Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 244 of 438
Found at i:75699956 original size:20 final size:20
Alignment explanation
Indices: 75699894--75699957 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
75699884 AAATTTTTTT
75699894 ATTTTAGTACACATTCATAA
1 ATTTTAGTACACATTCATAA
* ** ** *
75699914 ATTTATATTTTA-ATTTTTTA
1 ATTT-TAGTACACATTCATAA
75699934 ATTTTAGTACACATTCATAA
1 ATTTTAGTACACATTCATAA
75699954 ATTT
1 ATTT
75699958 ATATACTTAA
Statistics
Matches: 30, Mismatches: 12, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 4 0.13
20 22 0.73
21 4 0.13
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (20 bp):
ATTTTAGTACACATTCATAA
Found at i:75699979 original size:40 final size:40
Alignment explanation
Indices: 75699894--75699979 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
75699884 AAATTTTTTT
* * *
75699894 ATTTTAGTACACATTCATAAATTTATATTTTAATTTTTTA
1 ATTTTAGTACACATTCATAAATTTATATCTTAATTATATA
75699934 ATTTTAGTACACATTCATAAATTTATATACTTAA-TATATA
1 ATTTTAGTACACATTCATAAATTTATAT-CTTAATTATATA
*
75699974 TTTTTA
1 ATTTTA
75699980 ATAGGTAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 37 0.90
41 4 0.10
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.52
Consensus pattern (40 bp):
ATTTTAGTACACATTCATAAATTTATATCTTAATTATATA
Found at i:75700115 original size:71 final size:71
Alignment explanation
Indices: 75700035--75700176 Score: 257
Period size: 71 Copynumber: 2.0 Consensus size: 71
75700025 AAAAAACTTA
*
75700035 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTCAAAATTTTAATATATTTAATAT
1 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTCAAAATTTTAATATATTCAATAT
75700100 ATTTTT
66 ATTTTT
* *
75700106 AAAAAATTAAATATATTAAAAAATTTTAAGTATAACCAATTTTAAAATTTTAATATATTCAATAT
1 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTCAAAATTTTAATATATTCAATAT
75700171 ATTTTT
66 ATTTTT
75700177 TTTAAAAATA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (71 bp):
AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTCAAAATTTTAATATATTCAATAT
ATTTTT
Found at i:75700219 original size:19 final size:19
Alignment explanation
Indices: 75700197--75700234 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
75700187 TTTTAAAATG
*
75700197 TTAATATATTTAATATTTT
1 TTAATATATTTAAAATTTT
75700216 TTAATATATTTAAAATTTT
1 TTAATATATTTAAAATTTT
75700235 AAAAAACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTAATATATTTAAAATTTT
Found at i:75700234 original size:17 final size:17
Alignment explanation
Indices: 75700183--75700282 Score: 71
Period size: 17 Copynumber: 5.8 Consensus size: 17
75700173 TTTTTTTAAA
*
75700183 AATAT-TTTAAAATGTT
1 AATATATTTAAAATTTT
*
75700199 AATATATTTAATATTTTTT
1 AATATATTTAA-A-ATTTT
75700218 AATATATTTAAAATTTT
1 AATATATTTAAAATTTT
* * * **
75700235 AAAAAACTTAAAAAAATT
1 AATATA-TTTAAAATTTT
75700253 AA-ATATATTAAAATTTT
1 AATATAT-TTAAAATTTT
75700270 AA-ATATGTTAAAA
1 AATATAT-TTAAAA
75700283 GAAAATGTTG
Statistics
Matches: 66, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
16 6 0.09
17 34 0.52
18 12 0.18
19 14 0.21
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (17 bp):
AATATATTTAAAATTTT
Found at i:75702134 original size:30 final size:29
Alignment explanation
Indices: 75702098--75702176 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
75702088 GTCACAGAGC
* *
75702098 AGTTCATATCACTTGGACATTGGCAGTTCA
1 AGTTCATATCACCTGGACATGGGC-GTTCA
*** *
75702128 AGTTCATATCACCCAAACATGGGCGTTCG
1 AGTTCATATCACCTGGACATGGGCGTTCA
75702157 AGTTCATATCACCTGGACAT
1 AGTTCATATCACCTGGACAT
75702177 AGCGCGGTAC
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
29 21 0.52
30 19 0.47
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (29 bp):
AGTTCATATCACCTGGACATGGGCGTTCA
Found at i:75702176 original size:29 final size:30
Alignment explanation
Indices: 75702098--75702200 Score: 100
Period size: 30 Copynumber: 3.4 Consensus size: 30
75702088 GTCACAGAGC
* * *
75702098 AGTTCATATCACTTGGACATTGGCAGTTCA
1 AGTTCATATCACCTGGACATGGGCAGTTCG
***
75702128 AGTTCATATCACCCAAACATGGGC-GTTCG
1 AGTTCATATCACCTGGACATGGGCAGTTCG
* * *
75702157 AGTTCATATCACCTGGACATAGCGCGGTACG
1 AGTTCATATCACCTGGACAT-GGGCAGTTCG
*
75702188 AGTTCATTTCACC
1 AGTTCATATCACC
75702201 CAGAGCAACC
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
29 21 0.36
30 22 0.37
31 16 0.27
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (30 bp):
AGTTCATATCACCTGGACATGGGCAGTTCG
Found at i:75705523 original size:12 final size:13
Alignment explanation
Indices: 75705469--75705523 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 13
75705459 AAACGTTTGA
75705469 ATATCTTTAAAATT
1 ATAT-TTTAAAATT
75705483 A-ATTTTAAAATT
1 ATATTTTAAAATT
75705495 AATAATTTATAAAAATT
1 -AT-ATTT-T-AAAATT
75705512 ATA-TTTAAAATT
1 ATATTTTAAAATT
75705524 TAAAAAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
12 15 0.42
13 4 0.11
14 3 0.08
15 5 0.14
16 3 0.08
17 6 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATTTTAAAATT
Found at i:75705537 original size:11 final size:11
Alignment explanation
Indices: 75705521--75705555 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
75705511 TATATTTAAA
75705521 ATTTAAAAAAT
1 ATTTAAAAAAT
75705532 ATTTAAAAAATAT
1 ATTT-AAAAA-AT
75705545 ATTTAAAAAAT
1 ATTTAAAAAAT
75705556 TATAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.27
12 10 0.45
13 6 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
ATTTAAAAAAT
Found at i:75705546 original size:13 final size:13
Alignment explanation
Indices: 75705521--75705555 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
75705511 TATATTTAAA
75705521 ATTT-AAAAA-AT
1 ATTTAAAAAATAT
75705532 ATTTAAAAAATAT
1 ATTTAAAAAATAT
75705545 ATTTAAAAAAT
1 ATTTAAAAAAT
75705556 TATAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 4 0.18
12 5 0.23
13 13 0.59
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTTAAAAAATAT
Found at i:75705555 original size:33 final size:34
Alignment explanation
Indices: 75705499--75705562 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 34
75705489 AAAATTAATA
75705499 ATTTATAAAAATTATATTTAAAATT-TAAAAAAT
1 ATTTATAAAAATTATATTTAAAATTATAAAAAAT
75705532 ATTTA-AAAAA-TATATTTAAAAAATTATAAAA
1 ATTTATAAAAATTATATTT--AAAATTATAAAA
75705563 CAAATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 7 0.25
32 5 0.18
33 11 0.39
34 5 0.18
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (34 bp):
ATTTATAAAAATTATATTTAAAATTATAAAAAAT
Found at i:75705619 original size:25 final size:23
Alignment explanation
Indices: 75705590--75705665 Score: 68
Period size: 23 Copynumber: 3.2 Consensus size: 23
75705580 AGTTCATATC
*
75705590 TTTAAAAATAATATATTTTAAATAA
1 TTTAAAAATAATA-ATTTAAAAT-A
*
75705615 TTTAAAAATCATAATTTAAAATA
1 TTTAAAAATAATAATTTAAAATA
75705638 -TTATAAAAT-A-AATTTAAAAAATA
1 TTTA-AAAATAATAATTT--AAAATA
75705661 TTTAA
1 TTTAA
75705666 TATTTAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
21 5 0.11
22 4 0.09
23 13 0.29
24 11 0.24
25 12 0.27
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (23 bp):
TTTAAAAATAATAATTTAAAATA
Found at i:75705621 original size:24 final size:24
Alignment explanation
Indices: 75705592--75705705 Score: 67
Period size: 24 Copynumber: 4.5 Consensus size: 24
75705582 TTCATATCTT
*
75705592 TAAAAATAATATATTTTAAATAATT-
1 TAAAAATAATA-ATTTAAAAT-ATTA
*
75705617 TAAAAATCATAATTTAAAATATTA
1 TAAAAATAATAATTTAAAATATTA
75705641 T-AAAAT-A-AATTTAAAAAATATTTAA
1 TAAAAATAATAATTT--AAAATA-TT-A
*
75705666 TATTTAAAAT-ATACATATAAAATATTA
1 TA---AAAATAATA-ATTTAAAATATTA
*
75705693 TAAAATTAATAAT
1 TAAAAATAATAAT
75705706 AAATTTGAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 25
0.72 0.04 0.25
Matches are distributed among these distances:
21 5 0.07
22 1 0.01
23 14 0.19
24 17 0.23
25 15 0.21
27 3 0.04
28 2 0.03
29 12 0.16
30 1 0.01
31 3 0.04
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
TAAAAATAATAATTTAAAATATTA
Found at i:75705753 original size:18 final size:16
Alignment explanation
Indices: 75705730--75705782 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 16
75705720 ATATCTTTAA
75705730 AATATTTAAATATTTT
1 AATATTTAAATATTTT
*
75705746 ATATTATTAAAAATATATTT
1 A-A-TATT-TAAATAT-TTT
75705766 AATATTTAAA-ATTTT
1 AATATTTAAATATTTT
75705781 AA
1 AA
75705783 AAAGTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
15 5 0.16
16 3 0.10
17 4 0.13
18 8 0.26
19 7 0.23
20 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
AATATTTAAATATTTT
Found at i:75705785 original size:28 final size:29
Alignment explanation
Indices: 75705731--75705791 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
75705721 TATCTTTAAA
* *
75705731 ATATTTAAATATTTTATATTATTAAAAAT
1 ATATTTAAATATTTAAAATTATTAAAAAT
75705760 ATATTT-AATATTTAAAATT-TTAAAAAGT
1 ATATTTAAATATTTAAAATTATTAAAAA-T
75705788 ATAT
1 ATAT
75705792 ATTATAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 7 0.24
28 16 0.55
29 6 0.21
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
ATATTTAAATATTTAAAATTATTAAAAAT
Found at i:75705793 original size:23 final size:21
Alignment explanation
Indices: 75705767--75705826 Score: 57
Period size: 23 Copynumber: 2.7 Consensus size: 21
75705757 AATATATTTA
75705767 ATATTTAAAATTTTAAAAAGTAT
1 ATATTTAAAATTTT-AAAA-TAT
*
75705790 ATATTATAAAATATTTCAAATAT
1 ATATT-TAAAAT-TTTAAAATAT
* *
75705813 ACATTTCAAATTTT
1 ATATTTAAAATTTT
75705827 TTAAAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 3 0.09
22 5 0.16
23 12 0.38
24 9 0.28
25 3 0.09
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (21 bp):
ATATTTAAAATTTTAAAATAT
Found at i:75705803 original size:135 final size:134
Alignment explanation
Indices: 75705527--75705843 Score: 355
Period size: 135 Copynumber: 2.4 Consensus size: 134
75705517 TAAAATTTAA
* * * ** *
75705527 AAAATATTTAAAAAATATATTTAAAAAATTATAAAACAAATAATAAATTTGAAAGTTCATATCTT
1 AAAATATTTAAAATATACATTTAAAATATTATAAAATTAATAATAAATTTGAAAGGTCATATCTT
75705592 TAAAAATAATATATTTTAAATAATTTAAAAATCATAATTTAAAATATTATAAAATAAATTTAAAA
66 TAAAAATAATATATTTTAAATAATTTAAAAATCATAATTT-AAATATTATAAAAT--ATTTAAAA
75705657 AATATTT
128 AATATTT
*
75705664 --AATATTTAAAATATACATATAAAATATTATAAAATTAATAATAAATTTGAAAGGTCATATCTT
1 AAAATATTTAAAATATACATTTAAAATATTATAAAATTAATAATAAATTTGAAAGGTCATATCTT
* *
75705727 TAAAATATTTAA-ATATTTTATATTA-TTAAAAAT-AT-ATTT-AATATT-TAAAAT-TTTAAAA
66 TAAAA-A--TAATATATTTTAAATAATTTAAAAATCATAATTTAAATATTATAAAATATTT-AAA
75705785 AGTATATATTAT
127 A--A-ATATT-T
* * * *
75705797 AAAATATTTCAAATATACATTTCAAATTTTTTAAAATTAATAATAAA
1 AAAATATTTAAAATATACATTTAAAATATTATAAAATTAATAATAAA
75705844 AAGTAAATAA
Statistics
Matches: 156, Mismatches: 14, Indels: 22
0.81 0.07 0.11
Matches are distributed among these distances:
128 3 0.02
129 4 0.03
131 7 0.04
132 11 0.07
133 1 0.01
134 4 0.03
135 103 0.66
136 9 0.06
137 11 0.07
138 3 0.02
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (134 bp):
AAAATATTTAAAATATACATTTAAAATATTATAAAATTAATAATAAATTTGAAAGGTCATATCTT
TAAAAATAATATATTTTAAATAATTTAAAAATCATAATTTAAATATTATAAAATATTTAAAAAAT
ATTT
Found at i:75717509 original size:12 final size:12
Alignment explanation
Indices: 75717492--75717524 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
75717482 TATTTTTTAG
75717492 TTATTTACTCAC
1 TTATTTACTCAC
*
75717504 TTATTTATTCAC
1 TTATTTACTCAC
75717516 TTATTTACT
1 TTATTTACT
75717525 TCAATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTTACTCAC
Found at i:75718392 original size:19 final size:18
Alignment explanation
Indices: 75718368--75718423 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
75718358 TGAGATACGT
75718368 TTCGTGCTGCAGGATGTGC
1 TTCGTG-TGCAGGATGTGC
* **
75718387 TTCGTGTGCTAGAATGCAC
1 TTCGTGTGC-AGGATGTGC
75718406 TTCGTGTGTCAGGATGTG
1 TTCGTGTG-CAGGATGTG
75718424 TTTTGTGTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
18 3 0.10
19 25 0.86
20 1 0.03
ACGTcount: A:0.14, C:0.18, G:0.34, T:0.34
Consensus pattern (18 bp):
TTCGTGTGCAGGATGTGC
Found at i:75718410 original size:38 final size:39
Alignment explanation
Indices: 75718368--75718450 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 39
75718358 TGAGATACGT
*
75718368 TTCGTGCTG-CAGGATGTGCTTCGTGTGCTAGAATGCAC
1 TTCGTGCTGTCAGGATGTGCTTCGTGTGCCAGAATGCAC
* * * *
75718406 TTCGTG-TGTCAGGATGTGTTTTGTGTTCCAGGATGCAC
1 TTCGTGCTGTCAGGATGTGCTTCGTGTGCCAGAATGCAC
*
75718444 GTCGTGC
1 TTCGTGC
75718451 ACCAGTATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
37 2 0.05
38 35 0.95
ACGTcount: A:0.13, C:0.19, G:0.33, T:0.35
Consensus pattern (39 bp):
TTCGTGCTGTCAGGATGTGCTTCGTGTGCCAGAATGCAC
Found at i:75721455 original size:6 final size:6
Alignment explanation
Indices: 75721444--75721473 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
75721434 TTCAACCTTT
75721444 ATTTTA ATTTTA ATTTTA ATTTTA TATTTT
1 ATTTTA ATTTTA ATTTTA ATTTTA -ATTTT
75721474 TTAGTTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
ATTTTA
Found at i:75721667 original size:35 final size:35
Alignment explanation
Indices: 75721582--75721668 Score: 86
Period size: 35 Copynumber: 2.5 Consensus size: 35
75721572 CTTAAATGTG
* ** *
75721582 TCTATCCCAACCTTTTGAAGGTTGCTTTAGATGGG
1 TCTATCCCAACCTTTTGAAGGTTGCCTTAGACCGA
* * *
75721617 TCTATTCTAACCCTTTT-AAGGTTGCCTTAGAACCTA
1 TCTATCCCAA-CCTTTTGAAGGTTGCCTTAG-ACCGA
75721653 TCTATCCCAACCTTTT
1 TCTATCCCAACCTTTT
75721669 TAACGTCACA
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
35 26 0.63
36 15 0.37
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (35 bp):
TCTATCCCAACCTTTTGAAGGTTGCCTTAGACCGA
Found at i:75721808 original size:114 final size:114
Alignment explanation
Indices: 75721625--75721831 Score: 342
Period size: 114 Copynumber: 1.8 Consensus size: 114
75721615 GGTCTATTCT
*
75721625 AACCCTTTTAAGGTTGCCTTAGAACCTATCTATCCCAACCTTTTTAACGTCACATTTGACGTGGG
1 AACCATTTTAAGGTTGCCTTAGAACCTATCTATCCCAACCTTTTTAACGTCACATTTGACGTGGG
** * *
75721690 CATGATTCAACTCTTTAAAGGTTGGTATAGAATTAGACGAGTCTAACCC
66 CATGACCCAACTCTTTAAAAGTCGGTATAGAATTAGACGAGTCTAACCC
* *
75721739 AACCATTTTAAGGTTGCCTTAGAACCTGTCTATCCCAACCTTTTTAACGTCGCATTTGACGTGGG
1 AACCATTTTAAGGTTGCCTTAGAACCTATCTATCCCAACCTTTTTAACGTCACATTTGACGTGGG
*
75721804 CATGACCCAATTCTTTAAAAGTCGGTAT
66 CATGACCCAACTCTTTAAAAGTCGGTAT
75721832 GTGTATGCTT
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 85 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (114 bp):
AACCATTTTAAGGTTGCCTTAGAACCTATCTATCCCAACCTTTTTAACGTCACATTTGACGTGGG
CATGACCCAACTCTTTAAAAGTCGGTATAGAATTAGACGAGTCTAACCC
Found at i:75723834 original size:40 final size:40
Alignment explanation
Indices: 75723797--75724020 Score: 271
Period size: 39 Copynumber: 5.7 Consensus size: 40
75723787 GCTACTCGTT
* * *
75723797 CAAATGCCTTCGGGACATATCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
75723837 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
75723877 CCAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
75723916 CCAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
75723955 CGAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
75723996 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75724021 CATCATTCGA
Statistics
Matches: 167, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
39 80 0.48
40 75 0.45
41 12 0.07
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:75723900 original size:79 final size:78
Alignment explanation
Indices: 75723799--75724020 Score: 286
Period size: 79 Copynumber: 2.8 Consensus size: 78
75723789 TACTCGTTCA
* * * *
75723799 AATGCCTTCGGGACATATCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
75723864 TTAGTAACTCGCACC
64 TTAGTAACTCGCACC
* *
75723879 AATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCACCAATGCCTTC-GGACTTAGCCCGGAAT
1 AATGCCTTCGGACTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
*
75723943 TAGTAACTCGCACG
65 TAGTAACTCGCACC
* * *
75723957 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGA-CTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
75724021 CATCATTCGA
Statistics
Matches: 125, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 40 0.32
79 54 0.43
80 31 0.25
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
AATGCCTTCGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATT
AGTAACTCGCACC
Found at i:75726470 original size:8 final size:8
Alignment explanation
Indices: 75726457--75726563 Score: 67
Period size: 8 Copynumber: 12.5 Consensus size: 8
75726447 TTATAATTCA
75726457 ATTTTTAT
1 ATTTTTAT
75726465 ATTTTTAT
1 ATTTTTAT
75726473 ATTTTTAT
1 ATTTTTAT
*
75726481 A-TATTAT
1 ATTTTTAT
*
75726488 -TTTTAAT
1 ATTTTTAT
*
75726495 A-ATTTAT
1 ATTTTTAT
*
75726502 AATTCTTTTACA
1 -A-T-TTTTA-T
75726514 ATTTTTAT
1 ATTTTTAT
75726522 GATTTTTTAAT
1 -A-TTTTT-AT
75726533 ATTTTTACT
1 ATTTTTA-T
75726542 ATTTTTCATT
1 ATTTTT-A-T
75726552 ATTTTTAT
1 ATTTTTAT
75726560 ATTT
1 ATTT
75726564 AAAAAATATT
Statistics
Matches: 78, Mismatches: 9, Indels: 24
0.70 0.08 0.22
Matches are distributed among these distances:
7 13 0.17
8 24 0.31
9 19 0.24
10 15 0.19
11 7 0.09
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.67
Consensus pattern (8 bp):
ATTTTTAT
Found at i:75726485 original size:10 final size:10
Alignment explanation
Indices: 75726458--75726561 Score: 57
Period size: 9 Copynumber: 10.8 Consensus size: 10
75726448 TATAATTCAA
75726458 TTTT-TATAT
1 TTTTATATAT
75726467 TTTTATAT-T
1 TTTTATATAT
75726476 TTTATATATTAT
1 TTT-TATA-TAT
75726488 TTTTA-ATA-
1 TTTTATATAT
*
75726496 ATTTATA-AT
1 TTTTATATAT
*
75726505 TCTTT-TACAAT
1 T-TTTATA-TAT
75726516 TTTTATGAT-T
1 TTTTAT-ATAT
75726526 TTTTA-ATAT
1 TTTTATATAT
75726535 TTTTACTAT-T
1 TTTTA-TATAT
*
75726545 TTTCAT-TAT
1 TTTTATATAT
75726554 TTTTATAT
1 TTTTATAT
75726562 TTAAAAAATA
Statistics
Matches: 74, Mismatches: 5, Indels: 31
0.67 0.05 0.28
Matches are distributed among these distances:
8 8 0.11
9 26 0.35
10 26 0.35
11 9 0.12
12 5 0.07
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.67
Consensus pattern (10 bp):
TTTTATATAT
Found at i:75726545 original size:19 final size:18
Alignment explanation
Indices: 75726514--75726563 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
75726504 TTCTTTTACA
*
75726514 ATTTTTATGATTTTTTAAT
1 ATTTTTAT-ATTTTTCAAT
*
75726533 ATTTTTACTATTTTTCATT
1 ATTTTTA-TATTTTTCAAT
75726552 ATTTTTATATTT
1 ATTTTTATATTT
75726564 AAAAAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 5 0.18
19 22 0.79
20 1 0.04
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (18 bp):
ATTTTTATATTTTTCAAT
Found at i:75726558 original size:28 final size:27
Alignment explanation
Indices: 75726457--75726563 Score: 77
Period size: 28 Copynumber: 4.1 Consensus size: 27
75726447 TTATAATTCA
75726457 ATTTTTA-TATTTTTAT-ATTTTT-AT
1 ATTTTTACTATTTTTATAATTTTTAAT
* * *
75726481 A-TATTA-T-TTTTAATAATTTATAAT
1 ATTTTTACTATTTTTATAATTTTTAAT
* *
75726505 -TCTTTTACAATTTTTATGATTTTTTAAT
1 AT-TTTTACTATTTTTAT-AATTTTTAAT
*
75726533 ATTTTTACTATTTTTCATTATTTTT-AT
1 ATTTTTACTATTTTT-ATAATTTTTAAT
75726560 ATTT
1 ATTT
75726564 AAAAAATATT
Statistics
Matches: 63, Mismatches: 11, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
22 6 0.10
23 10 0.16
24 3 0.05
25 4 0.06
27 12 0.19
28 25 0.40
29 3 0.05
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.67
Consensus pattern (27 bp):
ATTTTTACTATTTTTATAATTTTTAAT
Found at i:75729595 original size:2 final size:2
Alignment explanation
Indices: 75729588--75729613 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
75729578 TTTAATTGTA
75729588 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
75729614 GAATGTGCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75733911 original size:3 final size:3
Alignment explanation
Indices: 75733905--75733966 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
75733895 AATAATAATA
*
75733905 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
75733953 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
75733967 ATTTTCATCT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:75734668 original size:1 final size:1
Alignment explanation
Indices: 75734662--75734689 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
75734652 TTCGATTGTG
75734662 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
75734690 CCCATTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:75734930 original size:116 final size:116
Alignment explanation
Indices: 75734795--75735225 Score: 429
Period size: 116 Copynumber: 3.8 Consensus size: 116
75734785 TCTGTTCATG
* *
75734795 TTTTCTGTTTCCAGTTCATTGTACATTTTGCATTTTCCATCCATTGAATGGACTGATGTTTTCGG
1 TTTTCTGTTTCCATTTCATTGTACATTTTGCATTTTCCATCCATTGAATGGAGTGA-GTTTTCGG
*
75734860 G-TTTCCATTTCATTTCTTTCAAGTGTCTGGTCTTTATAATG-TCCGATCGTA
65 GTTTTCCATTTCATTGCTTTCAAGTGTCTGGTCTTTATAATGTTCCG-TCGTA
* * ** * *** *
75734911 TCTTCTGTTTCCATTTCATTTTACGCTTTGTATTTTCCATGGGTTGAATGGAGTGACTTTTCCGG
1 TTTTCTGTTTCCATTTCATTGTACATTTTGCATTTTCCATCCATTGAATGGAGTGAGTTTT-CGG
* * * *
75734976 G-TTTCCATTTCACTGCTTTCAAGTGTCTGGCCTTTATAA-GTTCCGTTGTTG
65 GTTTTCCATTTCATTGCTTTCAAGTGTCTGGTCTTTATAATGTTCCGTCG-TA
* * * *
75735027 TTTTCTGTTT-C----CATT-T-CATTTTGCATTTTTCATCCACTAAATGGAGTGAGTTTTTTGG
1 TTTTCTGTTTCCATTTCATTGTACATTTTGCATTTTCCATCCATTGAATGGAGTGAG-TTTTCGG
* * * * * *
75735085 GTTTTCTAGTTCATTGCTTTCAAATGTCTGCTCTTTGT-ATGTTCTGTTCG-A
65 GTTTTCCATTTCATTGCTTTCAAGTGTCTGGTCTTTATAATGTTCCG-TCGTA
* * * *
75735136 GTTTTCTGATTCCATTTCATTGTACATTTTGCATTTTCTATTCATTGAATGGAGTGAGTTTTTGG
1 -TTTTCTGTTTCCATTTCATTGTACATTTTGCATTTTCCATCCATTGAATGGAGTGAGTTTTCGG
*
75735201 GTTTTCCAATTCATTGCTTTCAAGT
65 GTTTTCCATTTCATTGCTTTCAAGT
75735226 ACTCTTCATA
Statistics
Matches: 253, Mismatches: 47, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
109 28 0.11
110 48 0.19
111 7 0.03
115 12 0.05
116 129 0.51
117 29 0.11
ACGTcount: A:0.16, C:0.18, G:0.17, T:0.49
Consensus pattern (116 bp):
TTTTCTGTTTCCATTTCATTGTACATTTTGCATTTTCCATCCATTGAATGGAGTGAGTTTTCGGG
TTTTCCATTTCATTGCTTTCAAGTGTCTGGTCTTTATAATGTTCCGTCGTA
Found at i:75735186 original size:226 final size:225
Alignment explanation
Indices: 75734818--75735225 Score: 500
Period size: 226 Copynumber: 1.8 Consensus size: 225
75734808 GTTCATTGTA
* * * * *
75734818 CATTTTGCATTTTCCATCCATTGAATGGACTGATGTTTTCGGGTTTCCATTTCATTTCTTTCAAG
1 CATTTTGCATTTTCCATCCACTAAATGGACTGATGTTTTCGGGTTTCCAGTTCATTGCTTTCAAA
* * * * *
75734883 TGTCTGGTCTTTATAATGTCCGATCGTATCTTCTGTTTCCATTTCATTTTACGCTTTGTATTTTC
66 TGTCTGCTCTTTATAATGTCCGATCGTATCTTCTGATTCCATTTCATTGTACACTTTGCATTTTC
** *
75734948 CATGGGTTGAATGGAGTGACTTTTCCGGG-TTTCCATTTCACTGCTTTCAAGTGTCTGGCCTTTA
131 CATGCATTGAATGGAGTGACTTTT-CGGGTTTTCCAATTCACTGCTTTCAAGTGTCTGGCCTTTA
75735012 TAAGTTCCGTTGTTGTTTTCTGTTTCCATTT
195 TAAGTTCCGTTGTTGTTTTCTGTTTCCATTT
* * * *
75735043 CATTTTGCATTTTTCATCCACTAAATGGAGTGA-GTTTTTTGGGTTTTCTAGTTCATTGCTTTCA
1 CATTTTGCATTTTCCATCCACTAAATGGACTGATG-TTTTCGGG-TTTCCAGTTCATTGCTTTCA
* * * * *
75735107 AATGTCTGCTCTTTGT-ATGTTCTGTTCG-AGTTTTCTGATTCCATTTCATTGTACATTTTGCAT
64 AATGTCTGCTCTTTATAATG-TCCGATCGTA-TCTTCTGATTCCATTTCATTGTACACTTTGCAT
* * * * *
75735170 TTTCTATTCATTGAATGGAGTGAGTTTTTGGGTTTTCCAATTCATTGCTTTCAAGT
127 TTTCCATGCATTGAATGGAGTGACTTTTCGGGTTTTCCAATTCACTGCTTTCAAGT
75735226 ACTCTTCATA
Statistics
Matches: 151, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
224 1 0.01
225 43 0.28
226 107 0.71
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.48
Consensus pattern (225 bp):
CATTTTGCATTTTCCATCCACTAAATGGACTGATGTTTTCGGGTTTCCAGTTCATTGCTTTCAAA
TGTCTGCTCTTTATAATGTCCGATCGTATCTTCTGATTCCATTTCATTGTACACTTTGCATTTTC
CATGCATTGAATGGAGTGACTTTTCGGGTTTTCCAATTCACTGCTTTCAAGTGTCTGGCCTTTAT
AAGTTCCGTTGTTGTTTTCTGTTTCCATTT
Found at i:75741178 original size:21 final size:20
Alignment explanation
Indices: 75741140--75741183 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
75741130 ATTTACCTTG
** *
75741140 TTCAGATTGTTGAGGTTCTGT
1 TTCAGATTGCCGAAGTTCT-T
75741161 TTCAGATTGCCGAAGTTCTT
1 TTCAGATTGCCGAAGTTCTT
75741181 TTC
1 TTC
75741184 CAGGATCCTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.45
Consensus pattern (20 bp):
TTCAGATTGCCGAAGTTCTT
Found at i:75742421 original size:31 final size:31
Alignment explanation
Indices: 75742381--75742450 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
75742371 AAACTATTTG
75742381 GTACCTGAGTTTCG-CATTAATGTTCAATTAA
1 GTACCTGAGTTT-GACATTAATGTTCAATTAA
* * * **
75742412 GTACTTGAGTTTGACTTTAATTTTCAATTTG
1 GTACCTGAGTTTGACATTAATGTTCAATTAA
75742443 GTACCTGA
1 GTACCTGA
75742451 CCTTCCTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (31 bp):
GTACCTGAGTTTGACATTAATGTTCAATTAA
Found at i:75750011 original size:11 final size:11
Alignment explanation
Indices: 75749995--75750019 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
75749985 ACATGATTAA
75749995 ATTCAACAACT
1 ATTCAACAACT
75750006 ATTCAACAACT
1 ATTCAACAACT
75750017 ATT
1 ATT
75750020 TGATTCTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (11 bp):
ATTCAACAACT
Found at i:75751301 original size:13 final size:14
Alignment explanation
Indices: 75751268--75751302 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
75751258 ATAATTAAAC
75751268 ATAAAATAAATGAA
1 ATAAAATAAATGAA
*
75751282 ATGAAATAAA-GAA
1 ATAAAATAAATGAA
75751295 ATAAAATA
1 ATAAAATA
75751303 GAAAAAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (14 bp):
ATAAAATAAATGAA
Found at i:75753672 original size:93 final size:93
Alignment explanation
Indices: 75753560--75753731 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75753550 CGCCCATAAG
* *
75753560 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75753625 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75753653 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75753718 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75753732 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75753728 original size:46 final size:46
Alignment explanation
Indices: 75753553--75753728 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75753543 TATAACCCGC
* * *
75753553 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75753599 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75753649 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75753692 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75753729 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75756825 original size:29 final size:29
Alignment explanation
Indices: 75756793--75756922 Score: 158
Period size: 29 Copynumber: 4.5 Consensus size: 29
75756783 ATAGTGAATC
* *
75756793 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTCAACT
*
75756822 CGCACACTTAGTGCTATAAATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTCAACT
75756851 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATA-AATTTTC-AACT
* * *
75756879 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-AATTTTCAACT
75756909 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75756923 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 46 0.51
30 19 0.21
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATAAATTTTCAACT
Found at i:75756902 original size:58 final size:57
Alignment explanation
Indices: 75756792--75756922 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 57
75756782 TATAGTGAAT
* * * *
75756792 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATAAATTTTAAAC
* *
75756850 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATA-AATTTTAAAC
75756908 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
75756923 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
56 2 0.03
57 20 0.31
58 42 0.66
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:75764808 original size:30 final size:30
Alignment explanation
Indices: 75764753--75764883 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
75764743 ATAGTGAATC
*
75764753 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
75764782 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
75764812 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
75764840 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
75764870 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75764884 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:75764863 original size:58 final size:58
Alignment explanation
Indices: 75764752--75764883 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
75764742 TATAGTGAAT
* * * * *
75764752 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
75764811 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
75764869 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
75764884 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:75771847 original size:46 final size:46
Alignment explanation
Indices: 75771780--75771908 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
75771770 TATAACCCGC
* * * *
75771780 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75771826 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75771872 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75771909 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75771927 original size:46 final size:45
Alignment explanation
Indices: 75771788--75771927 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
75771778 GCCCATAAGC
* ** * *
75771788 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
75771834 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
75771880 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
75771926 GA
1 GA
75771928 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:75776313 original size:35 final size:35
Alignment explanation
Indices: 75776263--75776429 Score: 246
Period size: 35 Copynumber: 4.8 Consensus size: 35
75776253 GATTTTCCTC
75776263 ATGGAAAATACCATACCTACGTTTCACAACTCAGT
1 ATGGAAAATACCATACCTACGTTTCACAACTCAGT
* *
75776298 ATGGAAAATATCATACCTACGTTTCACAACTCGGT
1 ATGGAAAATACCATACCTACGTTTCACAACTCAGT
* * *
75776333 ATGGAAAATACCATACCTACGTATCATAGCTCAGT
1 ATGGAAAATACCATACCTACGTTTCACAACTCAGT
* * * *
75776368 ATGGAAAATACCATACCTACGTATCATAGCTCAAT
1 ATGGAAAATACCATACCTACGTTTCACAACTCAGT
75776403 ATGG-AAATACCATACCTACGTTTCACA
1 ATGGAAAATACCATACCTACGTTTCACA
75776430 TTTTTCCATG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
34 21 0.17
35 101 0.83
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (35 bp):
ATGGAAAATACCATACCTACGTTTCACAACTCAGT
Found at i:75777966 original size:16 final size:16
Alignment explanation
Indices: 75777942--75777976 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
75777932 TGAATTACTG
* *
75777942 ATTATAGCTTTATTCC
1 ATTACAGCTCTATTCC
75777958 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
75777974 ATT
1 ATT
75777977 CACCCCAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.46
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:75793768 original size:23 final size:23
Alignment explanation
Indices: 75793732--75793828 Score: 90
Period size: 23 Copynumber: 4.3 Consensus size: 23
75793722 GGACTCACCA
*
75793732 CAGCTCGTATGAGCTTACTGATT
1 CAGCTCGTAAGAGCTTACTGATT
* *
75793755 CAGATCGTAAGAGCTTACTGTTT
1 CAGCTCGTAAGAGCTTACTGATT
* **
75793778 CAGCTCATCGGAGCTTA-TCGATT
1 CAGCTCGTAAGAGCTTACT-GATT
* *
75793801 CAGCTTGAAAGAGCTTACTG-TT
1 CAGCTCGTAAGAGCTTACTGATT
*
75793823 TAGCTC
1 CAGCTC
75793829 TATAAAGCTT
Statistics
Matches: 57, Mismatches: 15, Indels: 5
0.74 0.19 0.06
Matches are distributed among these distances:
22 7 0.12
23 49 0.86
24 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (23 bp):
CAGCTCGTAAGAGCTTACTGATT
Found at i:75793801 original size:46 final size:45
Alignment explanation
Indices: 75793742--75793828 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 45
75793732 CAGCTCGTAT
*
75793742 GAGCTTACTGATTCAGATCGTAAGAGCTTACTGTTTCAGCTCATCG
1 GAGCTTACTGATTCAGATCGAAAGAGCTTACTGTTT-AGCTCATCG
* *
75793788 GAGCTTA-TCGATTCAGCTTGAAAGAGCTTACTGTTTAGCTC
1 GAGCTTACT-GATTCAGATCGAAAGAGCTTACTGTTTAGCTC
75793829 TATAAAGCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
45 6 0.16
46 31 0.84
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (45 bp):
GAGCTTACTGATTCAGATCGAAAGAGCTTACTGTTTAGCTCATCG
Found at i:75797869 original size:52 final size:53
Alignment explanation
Indices: 75797774--75797931 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 53
75797764 CTTAATTTTC
* *
75797774 CCATGTGGTGCCATAACCCACCAATTATGGTCTTATACGATATGGTCTTCTTT
1 CCATGTGATGCCATAACCCACCAGTTATGGTCTTATACGATATGGTCTTCTTT
* * * * * *
75797827 TCATGTGATGCCATAA-CCATCAGTTATGGTTTTATACAATATGATCTTATTT
1 CCATGTGATGCCATAACCCACCAGTTATGGTCTTATACGATATGGTCTTCTTT
* * * **
75797879 CCATATGATGTCATAACCCACCAGTTACGGTCTTGCACGATATGGTCTTCTTT
1 CCATGTGATGCCATAACCCACCAGTTATGGTCTTATACGATATGGTCTTCTTT
75797932 AGTGCCATGG
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
52 43 0.51
53 42 0.49
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (53 bp):
CCATGTGATGCCATAACCCACCAGTTATGGTCTTATACGATATGGTCTTCTTT
Found at i:75801308 original size:25 final size:25
Alignment explanation
Indices: 75801275--75801323 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
75801265 CAAGCGAGCC
75801275 ATATCAGGAAGCTCAAAAAAAGCTT
1 ATATCAGGAAGCTCAAAAAAAGCTT
* * * *
75801300 ATATTAGGACGCTCATAAAGAGCT
1 ATATCAGGAAGCTCAAAAAAAGCT
75801324 GCGTTTGTGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.22
Consensus pattern (25 bp):
ATATCAGGAAGCTCAAAAAAAGCTT
Found at i:75802991 original size:41 final size:41
Alignment explanation
Indices: 75802843--75803131 Score: 262
Period size: 41 Copynumber: 7.0 Consensus size: 41
75802833 TATCTGATAG
* ** *
75802843 AATACACCAGCACAAAGCCTGCTAGGCTTAAGGCCTG-ATAC
1 AATACACCAGCACTAAGCCTGCTAGGCACAAAGCCTGAAT-C
* ** * * * *
75802884 AATACATC-GACAAGAAGCTTGCTAGACTCAAGGCCTG-ATAC
1 AATACACCAG-CACTAAGCCTGCTAGGCACAAAGCCTGAAT-C
* * * *
75802925 AATATACC-GACACGAAGCCTACTAGGCACAAAGCTTGAATC
1 AATACACCAG-CACTAAGCCTGCTAGGCACAAAGCCTGAATC
* ** *
75802966 AATACACCAGTACTAAGTTTGCTAGGCACAAAACCTGAATC
1 AATACACCAGCACTAAGCCTGCTAGGCACAAAGCCTGAATC
*
75803007 AATAACACCGGCACTAAGCCTGCTAGGCACAAAGCCTGAATC
1 AAT-ACACCAGCACTAAGCCTGCTAGGCACAAAGCCTGAATC
* * * *
75803049 AATGCACCAACACTAAGTCTGCTAGACACAAAGCCTGAATC
1 AATACACCAGCACTAAGCCTGCTAGGCACAAAGCCTGAATC
** *
75803090 AATACACCAGCACTAAGCCTATTAGGCACAAAGCTTGAATC
1 AATACACCAGCACTAAGCCTGCTAGGCACAAAGCCTGAATC
75803131 A
1 A
75803132 TTATTTCCAA
Statistics
Matches: 204, Mismatches: 40, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
40 1 0.00
41 164 0.80
42 39 0.19
ACGTcount: A:0.38, C:0.27, G:0.17, T:0.18
Consensus pattern (41 bp):
AATACACCAGCACTAAGCCTGCTAGGCACAAAGCCTGAATC
Found at i:75803047 original size:83 final size:82
Alignment explanation
Indices: 75802924--75803131 Score: 290
Period size: 83 Copynumber: 2.5 Consensus size: 82
75802914 AGGCCTGATA
* * * ** *
75802924 CAATATACCGACACGAAGCCTACTAGGCACAAAGCTTGAATCAATACACCAGTACTAAGTTTGCT
1 CAATACACCGGCACTAAGCCTACTAGGCACAAAGCTTGAATCAATACACCAACACTAAGTCTGCT
*
75802989 AGGCACAAAACCTGAAT
66 AGACACAAAACCTGAAT
* * *
75803006 CAATAACACCGGCACTAAGCCTGCTAGGCACAAAGCCTGAATCAATGCACCAACACTAAGTCTGC
1 CAAT-ACACCGGCACTAAGCCTACTAGGCACAAAGCTTGAATCAATACACCAACACTAAGTCTGC
*
75803071 TAGACACAAAGCCTGAAT
65 TAGACACAAAACCTGAAT
* *
75803089 CAATACACCAGCACTAAGCCTATTAGGCACAAAGCTTGAATCA
1 CAATACACCGGCACTAAGCCTACTAGGCACAAAGCTTGAATCA
75803132 TTATTTCCAA
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
82 39 0.35
83 71 0.65
ACGTcount: A:0.38, C:0.28, G:0.16, T:0.18
Consensus pattern (82 bp):
CAATACACCGGCACTAAGCCTACTAGGCACAAAGCTTGAATCAATACACCAACACTAAGTCTGCT
AGACACAAAACCTGAAT
Found at i:75805579 original size:43 final size:42
Alignment explanation
Indices: 75805513--75805671 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
75805503 ATCTCGTACA
* * *
75805513 ATGCCAACGTCCAAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCATCGTCCCAGACGTGGTCTTACACGTAATCAAATA-TG
**
75805556 ATGCCA-CTGTCCCAGACAG-GGTCTTACACAAAATCAAATATG
1 ATGCCATC-GTCCCAGAC-GTGGTCTTACACGTAATCAAATATG
* ***
75805598 ATGTCATCGTCCCAGACGTGGTCTTACACGTAAATCATAAGCCG
1 ATGCCATCGTCCCAGACGTGGTCTTACACGT-AATCA-AATATG
* * *
75805642 ATGCCAACATCCCAGATGTGGTCTTACACG
1 ATGCCATCGTCCCAGACGTGGTCTTACACG
75805672 AAAACACATA
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 38 0.40
44 30 0.31
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCATCGTCCCAGACGTGGTCTTACACGTAATCAAATATG
Found at i:75806912 original size:21 final size:21
Alignment explanation
Indices: 75806886--75806927 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
75806876 TTCCGACTAG
75806886 GGTCTAAGCCAGACTGTTACA
1 GGTCTAAGCCAGACTGTTACA
*
75806907 GGTCTAAGCCGGACTGTTACA
1 GGTCTAAGCCAGACTGTTACA
75806928 ATAAAAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (21 bp):
GGTCTAAGCCAGACTGTTACA
Found at i:75808979 original size:15 final size:15
Alignment explanation
Indices: 75808961--75808991 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75808951 TTATTCATGT
75808961 TAATCTTGACTTGGA
1 TAATCTTGACTTGGA
75808976 TAATCTTGACTTGGA
1 TAATCTTGACTTGGA
75808991 T
1 T
75808992 TGCCCTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (15 bp):
TAATCTTGACTTGGA
Found at i:75812053 original size:21 final size:21
Alignment explanation
Indices: 75812027--75812068 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75812017 CTACTTGAAC
75812027 TTTTAAAATGTATCAAAAAAA
1 TTTTAAAATGTATCAAAAAAA
* * *
75812048 TTTTAAACTTTTTCAAAAAAA
1 TTTTAAAATGTATCAAAAAAA
75812069 ATTAAACCTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (21 bp):
TTTTAAAATGTATCAAAAAAA
Found at i:75812775 original size:20 final size:20
Alignment explanation
Indices: 75812743--75812784 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
75812733 AGATTGTAAG
75812743 AAAGAAAAGATTAATA-TTAA
1 AAAGAAAAGATT-ATAGTTAA
75812763 AAAGAATAA-ATTATAGTTAA
1 AAAGAA-AAGATTATAGTTAA
75812783 AA
1 AA
75812785 GATAATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 3 0.15
20 15 0.75
21 2 0.10
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (20 bp):
AAAGAAAAGATTATAGTTAA
Found at i:75815084 original size:22 final size:22
Alignment explanation
Indices: 75815059--75815100 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
75815049 CACAATTTTT
75815059 TATTTCATTA-TAATAAAAATTA
1 TATTT-ATTATTAATAAAAATTA
*
75815081 TATTTTTTATTAATAAAAAT
1 TATTTATTATTAATAAAAAT
75815101 ATAAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTTATTATTAATAAAAATTA
Found at i:75816053 original size:117 final size:119
Alignment explanation
Indices: 75815840--75816084 Score: 334
Period size: 117 Copynumber: 2.1 Consensus size: 119
75815830 TTTGGAAACA
* * * ** *
75815840 AGGGTCACACGGCTGTATGGTCAGGCTGTGTGACATAGCCCAAACTGTGTGAGCATTCAAAGTAT
1 AGGGTCACACGGCTATATGGCCAGCCTGTGTGACATAGCCCAAACCATGTGAGCATTCAAAGCAT
*
75815905 GGGACACACGGCTGTGTTGCAGCTCGTGTGTCTGCCAATGTGGGTATTCAAAAT
66 GGGACACACAGCTGTGTTGCAGCTCGTGTGTCTGCCAATGTGGGTATTCAAAAT
* *
75815959 TGGGTCACACGGCTATAT-GCCAAGCCT-TGTGACATAGCCCAAACCATGTGAGCATTCGAAGCA
1 AGGGTCACACGGCTATATGGCC-AGCCTGTGTGACATAGCCCAAACCATGTGAGCATTCAAAGCA
* * * *
75816022 T-GGACACACAGTTGTGTTGCAGCTCGTGTGTCTGCTAGTGTGGGTATTCGAAAT
65 TGGGACACACAGCTGTGTTGCAGCTCGTGTGTCTGCCAATGTGGGTATTCAAAAT
*
75816076 AGGGCCACA
1 AGGGTCACA
75816085 TGGTCGTGTC
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
117 55 0.50
118 35 0.32
119 20 0.18
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (119 bp):
AGGGTCACACGGCTATATGGCCAGCCTGTGTGACATAGCCCAAACCATGTGAGCATTCAAAGCAT
GGGACACACAGCTGTGTTGCAGCTCGTGTGTCTGCCAATGTGGGTATTCAAAAT
Found at i:75816745 original size:22 final size:22
Alignment explanation
Indices: 75816690--75816745 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 22
75816680 GTTTTGGACT
* * *
75816690 TAATTTTTATTATATATGAGCTC
1 TAATTATT-TTATTTATCAGCTC
*
75816713 -AA-TATTGTATTTATCAGCTC
1 TAATTATTTTATTTATCAGCTC
75816733 TAATTATTTTATT
1 TAATTATTTTATT
75816746 ATTTTATTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
20 11 0.42
21 5 0.19
22 10 0.38
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.54
Consensus pattern (22 bp):
TAATTATTTTATTTATCAGCTC
Found at i:75822127 original size:98 final size:98
Alignment explanation
Indices: 75821958--75822156 Score: 398
Period size: 98 Copynumber: 2.0 Consensus size: 98
75821948 AAAAAAGAGC
75821958 TTTCGTAATACACAATTGAATTGGTATAGAAGGCTAATCCACCTCTTTGTAGATTTCAAAAGATA
1 TTTCGTAATACACAATTGAATTGGTATAGAAGGCTAATCCACCTCTTTGTAGATTTCAAAAGATA
75822023 ATGCAGCCATTTACTTCAAAACATAAGATATTA
66 ATGCAGCCATTTACTTCAAAACATAAGATATTA
75822056 TTTCGTAATACACAATTGAATTGGTATAGAAGGCTAATCCACCTCTTTGTAGATTTCAAAAGATA
1 TTTCGTAATACACAATTGAATTGGTATAGAAGGCTAATCCACCTCTTTGTAGATTTCAAAAGATA
75822121 ATGCAGCCATTTACTTCAAAACATAAGATATTA
66 ATGCAGCCATTTACTTCAAAACATAAGATATTA
75822154 TTT
1 TTT
75822157 TAAGTTGGTA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 101 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (98 bp):
TTTCGTAATACACAATTGAATTGGTATAGAAGGCTAATCCACCTCTTTGTAGATTTCAAAAGATA
ATGCAGCCATTTACTTCAAAACATAAGATATTA
Found at i:75822478 original size:14 final size:14
Alignment explanation
Indices: 75822459--75822494 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
75822449 AAAGTAATAG
75822459 CCATAATCATTGTT
1 CCATAATCATTGTT
75822473 CCATAATCATTGTT
1 CCATAATCATTGTT
*
75822487 CCACAATC
1 CCATAATC
75822495 TTCTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.36
Consensus pattern (14 bp):
CCATAATCATTGTT
Found at i:75829567 original size:3 final size:3
Alignment explanation
Indices: 75829548--75829605 Score: 55
Period size: 3 Copynumber: 19.0 Consensus size: 3
75829538 AAGACAGAAA
* * *
75829548 AAT AAT AAG AAT AAAT AAT AAT -AT AAT GAAT AAT AAG AAC AAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
*
75829594 ATT AAT AAT AAT
1 AAT AAT AAT AAT
75829606 GTAATAACTG
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
2 2 0.04
3 37 0.82
4 6 0.13
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:75830622 original size:22 final size:22
Alignment explanation
Indices: 75830592--75830634 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
75830582 TACGAGGATC
*
75830592 TGCTGCATCCAGTAGTACTCTA
1 TGCTACATCCAGTAGTACTCTA
*
75830614 TGCTACATCTAGTAGTACTCT
1 TGCTACATCCAGTAGTACTCT
75830635 GTCTCCAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (22 bp):
TGCTACATCCAGTAGTACTCTA
Found at i:75833806 original size:14 final size:14
Alignment explanation
Indices: 75833787--75833825 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
75833777 TTAAAGCAAG
*
75833787 AATTAAGAATACAT
1 AATTAAGAACACAT
75833801 AATTAAGAACACAT
1 AATTAAGAACACAT
75833815 AATTAAGAACA
1 AATTAAGAACA
75833826 AGTCAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.59, C:0.10, G:0.08, T:0.23
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:75836273 original size:19 final size:19
Alignment explanation
Indices: 75836230--75836266 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
75836220 TTCATACGGT
75836230 CGTGTGGCTACAACACGCC
1 CGTGTGGCTACAACACGCC
*
75836249 CGTGTGGCTGCAACACGC
1 CGTGTGGCTACAACACGC
75836267 TTGTGTGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.16
Consensus pattern (19 bp):
CGTGTGGCTACAACACGCC
Found at i:75839167 original size:46 final size:49
Alignment explanation
Indices: 75839061--75839182 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 49
75839051 TGTCTTCGAC
** * *
75839061 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATATAAT
** * *
75839111 ATGGGTTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATATAAT
*
75839157 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
75839183 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
46 26 0.43
47 1 0.02
48 5 0.08
50 29 0.48
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATATAAT
Found at i:75839188 original size:5 final size:5
Alignment explanation
Indices: 75839178--75839202 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75839168 TGGCTCATTT
75839178 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
75839203 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:75860880 original size:6 final size:6
Alignment explanation
Indices: 75860869--75860893 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75860859 TTATTGACCT
75860869 GTTGTG GTTGTG GTTGTG GTTGTG G
1 GTTGTG GTTGTG GTTGTG GTTGTG G
75860894 GATAATAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (6 bp):
GTTGTG
Found at i:75863119 original size:26 final size:26
Alignment explanation
Indices: 75863090--75863141 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
75863080 CTTTGGTAAG
75863090 TTGCATTCACTCCTCTGGTCTTGGCC
1 TTGCATTCACTCCTCTGGTCTTGGCC
75863116 TTGCATTCACTCCTCTGGTCTTGGCC
1 TTGCATTCACTCCTCTGGTCTTGGCC
75863142 CAGTGTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.08, C:0.35, G:0.19, T:0.38
Consensus pattern (26 bp):
TTGCATTCACTCCTCTGGTCTTGGCC
Found at i:75864771 original size:14 final size:14
Alignment explanation
Indices: 75864752--75864779 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75864742 CGTAAAACTA
75864752 GAAAATTATTTTCC
1 GAAAATTATTTTCC
75864766 GAAAATTATTTTCC
1 GAAAATTATTTTCC
75864780 TGGTAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
GAAAATTATTTTCC
Found at i:75865103 original size:15 final size:17
Alignment explanation
Indices: 75865074--75865111 Score: 62
Period size: 15 Copynumber: 2.4 Consensus size: 17
75865064 CAAAAAAATA
75865074 TAAAAAAATTAATATTT
1 TAAAAAAATTAATATTT
75865091 TAAAAAAA-T-ATATTT
1 TAAAAAAATTAATATTT
75865106 TAAAAA
1 TAAAAA
75865112 TTTAAGACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 12 0.57
16 1 0.05
17 8 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAAAAAATTAATATTT
Found at i:75865477 original size:21 final size:21
Alignment explanation
Indices: 75865451--75865511 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
75865441 AAAAAAATCA
75865451 TTATATGATTTTTATAAAATT
1 TTATATGATTTTTATAAAATT
* * *
75865472 TTATATG-TTTTTGTATCATTT
1 TTATATGATTTTTATA-AAATT
*
75865493 TTATAATTATTTTTATAAA
1 TTAT-ATGATTTTTATAAA
75865512 TATTATCAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 7 0.23
21 14 0.45
22 3 0.10
23 7 0.23
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.61
Consensus pattern (21 bp):
TTATATGATTTTTATAAAATT
Found at i:75867808 original size:25 final size:25
Alignment explanation
Indices: 75867780--75867841 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
75867770 TAAGCTATTC
75867780 CAAGCTAAATAACAGGAAGCTCATG
1 CAAGCTAAATAACAGGAAGCTCATG
** *
75867805 CAAGCTGTATAACGGGAAGCTCATG
1 CAAGCTAAATAACAGGAAGCTCATG
*
75867830 CGAGCTAAATAA
1 CAAGCTAAATAA
75867842 TGAGAAGATC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (25 bp):
CAAGCTAAATAACAGGAAGCTCATG
Found at i:75867836 original size:50 final size:50
Alignment explanation
Indices: 75867782--75867878 Score: 126
Period size: 50 Copynumber: 1.9 Consensus size: 50
75867772 AGCTATTCCA
*
75867782 AGCTAAATAACAG-GAAGCTCATGCAAGCTGTA-TAACGGGAAGCTCATGCG
1 AGCTAAATAA-AGAGAAGATCATGCAAGCTG-AGTAACGGGAAGCTCATGCG
* * *
75867832 AGCTAAATAATGAGAAGATCATGCGAGCTGAGTATCGGGAAGCTCAT
1 AGCTAAATAAAGAGAAGATCATGCAAGCTGAGTAACGGGAAGCTCAT
75867879 AAGAGCTGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
49 2 0.05
50 39 0.95
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.20
Consensus pattern (50 bp):
AGCTAAATAAAGAGAAGATCATGCAAGCTGAGTAACGGGAAGCTCATGCG
Found at i:75867848 original size:25 final size:24
Alignment explanation
Indices: 75867782--75867860 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 24
75867772 AGCTATTCCA
* *
75867782 AGCTAAATAACAGGAAGCTCATGCA
1 AGCTAAATAAGA-GAAGCTCATGCG
** *
75867807 AGCTGTATAACGGGAAGCTCATGCG
1 AGCTAAATAA-GAGAAGCTCATGCG
*
75867832 AGCTAAATAATGAGAAGATCATGCG
1 AGCTAAATAA-GAGAAGCTCATGCG
75867857 AGCT
1 AGCT
75867861 GAGTATCGGG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.19
Consensus pattern (24 bp):
AGCTAAATAAGAGAAGCTCATGCG
Found at i:75867873 original size:25 final size:24
Alignment explanation
Indices: 75867794--75867878 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 24
75867784 CTAAATAACA
* *
75867794 GGAAGCTCATGCAAGCTGTATAACG
1 GGAAGCTCATGCGAGCTG-ATATCG
*
75867819 GGAAGCTCATGCGAGCTAAATAAT-G
1 GGAAGCTCATGCGAGCT-GAT-ATCG
* *
75867844 AGAAGATCATGCGAGCTGAGTATCG
1 GGAAGCTCATGCGAGCTGA-TATCG
75867869 GGAAGCTCAT
1 GGAAGCTCAT
75867879 AAGAGCTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
24 3 0.06
25 44 0.92
26 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (24 bp):
GGAAGCTCATGCGAGCTGATATCG
Found at i:75869365 original size:2 final size:2
Alignment explanation
Indices: 75869360--75869387 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
75869350 CTTTTAATGA
75869360 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75869388 TAAGTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75869926 original size:20 final size:19
Alignment explanation
Indices: 75869894--75869966 Score: 57
Period size: 18 Copynumber: 3.9 Consensus size: 19
75869884 AATTTAAATT
75869894 TTTTATATTTTTATAATAA
1 TTTTATATTTTTATAATAA
75869913 TTTTAT-TTTATT-T-ATAA
1 TTTTATATTT-TTATAATAA
*
75869930 TTTTTTGACTTTTTATAAT--
1 TTTTAT-A-TTTTTATAATAA
*
75869949 TTTTAAATTTTTTATAAT
1 TTTTATA-TTTTTATAAT
75869967 TTCAAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
17 9 0.20
18 15 0.34
19 14 0.32
20 4 0.09
21 2 0.05
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (19 bp):
TTTTATATTTTTATAATAA
Found at i:75869944 original size:18 final size:18
Alignment explanation
Indices: 75869923--75869968 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
75869913 TTTTATTTTA
**
75869923 TTTATAATTTTTTGACTT
1 TTTATAATTTTTAAACTT
*
75869941 TTTATAATTTTTAAATTT
1 TTTATAATTTTTAAACTT
75869959 TTTATAATTT
1 TTTATAATTT
75869969 CAAAAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTATAATTTTTAAACTT
Found at i:75869991 original size:16 final size:17
Alignment explanation
Indices: 75869972--75870003 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
75869962 ATAATTTCAA
75869972 AAAAAAATT-ATTTTTC
1 AAAAAAATTGATTTTTC
75869988 AAAAAAATTGATTTTT
1 AAAAAAATTGATTTTT
75870004 TTTTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (17 bp):
AAAAAAATTGATTTTTC
Found at i:75869993 original size:17 final size:18
Alignment explanation
Indices: 75869966--75870003 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
75869956 TTTTTTATAA
75869966 TTTCAAAAAAAAATT-ATT
1 TTTC-AAAAAAAATTGATT
75869984 TTTC-AAAAAAATTGATT
1 TTTCAAAAAAAATTGATT
75870001 TTT
1 TTT
75870004 TTTTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 9 0.47
17 6 0.32
18 4 0.21
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (18 bp):
TTTCAAAAAAAATTGATT
Found at i:75878222 original size:12 final size:12
Alignment explanation
Indices: 75878205--75878229 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75878195 AACGACACAC
75878205 GCCCATGTGCTA
1 GCCCATGTGCTA
75878217 GCCCATGTGCTA
1 GCCCATGTGCTA
75878229 G
1 G
75878230 GCCGTATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.28, T:0.24
Consensus pattern (12 bp):
GCCCATGTGCTA
Found at i:75880426 original size:38 final size:38
Alignment explanation
Indices: 75880347--75880541 Score: 212
Period size: 38 Copynumber: 5.0 Consensus size: 38
75880337 AAACCCAAAC
* * * * *
75880347 ATAACACCAGCATGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* * *
75880387 ATAATACTAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
75880425 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * *
75880463 ATATTACCAGCACGAAGCTTGCGGGATTTAACCTGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * *
75880501 ATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGAT
75880541 A
1 A
75880542 CACATCAAAT
Statistics
Matches: 132, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
37 1 0.01
38 96 0.73
39 8 0.06
40 27 0.20
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:75883978 original size:40 final size:40
Alignment explanation
Indices: 75883912--75884078 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
75883902 AAATTGAATG
* * *
75883912 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
75883951 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
75883991 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
75884031 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
75884071 ATATCCGG
1 ATATCCGG
75884079 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:75891181 original size:40 final size:40
Alignment explanation
Indices: 75891115--75891281 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
75891105 AAATTGAATG
* * *
75891115 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
75891154 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
75891194 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* ** *
75891234 CTATCCGGGCTAAGACCCGAAGGC-ATATGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAAT-TGTGCTGGTAATT
75891274 ATATCCGG
1 ATATCCGG
75891282 TTATATTCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
39 16 0.15
40 89 0.84
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:75893462 original size:9 final size:9
Alignment explanation
Indices: 75893448--75893523 Score: 91
Period size: 9 Copynumber: 8.4 Consensus size: 9
75893438 ATAAGTATAA
75893448 AATTAACCG
1 AATTAACCG
*
75893457 AATTAATCG
1 AATTAACCG
75893466 AATTAACCG
1 AATTAACCG
*
75893475 AATTATCCG
1 AATTAACCG
*
75893484 AATT-ACCC
1 AATTAACCG
75893492 ATATTAACCG
1 A-ATTAACCG
75893502 AATTAACCG
1 AATTAACCG
* *
75893511 AATCAACCA
1 AATTAACCG
75893520 AATT
1 AATT
75893524 TTTTGTATAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
8 3 0.05
9 49 0.88
10 4 0.07
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:75894542 original size:40 final size:40
Alignment explanation
Indices: 75894495--75894816 Score: 394
Period size: 40 Copynumber: 8.1 Consensus size: 40
75894485 ACACACTAGG
* * * *
75894495 CAGAAGCTCATAAGAGCTAATCCAGCCAAAACACACCAAA
1 CAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAA
* * * * *
75894535 CAAAAGCTCATAAGAGTTTATCCAACCGAAAAACGCAAAA
1 CAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAA
* *
75894575 CAGAAGCTCATAAGAGCCGATCCAATCGAAACACGCCAAA
1 CAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAA
* * *
75894615 CAGAAGCTCATAAGAGCCGATCCAATCGAAACATGCCAAA
1 CAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAA
* * * * *
75894655 AAGAAGCTCATAAGAGCTGATCCAGCCGAAACTCACTAAA
1 CAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAA
* * * *
75894695 TAGAAGCTCATAAGAGTTGATCCAATCGAAACACGCTAAA
1 CAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAA
* *
75894735 CAGAAGCTCATAAGAGCTTG-TCTAACAGAAACACGCCAAA
1 CAGAAGCTCATAAGAGC-TGATCCAACCGAAACACGCCAAA
*
75894775 CAGAAGCTCATAAGAGCTGATCCAACCGAAACATGCCAAA
1 CAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAA
75894815 CA
1 CA
75894817 AAGAGTATAA
Statistics
Matches: 241, Mismatches: 39, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
39 2 0.01
40 237 0.98
41 2 0.01
ACGTcount: A:0.44, C:0.26, G:0.16, T:0.14
Consensus pattern (40 bp):
CAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAA
Found at i:75899607 original size:14 final size:14
Alignment explanation
Indices: 75899588--75899618 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
75899578 CCTGTATTTG
75899588 TTGTAGCTTACATT
1 TTGTAGCTTACATT
75899602 TTGTAGCTTACATT
1 TTGTAGCTTACATT
75899616 TTG
1 TTG
75899619 ACCCACAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.13, G:0.16, T:0.52
Consensus pattern (14 bp):
TTGTAGCTTACATT
Found at i:75909938 original size:23 final size:21
Alignment explanation
Indices: 75909912--75909962 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 21
75909902 TAAAACAGGG
75909912 CACACGCCTATGTGGAAG-GTTAA
1 CACAC-CC-ATGTGGAAGAG-TAA
75909935 CACACCCATGTGGAAGAGTAA
1 CACACCCATGTGGAAGAGTAA
75909956 CACACCC
1 CACACCC
75909963 GTGTCCCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 19 0.70
22 3 0.11
23 5 0.19
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (21 bp):
CACACCCATGTGGAAGAGTAA
Found at i:75911117 original size:45 final size:46
Alignment explanation
Indices: 75911006--75911131 Score: 141
Period size: 50 Copynumber: 2.7 Consensus size: 46
75910996 CATGGGTAAG
** *
75911006 GTGCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTTTCACATTTTC
1 GTGCCGATGC-ATGTCCCAGACATGGTCTT--AC-GGCTGACACATTATC
75911056 GTGCCGATGCCATGTCCCAGACATGGTCTTAC-GCTGACACA-TATC
1 GTGCCGATG-CATGTCCCAGACATGGTCTTACGGCTGACACATTATC
*
75911101 GTAGCCTATGCATGTCCCAGACAT-GTCTTAC
1 GT-GCCGATGCATGTCCCAGACATGGTCTTAC
75911132 ACTGGCTTAC
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
44 7 0.10
45 19 0.27
46 13 0.19
48 2 0.03
50 28 0.40
51 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
GTGCCGATGCATGTCCCAGACATGGTCTTACGGCTGACACATTATC
Found at i:75911168 original size:46 final size:46
Alignment explanation
Indices: 75911108--75911279 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
75911098 ATCGTAGCCT
* * *
75911108 ATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCCCGAGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCACGAGGCCG
* * **
75911154 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATACCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCACGAGGCCG
* * * *
75911200 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCACGAGGCCG
*
75911248 ATTCATGTCCCAGACATGTCTTACACTAGCTC
1 ATGCATGTCCCAGACATGTCTTACACTAGCTC
75911280 ACATGTATGA
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
46 56 0.52
47 29 0.27
48 23 0.21
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCACGAGGCCG
Found at i:75911664 original size:30 final size:29
Alignment explanation
Indices: 75911618--75911674 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
75911608 AAATTCACAT
* *
75911618 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAAAGACCATTTT-CCCCTAGA
75911648 CTTTGGCAAAAAGACCATTTTCCCCTA
1 CTTTGGCAAAAAGACCATTTTCCCCTA
75911675 TATTCGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (29 bp):
CTTTGGCAAAAAGACCATTTTCCCCTAGA
Found at i:75917579 original size:42 final size:42
Alignment explanation
Indices: 75917516--75917642 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
75917506 ACTTTTTTTC
* * *
75917516 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACAT-A
* * *
75917559 T-GATGCCATAGCCCAGCTATGGTCTTACATATATTCATATA
1 TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACATA
75917600 TCGATGCCATAGCTCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCTCAGCTATGGTCTTACAC-ATATTCACATA
75917641 TC
1 TC
75917643 TCACAGATGC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 10 0.14
42 61 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACATA
Found at i:75917702 original size:47 final size:46
Alignment explanation
Indices: 75917601--75917724 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
75917591 ATTCATATAT
* * * * * *
75917601 CGATGCCATAGCTCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
75917647 AGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
75917694 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
75917725 GAAATCACTT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 26 0.39
47 41 0.61
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:75917784 original size:31 final size:31
Alignment explanation
Indices: 75917749--75917959 Score: 316
Period size: 31 Copynumber: 6.8 Consensus size: 31
75917739 CTTGTCACTT
* *
75917749 GTAGCCGAAGCTACCACTATTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
75917780 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
75917811 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
75917842 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
75917873 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
75917904 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
75917935 GTAACTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
75917960 TGTCATTTGT
Statistics
Matches: 169, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
30 3 0.02
31 164 0.97
32 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:75920012 original size:40 final size:40
Alignment explanation
Indices: 75919957--75920173 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
75919947 TGGATGATAA
* * *
75919957 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
75919997 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
75920037 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75920077 CCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
75920117 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
75920156 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75920174 TACTTGGCTT
Statistics
Matches: 161, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 15 0.09
39 17 0.11
40 129 0.80
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75923974 original size:40 final size:40
Alignment explanation
Indices: 75923891--75924098 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
75923881 CGGGATTTAA
* * * * * *
75923891 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
75923931 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
75923971 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
75924011 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
75924051 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
75924091 CCGGATAT
1 CCGGATAT
75924099 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75924011 original size:80 final size:80
Alignment explanation
Indices: 75923917--75924098 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
75923907 GCTCGATTGT
* * *** * * * **
75923917 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
75923982 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
75923997 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
75924062 TACTAGCATAATTGC
66 AACTAGCACAAATGC
75924077 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
75924099 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:75932024 original size:40 final size:40
Alignment explanation
Indices: 75931941--75932148 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
75931931 CGGGATTTAA
* * * * * *
75931941 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
75931981 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
75932021 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
75932061 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
75932101 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
75932141 CCGGATAT
1 CCGGATAT
75932149 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75932061 original size:80 final size:80
Alignment explanation
Indices: 75931967--75932148 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
75931957 GCTCGATTGT
* * *** * * * **
75931967 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
75932032 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
75932047 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
75932112 TACTAGCATAATTGC
66 AACTAGCACAAATGC
75932127 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
75932149 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:75934485 original size:28 final size:28
Alignment explanation
Indices: 75934453--75934522 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
75934443 AATGAGATTG
75934453 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
75934481 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
75934509 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75934523 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:75940928 original size:2 final size:2
Alignment explanation
Indices: 75940921--75940946 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
75940911 TGAATATTGA
75940921 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
75940947 TGTTATAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75941702 original size:40 final size:40
Alignment explanation
Indices: 75941647--75941863 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
75941637 TGGATGATAA
* *
75941647 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-TAT
*
75941687 CCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * *
75941727 CCGGGCGAAGTCCCGAAGGCATTTGTGCAAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
75941767 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * *
75941807 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
* *
75941846 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75941864 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
38 15 0.09
39 17 0.11
40 128 0.80
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:75945774 original size:6 final size:6
Alignment explanation
Indices: 75945742--75945808 Score: 50
Period size: 6 Copynumber: 11.2 Consensus size: 6
75945732 CCTTTTTCTT
* * *
75945742 TTTTTA TTGTTA TTATTTT TTTATTA TTTTTA TTCCTTA TTTTTA --TTTA
1 TTTTTA TTTTTA TT-TTTA TTT-TTA TTTTTA TT-TTTA TTTTTA TTTTTA
*
75945791 -TTTTA TTTTTA CTTTTA T
1 TTTTTA TTTTTA TTTTTA T
75945809 CCATTTTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
4 4 0.08
5 4 0.08
6 26 0.54
7 14 0.29
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:75945774 original size:17 final size:17
Alignment explanation
Indices: 75945734--75945775 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
75945724 CTATTTACCC
* *
75945734 TTTTTCTTTTTTTATTG
1 TTTTTATTTTTTTATTA
*
75945751 TTATTATTTTTTTATTA
1 TTTTTATTTTTTTATTA
75945768 TTTTTATT
1 TTTTTATT
75945776 CCTTATTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.81
Consensus pattern (17 bp):
TTTTTATTTTTTTATTA
Found at i:75945790 original size:17 final size:15
Alignment explanation
Indices: 75945754--75945801 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
75945744 TTTATTGTTA
*
75945754 TTATTT-TTTTATTA
1 TTATTTATTTTATTT
75945768 TT-TTTATTCCTTATTT
1 TTATTTATT--TTATTT
75945784 TTATTTATTTTATTT
1 TTATTTATTTTATTT
75945799 TTA
1 TTA
75945802 CTTTTATCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 3 0.10
14 4 0.14
15 9 0.31
16 7 0.24
17 6 0.21
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTTATTTTATTT
Found at i:75945792 original size:34 final size:33
Alignment explanation
Indices: 75945745--75945808 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
75945735 TTTTCTTTTT
*
75945745 TTATTGTTATTATTTT-TTTATTATTTTTATTCC
1 TTATTGTTATTATTTTATTT-TTACTTTTATTCC
*
75945778 TTATTTTTATTTATTTTATTTTTACTTTTAT
1 TTATTGTTA-TTATTTTATTTTTACTTTTAT
75945809 CCATTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 8 0.30
34 16 0.59
35 3 0.11
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.75
Consensus pattern (33 bp):
TTATTGTTATTATTTTATTTTTACTTTTATTCC
Found at i:75948624 original size:42 final size:43
Alignment explanation
Indices: 75948568--75948676 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
75948558 TTTGCGTGTG
*
75948568 AGACCATGTCTGGGACATTGGCATC-ATATCTGAATT-CATGTA
1 AGACCATGTCTGGGACAGTGGCATCGATATCTG-ATTACATGTA
* * * *
75948610 AGACCCTGTTTGGGACAGTGGCATCGATGTTTGATTACATGTA
1 AGACCATGTCTGGGACAGTGGCATCGATATCTGATTACATGTA
* *
75948653 AGACCATTTCTAGGAC-GTTGGCAT
1 AGACCATGTCTGGGACAG-TGGCAT
75948677 TGTATATGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 26 0.47
43 29 0.53
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
AGACCATGTCTGGGACAGTGGCATCGATATCTGATTACATGTA
Found at i:75951008 original size:21 final size:21
Alignment explanation
Indices: 75950984--75951035 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 21
75950974 TTATGCACCA
75950984 ATATGCTCTTTGTGCGCTAGG
1 ATATGCTCTTTGTGCGCTAGG
75951005 ATATG-T-TTTGTGCGCTAGG
1 ATATGCTCTTTGTGCGCTAGG
*
75951024 -T-TGCACTTTGTG
1 ATATGCTCTTTGTG
75951036 TGCCAAGATG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 2 0.07
18 1 0.04
19 19 0.68
20 1 0.04
21 5 0.18
ACGTcount: A:0.13, C:0.15, G:0.29, T:0.42
Consensus pattern (21 bp):
ATATGCTCTTTGTGCGCTAGG
Found at i:75953239 original size:70 final size:69
Alignment explanation
Indices: 75953163--75953302 Score: 235
Period size: 70 Copynumber: 2.0 Consensus size: 69
75953153 TCCAAACTTG
* *
75953163 GTCGATTTGTTTTAAACAATATTATAATGTTGTGAAATGAATGCTTTTATAAAAGAAAATTTTGG
1 GTCGATTTGTTTTAAACAACATTAGAATGTTGTGAAATGAATGCTTTTATAAAA-AAAATTTTGG
75953228 TTTAA
65 TTTAA
* *
75953233 GTCGATTTGTTTTAAACAACATTAGAATGTTGTGAAATGAATGTTTTTATGAAAAAAATTTTGGT
1 GTCGATTTGTTTTAAACAACATTAGAATGTTGTGAAATGAATGCTTTTATAAAAAAAATTTTGGT
75953298 TTAA
66 TTAA
75953302 G
1 G
75953303 CTTGAAATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
69 16 0.24
70 50 0.76
ACGTcount: A:0.36, C:0.04, G:0.17, T:0.42
Consensus pattern (69 bp):
GTCGATTTGTTTTAAACAACATTAGAATGTTGTGAAATGAATGCTTTTATAAAAAAAATTTTGGT
TTAA
Found at i:75967288 original size:40 final size:40
Alignment explanation
Indices: 75967231--75967314 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
75967221 ACACTCCATA
*
75967231 CCAAGACTCGACGATCAAGTCGGGTGTAGAGAGTTACACT
1 CCAAGACTCGACGATCAAGTCGAGTGTAGAGAGTTACACT
* * *
75967271 CCAAGAC-CTGACTATCAAGTCGAGTGTAGAGTGTTCCACT
1 CCAAGACTC-GACGATCAAGTCGAGTGTAGAGAGTTACACT
75967311 CCAA
1 CCAA
75967315 CTGATCTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.03
40 38 0.97
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (40 bp):
CCAAGACTCGACGATCAAGTCGAGTGTAGAGAGTTACACT
Found at i:75970877 original size:42 final size:42
Alignment explanation
Indices: 75970828--75970912 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
75970818 ATAAAGGAAC
75970828 TAATCTATGTTACTTTTTCTTTTTTGCCTTATTGATAGCTAA
1 TAATCTATGTTACTTTTTCTTTTTTGCCTTATTGATAGCTAA
75970870 TAATCTATGTTACTTTTTCTTTTTTGCCTTATTGATAGCTAA
1 TAATCTATGTTACTTTTTCTTTTTTGCCTTATTGATAGCTAA
75970912 T
1 T
75970913 CTATATTAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.21, C:0.14, G:0.09, T:0.55
Consensus pattern (42 bp):
TAATCTATGTTACTTTTTCTTTTTTGCCTTATTGATAGCTAA
Found at i:75973785 original size:2 final size:2
Alignment explanation
Indices: 75973778--75973804 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
75973768 CAAATTTCTC
75973778 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
75973805 CTACCTTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:75976405 original size:81 final size:81
Alignment explanation
Indices: 75976270--75976427 Score: 298
Period size: 81 Copynumber: 2.0 Consensus size: 81
75976260 GTTTTGATTT
75976270 GTTTGGGAAAAACTAATAACAGTCTCATTAAACTTCTTTAGAGTAATAAGATCAAAAATCAAATA
1 GTTTGGGAAAAACTAATAACAGTCTCATTAAACTTCTTTAGAGTAATAAGATCAAAAATCAAATA
75976335 CCTTTGAAAAGAGTAA
66 CCTTTGAAAAGAGTAA
* *
75976351 GTTTGGGAAAAACTAATAACAGTCTCGTTAAACTTCTTTGGAGTAATAAGATCAAAAATCAAATA
1 GTTTGGGAAAAACTAATAACAGTCTCATTAAACTTCTTTAGAGTAATAAGATCAAAAATCAAATA
75976416 CCTTTGAAAAGA
66 CCTTTGAAAAGA
75976428 CTAGGTTCGA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (81 bp):
GTTTGGGAAAAACTAATAACAGTCTCATTAAACTTCTTTAGAGTAATAAGATCAAAAATCAAATA
CCTTTGAAAAGAGTAA
Found at i:75980904 original size:40 final size:40
Alignment explanation
Indices: 75980810--75981034 Score: 253
Period size: 40 Copynumber: 5.6 Consensus size: 40
75980800 TATTCGAATG
*
75980810 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
75980851 ATAACCAGACTAAGATCCGAAGGCATTCGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCT-AG-TGACT
* *
75980891 ATATCCGGGCTAAGA-CCTGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* *
75980931 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
75980971 ATATCCGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
75981011 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
75981035 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
39 3 0.02
40 124 0.78
41 30 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:75980981 original size:80 final size:80
Alignment explanation
Indices: 75980810--75981070 Score: 296
Period size: 80 Copynumber: 3.3 Consensus size: 80
75980800 TATTCGAATG
* * * * *
75980810 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
75980875 ATTCGTGTGAGTTGCT
65 ATTCGTGTGAGTCGCT
* * * *
75980891 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
75980956 TTTGTGCT-AG-CGACT
66 TTCGTG-TGAGTCG-CT
* * *
75980971 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
** * *
75981036 TT-GTGCAAGTAGTT
66 TTCGTGTGAGTCGCT
*
75981050 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
75981071 ATTACTTGAG
Statistics
Matches: 154, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
78 14 0.09
79 13 0.08
80 95 0.62
81 32 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGTGAGTCGCT
Found at i:75981024 original size:120 final size:121
Alignment explanation
Indices: 75980810--75981034 Score: 307
Period size: 120 Copynumber: 1.9 Consensus size: 121
75980800 TATTCGAATG
* * *
75980810 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
* *
75980875 ATTCGTGTGAGTTGCTATATCCGGGCTAAGACCTGAAGGCATTTGTGCTAGCGATT
66 ATTCGTGTGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
75980931 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGAT-CCGAAGG
75980994 CA-TC-TGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
65 CATTCGTGTG--AGTTG-CCATATCCGGGCTAAGACCCGAAGGC
75981035 CTTGTGCAAG
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
118 4 0.04
119 5 0.05
120 51 0.55
121 32 0.35
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
ATTCGTGTGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Done.