Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 242 of 438
Found at i:75032663 original size:25 final size:25
Alignment explanation
Indices: 75032629--75032677 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
75032619 TGTAGAGAAA
75032629 AAATTCTCTAAAGAAATTGTTTTAG
1 AAATTCTCTAAAGAAATTGTTTTAG
* * *
75032654 AAATTTTCTAAAGATATTTTTTTA
1 AAATTCTCTAAAGAAATTGTTTTA
75032678 TTTACAACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (25 bp):
AAATTCTCTAAAGAAATTGTTTTAG
Found at i:75037785 original size:39 final size:39
Alignment explanation
Indices: 75037731--75037874 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
75037721 GAATGTTCGA
75037731 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
75037770 GTGATATCCGGGCTAAGCCCAAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
75037809 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
75037848 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
75037875 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:75037818 original size:78 final size:79
Alignment explanation
Indices: 75037732--75037914 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
75037722 AATGTTCGAG
75037732 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCAAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCAAAGGC
75037796 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
75037810 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCAAAGGC
** *
75037875 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
75037889 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
75037915 GTTTGAATGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 54 0.57
79 31 0.33
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCAAAGGC
AATTGTGCGAGTTA
Found at i:75040459 original size:39 final size:39
Alignment explanation
Indices: 75040405--75040557 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
75040395 GAATGTTCGA
* *
75040405 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
75040444 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
75040483 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* **
75040522 GTGATATCCGGGTTAAGTCCCGAAGGCGTTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
75040558 GGTTACCATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 88 0.85
40 16 0.15
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:75040599 original size:79 final size:78
Alignment explanation
Indices: 75040412--75040586 Score: 197
Period size: 78 Copynumber: 2.2 Consensus size: 78
75040402 CGAGTGATAT
** * *
75040412 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
** *
75040477 CGAGCTATGATAT
66 CGAGCTACCATAA
** * **
75040490 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
* *
75040555 GCGGGTTACCATAA
65 GCGAGCTACCATAA
* *
75040569 CCGGGCTATGTCCGAAGG
1 CCGGGCTAAGCCCGAAGG
75040587 TGTTTGAACG
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
78 46 0.55
79 38 0.45
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGCTACCATAA
Found at i:75048462 original size:39 final size:39
Alignment explanation
Indices: 75048408--75048551 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
75048398 GAATGTTCGA
75048408 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
75048447 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
75048486 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
75048525 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
75048552 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:75048498 original size:78 final size:79
Alignment explanation
Indices: 75048409--75048591 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
75048399 AATGTTCGAG
75048409 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
75048473 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
75048487 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
75048552 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
75048566 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
75048592 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:75050226 original size:104 final size:105
Alignment explanation
Indices: 75050041--75050487 Score: 665
Period size: 104 Copynumber: 4.2 Consensus size: 105
75050031 AAATACAATT
* *
75050041 TAATTTAACAATAAAACAAAAATAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAA-T----TAAAATAAAAT
75050106 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
61 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
75050151 TAATTTAACAATAAAATAAAAGTAAACAAAATA-TTTTCGTGATTAAATTAAAATAAAATAAAAT
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
75050215 ATTTAAAATAAAACTTTAAATA-ATATTTAATTTAATTAGG
66 ATTTAAAATAAAACTTTAAATACA-ATTTAATTTAATTAGG
*
75050255 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTTATTAAA-T-AAATAAAA-ATAAA
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATA-AAA
*
75050317 TATTTAAAATAAAACTTTAAATATAATTTAATTTAATTAGG
65 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
* *
75050358 TGATTTAAAAATAAAATAAAAGTAGAA-AAAATA-TTTTCGTGATTAAATTAAAATAAAATAAAA
1 TAATTTAACAATAAAATAAAAGTA-AACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAA
75050421 TAACATATTCAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
65 T---AT-TT-AAAATAAAACTTTAAATACAATTTAATTTAATTAGG
*
75050467 TAATTTAAAAATAAAATAAAA
1 TAATTTAACAATAAAATAAAA
75050488 TATTTAAAAT
Statistics
Matches: 316, Mismatches: 8, Indels: 27
0.90 0.02 0.08
Matches are distributed among these distances:
102 14 0.04
103 80 0.25
104 103 0.33
105 14 0.04
107 2 0.01
108 3 0.01
109 69 0.22
110 31 0.10
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (105 bp):
TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
ATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
Found at i:75050374 original size:207 final size:215
Alignment explanation
Indices: 75050041--75050487 Score: 707
Period size: 207 Copynumber: 2.1 Consensus size: 215
75050031 AAATACAATT
*
75050041 TAATTTAACAATAAAACAAAAATAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
1 TAATTTAACAATAAAATAAAAATAAACAAAATATTTTTCGTGATTAAATTAAAAT--AATAAAAT
*
75050106 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAA
64 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAA
75050171 AGTA-AACAAAATATTTTCGTGATTAAATTAAAATAAAATAAAAT-AT-TT-AAAATAAAACTTT
129 AGTAGAA-AAAATATTTTCGTGATTAAATTAAAATAAAATAAAATAATATTCAAAATAAAACTTT
75050232 AAATA-ATATTTAATTTAATTAGG
193 AAATACA-ATTTAATTTAATTAGG
* *
75050255 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTTATTAAA-T-AAAT-A-AAAAT-A
1 TAATTTAACAATAAAATAAAAATAAACAAAATATTTTTCGTGATTAAATTAAAATAATAAAATAA
* *
75050315 AATATTTAAAATAAAACTTTAAATATAATTTAATTTAATTAGGTGATTTAAAAATAAAATAAAAG
66 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAG
75050380 TAGAAAAAATATTTTCGTGATTAAATTAAAATAAAATAAAATAACATATTCAAAATAAAACTTTA
131 TAGAAAAAATATTTTCGTGATTAAATTAAAATAAAATAAAAT-A-ATATTCAAAATAAAACTTTA
75050445 AATACAATTTAATTTAATTAGG
194 AATACAATTTAATTTAATTAGG
*
75050467 TAATTTAAAAATAAAATAAAA
1 TAATTTAACAATAAAATAAAA
75050488 TATTTAAAAT
Statistics
Matches: 219, Mismatches: 7, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
207 102 0.47
208 7 0.03
209 1 0.00
210 2 0.01
211 2 0.01
212 58 0.26
213 2 0.01
214 45 0.21
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (215 bp):
TAATTTAACAATAAAATAAAAATAAACAAAATATTTTTCGTGATTAAATTAAAATAATAAAATAA
AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAG
TAGAAAAAATATTTTCGTGATTAAATTAAAATAAAATAAAATAATATTCAAAATAAAACTTTAAA
TACAATTTAATTTAATTAGG
Found at i:75050461 original size:109 final size:109
Alignment explanation
Indices: 75050041--75050487 Score: 688
Period size: 109 Copynumber: 4.2 Consensus size: 109
75050031 AAATACAATT
* *
75050041 TAATTTAACAATAAAACAAAAATAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
75050106 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
66 -AAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
75050151 TAATTTAACAATAAAATAAAAGTAAACAAAATA-TTTTCGTGATTAAATTAAAATAAAAT---A-
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
75050211 AAATATTTAAAATAAAACTTTAAATA-ATATTTAATTTAATTAGG
66 AAATATTTAAAATAAAACTTTAAATACA-ATTTAATTTAATTAGG
*
75050255 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTTATTAAA-T-AAAT---A-AAAAT
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
*
75050314 AAATATTTAAAATAAAACTTTAAATATAATTTAATTTAATTAGG
66 AAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
* *
75050358 TGATTTAAAAATAAAATAAAAGTAGAA-AAAATA-TTTTCGTGATTAAATTAAAATAAAATAAAA
1 TAATTTAACAATAAAATAAAAGTA-AACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAA
*
75050421 TAACATATTCAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
65 TAA-ATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
*
75050467 TAATTTAAAAATAAAATAAAA
1 TAATTTAACAATAAAATAAAA
75050488 TATTTAAAAT
Statistics
Matches: 313, Mismatches: 9, Indels: 31
0.89 0.03 0.09
Matches are distributed among these distances:
100 1 0.00
102 14 0.04
103 76 0.24
104 83 0.27
105 13 0.04
106 1 0.00
107 1 0.00
108 7 0.02
109 86 0.27
110 31 0.10
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (109 bp):
TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
AAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
Found at i:75053560 original size:15 final size:16
Alignment explanation
Indices: 75053528--75053560 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
75053518 TTAATGCCTT
75053528 AACCCCTAGACACCTA
1 AACCCCTAGACACCTA
*
75053544 AACCCCTA-ACCCCTA
1 AACCCCTAGACACCTA
75053559 AA
1 AA
75053561 TCAAAAGCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.39, C:0.45, G:0.03, T:0.12
Consensus pattern (16 bp):
AACCCCTAGACACCTA
Found at i:75053582 original size:7 final size:7
Alignment explanation
Indices: 75053570--75053726 Score: 57
Period size: 7 Copynumber: 21.9 Consensus size: 7
75053560 ATCAAAAGCA
75053570 CTAAACC
1 CTAAACC
75053577 CTAAACC
1 CTAAACC
* ***
75053584 TTGTCCC
1 CTAAACC
*
75053591 CAAAACCC
1 CTAAAC-C
75053599 CTAAACC
1 CTAAACC
*
75053606 ATAAACC
1 CTAAACC
75053613 TCTAAACC
1 -CTAAACC
* **
75053621 ATATCCC
1 CTAAACC
*
75053628 CAAAACCC
1 CTAAA-CC
75053636 CTAAACC
1 CTAAACC
*
75053643 ATAAACC
1 CTAAACC
75053650 CTTAAACC
1 C-TAAACC
*
75053658 CTTAACC
1 CTAAACC
* *
75053665 CT-TATC
1 CTAAACC
*
75053671 CTTAACTC
1 CTAAAC-C
* * *
75053679 TTGACCC
1 CTAAACC
75053686 CTAAACC
1 CTAAACC
*
75053693 ATAAACC
1 CTAAACC
75053700 CTAAA-C
1 CTAAACC
*
75053706 CTCAACC
1 CTAAACC
75053713 CTTAAACC
1 C-TAAACC
*
75053721 ATAAAC
1 CTAAAC
75053727 AATAATCCCT
Statistics
Matches: 104, Mismatches: 38, Indels: 16
0.66 0.24 0.10
Matches are distributed among these distances:
6 9 0.09
7 61 0.59
8 34 0.33
ACGTcount: A:0.39, C:0.39, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:75053617 original size:15 final size:15
Alignment explanation
Indices: 75053593--75053623 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
75053583 CTTGTCCCCA
75053593 AAACCCCTAAACCAT
1 AAACCCCTAAACCAT
*
75053608 AAACCTCTAAACCAT
1 AAACCCCTAAACCAT
75053623 A
1 A
75053624 TCCCCAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.16
Consensus pattern (15 bp):
AAACCCCTAAACCAT
Found at i:75053620 original size:37 final size:36
Alignment explanation
Indices: 75053571--75053657 Score: 138
Period size: 37 Copynumber: 2.4 Consensus size: 36
75053561 TCAAAAGCAC
* *
75053571 TAAACCCTAAACCTTGTCCCCAAAACCCCTAAACCA
1 TAAACCCTAAACCATATCCCCAAAACCCCTAAACCA
75053607 TAAACCTCTAAACCATATCCCCAAAACCCCTAAACCA
1 TAAACC-CTAAACCATATCCCCAAAACCCCTAAACCA
75053644 TAAACCCTTAAACC
1 TAAACCC-TAAACC
75053658 CTTAACCCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 7 0.15
37 40 0.85
ACGTcount: A:0.41, C:0.40, G:0.01, T:0.17
Consensus pattern (36 bp):
TAAACCCTAAACCATATCCCCAAAACCCCTAAACCA
Found at i:75053659 original size:22 final size:21
Alignment explanation
Indices: 75053607--75053664 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
75053597 CCCTAAACCA
*
75053607 TAAACCTCTAAACCATATCCCC
1 TAAACC-CTAAACCATAACCCC
* *
75053629 AAAACCCCTAAACCATAAACCCT
1 TAAA-CCCTAAACCAT-AACCCC
*
75053652 TAAACCCTTAACC
1 TAAACCCTAAACC
75053665 CTTATCCTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
22 20 0.69
23 9 0.31
ACGTcount: A:0.41, C:0.40, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAACCCTAAACCATAACCCC
Found at i:75053797 original size:7 final size:7
Alignment explanation
Indices: 75053787--75053826 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
75053777 TCATAAACTA
75053787 TAAACCC
1 TAAACCC
75053794 TAAACCC
1 TAAACCC
*
75053801 TAAACCT
1 TAAACCC
75053808 TAAACCC
1 TAAACCC
*
75053815 ATAATCCC
1 -TAAACCC
75053823 TAAA
1 TAAA
75053827 TCCATAGTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 22 0.79
8 6 0.21
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:75053804 original size:14 final size:15
Alignment explanation
Indices: 75053786--75053832 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
75053776 CTCATAAACT
75053786 ATAAACCCTAAACCC
1 ATAAACCCTAAACCC
*
75053801 -TAAACCTTAAACCC
1 ATAAACCCTAAACCC
* *
75053815 ATAATCCCTAAATCC
1 ATAAACCCTAAACCC
75053830 ATA
1 ATA
75053833 GTCCATAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 13 0.48
15 14 0.52
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
ATAAACCCTAAACCC
Found at i:75053832 original size:15 final size:14
Alignment explanation
Indices: 75053597--75053726 Score: 66
Period size: 15 Copynumber: 9.1 Consensus size: 14
75053587 TCCCCAAAAC
75053597 CCCTAAACCATAAA
1 CCCTAAACCATAAA
**
75053611 CCTCTAAACCATATC
1 CC-CTAAACCATAAA
* *
75053626 CCCAAAACCCCTAAA
1 CCCTAAA-CCATAAA
* *
75053641 CCATAAACCCTTAAA
1 CCCTAAA-CCATAAA
* * *
75053656 CCCTTAACCCT-TA
1 CCCTAAACCATAAA
* * * * *
75053669 TCCTTAACTCTTGAC
1 CCCTAAAC-CATAAA
75053684 CCCTAAACCATAAA
1 CCCTAAACCATAAA
*
75053698 CCCTAAACC-TCAA
1 CCCTAAACCATAAA
75053711 CCCTTAAACCATAAA
1 CCC-TAAACCATAAA
75053726 C
1 C
75053727 AATAATCCCT
Statistics
Matches: 86, Mismatches: 24, Indels: 11
0.71 0.20 0.09
Matches are distributed among these distances:
13 14 0.16
14 29 0.34
15 43 0.50
ACGTcount: A:0.39, C:0.39, G:0.01, T:0.21
Consensus pattern (14 bp):
CCCTAAACCATAAA
Found at i:75056219 original size:71 final size:71
Alignment explanation
Indices: 75056135--75056298 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
75056125 CGATTTGTCT
75056135 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75056200 CTTTCA
66 CTTTCA
75056206 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75056271 CTTTCA
66 CTTTCA
75056277 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
75056299 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:75056336 original size:71 final size:70
Alignment explanation
Indices: 75056135--75056332 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
75056125 CGATTTGTCT
* * * *
75056135 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75056200 CTTTCA
65 CTTTCA
* * * *
75056206 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75056271 CTTTCA
65 CTTTCA
* *
75056277 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
75056333 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:75063322 original size:71 final size:71
Alignment explanation
Indices: 75063238--75063401 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
75063228 CGATTTGTCT
75063238 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75063303 CTTTCA
66 CTTTCA
75063309 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75063374 CTTTCA
66 CTTTCA
75063380 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
75063402 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:75063439 original size:71 final size:70
Alignment explanation
Indices: 75063238--75063435 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
75063228 CGATTTGTCT
* * * *
75063238 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75063303 CTTTCA
65 CTTTCA
* * * *
75063309 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75063374 CTTTCA
65 CTTTCA
* *
75063380 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
75063436 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:75067584 original size:26 final size:26
Alignment explanation
Indices: 75067555--75067659 Score: 156
Period size: 26 Copynumber: 4.0 Consensus size: 26
75067545 TGGTACAAAT
* **
75067555 TGATAAAGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
75067581 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75067607 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75067633 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75067659 T
1 T
75067660 TATGGGCATT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75070380 original size:16 final size:16
Alignment explanation
Indices: 75070350--75070379 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75070340 GGGTTTACAA
75070350 AAAAACAAAGATTTTC
1 AAAAACAAAGATTTTC
75070366 AAAAACAAA-ATTTT
1 AAAAACAAAGATTTT
75070380 TTTTGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.27
Consensus pattern (16 bp):
AAAAACAAAGATTTTC
Found at i:75074634 original size:26 final size:26
Alignment explanation
Indices: 75074605--75074686 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
75074595 TGGTACAAAT
*
75074605 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
75074631 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
75074657 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
75074683 TGAT
1 TGAT
75074687 GGGCATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:75080413 original size:124 final size:122
Alignment explanation
Indices: 75080193--75080414 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
75080183 GAATTATGTG
* * * *
75080193 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
75080258 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
75080315 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
75080379 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
75080415 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:75080458 original size:40 final size:40
Alignment explanation
Indices: 75080373--75080523 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
75080363 AATTGAATGA
* * * *
75080373 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
75080413 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
75080454 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
75080493 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
75080524 ACGTGGTTGT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:75080507 original size:80 final size:80
Alignment explanation
Indices: 75080374--75080523 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
75080364 ATTGAATGAT
* *
75080374 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
75080439 TGTGCTAGTGGCTAC
66 TGTGCTAGTGGCTAC
* * * *
75080454 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
75080517 TTTGTGC
64 ATTGTGC
75080524 ACGTGGTTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 4 0.07
80 57 0.93
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCTAC
Found at i:75082705 original size:42 final size:43
Alignment explanation
Indices: 75082601--75082710 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 43
75082591 TTTAGAAATT
* * *
75082601 CGAGCTCATTGAGCGGTCCGAGTTCGTGATATATGTGAGAATT
1 CGAGCTCATTGAGAGGTCCAAGTTCGTGATATATGTGAGAATC
* * * * * *
75082644 CGAACTTATTGAGTGGTCCAAGTTCGTGATCTCTGTG-GCATC
1 CGAGCTCATTGAGAGGTCCAAGTTCGTGATATATGTGAGAATC
*
75082686 CGAGCTCGTTGAGAGGTCCAAGTTC
1 CGAGCTCATTGAGAGGTCCAAGTTC
75082711 ATCGCATCCA
Statistics
Matches: 55, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 24 0.44
43 31 0.56
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (43 bp):
CGAGCTCATTGAGAGGTCCAAGTTCGTGATATATGTGAGAATC
Found at i:75084717 original size:14 final size:14
Alignment explanation
Indices: 75084698--75084725 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75084688 TGACCGGTCA
75084698 ATTTTTGTTTCTTC
1 ATTTTTGTTTCTTC
75084712 ATTTTTGTTTCTTC
1 ATTTTTGTTTCTTC
75084726 TTTAATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.07, T:0.71
Consensus pattern (14 bp):
ATTTTTGTTTCTTC
Found at i:75084772 original size:17 final size:17
Alignment explanation
Indices: 75084752--75084799 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
75084742 TTTTTTGATC
*
75084752 TTTTATATTTTTAAGTT
1 TTTTATATTTTTAAATT
75084769 TTTTATAATTTTCTAAATT
1 TTTTAT-ATTTT-TAAATT
75084788 TTATTAT-TTTTT
1 TT-TTATATTTTT
75084800 GTAATCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 7 0.26
18 9 0.33
19 7 0.26
20 4 0.15
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (17 bp):
TTTTATATTTTTAAATT
Found at i:75085588 original size:18 final size:18
Alignment explanation
Indices: 75085552--75085586 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75085542 TATTTTAAAA
75085552 ATATTTATAATAATTTTT
1 ATATTTATAATAATTTTT
*
75085570 ATATTTTTAA-AATTTTT
1 ATATTTATAATAATTTTT
75085587 TAGAATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATTTATAATAATTTTT
Found at i:75088635 original size:15 final size:15
Alignment explanation
Indices: 75088581--75088635 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 15
75088571 TTGCCTGTGT
75088581 TTTTTAGGGTTAGGG
1 TTTTTAGGGTTAGGG
*
75088596 TTTTTTAGGGTTTA--A
1 -TTTTTAGGG-TTAGGG
75088611 TTGATTTAGGGTTAGGG
1 TT--TTTAGGGTTAGGG
75088628 TTTTTAGG
1 TTTTTAGG
75088636 ATTTAAGGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
14 2 0.06
15 9 0.28
16 16 0.50
17 5 0.16
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (15 bp):
TTTTTAGGGTTAGGG
Found at i:75088658 original size:23 final size:22
Alignment explanation
Indices: 75088613--75088664 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
75088603 GGGTTTAATT
*
75088613 GATTTAGGGTTAGGGTTTTTAG
1 GATTTAAGGTTAGGGTTTTTAG
75088635 GATTTAAGGTTAGGGTTTTTTAG
1 GATTTAAGGTTAGGG-TTTTTAG
*
75088658 GGTTTAA
1 GATTTAA
75088665 AATTTAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 14 0.52
23 13 0.48
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (22 bp):
GATTTAAGGTTAGGGTTTTTAG
Found at i:75090367 original size:48 final size:45
Alignment explanation
Indices: 75090281--75090415 Score: 162
Period size: 48 Copynumber: 2.8 Consensus size: 45
75090271 AATGCAAACA
* **
75090281 TCATAAATGAAAAAAAATCAAGCAGTATTGAAATTTTAATTATAATT
1 TCATAAATGAAAAAATATCAAATAGTATTGAAA-TTTAATTA-AATT
75090328 TCATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATT
1 TCATAAATGAA-AAAATATCAAATAGTATTG-AAATTTAATTAAATT
* *
75090375 TACATAAATTAAAAAAATATCGAATAGTATTGAAAATTTAA
1 T-CATAAA-TGAAAAAATATCAAATAGTATTG-AAATTTAA
75090416 AATTATCACT
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
47 16 0.21
48 56 0.72
49 6 0.08
ACGTcount: A:0.53, C:0.06, G:0.07, T:0.34
Consensus pattern (45 bp):
TCATAAATGAAAAAATATCAAATAGTATTGAAATTTAATTAAATT
Found at i:75090567 original size:11 final size:11
Alignment explanation
Indices: 75090548--75090644 Score: 72
Period size: 11 Copynumber: 8.9 Consensus size: 11
75090538 TTTTAAACAA
*
75090548 AGAAATTTGAT
1 AGAATTTTGAT
75090559 AGAATTTTGA-
1 AGAATTTTGAT
75090569 AGAATTTTGAT
1 AGAATTTTGAT
*
75090580 AGAATTTTGAG
1 AGAATTTTGAT
* **
75090591 AAAATTTCAAT
1 AGAATTTTGAT
*
75090602 -GAAATTTGAT
1 AGAATTTTGAT
* *
75090612 AGATTTTTGAAA
1 AGAATTTTG-AT
* *
75090624 AGAATATTGAA
1 AGAATTTTGAT
*
75090635 AGAATGTTGA
1 AGAATTTTGA
75090645 GAATTATGAG
Statistics
Matches: 67, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.24
11 43 0.64
12 8 0.12
ACGTcount: A:0.43, C:0.01, G:0.19, T:0.37
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:75090572 original size:21 final size:21
Alignment explanation
Indices: 75090547--75090593 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
75090537 ATTTTAAACA
75090547 AAGAAATTTGATAGAATTTTG
1 AAGAAATTTGATAGAATTTTG
*
75090568 AAGAATTTTGATAGAATTTTG
1 AAGAAATTTGATAGAATTTTG
75090589 -AGAAA
1 AAGAAA
75090594 ATTTCAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.36
Consensus pattern (21 bp):
AAGAAATTTGATAGAATTTTG
Found at i:75090597 original size:32 final size:32
Alignment explanation
Indices: 75090561--75090660 Score: 80
Period size: 32 Copynumber: 3.1 Consensus size: 32
75090551 AATTTGATAG
75090561 AATTTTGAAGAATTTTGATAGAATTTTGAGAA
1 AATTTTGAAGAATTTTGATAGAATTTTGAGAA
* * * *
75090593 AA-TTTCAATGAAATTTGATAGATTTTTGAAAA
1 AATTTTGAA-GAATTTTGATAGAATTTTGAGAA
* * * *
75090625 GAATATTGAAAGAATGTTG--AGAATTATGAGAG
1 -AATTTTG-AAGAATTTTGATAGAATTTTGAGAA
75090657 AATT
1 AATT
75090661 GTATGAAAAA
Statistics
Matches: 51, Mismatches: 13, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
31 8 0.16
32 31 0.61
33 2 0.04
34 8 0.16
35 2 0.04
ACGTcount: A:0.43, C:0.01, G:0.19, T:0.37
Consensus pattern (32 bp):
AATTTTGAAGAATTTTGATAGAATTTTGAGAA
Found at i:75093957 original size:29 final size:31
Alignment explanation
Indices: 75093925--75093989 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 31
75093915 AACTCTCAAA
* **
75093925 CCTTTTTACTTTCCTTC-AAAACTTTTAC-C
1 CCTTTTCACTTTCCCCCTAAAACTTTTACTC
*
75093954 CCTTCTCACTTTCCCCCTAAAACTTTTACTC
1 CCTTTTCACTTTCCCCCTAAAACTTTTACTC
75093985 CCTTT
1 CCTTT
75093990 CCATCACAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
29 13 0.45
30 11 0.38
31 5 0.17
ACGTcount: A:0.18, C:0.37, G:0.00, T:0.45
Consensus pattern (31 bp):
CCTTTTCACTTTCCCCCTAAAACTTTTACTC
Found at i:75098871 original size:25 final size:25
Alignment explanation
Indices: 75098843--75098899 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
75098833 TTGGGGCATG
*
75098843 TGATTTTTAAAGATGGTATCCGAGT
1 TGATTTTCAAAGATGGTATCCGAGT
*
75098868 TGATTTTCGAAGATGGTATCCGAGT
1 TGATTTTCAAAGATGGTATCCGAGT
*
75098893 AGATTTT
1 TGATTTT
75098900 GGTAAAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.26, C:0.09, G:0.25, T:0.40
Consensus pattern (25 bp):
TGATTTTCAAAGATGGTATCCGAGT
Found at i:75100584 original size:19 final size:21
Alignment explanation
Indices: 75100545--75100596 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
75100535 GGTAGTGTAC
*
75100545 CTCAGTCATACAGGCGTGTGT
1 CTCAGTCACACAGGCGTGTGT
*
75100566 CTCAGTCACACAGGTGTGTGT
1 CTCAGTCACACAGGCGTGTGT
75100587 CTCAGTCACA
1 CTCAGTCACA
75100597 TGATATTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (21 bp):
CTCAGTCACACAGGCGTGTGT
Found at i:75105041 original size:40 final size:39
Alignment explanation
Indices: 75104914--75105043 Score: 165
Period size: 40 Copynumber: 3.3 Consensus size: 39
75104904 ATGCTGGAAA
*
75104914 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* *
75104954 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GTGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTG--G
*
75104994 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
75105034 TTATATCCGG
1 TTATATCCGG
75105044 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
38 3 0.04
39 3 0.04
40 69 0.88
42 3 0.04
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:75111422 original size:71 final size:71
Alignment explanation
Indices: 75111338--75111501 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
75111328 CGATTTGTCT
75111338 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
75111403 CTTTCA
66 CTTTCA
* *
75111409 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
75111474 CTTTCA
66 CTTTCA
75111480 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
75111502 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:75111539 original size:71 final size:70
Alignment explanation
Indices: 75111338--75111535 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
75111328 CGATTTGTCT
* * * * *
75111338 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75111403 CTTTCA
65 CTTTCA
* * * *
75111409 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75111474 CTTTCA
65 CTTTCA
* *
75111480 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
75111536 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:75114168 original size:71 final size:71
Alignment explanation
Indices: 75114084--75114247 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
75114074 CGATTTGTCT
75114084 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
75114149 CTTTCA
66 CTTTCA
* *
75114155 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
75114220 CTTTCA
66 CTTTCA
75114226 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
75114248 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:75114285 original size:71 final size:70
Alignment explanation
Indices: 75114084--75114281 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
75114074 CGATTTGTCT
* * * * *
75114084 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75114149 CTTTCA
65 CTTTCA
* * * *
75114155 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75114220 CTTTCA
65 CTTTCA
* *
75114226 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
75114282 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:75116884 original size:40 final size:40
Alignment explanation
Indices: 75116757--75116886 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
75116747 ATGCTGGAAA
*
75116757 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTA-GTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGG
* * * *
75116797 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGCGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
*
75116837 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
75116877 TTATATCCGG
1 TTATATCCGG
75116887 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
Found at i:75119561 original size:42 final size:42
Alignment explanation
Indices: 75119501--75119662 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 42
75119491 CATTTTCTCG
* * *
75119501 ATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT-A
1 ATGCCATAGCTCAGCTATGGTCTTACACATATTCACAT-ATCA
* * *
75119543 ATGTCATAGCTCAGCTATGGTCTTACACATATTCATATATCG
1 ATGCCATAGCTCAGCTATGGTCTTACACATATTCACATATCA
* * * *
75119585 ATGCCATAGCCCAGCTATGATCTTACACGTAATCACATATCACAAATCG
1 ATGCCATAGCTCAGCTATGGTCTTACAC---AT---AT-TCACATATCA
*
75119634 ATGCCATAGCCCAGCTATGGTCTTACACA
1 ATGCCATAGCTCAGCTATGGTCTTACACA
75119663 GATCACAGAT
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
41 2 0.02
42 58 0.58
45 2 0.02
46 1 0.01
48 2 0.02
49 35 0.35
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCTCAGCTATGGTCTTACACATATTCACATATCA
Found at i:75119687 original size:48 final size:49
Alignment explanation
Indices: 75119568--75119873 Score: 259
Period size: 48 Copynumber: 6.2 Consensus size: 49
75119558 TATGGTCTTA
* *
75119568 CACATATTCATATATCGATGCCATAGCCCAGCTATGATCTTACAC-GTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAG-AAT
*
75119618 CACATATCACAAATCGATGCCATAGCCCAGCTATGGTCTTACACAG-AT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
* * * *
75119666 CACAGATCACATATTGATGCCATAGCCCAGCTATGTTCTTACA-TGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
* * * * * *
75119714 CACATATCTCACTA---ATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACA-TATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
* * * * * * *
75119761 CATATATCAC--ATCGATGCCATATCCTAGATATGGTCTTATACGGAAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
* * * * *
75119808 CACATAATTACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATATGAAAAT
1 CACAT-ATCACA--TAT-CGATGCCATAGCCCAGCTATGGTCTTACA-CAGAAT
75119862 CACATATCACAT
1 CACATATCACAT
75119874 GTTGCCATGG
Statistics
Matches: 209, Mismatches: 33, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
44 1 0.00
46 23 0.11
47 45 0.22
48 56 0.27
49 37 0.18
50 7 0.03
51 1 0.00
52 1 0.00
53 31 0.15
54 7 0.03
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
Found at i:75119812 original size:94 final size:93
Alignment explanation
Indices: 75119581--75119813 Score: 216
Period size: 94 Copynumber: 2.5 Consensus size: 93
75119571 ATATTCATAT
* * * * * * *
75119581 ATCGATGCCATAGCCCAGCTATGATCTTACACGTAATCACATATCACAAATCGATGCCATAGCCC
1 ATCGATGCCATAGCCCAGATATGGTCTTACA-GGAAGCACATATCTC-ACT-AATGCCATAGCCC
* *
75119646 AGCTATGGTCTTACACAGATCACAGATCACA
63 AGATATGGTCTTACACAGAGCACAGATCACA
* * * * * *
75119677 TATTGATGCCATAGCCCAGCTATGTTCTTACATGAATCACATATCTCACTAATGCCATATCCCAG
1 -ATCGATGCCATAGCCCAGATATGGTCTTACAGGAAGCACATATCTCACTAATGCCATAGCCCAG
* * *
75119742 ATATGGTCTTATACAGTAGCATATATCAC-
65 ATATGGTCTTACACAG-AGCACAGATCACA
* * *
75119771 ATCGATGCCATATCCTAGATATGGTCTTATACGGAAGCACATA
1 ATCGATGCCATAGCCCAGATATGGTCTTACA-GGAAGCACATA
75119814 ATTACATCTC
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
93 25 0.22
94 36 0.32
95 11 0.10
96 12 0.11
97 29 0.26
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (93 bp):
ATCGATGCCATAGCCCAGATATGGTCTTACAGGAAGCACATATCTCACTAATGCCATAGCCCAGA
TATGGTCTTACACAGAGCACAGATCACA
Found at i:75133874 original size:93 final size:93
Alignment explanation
Indices: 75133762--75133933 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75133752 GCCCATAAGT
* *
75133762 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75133827 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75133855 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75133920 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
75133934 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75133929 original size:46 final size:46
Alignment explanation
Indices: 75133754--75133929 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75133744 TGTAACCCGC
* * *
75133754 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
75133800 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
75133850 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
75133893 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75133930 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:75140883 original size:2 final size:2
Alignment explanation
Indices: 75140873--75140903 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
75140863 AATGTTAGAA
75140873 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75140904 TATTTTTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75141555 original size:13 final size:13
Alignment explanation
Indices: 75141537--75141562 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75141527 TTTCATTCCT
75141537 TCATCTTTGTTTC
1 TCATCTTTGTTTC
75141550 TCATCTTTGTTTC
1 TCATCTTTGTTTC
75141563 GCAAATAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.08, T:0.62
Consensus pattern (13 bp):
TCATCTTTGTTTC
Found at i:75144041 original size:17 final size:18
Alignment explanation
Indices: 75143989--75144045 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
75143979 TAATTAGGTT
*
75143989 AAATAATTAAATTAAATAGG
1 AAAT-ATTAAAATAAATA-G
*
75144009 AAATA-TCAAATAAA-ATG
1 AAATATTAAAATAAATA-G
75144026 AAATATTAAAATAAATAG
1 AAATATTAAAATAAATAG
75144044 AA
1 AA
75144046 TTAAAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 7 0.23
18 18 0.58
19 2 0.06
20 4 0.13
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (18 bp):
AAATATTAAAATAAATAG
Found at i:75144069 original size:21 final size:22
Alignment explanation
Indices: 75144044--75144089 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 22
75144034 AAATAAATAG
75144044 AATTAAAAATTAAG-ATTT-AGA
1 AATT-AAAATTAAGAATTTGAGA
*
75144065 AATTAAAATTAGGAATTTGAGA
1 AATTAAAATTAAGAATTTGAGA
75144087 AAT
1 AAT
75144090 AATTCAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 8 0.36
22 6 0.27
ACGTcount: A:0.54, C:0.00, G:0.13, T:0.33
Consensus pattern (22 bp):
AATTAAAATTAAGAATTTGAGA
Found at i:75147336 original size:22 final size:23
Alignment explanation
Indices: 75147308--75147357 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
75147298 TGATTATGAA
*
75147308 ACATAT-AGAGGACTCTATCACT
1 ACATATAAGAGGACTCTATCACC
*
75147330 ACATATAAGTGGACTCTATCACC
1 ACATATAAGAGGACTCTATCACC
75147353 ACATA
1 ACATA
75147358 GTGGATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (23 bp):
ACATATAAGAGGACTCTATCACC
Found at i:75147976 original size:17 final size:18
Alignment explanation
Indices: 75147956--75147993 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
75147946 TTTGACAAGT
* *
75147956 TAACATTGTTCAC-AATA
1 TAACATGGTACACAAATA
75147973 TAACATGGTACACAAATA
1 TAACATGGTACACAAATA
75147991 TAA
1 TAA
75147994 TTGGCTTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.47, C:0.16, G:0.08, T:0.29
Consensus pattern (18 bp):
TAACATGGTACACAAATA
Found at i:75148337 original size:29 final size:28
Alignment explanation
Indices: 75148304--75148368 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 28
75148294 TATATATTAT
* *
75148304 ATATATTTTATATATAATAAAATCCACAC
1 ATATATATTATATATAACAAAA-CCACAC
* *
75148333 ATATATATTATATATAGCAAAACCACAT
1 ATATATATTATATATAACAAAACCACAC
75148361 ATATATAT
1 ATATATAT
75148369 GTACTATGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 13 0.41
29 19 0.59
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (28 bp):
ATATATATTATATATAACAAAACCACAC
Found at i:75148462 original size:28 final size:24
Alignment explanation
Indices: 75148431--75148500 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 24
75148421 ACACCGAAAT
75148431 ATATATTATATATAACACCCTTGCATGC
1 ATATATTATATATAA-ACCC-TG-AT-C
75148459 ATATA-TATATTATAAACCCTGATC
1 ATATATTATA-TATAAACCCTGATC
75148483 ATTTATATTATATATAAA
1 A--TATATTATATATAAA
75148501 TAACAAAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
24 2 0.05
25 2 0.05
26 12 0.32
27 12 0.32
28 10 0.26
ACGTcount: A:0.41, C:0.14, G:0.04, T:0.40
Consensus pattern (24 bp):
ATATATTATATATAAACCCTGATC
Found at i:75148579 original size:18 final size:19
Alignment explanation
Indices: 75148543--75148580 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
75148533 ACACACATAC
*
75148543 CTTTTAGTACTTTAACTCA
1 CTTTTAATACTTTAACTCA
*
75148562 CTTTTAATA-TTTAGCTCA
1 CTTTTAATACTTTAACTCA
75148580 C
1 C
75148581 ACACAAACGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.47
Consensus pattern (19 bp):
CTTTTAATACTTTAACTCA
Found at i:75155414 original size:47 final size:48
Alignment explanation
Indices: 75155306--75155415 Score: 150
Period size: 48 Copynumber: 2.3 Consensus size: 48
75155296 GTGCGGTTGA
* * * * *
75155306 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTCTGGAGAGGAGT
1 TACCTTGATTTGGTTACGGGACATGATATAGGTACTCTCGAGAGAAGT
* *
75155354 TACCTTGATTTGGTTACGGGACATGGTATAGGTACTC-CGAGATAAGT
1 TACCTTGATTTGGTTACGGGACATGATATAGGTACTCTCGAGAGAAGT
75155401 TACCTTGATTTGGTT
1 TACCTTGATTTGGTT
75155416 TTAGACCATG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 22 0.40
48 33 0.60
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.35
Consensus pattern (48 bp):
TACCTTGATTTGGTTACGGGACATGATATAGGTACTCTCGAGAGAAGT
Found at i:75162473 original size:28 final size:30
Alignment explanation
Indices: 75162427--75162505 Score: 108
Period size: 28 Copynumber: 2.7 Consensus size: 30
75162417 TACGTGGGTG
* *
75162427 ATTATACATATATTATATATGCATGGCTTT
1 ATTATATATATAATATATATGCATGGCTTT
*
75162457 ATT-T-TATATAATATATATGCATGGTTTT
1 ATTATATATATAATATATATGCATGGCTTT
*
75162485 ATTATATGTATAATATATATG
1 ATTATATATATAATATATATG
75162506 GGTATGGTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 24 0.56
29 2 0.05
30 17 0.40
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.49
Consensus pattern (30 bp):
ATTATATATATAATATATATGCATGGCTTT
Found at i:75162529 original size:32 final size:30
Alignment explanation
Indices: 75162398--75162529 Score: 103
Period size: 30 Copynumber: 4.4 Consensus size: 30
75162388 TATATATGTG
* * * *
75162398 TTATATATATACGTATATATACGTGG-GTGA
1 TTATATATATA-ATATATATGCATGGTTTGA
* *
75162428 TTATACATATATTATATATGCATGGCTTT-A
1 TTATATATATAATATATATGCATGG-TTTGA
*
75162458 TT-T-TATATAATATATATGCATGGTTTTA
1 TTATATATATAATATATATGCATGGTTTGA
* *
75162486 TTATATGTATAATATATATGGGTATGGTTTGA
1 TTATATATATAATATATAT--GCATGGTTTGA
75162518 -TATAATATATAA
1 TTAT-ATATATAA
75162530 ATTCATGAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
27 3 0.04
28 21 0.25
29 13 0.16
30 26 0.31
31 4 0.05
32 16 0.19
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (30 bp):
TTATATATATAATATATATGCATGGTTTGA
Found at i:75179482 original size:47 final size:47
Alignment explanation
Indices: 75179413--75179514 Score: 177
Period size: 47 Copynumber: 2.2 Consensus size: 47
75179403 AGCTTAGCTT
* * *
75179413 ATCATTGGTGGCTATGGCATAAGGTTCGGTCTCAGCTGGTCATAACC
1 ATCATCGGTGGCTATGGCATAAGGTTCGGTATCAGCCGGTCATAACC
75179460 ATCATCGGTGGCTATGGCATAAGGTTCGGTATCAGCCGGTCATAACC
1 ATCATCGGTGGCTATGGCATAAGGTTCGGTATCAGCCGGTCATAACC
75179507 ATCATCGG
1 ATCATCGG
75179515 AACCAATGCC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (47 bp):
ATCATCGGTGGCTATGGCATAAGGTTCGGTATCAGCCGGTCATAACC
Found at i:75182721 original size:19 final size:19
Alignment explanation
Indices: 75182697--75182736 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
75182687 ATAGTTCAAA
75182697 ACGAGTTAGGAGTTATCAC
1 ACGAGTTAGGAGTTATCAC
75182716 ACGAGTTAGGAGTTATCAC
1 ACGAGTTAGGAGTTATCAC
75182735 AC
1 AC
75182737 TATCATAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (19 bp):
ACGAGTTAGGAGTTATCAC
Found at i:75186599 original size:28 final size:29
Alignment explanation
Indices: 75186559--75186615 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 29
75186549 GAATGATATG
*
75186559 ATTTTGATGATATTGT-TATG-ATGATGAAA
1 ATTTTGATCATA-TGTATATGTATGA-GAAA
75186588 ATTTTG-TCATATGTATATGTATGAGAAA
1 ATTTTGATCATATGTATATGTATGAGAAA
75186616 GTCGAGTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 3 0.12
28 12 0.48
29 10 0.40
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (29 bp):
ATTTTGATCATATGTATATGTATGAGAAA
Found at i:75187476 original size:15 final size:15
Alignment explanation
Indices: 75187456--75187520 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
75187446 GTATCTTGGG
75187456 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75187471 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
75187486 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
*
75187501 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75187515 TTTCTT
1 TTTCTT
75187521 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 12 0.29
15 25 0.61
16 4 0.10
ACGTcount: A:0.11, C:0.15, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75187488 original size:30 final size:31
Alignment explanation
Indices: 75187452--75187520 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
75187442 TATCGTATCT
* *
75187452 TGGGTTTCTTTATTC-TGGATTTCTTTATTC
1 TGGGTTTCTTCAATCTTGGATTTCTTTATTC
75187482 TGGGTTTC-TCAATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCAATCTTGGATTTCTTTATTC
*
75187512 -GGTTTTCTT
1 TGGGTTTCTT
75187521 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.10, C:0.14, G:0.17, T:0.58
Consensus pattern (31 bp):
TGGGTTTCTTCAATCTTGGATTTCTTTATTC
Found at i:75189211 original size:12 final size:12
Alignment explanation
Indices: 75189194--75189230 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
75189184 GTCGAAACCA
75189194 TTGCTTTTCCTT
1 TTGCTTTTCCTT
75189206 TTGCTTTTCCTT
1 TTGCTTTTCCTT
75189218 TTGCTTTTCCTT
1 TTGCTTTTCCTT
75189230 T
1 T
75189231 ACATTAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.08, T:0.68
Consensus pattern (12 bp):
TTGCTTTTCCTT
Found at i:75189212 original size:6 final size:6
Alignment explanation
Indices: 75189197--75189230 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
75189187 GAAACCATTG
* *
75189197 CTTTTC CTTTTG CTTTTC CTTTTG CTTTTC CTTT
1 CTTTTC CTTTTC CTTTTC CTTTTC CTTTTC CTTT
75189231 ACATTAATGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.26, G:0.06, T:0.68
Consensus pattern (6 bp):
CTTTTC
Found at i:75191058 original size:42 final size:41
Alignment explanation
Indices: 75190956--75191095 Score: 129
Period size: 43 Copynumber: 3.3 Consensus size: 41
75190946 GTCTGAGACA
* *
75190956 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCGATTGAAATT
1 TCGTGTAAGACCCTGTCTGGGACATAGGCATCGATTG-AATT
* * * *
75190998 TACATATAAGACCTTGTCTGGGACATCGGCATCGTATCTG-ATT
1 T-CGTGTAAGACCCTGTCTGGGACATAGGCATCG-AT-TGAATT
* *
75191041 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCAATATTGAATT
1 TCGTGTAAGACCCTGTCTGGGACATAGGCATC--GATTGAATT
* *
75191084 ACATGTAAGACC
1 TCGTGTAAGACC
75191096 ACGTCTGAGA
Statistics
Matches: 79, Mismatches: 13, Indels: 11
0.77 0.13 0.11
Matches are distributed among these distances:
42 29 0.37
43 46 0.58
44 2 0.03
45 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (41 bp):
TCGTGTAAGACCCTGTCTGGGACATAGGCATCGATTGAATT
Found at i:75200127 original size:13 final size:13
Alignment explanation
Indices: 75200109--75200133 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75200099 AACTAAGAAT
75200109 CACACGGGCGTGG
1 CACACGGGCGTGG
75200122 CACACGGGCGTG
1 CACACGGGCGTG
75200134 TCTGTTAGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.44, T:0.08
Consensus pattern (13 bp):
CACACGGGCGTGG
Found at i:75202626 original size:29 final size:31
Alignment explanation
Indices: 75202580--75202638 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
75202570 ATTTTTTTTC
*
75202580 CTTTTTTCTTAGAAATATATATAATTTCATT
1 CTTTTTTCTTAGAAATATACATAATTTCATT
75202611 CTTTTTTC-TAG-AATATACATAATTTCAT
1 CTTTTTTCTTAGAAATATACATAATTTCAT
75202639 GCAATTGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 16 0.59
30 3 0.11
31 8 0.30
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.53
Consensus pattern (31 bp):
CTTTTTTCTTAGAAATATACATAATTTCATT
Found at i:75205510 original size:37 final size:37
Alignment explanation
Indices: 75205451--75205522 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
75205441 AGCTCAGACG
*
75205451 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
75205488 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
75205523 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:75205727 original size:50 final size:50
Alignment explanation
Indices: 75205673--75205819 Score: 242
Period size: 50 Copynumber: 2.9 Consensus size: 50
75205663 ATCGCCTACG
* * * *
75205673 TATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATGTA
1 TATTTCACATTGA-CCATTCGGCTTTACCACGTATGCATATCTCATATATA
75205723 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATATATA
1 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATATATA
75205773 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
75205820 TCATCACATT
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 91 0.99
51 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (50 bp):
TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATATATA
Found at i:75205876 original size:47 final size:47
Alignment explanation
Indices: 75205777--75205969 Score: 228
Period size: 47 Copynumber: 4.1 Consensus size: 47
75205767 TATATATATT
* * * *
75205777 TCACATTGACCATTCGGCTTTACCAC-G-TATGCATATCTCATATTCA
1 TCACATTGACCATTCGGCCTTATCACAGATATGCAT-GCTCACATTCA
*
75205823 TCACATTGGCCATTCGGCCTTATCACAGATATGCATGCTCACATTCA
1 TCACATTGACCATTCGGCCTTATCACAGATATGCATGCTCACATTCA
* * * *
75205870 TCACATTGGCCATTCGGTCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGACCATTCGGCCTTATCACAGATATGCATGCTCACATTCA
* * * * **
75205917 TCACATTGACCATTCGGCTTTATCTCATATATACATATTCACATTCA
1 TCACATTGACCATTCGGCCTTATCACAGATATGCATGCTCACATTCA
75205964 TCACAT
1 TCACAT
75205970 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
46 23 0.18
47 101 0.77
48 7 0.05
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTGACCATTCGGCCTTATCACAGATATGCATGCTCACATTCA
Found at i:75205970 original size:25 final size:25
Alignment explanation
Indices: 75205891--75205970 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 25
75205881 ATTCGGTCTT
* *
75205891 ATCACATATATGCATGTTCACATTC
1 ATCACATATATACATATTCACATTC
* * * *
75205916 ATCACAT-T-GAC-CATTCGGC-TTT
1 ATCACATATATACATATTC-ACATTC
*
75205938 ATCTCATATATACATATTCACATTC
1 ATCACATATATACATATTCACATTC
75205963 ATCACATA
1 ATCACATA
75205971 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
22 11 0.29
23 3 0.08
24 4 0.11
25 20 0.53
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (25 bp):
ATCACATATATACATATTCACATTC
Found at i:75209353 original size:48 final size:48
Alignment explanation
Indices: 75209284--75209703 Score: 529
Period size: 48 Copynumber: 8.8 Consensus size: 48
75209274 AGCATCCGAG
* * *
75209284 ATATGTGCCTGTGTAAAACCATGTCTGGGACATGGCGTCGGCAATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * *
75209332 ATATGTGCCTGTGTAAGACCATGTTTGGGACATGACATCAGCGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
*
75209380 ATATGTGCCTGTTTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
75209428 ATATGTGCCTATGTAAGACTATGTCTGGGACATAGCATCCGC-AGTGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGA-TGAT
* *
75209476 ATATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGGTGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * * *
75209524 ATATGTGCCTATGTAAGACCATGTCTTGGACATGGCATTGGTGATGAC
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
75209572 ATATGTGCCTATGTAAGACCATGTCTAGGACATGGCATCAGTGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
75209620 ATATGTGCCAGTGTAAGACCATGTTTGAGACATGGCATTGGCGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* ** * *
75209668 ATGTG-GATTCATGTAAGACCATGTCTGGGAAATGGC
1 ATATGTGCCT-GTGTAAGACCATGTCTGGGACATGGC
75209704 GCTAGTACTT
Statistics
Matches: 323, Mismatches: 46, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.01
48 320 0.99
49 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
Found at i:75210756 original size:76 final size:76
Alignment explanation
Indices: 75210610--75210771 Score: 243
Period size: 76 Copynumber: 2.1 Consensus size: 76
75210600 TTGTGTTGTT
* *
75210610 GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTTCACACGGGTAGACACACAGGCAT
1 GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTCCACACGGGTAGACACACAAGCAT
*
75210675 ATGTCTGGACC
66 ATGTCTAGACC
* * *
75210686 GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTCCATATGGGTAGACACACAAGCGT
1 GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTCCACACGGGTAGACACACAAGCAT
*
75210751 GTGTCTAGACC
66 ATGTCTAGACC
* *
75210762 TTGTGTGACA
1 GTGGGTGACA
75210772 CACGGTCAGC
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (76 bp):
GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTCCACACGGGTAGACACACAAGCAT
ATGTCTAGACC
Found at i:75217252 original size:48 final size:48
Alignment explanation
Indices: 75217186--75217704 Score: 596
Period size: 48 Copynumber: 10.8 Consensus size: 48
75217176 GGCATCTGAG
* *
75217186 ATATGTGCCTGTGTAAGACCATGTCTGGGACAAGGCATCAGCGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * * *
75217234 ATATGTGCTTGTGAAAGACCATGTCTGGGATATGGCATCGACAATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * ** *
75217282 ATATGTTCCTGTGTAAGACCATATCTGAGACATGGCATCGATGACGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* *
75217330 ATATGTGCCTGTGTAAAGACCATGTCTGGGACATGGCATTGACGATGAT
1 ATATGTGCCTGTGT-AAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * * *
75217379 ATATGTGGCTGTGTAATACCATGTCTGGGACATGACATGGGTGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* *
75217427 ATATGTTCCTGTGTAAGACCATGTCTAGGACATGGCATCAGG-GATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-GGCGATGAT
*
75217475 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* ** * *
75217523 ATTTGTGCCACTGTAAGACCATGTTTGGGACATGGCATCGGCAATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
75217571 ATATGTGTCAT-TGTATGACCATGTCTGGGACATGGCATTGGCAATGAT
1 ATATGTG-CCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* ** * *
75217619 ATGTG-GATTCATGTAAGACCATGTCTGGGACATGGCATTGGCGATGAT
1 ATATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* ** *
75217667 ATGTG-GATTCATGTAAGACCATGTCTGGGACATGGCAT
1 ATATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
75217705 TGGTACTTGA
Statistics
Matches: 411, Mismatches: 54, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
46 1 0.00
47 2 0.00
48 363 0.88
49 45 0.11
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
Found at i:75222375 original size:25 final size:26
Alignment explanation
Indices: 75222316--75222365 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
75222306 GTTATTTGAA
75222316 GATGATATTTTTCTATTTTTTTCAGT
1 GATGATATTTTTCTATTTTTTTCAGT
75222342 GATGATATTTTTCTATTTTTTTCA
1 GATGATATTTTTCTATTTTTTTCA
75222366 TGCTACTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.08, G:0.10, T:0.62
Consensus pattern (26 bp):
GATGATATTTTTCTATTTTTTTCAGT
Found at i:75224212 original size:31 final size:31
Alignment explanation
Indices: 75224170--75224248 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
75224160 TTTAACGGTT
*
75224170 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
75224201 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
75224232 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
75224249 ACTGTAAATG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:75224541 original size:50 final size:52
Alignment explanation
Indices: 75224460--75224587 Score: 192
Period size: 50 Copynumber: 2.5 Consensus size: 52
75224450 GCCTAGCCTC
* *
75224460 TTCAAT-AACTGGGGCA-AAGCCCTTTTTGGTAAACTAGGGCA-AAGCCCTT
1 TTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTT
* *
75224509 TTCAATAAACT-GGGCATAAGCCATTTTCGGTAAACTGGGGCATAAGCCCTT
1 TTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTT
75224560 TTCAATAAACTAGGGCATAAGCCCTTTT
1 TTCAATAAACTAGGGCATAAGCCCTTTT
75224588 GCTCTTCCTC
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
49 11 0.15
50 26 0.37
51 19 0.27
52 15 0.21
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (52 bp):
TTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTT
Found at i:75224556 original size:26 final size:26
Alignment explanation
Indices: 75224460--75224587 Score: 156
Period size: 25 Copynumber: 5.1 Consensus size: 26
75224450 GCCTAGCCTC
*
75224460 TTCAAT-AACTGGGGCA-AAGCCCTT
1 TTCAATAAACTAGGGCATAAGCCCTT
***
75224484 TTTGGTAAACTAGGGCA-AAGCCCTT
1 TTCAATAAACTAGGGCATAAGCCCTT
*
75224509 TTCAATAAACT-GGGCATAAGCCATT
1 TTCAATAAACTAGGGCATAAGCCCTT
** *
75224534 TTCGGTAAACTGGGGCATAAGCCCTT
1 TTCAATAAACTAGGGCATAAGCCCTT
75224560 TTCAATAAACTAGGGCATAAGCCCTT
1 TTCAATAAACTAGGGCATAAGCCCTT
75224586 TT
1 TT
75224588 GCTCTTCCTC
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.09
25 41 0.47
26 38 0.44
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
TTCAATAAACTAGGGCATAAGCCCTT
Found at i:75224662 original size:20 final size:20
Alignment explanation
Indices: 75224637--75224723 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
75224627 TTATGAATAC
75224637 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
75224657 ATCATGTGTATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
75224677 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
75224697 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
75224717 ATCATGT
1 ATCATGT
75224724 ATATCATATC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.41
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:75225451 original size:27 final size:28
Alignment explanation
Indices: 75225420--75225484 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
75225410 TACGGAACAG
*
75225420 AAGGGCATATT-C-GTCATTTTACCATAC
1 AAGGGC-TATTACAGTCACTTTACCATAC
*
75225447 AAGGG-TATTACAGTCACTTTACCCTAC
1 AAGGGCTATTACAGTCACTTTACCATAC
75225474 AAGGGCT-TTAC
1 AAGGGCTATTAC
75225485 GGTCTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 4 0.12
26 1 0.03
27 27 0.82
28 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (28 bp):
AAGGGCTATTACAGTCACTTTACCATAC
Found at i:75225494 original size:27 final size:27
Alignment explanation
Indices: 75225432--75225496 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
75225422 GGGCATATTC
75225432 GTCATTTTACCATACAAGGGTATTACA
1 GTCATTTTACCATACAAGGGTATTACA
* * *
75225459 GTCACTTTACCCTACAAGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACA
*
75225486 GTCTTTTTACC
1 GTCATTTTACC
75225497 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACA
Found at i:75225580 original size:27 final size:26
Alignment explanation
Indices: 75225550--75225647 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 26
75225540 GTAAATCTAC
75225550 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCA-TAATTTTGT
* *
75225577 AAACCAATGGTATTTTTATAATTTT-T
1 AAACCAAGGGTA-TTTCATAATTTTGT
* *
75225603 AGAAAGTCAAGGATATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTC-ATAATTTTGT
* *
75225633 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
75225648 TGGTAATTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
26 1 0.02
27 28 0.49
28 13 0.23
29 14 0.25
30 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (26 bp):
AAACCAAGGGTATTTCATAATTTTGT
Found at i:75225654 original size:27 final size:27
Alignment explanation
Indices: 75225624--75225736 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
75225614 GATATTTCTA
**
75225624 TAATTTTGTAAATCAGGGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
* *
75225651 TAATTTTACAAAT-TGAGGGTATTTCGG
1 TAATTTTACAAATCAG-GGGTATTTTGG
* * *
75225678 TAATTTCACAAACCAGTGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
75225705 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATC-AGGGGTATTTTGG
75225732 TAATT
1 TAATT
75225737 CTATCCTACA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.03
27 69 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAATCAGGGGTATTTTGG
Found at i:75225831 original size:27 final size:27
Alignment explanation
Indices: 75225772--75225910 Score: 172
Period size: 27 Copynumber: 5.2 Consensus size: 27
75225762 TTTCACAATT
** *
75225772 GAGGGTAAAACAATAATT-TCTAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
* * *
75225798 AAGGGTAAAATGGTAATTCTATAAATT
1 GAGGGTAAAACGGTAATTCTATAAATC
*
75225825 GAAGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
75225852 GAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
* * *
75225879 GAGGGTAAAATGGTAATTTTACAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
75225906 GAGGG
1 GAGGG
75225911 CATTTCAGTA
Statistics
Matches: 96, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 14 0.15
27 82 0.85
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTATAAATC
Found at i:75229695 original size:36 final size:36
Alignment explanation
Indices: 75229655--75229731 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
75229645 ATGATGATTG
* * *
75229655 ATGTGAAAGTGAATATGAGGGTGTGTTGTTCATGCC
1 ATGTGAAAGTAAATATGAGGGTATGTTATTCATGCC
* * *
75229691 ATGTGACAGTAAATATGCGTGTATGTTATTCATGCC
1 ATGTGAAAGTAAATATGAGGGTATGTTATTCATGCC
75229727 ATGTG
1 ATGTG
75229732 GTAGTGATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.10, G:0.29, T:0.35
Consensus pattern (36 bp):
ATGTGAAAGTAAATATGAGGGTATGTTATTCATGCC
Found at i:75233078 original size:22 final size:22
Alignment explanation
Indices: 75233050--75233092 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
75233040 CGACAAATGT
75233050 GATGAAAAGAAAGGAAGTAGTA
1 GATGAAAAGAAAGGAAGTAGTA
*
75233072 GATGAAAAGAAAGGGAGTAGT
1 GATGAAAAGAAAGGAAGTAGT
75233093 GGTTTGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.35, T:0.14
Consensus pattern (22 bp):
GATGAAAAGAAAGGAAGTAGTA
Found at i:75237787 original size:25 final size:25
Alignment explanation
Indices: 75237753--75237802 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
75237743 TGGCATGGCC
75237753 TTGGACATGGGCGTGTTACACGGCT
1 TTGGACATGGGCGTGTTACACGGCT
75237778 TTGGACATGGGCGTGTTACACGGCT
1 TTGGACATGGGCGTGTTACACGGCT
75237803 GTGTGAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.20, G:0.36, T:0.28
Consensus pattern (25 bp):
TTGGACATGGGCGTGTTACACGGCT
Found at i:75243387 original size:29 final size:29
Alignment explanation
Indices: 75243352--75243425 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75243342 GTTGTGAGAT
* *
75243352 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
75243381 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
75243410 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75243426 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:75251160 original size:29 final size:29
Alignment explanation
Indices: 75251125--75251198 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75251115 GTTGTGAGAT
* *
75251125 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
75251154 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
75251183 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75251199 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:75265440 original size:45 final size:44
Alignment explanation
Indices: 75265356--75265440 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 44
75265346 ATGTAATCTC
* *
75265356 AACTCATTGAGTTGTGTTTGAGTTCATGATATATGTGACATCCG
1 AACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCCG
*
75265400 AACTCATTGAGTTGTGGTCTGAGTTCGA-GATATGTATGACA
1 AACTCATTGAGTTGT-GTCTGAGTTC-ATGATATATATGACA
75265441 AGGTTTTGGC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 15 0.42
45 20 0.56
46 1 0.03
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCCG
Found at i:75265803 original size:2 final size:2
Alignment explanation
Indices: 75265796--75265822 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
75265786 TAAGAACATG
75265796 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
75265823 GAGAAATAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75271213 original size:40 final size:40
Alignment explanation
Indices: 75271147--75271313 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
75271137 AAATTGAATG
* * *
75271147 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
75271186 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
75271226 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
75271266 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
75271306 ATATCCGG
1 ATATCCGG
75271314 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:75282752 original size:40 final size:40
Alignment explanation
Indices: 75282686--75282852 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
75282676 AAATTGAATG
* * *
75282686 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
75282725 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
75282765 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
75282805 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
75282845 ATATCCGG
1 ATATCCGG
75282853 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:75290826 original size:40 final size:39
Alignment explanation
Indices: 75290731--75290858 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
75290721 TGCTGGAAAT
* * * *
75290731 TATATCCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
* *
75290770 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
75290810 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
75290850 TATATCCGG
1 TATATCCGG
75290859 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 27 0.35
40 48 0.62
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:75294494 original size:17 final size:17
Alignment explanation
Indices: 75294472--75294504 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
75294462 TGAATGAAAA
75294472 AAATGCTAG-GGCAATTG
1 AAATGCT-GTGGCAATTG
75294489 AAATGCTGTGGCAATT
1 AAATGCTGTGGCAATT
75294505 TTCAAAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (17 bp):
AAATGCTGTGGCAATTG
Found at i:75297831 original size:44 final size:44
Alignment explanation
Indices: 75297737--75297839 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 44
75297727 TGCCAGTCGG
* * *
75297737 GGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACATTTCTG
1 GGACATGCATC-GGCTCGAGATGT-AGCCAGTGTAAGACATGTCTA
*
75297783 GGACATGCATCGGCTGCGAGATGT-GCTAGTGTAAGACATGTCTA
1 GGACATGCATCGGCT-CGAGATGTAGCCAGTGTAAGACATGTCTA
75297827 GGACATGCATCGG
1 GGACATGCATCGG
75297840 TACTGATGTG
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
44 30 0.58
45 3 0.06
46 19 0.37
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
GGACATGCATCGGCTCGAGATGTAGCCAGTGTAAGACATGTCTA
Found at i:75306818 original size:30 final size:30
Alignment explanation
Indices: 75306782--75306850 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
75306772 CACACGGGTA
75306782 GACACACGGGCATGTGTCTAGGCCGTGTGT
1 GACACACGGGCATGTGTCTAGGCCGTGTGT
75306812 GACACACGGGCATGTGTCTAGGCCGTGTGT
1 GACACACGGGCATGTGTCTAGGCCGTGTGT
75306842 GACACACGG
1 GACACACGG
75306851 TCAACCCCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.25, G:0.36, T:0.20
Consensus pattern (30 bp):
GACACACGGGCATGTGTCTAGGCCGTGTGT
Found at i:75325505 original size:86 final size:86
Alignment explanation
Indices: 75325334--75325495 Score: 193
Period size: 86 Copynumber: 1.9 Consensus size: 86
75325324 TTATTTGTAT
* * * *
75325334 TGTAACACCCCTAACCCGTATCCGTCGTCGAAACAGGGCTTCAGAGCATTACCAAAACTTTTAGA
1 TGTAACACCCCTAACCCATATCCGTCGTCAAAACAGGGCTTCAGAGCATTACCAAAACATTCAGA
75325399 AACATTTACAAGTAAATCATG
66 AACATTTACAAGTAAATCATG
* * * * ***
75325420 TGTAACACCCCTAACCCATATTCGTCG-CTAAAATAGGGTTTCAGAGCGTTACTGGAACATTCAG
1 TGTAACACCCCTAACCCATATCCGTCGTC-AAAACAGGGCTTCAGAGCATTACCAAAACATTCAG
75325484 -AACATTTTACAA
65 AAACA-TTTACAA
75325496 TCAATTCATG
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 5 0.08
86 58 0.92
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (86 bp):
TGTAACACCCCTAACCCATATCCGTCGTCAAAACAGGGCTTCAGAGCATTACCAAAACATTCAGA
AACATTTACAAGTAAATCATG
Found at i:75336383 original size:47 final size:47
Alignment explanation
Indices: 75336324--75336441 Score: 182
Period size: 47 Copynumber: 2.5 Consensus size: 47
75336314 TCCATAAGTG
* * * *
75336324 AACTCAGACTCAACTCAATGAGTTCGGATGCCTATTTACATTTCACA
1 AACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATTTCACA
*
75336371 AACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATTTCACG
1 AACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATTTCACA
*
75336418 AACACGGACTCAACTCAACGAGTT
1 AACTCGGACTCAACTCAACGAGTT
75336442 TGGACATTCG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACATTTCACA
Found at i:75336945 original size:29 final size:30
Alignment explanation
Indices: 75336913--75336971 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
75336903 ATTTAATATG
75336913 AACTTTGGAAAAATTACACTTTT-CCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
75336942 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
75336972 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:75338553 original size:28 final size:27
Alignment explanation
Indices: 75338506--75338567 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
75338496 TCTGATACTA
* * *
75338506 ATTCTA-TATTGGGCTTAGGCCCACCTT
1 ATTCTATTAATGGGCTAAGG-CCACCTG
75338533 ATTCTATTAATGGGCTAAGGCCACCTG
1 ATTCTATTAATGGGCTAAGGCCACCTG
*
75338560 ATACTATT
1 ATTCTATT
75338568 CCTGTGATGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 19 0.63
28 11 0.37
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
ATTCTATTAATGGGCTAAGGCCACCTG
Found at i:75341741 original size:46 final size:46
Alignment explanation
Indices: 75341691--75341863 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
75341681 TTGAGCATCA
*
75341691 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * * *
75341737 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * * *
75341784 GAGCTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
75341830 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75341864 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:75349288 original size:46 final size:45
Alignment explanation
Indices: 75349238--75349412 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
75349228 TGGTTGAGCA
75349238 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
75349284 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
*
75349330 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
75349376 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75349413 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:75349392 original size:92 final size:92
Alignment explanation
Indices: 75349235--75349405 Score: 306
Period size: 92 Copynumber: 1.9 Consensus size: 92
75349225 GGATGGTTGA
* *
75349235 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75349300 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
* *
75349327 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75349392 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75349406 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:75352512 original size:3 final size:3
Alignment explanation
Indices: 75352504--75352531 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
75352494 GTTAATAAAT
75352504 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
75352532 AAGATGCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:75353706 original size:19 final size:18
Alignment explanation
Indices: 75353662--75353711 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 18
75353652 TCTGATTAAA
75353662 TATTTT-ATAAAT--TTT
1 TATTTTAATAAATAATTT
* *
75353677 TATTTTGATAATTAATTT
1 TATTTTAATAAATAATTT
75353695 TATTATTAATAAATAAT
1 TATT-TTAATAAATAAT
75353712 AAAATATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 6 0.21
16 5 0.18
18 7 0.25
19 10 0.36
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
TATTTTAATAAATAATTT
Found at i:75354852 original size:46 final size:46
Alignment explanation
Indices: 75354795--75354882 Score: 113
Period size: 46 Copynumber: 1.9 Consensus size: 46
75354785 TGTTTTTATA
* * * *
75354795 GTGGCTCGACCAGACATATTTGTTATGGCAGCTTGACTGCAATATT
1 GTGGCTCGACCACACATATCTGATATGGCAGCTTAACTGCAATATT
* * *
75354841 GTGGCTTGACCACATATATCTGATATGGCAGTTTAACTGCAA
1 GTGGCTCGACCACACATATCTGATATGGCAGCTTAACTGCAA
75354883 CTCTAGTGGC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 35 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (46 bp):
GTGGCTCGACCACACATATCTGATATGGCAGCTTAACTGCAATATT
Found at i:75355669 original size:39 final size:39
Alignment explanation
Indices: 75355610--75355688 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
75355600 CATTTTGCGT
75355610 TGGTCTTTTGGGGCTACAACTATTTGGTTATGTCCTGAA
1 TGGTCTTTTGGGGCTACAACTATTTGGTTATGTCCTGAA
*
75355649 TGGTCTTTTGGGGCTGCAACTATTTGGTTATGTCCTGAA
1 TGGTCTTTTGGGGCTACAACTATTTGGTTATGTCCTGAA
75355688 T
1 T
75355689 ATCCTTCTCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.16, C:0.15, G:0.27, T:0.42
Consensus pattern (39 bp):
TGGTCTTTTGGGGCTACAACTATTTGGTTATGTCCTGAA
Found at i:75358066 original size:26 final size:26
Alignment explanation
Indices: 75358030--75358081 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
75358020 TGTTGTAGAC
75358030 AAAATGTGCACTTGATATCCATAATT
1 AAAATGTGCACTTGATATCCATAATT
75358056 AAAATGTGCACTTGATATCCATAATT
1 AAAATGTGCACTTGATATCCATAATT
75358082 TATGGTACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (26 bp):
AAAATGTGCACTTGATATCCATAATT
Found at i:75358133 original size:26 final size:26
Alignment explanation
Indices: 75358104--75358186 Score: 148
Period size: 26 Copynumber: 3.2 Consensus size: 26
75358094 TGATACAAAT
75358104 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75358130 TGATAATGGGTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75358156 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75358182 TGATA
1 TGATA
75358187 GGAATTTCAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75359820 original size:27 final size:28
Alignment explanation
Indices: 75359780--75359935 Score: 171
Period size: 27 Copynumber: 5.8 Consensus size: 28
75359770 AGGAAGCGTC
* *
75359780 CTGGTGGCTATGCCACAAT-TATTTGAT
1 CTGGTGGCTCTGCCACAATATATCTGAT
75359807 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAATATATCTGAT
*
75359833 CCTGGTGGCTATGCCACAAT-TATCTGAT
1 -CTGGTGGCTCTGCCACAATATATCTGAT
* *
75359861 CTGGTGGCTCTGTCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAATATATCTGAT
* *
75359888 CTGGTGGCTCTGCCACAATATCTAT-AT
1 CTGGTGGCTCTGCCACAATATATCTGAT
* * *
75359915 CTGGTGACTCCGTCACAATAT
1 CTGGTGGCTCTGCCACAATAT
75359936 CTGGCAGCCT
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
26 5 0.05
27 96 0.87
28 9 0.08
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATATATCTGAT
Found at i:75359861 original size:54 final size:54
Alignment explanation
Indices: 75359777--75359938 Score: 238
Period size: 54 Copynumber: 3.0 Consensus size: 54
75359767 TGGAGGAAGC
* *
75359777 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
75359831 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
* * * * *
75359885 GTTCTGGTGGCTCTGCCACAA-TATCTATATCTGGTGACTCCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCT-GATCTGGTGGCTCTGTCACATATATCT
75359938 G
1 G
75359939 GCAGCCTCGC
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
Found at i:75365786 original size:18 final size:18
Alignment explanation
Indices: 75365763--75365799 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
75365753 TTTGGAACTC
75365763 CCAAAGAGCTTTAAAATA
1 CCAAAGAGCTTTAAAATA
75365781 CCAAAGAGCTTTAAAATA
1 CCAAAGAGCTTTAAAATA
75365799 C
1 C
75365800 AGTAACTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.22
Consensus pattern (18 bp):
CCAAAGAGCTTTAAAATA
Done.