164 AAGCTATACC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.38
Consensus pattern (36 bp):
ATAGTTTAATGATATTGAATTGTGAATAAATTAAGG
Found at i:74605022 original size:27 final size:28
Alignment explanation
Indices: 74604965--74605034 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74604955 AAACTTGTAC
*
74604965 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74604993 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74605020 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74605035 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74605045 original size:27 final size:27
Alignment explanation
Indices: 74604965--74605046 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74604955 AAACTTGTAC
* * *
74604965 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
74604993 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74605020 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74605047 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74612941 original size:27 final size:28
Alignment explanation
Indices: 74612884--74612953 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74612874 AAACTTGTAC
*
74612884 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74612912 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74612939 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74612954 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74612964 original size:27 final size:27
Alignment explanation
Indices: 74612884--74612965 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74612874 AAACTTGTAC
* * *
74612884 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
74612912 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74612939 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74612966 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74619661 original size:15 final size:15
Alignment explanation
Indices: 74619643--74619699 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
74619633 TATCTGTTTT
74619643 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
74619658 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
74619673 ATTGAATTTATATTG
1 ATTGAATTTATATTG
*
74619688 ATGGAA-TTATAT
1 ATTGAATTTATAT
74619700 CATATATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 6 0.16
15 31 0.84
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:74619678 original size:30 final size:28
Alignment explanation
Indices: 74619639--74619697 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
74619629 TGAATATCTG
74619639 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGA-TGAAATTA
*
74619668 TTTTGATTGAATTTATATTGATGGAATTA
1 TTTT-ATTGAATTTATATTGATGAAATTA
74619697 T
1 T
74619698 ATCATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATGAAATTA
Found at i:74620130 original size:21 final size:23
Alignment explanation
Indices: 74620071--74620135 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
74620061 GCTTTACTGA
74620071 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
74620094 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
74620116 T-AGGCACTTTATGTGTCGTA
1 TCAGGCACTTTATGTGTCGTA
74620136 CTCTGATCAG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
21 15 0.43
22 3 0.09
23 17 0.49
ACGTcount: A:0.15, C:0.20, G:0.25, T:0.40
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:74626223 original size:15 final size:15
Alignment explanation
Indices: 74626205--74626261 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
74626195 TATCTGTTTT
74626205 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
74626220 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
74626235 ATTGAATTTATATTG
1 ATTGAATTTATATTG
*
74626250 ATGGAA-TTATAT
1 ATTGAATTTATAT
74626262 AATATATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 6 0.16
15 31 0.84
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:74626240 original size:30 final size:28
Alignment explanation
Indices: 74626201--74626259 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
74626191 TGAATATCTG
74626201 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGA-TGAAATTA
*
74626230 TTTTGATTGAATTTATATTGATGGAATTA
1 TTTT-ATTGAATTTATATTGATGAAATTA
74626259 T
1 T
74626260 ATAATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATGAAATTA
Found at i:74628211 original size:40 final size:40
Alignment explanation
Indices: 74628144--74628287 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
74628134 AAATTGAATG
* * * * *
74628144 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
74628184 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
74628224 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
74628264 CTA-CCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
74628288 TTTGTGCATG
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 23 0.27
40 63 0.73
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:74628281 original size:39 final size:39
Alignment explanation
Indices: 74628183--74628310 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
74628173 TGCTGGAAAT
* * *
74628183 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
74628223 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
74628263 TCTA-CCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
74628302 TATATCCGG
1 TATATCCGG
74628311 TTATATTCCG
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 35 0.46
40 40 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:74629909 original size:20 final size:20
Alignment explanation
Indices: 74629884--74629921 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
74629874 GTGTCGTATT
74629884 TCAGGCACCTCGTGTGTCTA
1 TCAGGCACCTCGTGTGTCTA
74629904 TCAGGCACCTCGTGTGTC
1 TCAGGCACCTCGTGTGTC
74629922 GTTTTAGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.32, G:0.26, T:0.29
Consensus pattern (20 bp):
TCAGGCACCTCGTGTGTCTA
Found at i:74635851 original size:2 final size:2
Alignment explanation
Indices: 74635834--74635875 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
74635824 TAAATTGGAT
* *
74635834 TA TA TA T- TA TA AA TA TA TA TA TA TA TA TG TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74635875 T
1 T
74635876 GGGTGTGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:74635883 original size:2 final size:2
Alignment explanation
Indices: 74635878--74635902 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
74635868 ATATATATGG
74635878 GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT G
74635903 AATGAGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:74636076 original size:15 final size:15
Alignment explanation
Indices: 74636058--74636114 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
74636048 TATCTGTTTT
74636058 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
74636073 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
74636088 ATTGAATTTATATTG
1 ATTGAATTTATATTG
*
74636103 ATGGAA-TTATAT
1 ATTGAATTTATAT
74636115 AATATATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 6 0.16
15 31 0.84
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:74636093 original size:30 final size:28
Alignment explanation
Indices: 74636029--74636112 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 28
74636019 GATAAGTTTA
* *
74636029 TATTGAATTGAT-TT-ATGAATATCTGTTT
1 TATTGAATTTATATTGATGAA-AT-TATTT
74636057 TATTGAATTTATATTGATTGAAATTATTT
1 TATTGAATTTATATTGA-TGAAATTATTT
*
74636086 TGATTGAATTTATATTGATGGAATTAT
1 T-ATTGAATTTATATTGATGAAATTAT
74636113 ATAATATATA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
28 11 0.22
29 15 0.31
30 19 0.39
31 4 0.08
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.52
Consensus pattern (28 bp):
TATTGAATTTATATTGATGAAATTATTT
Found at i:74636535 original size:20 final size:20
Alignment explanation
Indices: 74636510--74636547 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
74636500 GTGTCGTATT
74636510 TCAGGCACCTCGTGTGTCTA
1 TCAGGCACCTCGTGTGTCTA
74636530 TCAGGCACCTCGTGTGTC
1 TCAGGCACCTCGTGTGTC
74636548 GTTTTAGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.32, G:0.26, T:0.29
Consensus pattern (20 bp):
TCAGGCACCTCGTGTGTCTA
Found at i:74639379 original size:102 final size:100
Alignment explanation
Indices: 74639211--74639488 Score: 301
Period size: 101 Copynumber: 2.7 Consensus size: 100
74639201 CTTTTTGGCC
* * * *
74639211 AAGTATTGATATTTTTTGAATTATCGATA-CCCTCTCTTAAAAATGATACCAAAGTGGCATTATG
1 AAGTATTGATAATTTTTGAATTATTGATACCCCT-TCTT-AAAATGATA-CAAAATGACATTATG
* * *
74639275 TTTTCACAAACCCTAATAAGTGTCGATACCTTTTGATT
63 TTTTCACAAACCCTAATAAGTATCAATACCATTTGATT
* * *
74639313 AAGTATTGATAATTTTTGAAATATTAATACCCCTTCTTAAAAGTGATATCAAAATGACATTTTGT
1 AAGTATTGATAATTTTTGAATTATTGATACCCCTTCTTAAAA-TGATA-CAAAATGACATTATGT
* *
74639378 TTT-TCAAACCCTAATAATTATCAATACCATTTGATT
64 TTTCACAAACCCTAATAAGTATCAATACCATTTGATT
* ** * *
74639414 ATGTATCAAT-ATTTTCTGAATTATTGATGCCCCTTCTTAAATATGATACTAAAATAACATTATG
1 AAGTATTGATAATTTT-TGAATTATTGATACCCCTTCTTAAA-ATGATAC-AAAATGACATTATG
74639478 TTTCTCACAAA
63 TTT-TCACAAA
74639489 ACTTACAAAG
Statistics
Matches: 147, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
100 6 0.04
101 81 0.55
102 52 0.35
103 8 0.05
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (100 bp):
AAGTATTGATAATTTTTGAATTATTGATACCCCTTCTTAAAATGATACAAAATGACATTATGTTT
TCACAAACCCTAATAAGTATCAATACCATTTGATT
Found at i:74640812 original size:36 final size:36
Alignment explanation
Indices: 74640772--74640880 Score: 99
Period size: 36 Copynumber: 3.2 Consensus size: 36
74640762 CATGATCATA
74640772 TAATAATATTGATAAATTATTATTCTGATGCTAATT
1 TAATAATATTGATAAATTATTATTCTGATGCTAATT
* * * ** *
74640808 TAATAATA-TAATTAA-CA--ATAAT-AT-C--ATA
1 TAATAATATTGATAAATTATTATTCTGATGCTAATT
*
74640836 TAATAATATTGATAAATTATTATTCTGATGTTAATT
1 TAATAATATTGATAAATTATTATTCTGATGCTAATT
74640872 TAATAATAT
1 TAATAATAT
74640881 AATTAACAAT
Statistics
Matches: 52, Mismatches: 13, Indels: 16
0.64 0.16 0.20
Matches are distributed among these distances:
28 10 0.19
29 5 0.10
30 2 0.04
31 2 0.04
32 6 0.12
33 2 0.04
34 1 0.02
35 5 0.10
36 19 0.37
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.45
Consensus pattern (36 bp):
TAATAATATTGATAAATTATTATTCTGATGCTAATT
Found at i:74640816 original size:64 final size:64
Alignment explanation
Indices: 74640766--74640894 Score: 217
Period size: 64 Copynumber: 2.0 Consensus size: 64
74640756 TTTAATCATG
74640766 ATCATATAATAATATTGATAAATTATTATTCTGATGCTAATTTAATAATA-TAATTAACAATAAT
1 ATCATATAATAATATTGATAAATTATTATTCTGATGCTAATTTAATAATATTAATT-ACAATAAT
*
74640830 ATCATATAATAATATTGATAAATTATTATTCTGATGTTAATTTAATAATA-TAATTAACAATAAT
1 ATCATATAATAATATTGATAAATTATTATTCTGATGCTAATTTAATAATATTAATT-ACAATAAT
74640894 A
1 A
74640895 GATATTCTCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.43
Consensus pattern (64 bp):
ATCATATAATAATATTGATAAATTATTATTCTGATGCTAATTTAATAATATTAATTACAATAAT
Found at i:74641009 original size:22 final size:23
Alignment explanation
Indices: 74640967--74641009 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
74640957 ATAAATTTAG
*
74640967 ATTATAAATTATACATAAATACT
1 ATTATAAATAATACATAAATACT
*
74640990 ATTATAAA-AATATATAAATA
1 ATTATAAATAATACATAAATA
74641010 GAAAAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
ATTATAAATAATACATAAATACT
Found at i:74641341 original size:42 final size:43
Alignment explanation
Indices: 74641295--74641393 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 43
74641285 TTTTCTTAAA
74641295 ATATATTTATATTATTTTTA-ATTTA-ATAT-TTAATAATTTTAT
1 ATATATTTATATTATTTTTATATTTAGATATCTTAAT-ATTTT-T
* *
74641337 ATATATTTAT-TAAATTTTTATATTTAGTTATCTTAATATTTTT
1 ATATATTTATAT-TATTTTTATATTTAGATATCTTAATATTTTT
*
74641380 A-ATTTTTATATTAT
1 ATATATTTATATTAT
74641394 AGTAATATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
41 1 0.02
42 26 0.54
43 8 0.17
44 8 0.17
45 5 0.10
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (43 bp):
ATATATTTATATTATTTTTATATTTAGATATCTTAATATTTTT
Found at i:74641344 original size:19 final size:19
Alignment explanation
Indices: 74641316--74641359 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
74641306 TTATTTTTAA
74641316 TTTA-ATATTTAAT-AATT
1 TTTATATATTTAATAAATT
*
74641333 TTATATATATTTATTAAATT
1 TT-TATATATTTAATAAATT
74641353 TTTATAT
1 TTTATAT
74641360 TTAGTTATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 2 0.09
18 2 0.09
19 13 0.57
20 6 0.26
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTATATATTTAATAAATT
Found at i:74641347 original size:23 final size:23
Alignment explanation
Indices: 74641321--74641419 Score: 66
Period size: 21 Copynumber: 4.3 Consensus size: 23
74641311 TTTAATTTAA
74641321 TATTTAATAATTTTATATATATT
1 TATTTAATAATTTTATATATATT
* * *
74641344 TA-TTAA-ATTTTTATATTTAGT
1 TATTTAATAATTTTATATATATT
*
74641365 TATCTTAAT-ATTTT-TA-ATTTT
1 TAT-TTAATAATTTTATATATATT
*
74641386 TATATTATAGTAATATTATATATTATT
1 TAT-TTA-A-TAATTTTATATA-TATT
74641413 T-TTTAAT
1 TATTTAAT
74641420 TTTTATGTAT
Statistics
Matches: 57, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
21 22 0.39
22 7 0.12
23 12 0.21
24 5 0.09
25 5 0.09
26 2 0.04
27 4 0.07
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (23 bp):
TATTTAATAATTTTATATATATT
Found at i:74641360 original size:36 final size:34
Alignment explanation
Indices: 74641300--74641425 Score: 127
Period size: 32 Copynumber: 3.7 Consensus size: 34
74641290 TTAAAATATA
* *
74641300 TTTATAT-TATTTTTAA-TTTAATATTTAATAAT
1 TTTATATATATTTTTAATTTTTATATTTAGTAAT
*
74641332 TTTATATATATTTATTAAATTTTTATATTTAGTTA-
1 TTTATATATATTT-TT-AATTTTTATATTTAGTAAT
*
74641367 TCT-TA-ATATTTTTAATTTTTATATTATAGTAAT
1 TTTATATATATTTTTAATTTTTATATT-TAGTAAT
*
74641400 ATTATATATTATTTTTTAATTTTTAT
1 TTTATATA-TA-TTTTTAATTTTTAT
74641426 GTATTATAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
31 12 0.16
32 14 0.18
33 12 0.16
34 6 0.08
35 5 0.06
36 14 0.18
37 14 0.18
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (34 bp):
TTTATATATATTTTTAATTTTTATATTTAGTAAT
Found at i:74641367 original size:21 final size:23
Alignment explanation
Indices: 74641307--74641384 Score: 67
Period size: 21 Copynumber: 3.6 Consensus size: 23
74641297 ATATTTATAT
* *
74641307 TATTTTTA-ATTTA-ATATTTAA
1 TATTTTTATATTTAGTTACTTAA
* * *
74641328 TAATTTTATATATATTTA-TTAA
1 TATTTTTATATTTAGTTACTTAA
74641350 -ATTTTTATATTTAGTTATCTTAA
1 TATTTTTATATTTAGTTA-CTTAA
74641373 TATTTTTA-ATTT
1 TATTTTTATATTT
74641385 TTATATTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
21 21 0.46
22 8 0.17
23 10 0.22
24 7 0.15
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (23 bp):
TATTTTTATATTTAGTTACTTAA
Found at i:74653227 original size:42 final size:42
Alignment explanation
Indices: 74653180--74653301 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
74653170 TACCATACCA
* * * * *
74653180 ATGCCATATCTCAGATATGGTCTTTCATG-GGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* * *
74653222 ATGCCAATAGCCCAGCTATAGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
74653265 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCA
74653302 ACTAACCCTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 31 0.47
43 34 0.52
44 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:74653259 original size:43 final size:42
Alignment explanation
Indices: 74653211--74653301 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 42
74653201 CTTTCATGGG
* *
74653211 ATCTCATATTGATGCCAATAGCCCAGCTATAGTCTTACACG-A
1 ATCTCATATCGATGCC-ATAGCCCAGATATAGTCTTACACGTA
* *
74653253 AGTCTCATATCGATGCCATATCCCAGATATGGTCTTACACGTA
1 A-TCTCATATCGATGCCATAGCCCAGATATAGTCTTACACGTA
74653296 ATCTCA
1 ATCTCA
74653302 ACTAACCCTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
ATCTCATATCGATGCCATAGCCCAGATATAGTCTTACACGTA
Found at i:74657956 original size:17 final size:17
Alignment explanation
Indices: 74657934--74657968 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
74657924 TCTCTCACAC
74657934 GGCCATGACACGCCCGT
1 GGCCATGACACGCCCGT
*
74657951 GGCCATGACACGTCCGT
1 GGCCATGACACGCCCGT
74657968 G
1 G
74657969 TCCTAGCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.37, G:0.31, T:0.14
Consensus pattern (17 bp):
GGCCATGACACGCCCGT
Found at i:74660010 original size:29 final size:29
Alignment explanation
Indices: 74659977--74660107 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
74659967 ATGACGAGAT
74659977 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74660006 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
74660035 CGGCACTGTGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
74660064 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
74660093 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
74660108 GAAATGGAGT
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
28 2 0.02
29 80 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:74662358 original size:46 final size:46
Alignment explanation
Indices: 74662296--74662466 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
74662286 ACATCTTATA
74662296 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAG
* * * * * * *
74662342 GCCGATGTATATCCCAGACATGTCTCAAACTAGCTTACGT-ATCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCA-CGAG
* * *
74662388 GCCAATGCCATGTCCTAGACATGGTCTTACACTGGC-T-C-TCACAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCAC---GAG
74662436 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
74662467 AGCACACAAA
Statistics
Matches: 99, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
45 3 0.03
46 55 0.56
47 25 0.25
48 16 0.16
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAG
Found at i:74665660 original size:123 final size:123
Alignment explanation
Indices: 74665441--74665779 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
74665431 GAATTATGTG
74665441 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
74665506 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
74665564 AAATGAAATATAGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
74665629 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
74665687 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
74665752 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
74665780 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:74665803 original size:40 final size:40
Alignment explanation
Indices: 74665748--74665890 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
74665738 TGAATGATAC
* * *
74665748 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTATGCAAGTAGTTATAT
*
74665788 CCGGGCTAATACCCGAAGGCATTTATGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTATGCAAGTAGTTATAT
* *
74665828 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTATGCAAGTAGTTATAT
* *
74665868 CCGGGCTAAGACCCGAGGGCATT
1 CCGGGCTAATACCCGAAGGCATT
74665891 CGTGCGTGTG
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 93 0.99
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGGCTAATACCCGAAGGCATTTATGCAAGTAGTTATAT
Found at i:74665905 original size:40 final size:40
Alignment explanation
Indices: 74665748--74665911 Score: 195
Period size: 40 Copynumber: 4.1 Consensus size: 40
74665738 TGAATGATAC
* * * **
74665748 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTCGTTATAT
* *
74665788 CCGGGCTAATACCCGAAGGCATTTATGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
74665828 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
* * * ** *
74665868 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
74665908 CCGG
1 CCGG
74665912 TTGTATTCCG
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 110 0.99
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
Found at i:74670585 original size:17 final size:19
Alignment explanation
Indices: 74670559--74670595 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
74670549 AACCGACTCG
74670559 ATACGCTCT-AT-AATCTC
1 ATACGCTCTAATAAATCTC
*
74670576 ATACGGTCTAATAAATCTC
1 ATACGCTCTAATAAATCTC
74670595 A
1 A
74670596 GACTCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 2 0.12
19 7 0.41
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (19 bp):
ATACGCTCTAATAAATCTC
Found at i:74674888 original size:222 final size:222
Alignment explanation
Indices: 74674502--74674945 Score: 888
Period size: 222 Copynumber: 2.0 Consensus size: 222
74674492 CAAAGTACGT
74674502 AATACCTACCGCAAATACTATACATTCATAGCATGTAACATTATAACCATGATATACATAATCCA
1 AATACCTACCGCAAATACTATACATTCATAGCATGTAACATTATAACCATGATATACATAATCCA
74674567 TAAGCAATATAACCAAATTCAAACATAAAATTTAAGCCATTTTCACATGGCTTAGATTACACATA
66 TAAGCAATATAACCAAATTCAAACATAAAATTTAAGCCATTTTCACATGGCTTAGATTACACATA
74674632 ACCATAATTTAACATTTCAAAATATAATCCAGCCTATACATGCCATACATTCAGAAATTCACTTA
131 ACCATAATTTAACATTTCAAAATATAATCCAGCCTATACATGCCATACATTCAGAAATTCACTTA
74674697 TAAAGATACCGAAGATAGTCGATAGTG
196 TAAAGATACCGAAGATAGTCGATAGTG
74674724 AATACCTACCGCAAATACTATACATTCATAGCATGTAACATTATAACCATGATATACATAATCCA
1 AATACCTACCGCAAATACTATACATTCATAGCATGTAACATTATAACCATGATATACATAATCCA
74674789 TAAGCAATATAACCAAATTCAAACATAAAATTTAAGCCATTTTCACATGGCTTAGATTACACATA
66 TAAGCAATATAACCAAATTCAAACATAAAATTTAAGCCATTTTCACATGGCTTAGATTACACATA
74674854 ACCATAATTTAACATTTCAAAATATAATCCAGCCTATACATGCCATACATTCAGAAATTCACTTA
131 ACCATAATTTAACATTTCAAAATATAATCCAGCCTATACATGCCATACATTCAGAAATTCACTTA
74674919 TAAAGATACCGAAGATAGTCGATAGTG
196 TAAAGATACCGAAGATAGTCGATAGTG
74674946 TGATAAGCTT
Statistics
Matches: 222, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 222 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (222 bp):
AATACCTACCGCAAATACTATACATTCATAGCATGTAACATTATAACCATGATATACATAATCCA
TAAGCAATATAACCAAATTCAAACATAAAATTTAAGCCATTTTCACATGGCTTAGATTACACATA
ACCATAATTTAACATTTCAAAATATAATCCAGCCTATACATGCCATACATTCAGAAATTCACTTA
TAAAGATACCGAAGATAGTCGATAGTG
Found at i:74683743 original size:40 final size:41
Alignment explanation
Indices: 74683638--74683744 Score: 157
Period size: 40 Copynumber: 2.7 Consensus size: 41
74683628 GCTACTCGTT
*
74683638 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
*
74683678 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
*
74683718 CAAATGCCTTC-GGATCTTAGTCCGGAT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT
74683745 ATCATTCGAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 3 0.05
40 56 0.92
41 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
Found at i:74684208 original size:38 final size:38
Alignment explanation
Indices: 74684157--74684246 Score: 180
Period size: 38 Copynumber: 2.4 Consensus size: 38
74684147 AGGCTACCTA
74684157 TGGCCGAACATACACATCAACTCATATACTCATTCATG
1 TGGCCGAACATACACATCAACTCATATACTCATTCATG
74684195 TGGCCGAACATACACATCAACTCATATACTCATTCATG
1 TGGCCGAACATACACATCAACTCATATACTCATTCATG
74684233 TGGCCGAACATACA
1 TGGCCGAACATACA
74684247 TGTCTATGTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.24
Consensus pattern (38 bp):
TGGCCGAACATACACATCAACTCATATACTCATTCATG
Found at i:74688401 original size:46 final size:46
Alignment explanation
Indices: 74688348--74688442 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
74688338 AATTAAATTG
74688348 TAGTTATCTTTTTAAATCGTTGTTTGTTTGCGGAAGCTTTTTGAAA
1 TAGTTATCTTTTTAAATCGTTGTTTGTTTGCGGAAGCTTTTTGAAA
74688394 TAGTTATCTTTTTAAATCGTTGTTTGTTTGCGGAAGCTTTTTGAAA
1 TAGTTATCTTTTTAAATCGTTGTTTGTTTGCGGAAGCTTTTTGAAA
74688440 TAG
1 TAG
74688443 GATGCATGCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.22, C:0.08, G:0.20, T:0.49
Consensus pattern (46 bp):
TAGTTATCTTTTTAAATCGTTGTTTGTTTGCGGAAGCTTTTTGAAA
Found at i:74689719 original size:17 final size:17
Alignment explanation
Indices: 74689697--74689731 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
74689687 ATAAACACTT
*
74689697 AGATTTTGGGGCATTAC
1 AGATTTTAGGGCATTAC
*
74689714 AGATTTTAGGGCGTTAC
1 AGATTTTAGGGCATTAC
74689731 A
1 A
74689732 AATAGCATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (17 bp):
AGATTTTAGGGCATTAC
Found at i:74692445 original size:20 final size:20
Alignment explanation
Indices: 74692422--74692468 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
74692412 ATACTAATTG
74692422 CAACTTACCATAATCTTTCA
1 CAACTTACCATAATCTTTCA
* *
74692442 CAACATACCATAGTCTTTCA
1 CAACTTACCATAATCTTTCA
74692462 CAACTTA
1 CAACTTA
74692469 AACATTGTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (20 bp):
CAACTTACCATAATCTTTCA
Found at i:74692480 original size:21 final size:20
Alignment explanation
Indices: 74692430--74692480 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
74692420 TGCAACTTAC
* *
74692430 CATAATCTTTCACAACATAC
1 CATAGTCTTTCACAACATAA
*
74692450 CATAGTCTTTCACAACTTAAA
1 CATAGTCTTTCACAACAT-AA
*
74692471 CATTGTCTTT
1 CATAGTCTTT
74692481 AAGTTTTCCG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.37
Consensus pattern (20 bp):
CATAGTCTTTCACAACATAA
Found at i:74695263 original size:169 final size:170
Alignment explanation
Indices: 74694979--74695315 Score: 622
Period size: 169 Copynumber: 2.0 Consensus size: 170
74694969 AAAATAAGCC
74694979 AAATCACATGGCTATACACATAACAAACCATTCATCATTTACAAGCCAACTCAAATGGCTAAATC
1 AAATCACATGGCTATACACATAACAAACCATTCATCATTTACAAGCCAACTCAAATGGCTAAATC
74695044 CATTACTAACATATACCAAAAAGACCATAAATCCTATACATGCCATATAACCAAATACATAAGCT
66 CATTACTAACATATACCAAAAAGACCATAAATCCTATACATGCCATATAACCAAATACATAAGCT
*
74695109 CAAAAGTACCAAAGTGGAAGCTCGATAGTGTGATGTAACG
131 CAAAAGTACCAAAGTGGAAACTCGATAGTGTGATGTAACG
* *
74695149 AAAT-ACATGGCTATACACATAACAAACCATTCATTATTTACAAGCTAACTCAAATGGCTAAATC
1 AAATCACATGGCTATACACATAACAAACCATTCATCATTTACAAGCCAACTCAAATGGCTAAATC
* *
74695213 CATTACTAACGTATACCAAAATGACCATAAATCCTATACATGCCATATAACCAAATACATAAGCT
66 CATTACTAACATATACCAAAAAGACCATAAATCCTATACATGCCATATAACCAAATACATAAGCT
74695278 CAAAAGTACCAAAGTGGAAACTCGATAGTGTGATGTAA
131 CAAAAGTACCAAAGTGGAAACTCGATAGTGTGATGTAA
74695316 TCTCCGACGA
Statistics
Matches: 162, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
169 158 0.98
170 4 0.02
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.23
Consensus pattern (170 bp):
AAATCACATGGCTATACACATAACAAACCATTCATCATTTACAAGCCAACTCAAATGGCTAAATC
CATTACTAACATATACCAAAAAGACCATAAATCCTATACATGCCATATAACCAAATACATAAGCT
CAAAAGTACCAAAGTGGAAACTCGATAGTGTGATGTAACG
Found at i:74698462 original size:19 final size:18
Alignment explanation
Indices: 74698438--74698489 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
74698428 ATAGATACGA
*
74698438 TTTTTTCTTTATTTT-AT
1 TTTTTTTTTTATTTTAAT
74698455 TTTTTTTTTTAATTTTAAT
1 TTTTTTTTTT-ATTTTAAT
*
74698474 TTTGTTTGTTTATTTT
1 TTT-TTTTTTTATTTT
74698490 CATTCTCTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 9 0.30
18 5 0.17
19 10 0.33
20 6 0.20
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.81
Consensus pattern (18 bp):
TTTTTTTTTTATTTTAAT
Found at i:74706688 original size:8 final size:8
Alignment explanation
Indices: 74706648--74706690 Score: 61
Period size: 8 Copynumber: 5.4 Consensus size: 8
74706638 TACTTATTAA
74706648 ATAATAA-
1 ATAATAAT
74706655 ATAATAATT
1 ATAATAA-T
74706664 ATAATAAT
1 ATAATAAT
*
74706672 TTAATAAT
1 ATAATAAT
74706680 ATAATAAT
1 ATAATAAT
74706688 ATA
1 ATA
74706691 TATGTTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
7 7 0.22
8 18 0.56
9 7 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATAATAAT
Found at i:74706701 original size:25 final size:25
Alignment explanation
Indices: 74706648--74706709 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
74706638 TACTTATTAA
74706648 ATAATAAATAATAATTATAATAATT
1 ATAATAAATAATAATTATAATAATT
*
74706673 -TAATAATATAATAA-TAT-ATATGTT
1 ATAATAA-ATAATAATTATAATA-ATT
74706697 ATAATAAAGTAAT
1 ATAATAAA-TAAT
74706710 TAAATAAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
23 3 0.09
24 12 0.38
25 17 0.53
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.40
Consensus pattern (25 bp):
ATAATAAATAATAATTATAATAATT
Found at i:74706723 original size:9 final size:10
Alignment explanation
Indices: 74706711--74706748 Score: 55
Period size: 9 Copynumber: 4.1 Consensus size: 10
74706701 TAAAGTAATT
74706711 AAATA-AAAG
1 AAATAGAAAG
74706720 AAATA-AAAG
1 AAATAGAAAG
74706729 AAA-AGAAAG
1 AAATAGAAAG
74706738 AAATAGAAAG
1 AAATAGAAAG
74706748 A
1 A
74706749 GGATAGAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 1 0.04
9 19 0.70
10 7 0.26
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (10 bp):
AAATAGAAAG
Found at i:74707868 original size:20 final size:21
Alignment explanation
Indices: 74707829--74707875 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
74707819 TACGATGTTG
74707829 AAAGATATTAAATGATATGTA
1 AAAGATATTAAATGATATGTA
74707850 AAAGATA-TAAATTGA-ATGTA
1 AAAGATATTAAA-TGATATGTA
*
74707870 AGAGAT
1 AAAGAT
74707876 GAAACTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.30
Consensus pattern (21 bp):
AAAGATATTAAATGATATGTA
Found at i:74708496 original size:20 final size:20
Alignment explanation
Indices: 74708468--74708507 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
74708458 GGCCTGGCCC
*
74708468 CACGGGCATGTCCCAAGCCA
1 CACGAGCATGTCCCAAGCCA
*
74708488 CACGAGCATGTCCCAGGCCA
1 CACGAGCATGTCCCAAGCCA
74708508 TATGGGTGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (20 bp):
CACGAGCATGTCCCAAGCCA
Found at i:74712924 original size:36 final size:36
Alignment explanation
Indices: 74712903--74713022 Score: 195
Period size: 36 Copynumber: 3.3 Consensus size: 36
74712893 TTGTAATATT
*
74712903 GTTGTTGGTATACTGTTGCTTATGTTGTTATACATG
1 GTTGTTGGTATATTGTTGCTTATGTTGTTATACATG
74712939 GTTGTTGGTATATTGTTGCTTATGTTGTTATACATG
1 GTTGTTGGTATATTGTTGCTTATGTTGTTATACATG
* *
74712975 GCTGCTGGTATATTGTTGCTTATGTTGTTATACATG
1 GTTGTTGGTATATTGTTGCTTATGTTGTTATACATG
* *
74713011 GCTGCTGGTATA
1 GTTGTTGGTATA
74713023 CATGGCTAAC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 81 1.00
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.48
Consensus pattern (36 bp):
GTTGTTGGTATATTGTTGCTTATGTTGTTATACATG
Found at i:74713273 original size:23 final size:24
Alignment explanation
Indices: 74713228--74713273 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
74713218 AAAAATAGAA
* *
74713228 ACATTTGTATTTCTTAATTCTCAC
1 ACATTTGTATTTCTCAATACTCAC
74713252 ACATTTGT-TTTCTCAATACTCA
1 ACATTTGTATTTCTCAATACTCA
74713274 TATGTTAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.26, C:0.22, G:0.04, T:0.48
Consensus pattern (24 bp):
ACATTTGTATTTCTCAATACTCAC
Found at i:74714574 original size:2 final size:2
Alignment explanation
Indices: 74714569--74714672 Score: 172
Period size: 2 Copynumber: 52.0 Consensus size: 2
74714559 CACCAACAAT
* * *
74714569 CA CA CA TA CA CA CA CG CA CA CA CA CG CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
*
74714611 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
74714653 CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA
74714673 TCTAAAAAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 94 1.00
ACGTcount: A:0.48, C:0.48, G:0.02, T:0.02
Consensus pattern (2 bp):
CA
Found at i:74716645 original size:62 final size:62
Alignment explanation
Indices: 74716568--74716705 Score: 213
Period size: 62 Copynumber: 2.2 Consensus size: 62
74716558 CCATTTCTGT
* *
74716568 CAGACAATAACCAATACAAAAATAATTTAATACAAACACAACCATTTCTGTCACGCACATGG
1 CAGACAATAACCAATACAAAAATAATTTAATACAAACACAACAATTTCTGTCACGCACATGA
* * * *
74716630 CAGACAACAACCAATACAAAAATAATTTAATACAAGCACAACAATTTTTGTCATGCACATGA
1 CAGACAATAACCAATACAAAAATAATTTAATACAAACACAACAATTTCTGTCACGCACATGA
*
74716692 CAGATAATAACCAA
1 CAGACAATAACCAA
74716706 ACACTTTAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 68 1.00
ACGTcount: A:0.49, C:0.22, G:0.08, T:0.21
Consensus pattern (62 bp):
CAGACAATAACCAATACAAAAATAATTTAATACAAACACAACAATTTCTGTCACGCACATGA
Found at i:74717017 original size:6 final size:6
Alignment explanation
Indices: 74717002--74717053 Score: 68
Period size: 6 Copynumber: 8.7 Consensus size: 6
74716992 ATAAAACCCT
* * **
74717002 AAATCG AAATCA AAATCA AAATCA AAATCA AAATCA AATTTG AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
74717050 AAAT
1 AAAT
74717054 AACCCTAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.62, C:0.13, G:0.04, T:0.21
Consensus pattern (6 bp):
AAATCA
Found at i:74717023 original size:18 final size:18
Alignment explanation
Indices: 74717002--74717053 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
74716992 ATAAAACCCT
74717002 AAATCGAAATCAAAATCA
1 AAATCGAAATCAAAATCA
*
74717020 AAATCAAAATCAAAATCA
1 AAATCGAAATCAAAATCA
* *
74717038 AATTTGAAATCAAAAT
1 AAATCGAAATCAAAAT
74717054 AACCCTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.62, C:0.13, G:0.04, T:0.21
Consensus pattern (18 bp):
AAATCGAAATCAAAATCA
Found at i:74717754 original size:16 final size:16
Alignment explanation
Indices: 74717730--74717803 Score: 53
Period size: 16 Copynumber: 4.6 Consensus size: 16
74717720 AAATAATAAA
*
74717730 TAATTTAATCATATTT
1 TAATATAATCATATTT
*
74717746 TAATATAATTAT-TATT
1 TAATATAATCATAT-TT
* * *
74717762 TAATAAAAATAATA-TA
1 TAAT-ATAATCATATTT
*
74717778 TAATTTAATCATATTTT
1 TAATATAATCATA-TTT
74717795 TAATATAAT
1 TAATATAAT
74717804 TATTATTATA
Statistics
Matches: 43, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
15 7 0.16
16 21 0.49
17 15 0.35
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATATAATCATATTT
Found at i:74717773 original size:48 final size:50
Alignment explanation
Indices: 74717712--74717810 Score: 175
Period size: 49 Copynumber: 2.0 Consensus size: 50
74717702 TAAAAATAAC
74717712 TTAATAATAAATAATAAATAATTTAATCATA-TTTTAATATAATTATTAT
1 TTAATAATAAATAATAAATAATTTAATCATATTTTTAATATAATTATTAT
*
74717761 TTAATAA-AAATAATATATAATTTAATCATATTTTTAATATAATTATTAT
1 TTAATAATAAATAATAAATAATTTAATCATATTTTTAATATAATTATTAT
74717810 T
1 T
74717811 ATATTAAATT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
48 22 0.46
49 26 0.54
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (50 bp):
TTAATAATAAATAATAAATAATTTAATCATATTTTTAATATAATTATTAT
Found at i:74717845 original size:49 final size:48
Alignment explanation
Indices: 74717712--74717845 Score: 139
Period size: 49 Copynumber: 2.7 Consensus size: 48
74717702 TAAAAATAAC
*
74717712 TTAATAATAAATAATA-AATAATTTAATCATATTTTAATATAATTATTAT
1 TTAATAA-AAATAATATAA-AATTTAATAATATTTTAATATAATTATTAT
* *
74717761 TTAATAAAAATAATATATAATTTAATCATATTTTTAATATAATTATTA-
1 TTAATAAAAATAATATAAAATTTAATAATA-TTTTAATATAATTATTAT
* * *
74717809 TT-ATATTAAATTATATTAAAATGTTTATAATATTTTA
1 TTAATA-AAAATAATA-TAAAAT-TTAATAATATTTTA
74717846 TTTTAAATTA
Statistics
Matches: 74, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
47 3 0.04
48 29 0.39
49 35 0.47
50 7 0.09
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (48 bp):
TTAATAAAAATAATATAAAATTTAATAATATTTTAATATAATTATTAT
Found at i:74721773 original size:84 final size:85
Alignment explanation
Indices: 74721646--74721815 Score: 272
Period size: 84 Copynumber: 2.0 Consensus size: 85
74721636 ATTTCTGCTA
*
74721646 TTTGAGCTTAGGTTCAACACAAGCTCAACGAATGCAAACCAGCTGACATCAGTATCTAGTGATGT
1 TTTGAGCTTAGGTT-AACACAAGCTCAACGAATGCAAACCAGCTGACATCAATATCTAGTGATGT
74721711 ATACTCATCAAGATTTTTCGG
65 ATACTCATCAAGATTTTTCGG
*
74721732 TTTGAGCTTAGG-T-ACACAAGCTCCACGACATGCAAACCAGCTGACATCAATATCTAGTGATGT
1 TTTGAGCTTAGGTTAACACAAGCTCAACGA-ATGCAAACCAGCTGACATCAATATCTAGTGATGT
* *
74721795 ATACTCATCATGGTTTTTCGG
65 ATACTCATCAAGATTTTTCGG
74721816 CAATGGGCCA
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
83 14 0.18
84 52 0.66
85 1 0.01
86 12 0.15
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (85 bp):
TTTGAGCTTAGGTTAACACAAGCTCAACGAATGCAAACCAGCTGACATCAATATCTAGTGATGTA
TACTCATCAAGATTTTTCGG
Found at i:74723210 original size:18 final size:18
Alignment explanation
Indices: 74723183--74723249 Score: 57
Period size: 18 Copynumber: 3.6 Consensus size: 18
74723173 TACATAGAAT
74723183 ATTA-TACAATTATATAA
1 ATTATTACAATTATATAA
*
74723200 ATTATTACAATTTTCATAA
1 ATTATTACAATTAT-ATAA
* *
74723219 TGTTTTATACAATTAT-TCAA
1 -ATTAT-TACAATTATAT-AA
74723239 ATTATTACAAT
1 ATTATTACAAT
74723250 ATTTGTAATG
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
17 4 0.10
18 14 0.36
19 8 0.21
20 5 0.13
21 8 0.21
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.46
Consensus pattern (18 bp):
ATTATTACAATTATATAA
Found at i:74724928 original size:14 final size:15
Alignment explanation
Indices: 74724887--74724929 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
74724877 AATAAACATC
* *
74724887 TTAAATTAATTTAAA
1 TTAAATAAATTTCAA
74724902 TTAAATAATATTTCAA
1 TTAAATAA-ATTTCAA
74724918 TTAAA-AAATTTC
1 TTAAATAAATTTC
74724930 TCAACCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 5 0.20
15 9 0.36
16 11 0.44
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAAATAAATTTCAA
Found at i:74745014 original size:33 final size:33
Alignment explanation
Indices: 74744977--74745050 Score: 148
Period size: 33 Copynumber: 2.2 Consensus size: 33
74744967 ACAGAGAGTT
74744977 ACACGGGCTGAGGACACAGGCGTATCCCAAGCC
1 ACACGGGCTGAGGACACAGGCGTATCCCAAGCC
74745010 ACACGGGCTGAGGACACAGGCGTATCCCAAGCC
1 ACACGGGCTGAGGACACAGGCGTATCCCAAGCC
74745043 ACACGGGC
1 ACACGGGC
74745051 ATGTGCCACC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.27, C:0.34, G:0.31, T:0.08
Consensus pattern (33 bp):
ACACGGGCTGAGGACACAGGCGTATCCCAAGCC
Found at i:74747166 original size:37 final size:37
Alignment explanation
Indices: 74746995--74747574 Score: 525
Period size: 37 Copynumber: 15.7 Consensus size: 37
74746985 AATCTTATTC
* * * *
74746995 AGTATAATCAGTGGATAATGCTTGTTTGAGCAAGCATTTA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGC-A-C-TTTA
* * * * * * *
74747035 A-TATAATTAGTGGATATTGCTTGTTTGAGTAATTATTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAG-CACT-TTA
* * *
74747073 AGTAAAATCAGTAGATATTGCTCGTTTGAGCAC-CTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* *
74747109 AGTAGAATCAGTAGACATTGCTCGTTTGAGCACATTA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * *
74747146 AGTAGGATCAATAGATATTGCTCG-TTGAGCACTTTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * *
74747182 AGTAGAATCAGTAGACATTGCTCGTTTGAGCACATTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* *
74747219 AGTAGGATCAGTAGATATTGCTC-ATTGAGCACTTTA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * *
74747255 AGTAGAATCAATAGATATTCCTCGTTTGAGCACTTTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * * *
74747292 AGTAAAATCAGTAGACATTGCTTGTTTGAGCACATTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTA
** *
74747330 A-TAGGGTCAGTAGATATTGCTC-CTTGAGCACTTTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-A
*
74747366 A-TAGTATCAGTAGATATTGCTCGTTTGAGCACTTTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-A
* * * * *
74747403 A-TATAATCAGTAGATATTGCTTGTTTGACCATTTTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * *
74747439 AGTAGAATCAATTGACATTGCTCGTTTGAGCACATTT-
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTA
* * * * * *
74747476 AGCAGGAT-TGTAGATATTGCTTGTTTGAGCATTTTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
*
74747512 AGTAGAATTAGTAGATATTGCTCGTTTGAGCACTTTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-A
* *
74747550 A-TAGAACCAATAGATATTGCTCGTT
1 AGTAGAATCAGTAGATATTGCTCGTT
74747575 GAACACTGCA
Statistics
Matches: 444, Mismatches: 82, Indels: 31
0.80 0.15 0.06
Matches are distributed among these distances:
35 5 0.01
36 148 0.33
37 228 0.51
38 11 0.02
39 51 0.11
40 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (37 bp):
AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
Found at i:74747169 original size:73 final size:74
Alignment explanation
Indices: 74747073--74747574 Score: 550
Period size: 73 Copynumber: 6.9 Consensus size: 74
74747063 GTAATTATTC
* * *
74747073 AGTAAAATCAGTAGATATTGCTCGTTTGAGCAC-CTCAGTAGAATCAGTAGACATTGCTCGTTTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
*
74747137 AGCACATTA
66 AGCACTTTA
* * *
74747146 AGTAGGATCAATAGATATTGCTCG-TTGAGCACTTTCAGTAGAATCAGTAGACATTGCTCGTTTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
* *
74747210 AGCACATTC
66 AGCACTTTA
* * * * *
74747219 AGTAGGATCAGTAGATATTGCTC-ATTGAGCACTTTAAGTAGAATCAATAGATATTCCTCGTTTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
*
74747283 AGCACTTTT
66 AGCACTTTA
* * * * * ** *
74747292 AGTAAAATCAGTAGACATTGCTTGTTTGAGCACATTCAATAGGGTCAGTAGATATTGCTC-CTTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
74747356 AGCACTTTCA
66 AGCACTTT-A
* * * *
74747366 A-TAGTATCAGTAGATATTGCTCGTTTGAGCACTTTCAATATAATCAGTAGATATTGCTTGTTTG
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
* * *
74747430 ACCATTTTT
66 AGCACTTTA
* * * * * * *
74747439 AGTAGAATCAATTGACATTGCTCGTTTGAGCACATTT-AGCAGGAT-TGTAGATATTGCTTGTTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTCAGTAGAATCAGTAGATATTGCTCGTTT
* *
74747502 GAGCATTTTC
65 GAGCACTTTA
* * * *
74747512 AGTAGAATTAGTAGATATTGCTCGTTTGAGCACTTTCAATAGAACCAATAGATATTGCTCGTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTT
74747575 GAACACTGCA
Statistics
Matches: 359, Mismatches: 61, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
72 11 0.03
73 262 0.73
74 83 0.23
75 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (74 bp):
AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTG
AGCACTTTA
Found at i:74747306 original size:110 final size:110
Alignment explanation
Indices: 74747047--74747581 Score: 585
Period size: 110 Copynumber: 4.9 Consensus size: 110
74747037 ATAATTAGTG
* * * *
74747047 GATATTGCTTGTTTGAGTAATTATTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCAC-CTCAG
1 GATATTGCTCGTTTGAG-CACT-TTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCACATTCAG
* *
74747111 TAGAATCAGTAGACATTGCTCGTTTGAGCACATTAAGTAGGATCAATA
64 TAGAATCAGTAGATATTGCTC-TTTGAGCACTTTAAGTAGGATCAATA
* *
74747159 GATATTGCTCG-TTGAGCACTTTCAGTAGAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTA
1 GATATTGCTCGTTTGAGCACTTTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCACATTCAGTA
* * *
74747223 GGATCAGTAGATATTGCTCATTGAGCACTTTAAGTAGAATCAATA
66 GAATCAGTAGATATTGCTCTTTGAGCACTTTAAGTAGGATCAATA
* * * * *
74747268 GATATTCCTCGTTTGAGCACTTTTAGTAAAATCAGTAGACATTGCTTGTTTGAGCACATTCAATA
1 GATATTGCTCGTTTGAGCACTTTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCACATTCAGTA
** * * *
74747333 GGGTCAGTAGATATTGCTCCTTGAGCACTTTCAA-TAGTATCAGTA
66 GAATCAGTAGATATTGCTCTTTGAGCACTTT-AAGTAGGATCAATA
* * * * ** *
74747378 GATATTGCTCGTTTGAGCACTTTCAATATAATCAGTAGATATTGCTTGTTTGACCATTTTTAGTA
1 GATATTGCTCGTTTGAGCACTTTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCACATTCAGTA
* * * * **
74747443 GAATCAATTGACATTGCTCGTTTGAGCACATTT-AGCAGGAT-TGTA
66 GAATCAGTAGATATTGCTC-TTTGAGCAC-TTTAAGTAGGATCAATA
* * * * * *
74747488 GATATTGCTTGTTTGAGCATTTTCAGTAGAATTAGTAGATATTGCTCGTTTGAGCACTTTCAATA
1 GATATTGCTCGTTTGAGCACTTTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCACATTCAGTA
* * * *
74747553 GAACCAATAGATATTGCTCGTTGAACACT
66 GAATCAGTAGATATTGCTCTTTGAGCACT
74747582 GCAGTAGAAT
Statistics
Matches: 363, Mismatches: 54, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
108 1 0.00
109 74 0.20
110 256 0.71
111 19 0.05
112 13 0.04
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (110 bp):
GATATTGCTCGTTTGAGCACTTTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCACATTCAGTA
GAATCAGTAGATATTGCTCTTTGAGCACTTTAAGTAGGATCAATA
Done.