Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 245 of 438
Found at i:75983502 original size:20 final size:21
Alignment explanation
Indices: 75983460--75983504 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
75983450 CATGCTTCCA
**
75983460 ATTAAAATATGTATTTCATGC
1 ATTAAAATATGTATTGAATGC
75983481 ATTAAAATATGT-TTGAATGC
1 ATTAAAATATGTATTGAATGC
75983501 ATTA
1 ATTA
75983505 GAATTAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (21 bp):
ATTAAAATATGTATTGAATGC
Found at i:75983980 original size:15 final size:16
Alignment explanation
Indices: 75983948--75983981 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
75983938 AGTTCATCTC
*
75983948 ATTTGCATTTAGGTTA
1 ATTTGCATCTAGGTTA
75983964 ATTTGCATCTA-GTTA
1 ATTTGCATCTAGGTTA
75983979 ATT
1 ATT
75983982 AATTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (16 bp):
ATTTGCATCTAGGTTA
Found at i:75987146 original size:39 final size:40
Alignment explanation
Indices: 75987099--75987242 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
75987089 AATGTTCGAG
75987099 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
75987138 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* ** *
75987177 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
75987217 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
75987243 GTTTGAACGA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:75994183 original size:51 final size:51
Alignment explanation
Indices: 75994122--75994279 Score: 235
Period size: 51 Copynumber: 3.1 Consensus size: 51
75994112 ACTTCTGATC
* * *
75994122 AGTGACAAGTGATAAGTGGTAGCCTCACCTACACTTATTTGATTAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
* * *
75994173 AGTGACAAGTGATAAGTGGTAGTCTCAGCTACACTTATCTAATCAATGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
* * *
75994224 AGTCACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
75994275 AGTGA
1 AGTGA
75994280 TAAATGTGAT
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 94 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
Found at i:76002462 original size:46 final size:45
Alignment explanation
Indices: 76002393--76002566 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
76002383 GTAACCCGCC
76002393 CCTAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGCGTTCACAT
76002438 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACAT
* * * ** * *
76002488 -CTCA-CGAACTCGGACTCAACTCAACAAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
76002531 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
76002567 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 6 0.06
46 56 0.52
47 26 0.24
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
Found at i:76002512 original size:93 final size:93
Alignment explanation
Indices: 76002400--76002570 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
76002390 GCCCCTAAGT
* ** *
76002400 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAG-TTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCA
76002464 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
76002493 GAACTCGGACTCAACTCAACAAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
76002558 CGAGTTCGGATGC
66 CGAGTTCGGATGC
76002571 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGTTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:76009773 original size:39 final size:39
Alignment explanation
Indices: 76009713--76009993 Score: 300
Period size: 39 Copynumber: 7.2 Consensus size: 39
76009703 TAATTATACT
* * *** *
76009713 TGATTGCACATACGTGTCCCTGTTGTACTACAGTATCCC
1 TGATCGCACATACGTGCCCCTGTTGTACTTTGGTACCCC
76009752 TGATCGCACATACGTGCCCCTGTTGTACTTTGGTACCCC
1 TGATCGCACATACGTGCCCCTGTTGTACTTTGGTACCCC
* ** * *
76009791 TGATCGCACATACATATCCCTGGTT-TACTTCGGTACCCT
1 TGATCGCACATACGTGCCCCT-GTTGTACTTTGGTACCCC
* *
76009830 TGATTGCACATACTTG-CCCTGGTTGTACTTTGGTACCCC
1 TGATCGCACATACGTGCCCCT-GTTGTACTTTGGTACCCC
* *
76009869 TGATCGCACATATGTGCCCCTGTTGCACTTAT--TACCCC
1 TGATCGCACATACGTGCCCCTGTTGTACTT-TGGTACCCC
** * *
76009907 TGATCATACATACGTGCCCCTATTGTACTTTGGTAACCC
1 TGATCGCACATACGTGCCCCTGTTGTACTTTGGTACCCC
* * *
76009946 TGATCGAACATACGTGCCCCTGTTGTACTTCGGTACCCT
1 TGATCGCACATACGTGCCCCTGTTGTACTTTGGTACCCC
*
76009985 TGATTGCAC
1 TGATCGCAC
76009994 TTATGTGTTT
Statistics
Matches: 202, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.00
38 39 0.19
39 154 0.76
40 8 0.04
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (39 bp):
TGATCGCACATACGTGCCCCTGTTGTACTTTGGTACCCC
Found at i:76009888 original size:20 final size:20
Alignment explanation
Indices: 76009865--76009927 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 20
76009855 TACTTTGGTA
76009865 CCCCTGATCGCACATATGTG
1 CCCCTGATCGCACATATGTG
* * *
76009885 CCCCTG-TTGCACTTAT-TA
1 CCCCTGATCGCACATATGTG
** *
76009903 CCCCTGATCATACATACGTG
1 CCCCTGATCGCACATATGTG
76009923 CCCCT
1 CCCCT
76009928 ATTGTACTTT
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
18 7 0.22
19 13 0.41
20 12 0.38
ACGTcount: A:0.19, C:0.38, G:0.14, T:0.29
Consensus pattern (20 bp):
CCCCTGATCGCACATATGTG
Found at i:76014530 original size:45 final size:46
Alignment explanation
Indices: 76014367--76014541 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
76014357 TGGTTGAGCA
*
76014367 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
76014413 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
76014458 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
76014506 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76014542 GTGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:76021991 original size:46 final size:46
Alignment explanation
Indices: 76021941--76022116 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
76021931 TGGTTGAGCA
76021941 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76021987 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
76022032 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76022080 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76022117 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76022097 original size:93 final size:93
Alignment explanation
Indices: 76021938--76022109 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76021928 GGATGGTTGA
* *
76021938 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76022003 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
76022031 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76022096 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
76022110 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76032885 original size:13 final size:13
Alignment explanation
Indices: 76032867--76032892 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76032857 TAAGGGGAGT
76032867 TGAAAATCAAGTA
1 TGAAAATCAAGTA
76032880 TGAAAATCAAGTA
1 TGAAAATCAAGTA
76032893 GCTGATAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (13 bp):
TGAAAATCAAGTA
Found at i:76041021 original size:30 final size:29
Alignment explanation
Indices: 76040927--76041028 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
76040917 TATAGTGAAT
* * *
76040927 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
76040956 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
76040984 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
76041014 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76041029 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:76044114 original size:30 final size:30
Alignment explanation
Indices: 76044059--76044189 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
76044049 ATAGTGAATC
*
76044059 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
76044088 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
76044118 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
76044146 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
76044176 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76044190 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:76044169 original size:58 final size:58
Alignment explanation
Indices: 76044058--76044189 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
76044048 TATAGTGAAT
* * * * *
76044058 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
76044117 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
76044175 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76044190 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:76053990 original size:30 final size:30
Alignment explanation
Indices: 76053954--76054084 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
76053944 GACAAGATTG
* * * * *
76053954 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
76053984 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
76054012 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
76054042 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
76054071 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76054085 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:76054045 original size:58 final size:58
Alignment explanation
Indices: 76053954--76054084 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
76053944 GACAAGATTG
* * * * * *
76053954 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
76054012 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
76054071 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76054085 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:76056554 original size:40 final size:40
Alignment explanation
Indices: 76056414--76056554 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
76056404 TAGACAAAAT
* **
76056414 CTTC-GGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGC
1 CTTCGGGTCTTAGCCCGGATATAACCAC-CAGCAC-AATTGC
* *
76056453 CTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGC
1 CTTCGGGTCTTAGCCCGGATATAACCACCAGCACAATTGC
* *** * *
76056493 CTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGT
1 CTTCGGGTCTTAGCCCGGATATAACCACCAGCACAATTGC
*
76056533 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
76056555 CATTCAATTT
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 6 0.07
40 78 0.93
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACCACCAGCACAATTGC
Found at i:76064432 original size:40 final size:40
Alignment explanation
Indices: 76064387--76064554 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
76064377 CGGAATATAA
76064387 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
76064427 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
76064467 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
76064507 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76064547 CCGGATAT
1 CCGGATAT
76064555 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76069845 original size:46 final size:46
Alignment explanation
Indices: 76069795--76069923 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
76069785 TGGTTGAGCA
*
76069795 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
76069841 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
76069887 CCCGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76069924 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:76073142 original size:42 final size:43
Alignment explanation
Indices: 76073029--76073144 Score: 157
Period size: 43 Copynumber: 2.7 Consensus size: 43
76073019 AGCTCATACA
*
76073029 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
* *
76073072 ATGCC-ACTATCCCAGACAG-GGTCATACATGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATCAAATATCG
*
76073114 ATGCCAACGTCCTAGACGTGGTCTTACATGA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGA
76073145 TAACACATGT
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
41 1 0.02
42 26 0.41
43 35 0.56
44 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
Found at i:76080772 original size:12 final size:12
Alignment explanation
Indices: 76080755--76080784 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
76080745 CAGGTTTCCA
*
76080755 AAAATGGAAATG
1 AAAATGGAAACG
76080767 AAAATGGAAACG
1 AAAATGGAAACG
76080779 AAAATG
1 AAAATG
76080785 ATTCGTTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.60, C:0.03, G:0.23, T:0.13
Consensus pattern (12 bp):
AAAATGGAAACG
Found at i:76083943 original size:22 final size:22
Alignment explanation
Indices: 76083915--76083966 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
76083905 AAGTCTACCA
76083915 AATTAAACAATAAGACTTACAG
1 AATTAAACAATAAGACTTACAG
*
76083937 AATTAAACAATAAGACTTACCG
1 AATTAAACAATAAGACTTACAG
76083959 AATTAAAC
1 AATTAAAC
76083967 CTAATAATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (22 bp):
AATTAAACAATAAGACTTACAG
Found at i:76092136 original size:53 final size:53
Alignment explanation
Indices: 76091962--76092163 Score: 188
Period size: 53 Copynumber: 3.8 Consensus size: 53
76091952 GTCATGACAT
* * * * *
76091962 TACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGA
1 TACCATGTAAGACCATGCCAAGACATGACAATGGTAAG-TTCACAAGGCAAGGA
* * * * * * * * *
76092016 AATCATGTAAGACCATGTCAAGACAAGACATTGGTAAACTACTATAAGGCAAAGA
1 TACCATGTAAGACCATGCCAAGACATGACAATGGT-AAGTTC-ACAAGGCAAGGA
* * * *
76092071 TCCCATGTAAGACCATGCCAAGGCATGACAATGGTGAGTTCAGAAGGCAAGGA
1 TACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCACAAGGCAAGGA
* * *
76092124 TACCACGTAAGACCATGTCAAGACATGTCAATGGTAAGTT
1 TACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTT
76092164 TAAAGAGGAA
Statistics
Matches: 116, Mismatches: 30, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 44 0.38
54 32 0.28
55 40 0.34
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
TACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCACAAGGCAAGGA
Found at i:76092876 original size:31 final size:31
Alignment explanation
Indices: 76092841--76092904 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
76092831 CCTTTTCATA
*
76092841 TTTCATATTTCATAATACTGAGCCGAAGCCT
1 TTTCATATTCCATAATACTGAGCCGAAGCCT
* * *
76092872 TTTCATATTCCATATTACTGGGCTGAAGCCT
1 TTTCATATTCCATAATACTGAGCCGAAGCCT
76092903 TT
1 TT
76092905 CATTTAACGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTCCATAATACTGAGCCGAAGCCT
Found at i:76093198 original size:51 final size:50
Alignment explanation
Indices: 76093127--76093222 Score: 140
Period size: 51 Copynumber: 1.9 Consensus size: 50
76093117 CCTCTTTAAT
** *
76093127 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-ATGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGAGGCATA-GCCCTTTTCAATA
76093177 AACTGGGGCATAAGCCCTTTTCAATAAACTGAGGCATAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCAATAAACTGAGGCATAGCCCTTTT
76093223 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
50 10 0.24
51 30 0.73
52 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCAATAAACTGAGGCATAGCCCTTTTCAATA
Found at i:76093200 original size:26 final size:25
Alignment explanation
Indices: 76093127--76093222 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
76093117 CCTCTTTAAT
**
76093127 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAATA
*
76093152 AACTGGGGCAATGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATA
76093177 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCA-AAGCCCTTTTCAATA
* *
76093203 AACTGAGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76093223 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 41 0.64
26 23 0.36
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAATA
Found at i:76093297 original size:20 final size:20
Alignment explanation
Indices: 76093272--76093328 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
76093262 TTATGATTAC
*
76093272 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
76093291 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
76093312 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
76093329 CCATGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:76099936 original size:2 final size:2
Alignment explanation
Indices: 76099929--76099958 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
76099919 CATCAGCTAG
76099929 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76099959 AATAATAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76104022 original size:26 final size:25
Alignment explanation
Indices: 76103951--76104046 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
76103941 CCTCTTTAAT
**
76103951 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAATA
76103976 AACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATA
76104001 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCA-AAGCCCTTTTCAATA
*
76104027 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76104047 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
25 42 0.63
26 25 0.37
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAATA
Found at i:76104022 original size:51 final size:50
Alignment explanation
Indices: 76103951--76104046 Score: 156
Period size: 51 Copynumber: 1.9 Consensus size: 50
76103941 CCTCTTTAAT
**
76103951 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCAATA
*
76104001 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTT
76104047 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 10 0.24
51 32 0.76
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCAATA
Found at i:76104121 original size:20 final size:20
Alignment explanation
Indices: 76104096--76104170 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
76104086 TTATGATTAC
*
76104096 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
76104116 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
76104136 ATCATGTGTATATCATATCA-
1 ATCATGTGCATATCATA-CAT
76104156 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
76104171 TCCCATGTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 42 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:76104179 original size:16 final size:17
Alignment explanation
Indices: 76104142--76104180 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
76104132 ACATATCATG
*
76104142 TGTATATCATATCAATCA
1 TGTATATCATATC-ACCA
76104160 TGTATATCATATC-CCA
1 TGTATATCATATCACCA
76104176 TGTAT
1 TGTAT
76104181 CAAATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (17 bp):
TGTATATCATATCACCA
Found at i:76108613 original size:2 final size:2
Alignment explanation
Indices: 76108600--76108643 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
76108590 GCTCTTGCAC
*
76108600 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76108642 AT
1 AT
76108644 GTTTGCACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76109538 original size:40 final size:39
Alignment explanation
Indices: 76109353--76109574 Score: 270
Period size: 39 Copynumber: 5.6 Consensus size: 39
76109343 TCGAATGATG
* * * *
76109353 TCCGGGCTAAGTCCCAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
76109392 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
76109431 TTCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
76109470 TCCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
76109509 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
76109550 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
76109575 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
38 24 0.15
39 69 0.43
40 61 0.38
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76109596 original size:79 final size:78
Alignment explanation
Indices: 76109353--76109607 Score: 225
Period size: 79 Copynumber: 3.2 Consensus size: 78
76109343 TCGAATGATG
* * * * * *
76109353 TCCGGGCTAAGTCCCAAGGC-TTTGTGCTAAGTGACT-ATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCGAAGGCATTGGTGC-GAGTTACTAATA-CCGGGCTAAG-TCCGAAGGCATT
* **
76109416 CGTGCGAGTTACT-AA
63 GGAACGAGTTACTAAA
* * * *
76109431 TTCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTGGT
1 TCCGGGTTAAGTCCGAAGGCATTGGTGCGAGTTACTAATACCGGGCTAAGTCCGAAGGCATTGGA
*
76109496 GCGAGTTACTAAA
66 ACGAGTTACTAAA
* *
76109509 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAT-ACCGGGCTAAGT-CCGAAGGCATT
* *
76109573 TGAACGAG-TAGCTATA
63 GGAACGAGTTA-CTAAA
*
76109589 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTT-AAGTCCGAAGG
76109608 TACGTGATTC
Statistics
Matches: 151, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
77 24 0.16
78 47 0.31
79 54 0.36
80 26 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGTTAAGTCCGAAGGCATTGGTGCGAGTTACTAATACCGGGCTAAGTCCGAAGGCATTGGA
ACGAGTTACTAAA
Found at i:76116088 original size:2 final size:2
Alignment explanation
Indices: 76116075--76116106 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
76116065 GCTCTTGCAC
*
76116075 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76116107 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:76116915 original size:39 final size:40
Alignment explanation
Indices: 76116815--76117038 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
76116805 TCGAATGATG
* *
76116815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTCAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
76116854 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76116895 TTCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
76116934 TCCGGGCTAAGT-CCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
76116973 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76117012 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
76117039 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 75 0.46
40 78 0.48
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:76117004 original size:79 final size:79
Alignment explanation
Indices: 76116815--76117045 Score: 297
Period size: 79 Copynumber: 2.9 Consensus size: 79
76116805 TCGAATGATG
* * *
76116815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTCAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATT
* *
76116879 TGTGCGAGTTACTAAT
64 TGTACGAGTTACTAAA
* * *
76116895 TTCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTA-ATTCCGGGCTAAGTCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTT
76116958 GTACGAGTTACTAAA
65 GTACGAGTTACTAAA
* * *
76116973 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTT
*
76117038 GAACGAGT
65 GTACGAGT
76117046 AGCTATATCC
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
78 36 0.27
79 59 0.45
80 36 0.27
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTG
TACGAGTTACTAAA
Found at i:76117060 original size:79 final size:78
Alignment explanation
Indices: 76116822--76117071 Score: 274
Period size: 79 Copynumber: 3.2 Consensus size: 78
76116812 ATGTCCGGGC
* * * *
76116822 TAAGTCCCGAAGGC-TTTGTGCTCAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATTTGTACGA
* * *
76116886 GTTACTAATTTCGGGC
64 GTTACT-ATATCCGGT
* *
76116902 TAAGT-CCGAAGGCATTGGTGCGAGTTACTA-ATTCCGGGCTAAGTCCGAAGGCATTGGTACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTTGTACGAG
*
76116965 TTACTAAATCCGGGT
65 TTACTATATCC-GGT
* * *
76116980 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTGTACGAG
76117045 -TAGCTATATCCGGT
65 TTA-CTATATCCGGT
* *
76117059 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
76117072 TACGTGATTC
Statistics
Matches: 145, Mismatches: 18, Indels: 15
0.81 0.10 0.08
Matches are distributed among these distances:
77 3 0.02
78 31 0.21
79 75 0.52
80 36 0.25
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGTACGAGT
TACTATATCCGGT
Found at i:76127631 original size:38 final size:37
Alignment explanation
Indices: 76127598--76127718 Score: 163
Period size: 38 Copynumber: 3.2 Consensus size: 37
76127588 GCAGGCTATA
76127598 TGCTGG-AATTATATCCGGGTTAAATTCCGCAGGCTTCG
1 TGCTGGTAA-TATATCCGGGTTAAA-TCCGCAGGCTTCG
* * * *
76127636 CGCTGGTAATATATCTGGGTTAAATCTTGTAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATC-CGCAGGCTTCG
76127674 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCC-GCAGGCTTCG
76127712 TGCTGGT
1 TGCTGGT
76127719 GTCGAAACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
37 2 0.03
38 68 0.94
39 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.34
Consensus pattern (37 bp):
TGCTGGTAATATATCCGGGTTAAATCCGCAGGCTTCG
Found at i:76127858 original size:15 final size:15
Alignment explanation
Indices: 76127838--76127867 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
76127828 ATTCGACTAA
76127838 ACATTAATTTTGATC
1 ACATTAATTTTGATC
76127853 ACATTAATTTTGATC
1 ACATTAATTTTGATC
76127868 TTATTTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (15 bp):
ACATTAATTTTGATC
Found at i:76128621 original size:9 final size:8
Alignment explanation
Indices: 76128596--76128620 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
76128586 TTATATATAA
76128596 TCTTTTTT
1 TCTTTTTT
76128604 TCTTTTTT
1 TCTTTTTT
76128612 TCTTTTTT
1 TCTTTTTT
76128620 T
1 T
76128621 TGGAAATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TCTTTTTT
Found at i:76129667 original size:12 final size:12
Alignment explanation
Indices: 76129650--76129686 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
76129640 CTCTTCTCTC
76129650 TCTCTCTCTTTT
1 TCTCTCTCTTTT
76129662 TCTCTCTCTTTT
1 TCTCTCTCTTTT
*
76129674 TCTTTCTCTTTT
1 TCTCTCTCTTTT
76129686 T
1 T
76129687 AATAACTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (12 bp):
TCTCTCTCTTTT
Found at i:76129667 original size:14 final size:14
Alignment explanation
Indices: 76129646--76129686 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
76129636 GACCCTCTTC
76129646 TCTCTCTCTCTCTTT
1 TCTCTCTCTCT-TTT
76129661 T-TCTCTCTCTTTT
1 TCTCTCTCTCTTTT
76129674 TCT-T-TCTCTTTT
1 TCTCTCTCTCTTTT
76129686 T
1 T
76129687 AATAACTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 9 0.36
13 5 0.20
14 10 0.40
15 1 0.04
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
TCTCTCTCTCTTTT
Found at i:76133902 original size:22 final size:21
Alignment explanation
Indices: 76133867--76133979 Score: 71
Period size: 19 Copynumber: 5.7 Consensus size: 21
76133857 AAAAGGTATC
* *
76133867 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
76133888 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
76133911 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
76133930 TGC-AATCGTA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
76133948 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
76133967 TGC-AATCATATCT
1 TACAAATCATATCT
76133980 AAGATTGTAT
Statistics
Matches: 78, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
18 22 0.28
19 27 0.35
20 1 0.01
21 3 0.04
22 15 0.19
23 10 0.13
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:76133910 original size:23 final size:22
Alignment explanation
Indices: 76133867--76133924 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
76133857 AAAAGGTATC
* *
76133867 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
76133888 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
76133911 TGCATATCATATCT
1 TACAAATCATATCT
76133925 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:76133927 original size:19 final size:19
Alignment explanation
Indices: 76133903--76134011 Score: 181
Period size: 19 Copynumber: 5.9 Consensus size: 19
76133893 AATCATATCT
76133903 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
76133922 TCTAAGATTGCA-ATCGTA
1 TCTAAGATTGCATATCATA
76133940 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76133959 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
76133977 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
76133994 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
76134012 TGAAGATTGT
Statistics
Matches: 84, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
17 16 0.19
18 33 0.39
19 35 0.42
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76133951 original size:37 final size:37
Alignment explanation
Indices: 76133903--76134011 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
76133893 AATCATATCT
*
76133903 TCTAAGATTGCATATCATATCTAAGATTGCAATCGTA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
76133940 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
76133977 TCTAAGATTG--TATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
76134012 TGAAGATTGT
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 19 0.27
36 5 0.07
37 46 0.66
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
Found at i:76134009 original size:14 final size:15
Alignment explanation
Indices: 76133917--76134009 Score: 62
Period size: 18 Copynumber: 5.5 Consensus size: 15
76133907 AGATTGCATA
76133917 TCATATCTAAGATTG
1 TCATATCTAAGATTG
*
76133932 CAATCGTATCTAAGATTG
1 ---TCATATCTAAGATTG
76133950 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
76133969 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
76133987 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
76134004 -CATATC
1 TCATATC
76134010 ATTGAAGATT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
14 6 0.09
17 16 0.24
18 30 0.45
19 15 0.22
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:76134170 original size:23 final size:22
Alignment explanation
Indices: 76134128--76134171 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
76134118 ACTTGGACTT
**
76134128 TATTTTTTTTTTGGGTTTATTA
1 TATTTTTTTTTTGGACTTATTA
76134150 TATTTTTGTTTTTGGACTTATT
1 TATTTTT-TTTTTGGACTTATT
76134172 TTTGGGCCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.14, C:0.02, G:0.14, T:0.70
Consensus pattern (22 bp):
TATTTTTTTTTTGGACTTATTA
Found at i:76140339 original size:40 final size:40
Alignment explanation
Indices: 76140295--76140480 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
76140285 GCTACTCGTT
*
76140295 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCACA
* *
76140335 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACA
* *
76140375 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACA
* * * * *
76140415 CAAATGCCTTC-GAATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CA
76140456 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76140481 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 118 0.91
41 10 0.08
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACA
Found at i:76142649 original size:18 final size:18
Alignment explanation
Indices: 76142626--76142661 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76142616 CTTCTAGTTA
76142626 GCCACTCATGTGTAACTT
1 GCCACTCATGTGTAACTT
76142644 GCCACTCATGTGTAACTT
1 GCCACTCATGTGTAACTT
76142662 CCTTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (18 bp):
GCCACTCATGTGTAACTT
Found at i:76153726 original size:29 final size:30
Alignment explanation
Indices: 76153688--76153751 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
76153678 TCATGCTAGA
*
76153688 CAGCTGCTTTAATGCCGTTCTATGCACCAG
1 CAGCTGCTTTAATGCCGTTCCATGCACCAG
* *
76153718 CAGCT-CTTTAATGCTGTTCCATGTACCAG
1 CAGCTGCTTTAATGCCGTTCCATGCACCAG
76153747 CAGCT
1 CAGCT
76153752 TAATTAATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.20, C:0.30, G:0.19, T:0.31
Consensus pattern (30 bp):
CAGCTGCTTTAATGCCGTTCCATGCACCAG
Found at i:76155666 original size:33 final size:33
Alignment explanation
Indices: 76155629--76155694 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
76155619 GTCATCCCCT
76155629 TCACTTCCAAAAATCCTCCCTGGTGTCAATCGA
1 TCACTTCCAAAAATCCTCCCTGGTGTCAATCGA
*
76155662 TCACTTCCAAAAATCCTCCCTGGTGTCGATCGA
1 TCACTTCCAAAAATCCTCCCTGGTGTCAATCGA
76155695 AAATCGATCC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (33 bp):
TCACTTCCAAAAATCCTCCCTGGTGTCAATCGA
Found at i:76156655 original size:22 final size:22
Alignment explanation
Indices: 76156627--76156673 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
76156617 TAATTGAAAG
*
76156627 TATGCAAGGCACAGTCTGATAC
1 TATGCAAGGCACAATCTGATAC
76156649 TATGCAAGGCACAATCTGATAC
1 TATGCAAGGCACAATCTGATAC
76156671 TAT
1 TAT
76156674 TTACTGAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (22 bp):
TATGCAAGGCACAATCTGATAC
Found at i:76161299 original size:9 final size:9
Alignment explanation
Indices: 76161285--76161315 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
76161275 GAACTATTAT
*
76161285 TGATAAGCG
1 TGATAAGCA
76161294 TGATAAGCA
1 TGATAAGCA
76161303 TGATAAGCA
1 TGATAAGCA
76161312 TGAT
1 TGAT
76161316 CAGTAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.26
Consensus pattern (9 bp):
TGATAAGCA
Found at i:76162116 original size:21 final size:20
Alignment explanation
Indices: 76162074--76162121 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
76162064 AATTTAATTA
*
76162074 AAATATTTAAATTATATTTT
1 AAATATTTAAATTATATATT
76162094 AAATATTTAAA-TATAACTATT
1 AAATATTTAAATTAT-A-TATT
76162115 AAATATT
1 AAATATT
76162122 GGTAATTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 3 0.12
20 12 0.48
21 10 0.40
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
AAATATTTAAATTATATATT
Found at i:76162117 original size:33 final size:31
Alignment explanation
Indices: 76162043--76162118 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 31
76162033 TTTTTAAGCA
*
76162043 ATAAATATT-AATTATTTATAAAATTTAATT
1 ATAAATATTAAATTATTTATAAAATTTAAAT
*
76162073 A-AAATATTTAAATTATATTTTAAATATTTAAAT
1 ATAAATA-TTAAATTAT-TTATAAA-ATTTAAAT
*
76162106 ATAACTATTAAAT
1 ATAAATATTAAAT
76162119 ATTGGTAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
29 5 0.13
30 3 0.08
31 6 0.16
32 6 0.16
33 14 0.37
34 4 0.11
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (31 bp):
ATAAATATTAAATTATTTATAAAATTTAAAT
Found at i:76184118 original size:42 final size:45
Alignment explanation
Indices: 76184052--76184179 Score: 151
Period size: 43 Copynumber: 3.0 Consensus size: 45
76184042 CGAAATGTGA
* * *
76184052 TATTCGGGCTTCG-GCCTAGCAGGCTATAATGCCAGTGAAATGA-
1 TATTCGAGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * * *
76184095 TA-TCG-GGTTTGAGCTTAGTAGGCTATGATG-CGGTGAAAT-AT
1 TATTCGAGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
76184136 TATTCGAGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA
1 TATTCGAGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA
76184180 AATGTTATGT
Statistics
Matches: 69, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
40 1 0.01
41 14 0.20
42 21 0.30
43 23 0.33
44 9 0.13
45 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (45 bp):
TATTCGAGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:76184530 original size:37 final size:38
Alignment explanation
Indices: 76184475--76184681 Score: 303
Period size: 38 Copynumber: 5.5 Consensus size: 38
76184465 GTAGGCTATA
76184475 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
*
76184513 TG-TGGTAATATATCCGGGTTAAATCCCGCAGGCTTTG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* *
76184550 TGCTGGTAATATATCCGGGTTAAATCCCACAAGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
*
76184588 TGCTGGTAATATATCC-GGTTAATTCCCGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
76184625 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* *
76184663 TGCTGGTATTATATTCGGG
1 TGCTGGTAATATATCCGGG
76184682 CCTTTGAGCC
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
37 66 0.43
38 88 0.57
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:76184571 original size:75 final size:76
Alignment explanation
Indices: 76184448--76184681 Score: 303
Period size: 75 Copynumber: 3.1 Consensus size: 76
76184438 ATGATATTTG
* ** * * *
76184448 TATCCGGCTTAAAGACCGTAGGCTATATGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTC
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTC
76184512 GTG-TGGTAATA
65 GTGCTGGTAATA
* *
76184523 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCACAAGCTTCG
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
76184588 TGCTGGTAATA
66 TGCTGGTAATA
* * * * *
76184599 TATCC-GGTTAATTCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAG
1 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
*
76184663 TGCTGGTATTA
66 TGCTGGTAATA
*
76184674 TATTCGGG
1 TATCCGGG
76184682 CCTTTGAGCC
Statistics
Matches: 139, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
75 122 0.88
76 17 0.12
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (76 bp):
TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
TGCTGGTAATA
Found at i:76184736 original size:43 final size:43
Alignment explanation
Indices: 76184673--76184794 Score: 183
Period size: 43 Copynumber: 2.8 Consensus size: 43
76184663 TGCTGGTATT
*
76184673 ATATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGAC
1 ATATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
76184717 ATATTCGGGCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAC
76184760 ACTATTC-GGCTTTCGAGCCTAGCAGGCTATAATGC
1 A-TATTCGGGCTTT-GAGCCTAGCAGGCTATAATGC
76184795 GATGAAATGA
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
43 38 0.53
44 34 0.47
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (43 bp):
ATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:76192958 original size:38 final size:38
Alignment explanation
Indices: 76192907--76193220 Score: 484
Period size: 38 Copynumber: 8.3 Consensus size: 38
76192897 ATATTTGATA
*
76192907 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
76192945 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
76192983 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
76193021 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
76193059 TATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
76193097 TATATCCGGGTTAAATCCCGTAGGCTTCGTACTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
76193135 TATATCCGGGGTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * * *
76193173 TATATCTGAGTTAAATCCCGCAGGCCTAGTGCTAGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
76193211 TATATTCGGG
1 TATATCCGGG
76193221 CCTTTGAGCC
Statistics
Matches: 249, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 249 1.00
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:76194688 original size:43 final size:46
Alignment explanation
Indices: 76194619--76194750 Score: 168
Period size: 43 Copynumber: 3.0 Consensus size: 46
76194609 GGAAATGTGA
76194619 TATTCGA-GCTTCTG-GCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGAGGCTT-TGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
76194663 TA-TCG-GGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAAT-AT
1 TATTCGAGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* *
76194706 TATTCGAGGTTTTGAGCCTAGCAGGCTATAATGCCGGTTAAATGA
1 TATTCGAGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA
76194751 AATGTTATGT
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
42 3 0.04
43 34 0.46
44 5 0.07
45 31 0.42
46 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (46 bp):
TATTCGAGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:76194733 original size:45 final size:45
Alignment explanation
Indices: 76194616--76194750 Score: 170
Period size: 45 Copynumber: 3.1 Consensus size: 45
76194606 TATGGAAATG
* *
76194616 TGATATTCGAGCTTCTG-GCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGAGGTTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
76194660 TGATA-TCG-GGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGAGGTTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
76194703 T-ATTATTCGAGGTTTTGAGCCTAGCAGGCTATAATGCCGGTTAAA
1 TGA-TATTCGAGGTTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
76194748 TGA
1 TGA
76194751 AATGTTATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
42 5 0.07
43 30 0.40
44 8 0.11
45 31 0.41
46 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (45 bp):
TGATATTCGAGGTTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:76195081 original size:38 final size:38
Alignment explanation
Indices: 76195047--76195217 Score: 209
Period size: 38 Copynumber: 4.5 Consensus size: 38
76195037 GTAGGCTATA
*
76195047 TGCTGG-AATTATATCTGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
76195085 TGCTGGTAACATATCTGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* *
76195123 TGTTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* * * *
76195161 TGATGGTATTATATCCGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
76195199 TGATGGTATTATATTCGGG
1 TGCTGGTAATATATCCGGG
76195218 CCTTTGAGCC
Statistics
Matches: 119, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
38 117 0.98
39 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (38 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:76195332 original size:45 final size:45
Alignment explanation
Indices: 76195210--76195334 Score: 198
Period size: 45 Copynumber: 2.8 Consensus size: 45
76195200 GATGGTATTA
* *
76195210 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATACCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
76195255 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
76195300 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCC
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCC
76195335 AATGAAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
44 4 0.05
45 70 0.95
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:76195352 original size:45 final size:44
Alignment explanation
Indices: 76195213--76195369 Score: 127
Period size: 45 Copynumber: 3.5 Consensus size: 44
76195203 GGTATTATAT
* * * ** * * *
76195213 TCGGGCCTTTGAGCCTAGCAGGCTATTATACCGGTGAGACACTAT
1 TCGGGCC-TCGAGCCTAGCAGGCTATAATGCCAATGAAATACTAA
* * ** * *
76195258 TCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATACTAT
1 TCGGGCC-TCGAGCCTAGCAGGCTATAATGCCAATGAAATACTAA
*
76195303 TCGGGCTTTCGAGCCTAGCAGGCTATAATGCCAATGAAATGA-TAA
1 TCGGGC-CTCGAGCCTAGCAGGCTATAATGCCAATGAAAT-ACTAA
*
76195348 TCGGGCCTCGATCCTAGCAGGC
1 TCGGGCCTCGAGCCTAGCAGGC
76195370 AAAATGTCAG
Statistics
Matches: 97, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
44 14 0.14
45 82 0.85
46 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (44 bp):
TCGGGCCTCGAGCCTAGCAGGCTATAATGCCAATGAAATACTAA
Found at i:76203911 original size:2 final size:2
Alignment explanation
Indices: 76203899--76203942 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
76203889 TATACATGCC
*
76203899 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76203941 AT
1 AT
76203943 CCAAGTTCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:76204316 original size:20 final size:20
Alignment explanation
Indices: 76204288--76204341 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
76204278 AATTCATCCT
* * *
76204288 CATTCATATAATCGGGAATC
1 CATTTATATAACCAGGAATC
*
76204308 CATTTATATAACCAGTAATC
1 CATTTATATAACCAGGAATC
*
76204328 CATCTATATAACCA
1 CATTTATATAACCA
76204342 TTAACAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.31
Consensus pattern (20 bp):
CATTTATATAACCAGGAATC
Found at i:76204541 original size:24 final size:23
Alignment explanation
Indices: 76204486--76204542 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
76204476 CTGAGTTGAT
76204486 GAATAGTAAGCTCTATCGAGCTG
1 GAATAGTAAGCTCTATCGAGCTG
* *
76204509 GAAACAGTAATCTCTGA-CGAGCTG
1 G-AATAGTAAGCTCT-ATCGAGCTG
76204533 AGAATAGTAA
1 -GAATAGTAA
76204543 ACCCTTACGA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 1 0.04
24 25 0.89
25 2 0.07
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (23 bp):
GAATAGTAAGCTCTATCGAGCTG
Found at i:76207830 original size:40 final size:40
Alignment explanation
Indices: 76207639--76207817 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
76207629 TGGATGATAA
* * *
76207639 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-TAT
76207679 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* * *
76207719 CCGGGCTAAGTCCCTAAGGCATTTGTGCAAGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
76207759 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
76207799 CCGGGCTATGTCCTGAAGG
1 CCGGGCTAAGTCCCGAAGG
76207818 TATTCGAGCG
Statistics
Matches: 126, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 125 0.99
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:76207837 original size:40 final size:40
Alignment explanation
Indices: 76207639--76207839 Score: 208
Period size: 40 Copynumber: 5.0 Consensus size: 40
76207629 TGGATGATAA
* * * *
76207639 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTA-TAT
* * *
76207679 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATAT
* * * * * *
76207719 CCGGGCTAAGTCCCTAAGGCATTTGTGCAAGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATAT
* *
76207759 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATAT
* * *
76207799 CCGGGCTATGTCCTGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTA-CTATAT
76207839 C
1 C
76207840 TGGTTCAATC
Statistics
Matches: 144, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
39 3 0.02
40 141 0.98
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATAT
Found at i:76207838 original size:80 final size:80
Alignment explanation
Indices: 76207639--76207839 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 80
76207629 TGGATGATAA
* * * *
76207639 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCTAAGGCATTCGAGCAAGAT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
76207702 TGTGCAAGTTACTATAT
64 TGTGCAAGTTACTATAT
* * *
76207719 CCGGGCTAAGTCCCTAAGGCATTTGTGCAAGATATTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCTAAGGCATTCGAGCAAGATACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
76207784 TGCGAGTTACTATAT
66 TGCAAGTTACTATAT
* * *
76207799 CCGGGCTATGT-CCTGAAGGTATTCGAGCGAG-TAGCTATATC
1 CCGGGCTAAGTCCCT-AAGGCATTCGAGCAAGATA-CTATATC
76207840 TGGTTCAATC
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
79 6 0.06
80 99 0.93
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCTAAGGCATTCGAGCAAGATACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGTTACTATAT
Found at i:76216453 original size:40 final size:38
Alignment explanation
Indices: 76216347--76216496 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
76216337 ATCACGATTT
*
76216347 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAATGACTA
**
76216386 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAATG--ACTA
* * ** *
76216426 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA-AATGACTA
* * *
76216466 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
76216497 TCATTCAATT
Statistics
Matches: 90, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.36
40 56 0.62
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAAATGACTA
Found at i:76221929 original size:13 final size:13
Alignment explanation
Indices: 76221907--76221939 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76221897 AAGGATTTGT
76221907 TTAT-TAAACTAA
1 TTATCTAAACTAA
76221919 TTATCTAAACTAA
1 TTATCTAAACTAA
*
76221932 TTAACTAA
1 TTATCTAA
76221940 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:76224088 original size:10 final size:10
Alignment explanation
Indices: 76224051--76224095 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
76224041 ATATTTTAAA
76224051 ACATATCAATC
1 ACATAT-AATC
*
76224062 ACATATAAGC
1 ACATATAATC
* *
76224072 ACGTATAATT
1 ACATATAATC
76224082 ACATATAATC
1 ACATATAATC
76224092 ACAT
1 ACAT
76224096 TTAGTCACAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
10 22 0.79
11 6 0.21
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.29
Consensus pattern (10 bp):
ACATATAATC
Found at i:76230399 original size:40 final size:40
Alignment explanation
Indices: 76230354--76230521 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
76230344 CGGAATATAA
*
76230354 CCGGATATAATCACGT-GGACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
76230394 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
76230434 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
76230474 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
76230514 CCGGATAT
1 CCGGATAT
76230522 CATTCAATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 2 0.02
40 100 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76230504 original size:80 final size:80
Alignment explanation
Indices: 76230372--76230519 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
76230362 AATCACGTGG
*
76230372 ACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGCCC
1 ACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGCCC
76230436 GGATGTAGCCACTAGC
65 GGATGTAGCCACTAGC
* * * * *
76230452 ACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAGCC
1 ACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAGCC
76230515 CGGAT
64 CGGAT
76230520 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 55 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
ACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCCCG
GATGTAGCCACTAGC
Found at i:76238032 original size:39 final size:40
Alignment explanation
Indices: 76237989--76238115 Score: 136
Period size: 40 Copynumber: 3.2 Consensus size: 40
76237979 CGGAATATAA
76237989 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAG-
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
76238028 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** *
76238068 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
76238108 CCGGATAT
1 CCGGATAT
76238116 CATTCAATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.03
39 33 0.45
40 36 0.49
41 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76240050 original size:40 final size:40
Alignment explanation
Indices: 76240005--76240172 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
76239995 CGGAATATAA
76240005 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
76240045 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
76240085 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
76240125 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76240165 CCGGATAT
1 CCGGATAT
76240173 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76248039 original size:40 final size:40
Alignment explanation
Indices: 76247994--76248160 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
76247984 CGGAATATAA
76247994 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
76248034 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
76248074 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
76248114 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76248153 CCGGATAT
1 CCGGATAT
76248161 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76252193 original size:40 final size:41
Alignment explanation
Indices: 76252107--76252252 Score: 206
Period size: 40 Copynumber: 3.6 Consensus size: 41
76252097 CGCTGACTCA
* *
76252107 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * *
76252148 GAAAGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
76252188 AAAAGCCCTTCG-GACCAAGCTCGGATTATAACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
76252228 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
76252253 TTTTAAACCC
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 8 0.09
40 50 0.56
41 32 0.36
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:76254860 original size:27 final size:28
Alignment explanation
Indices: 76254830--76254929 Score: 98
Period size: 27 Copynumber: 3.7 Consensus size: 28
76254820 TTTAGTTTAC
76254830 TAAAATTACCAAAATACCCTTAG-TTTG
1 TAAAATTACCAAAATACCCTTAGATTTG
* ** *
76254857 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCAAAATACCCTTAGATTTG
** * *
76254884 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCAAAATACCCTTAGATTTG
*
76254911 TAAAATTACCAAAGTACCC
1 TAAAATTACCAAAATACCC
76254930 CCGATTTACA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.07
27 55 0.90
28 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (28 bp):
TAAAATTACCAAAATACCCTTAGATTTG
Found at i:76254944 original size:27 final size:27
Alignment explanation
Indices: 76254925--76255182 Score: 246
Period size: 27 Copynumber: 9.6 Consensus size: 27
76254915 ATTACCAAAG
*
76254925 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
76254952 TACCCCCGATTTACATAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
76254979 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
76255006 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * * *
76255033 TACCCTCAATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* ** *
76255060 CACCCTTGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * *
76255087 TACCTTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
76255114 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
** **
76255141 TACCCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
**
76255168 TACCCTTGATTTACA
1 TACCCCCGATTTACA
76255183 AAGTTATAGA
Statistics
Matches: 198, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 198 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:76254962 original size:81 final size:81
Alignment explanation
Indices: 76254871--76255054 Score: 199
Period size: 81 Copynumber: 2.3 Consensus size: 81
76254861 AATACTGAAA
* * **
76254871 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTATAAAATTACTGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
76254936 TACAGAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* * * *** * **** *
76254952 TACCCCCGATTTACATAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
76255017 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
*
76255033 TACCCTCAATTTATAAAATTAC
1 TACCCTCGATTTATAAAATTAC
76255055 CGTTTCACCC
Statistics
Matches: 82, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
81 81 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACTGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
TACAGAATTACTGTTT
Found at i:76255065 original size:81 final size:81
Alignment explanation
Indices: 76254925--76255182 Score: 347
Period size: 81 Copynumber: 3.2 Consensus size: 81
76254915 ATTACCAAAG
* * * * *
76254925 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACTGTTTTACCCTTGATT
* *
76254990 TACAAAATTACCGTTT
66 TACAGAATTACTGTTT
* * *
76255006 TACCCTCGATTTACAGAATTA-CTGTTTTACCCTCAATTTATAAAATTACCGTTTCACCCTTGAT
1 TACCCTCGATTTACAGAATTATC-GTTTTACCCTCGATTTATAAAATTACTGTTTTACCCTTGAT
76255070 TTACAGAATTACTGTTT
65 TTACAGAATTACTGTTT
* * * * *
76255087 TACCTTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACTGTTTTACCCTTGATT
*
76255152 TACAGAATTACTATTT
66 TACAGAATTACTGTTT
*
76255168 TACCCTTGATTTACA
1 TACCCTCGATTTACA
76255183 AAGTTATAGA
Statistics
Matches: 154, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 152 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACTGTTTTACCCTTGATT
TACAGAATTACTGTTT
Found at i:76255136 original size:54 final size:54
Alignment explanation
Indices: 76254925--76255182 Score: 345
Period size: 54 Copynumber: 4.8 Consensus size: 54
76254915 ATTACCAAAG
* * * * *
76254925 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
76254979 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
76255033 TACCCTCAATTTATAAAATTACCGTTTCACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * *
76255087 TACCTTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * ** *
76255141 TACCCTTGATTTACAGAATTACTATTTTACCCTTGATTTACA
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACA
76255183 AAGTTATAGA
Statistics
Matches: 177, Mismatches: 27, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 177 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:76255262 original size:27 final size:27
Alignment explanation
Indices: 76255141--76255258 Score: 107
Period size: 27 Copynumber: 4.3 Consensus size: 27
76255131 ATTACTATTT
* ***
76255141 TACCCTTGATTTACAGAATTACTA-TTT
1 TACCCTTGATTTACAAAATTA-TAGAAA
*
76255168 TACCCTTGATTTACAAAGTTATAGAAA
1 TACCCTTGATTTACAAAATTATAGAAA
76255195 TACCCTTGACTTT-CTAAAAATTATAGAAA
1 TACCCTTGA-TTTAC--AAAATTATAGAAA
* *
76255224 TACCATTGGTTTACAAAATTACT-GAAA
1 TACCCTTGATTTACAAAATTA-TAGAAA
76255251 TACCCTTG
1 TACCCTTG
76255259 GTTTGTAGAT
Statistics
Matches: 76, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
26 2 0.03
27 47 0.62
28 7 0.09
29 20 0.26
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTATAGAAA
Found at i:76255737 original size:40 final size:41
Alignment explanation
Indices: 76255677--76255753 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
76255667 GTTAGTGGAT
* * *
76255677 TATGTAGAAAGAATAAAG-AAATGAAAAAAAAAGAAAGAGAA
1 TATGAAGAAAGAACAAAGAAAAGGAAAAAAAAA-AAAGAGAA
76255718 TATGAAGAAA-AACAAAGAAAAGGAAAAAAAAAAAAG
1 TATGAAGAAAGAACAAAGAAAAGGAAAAAAAAAAAAG
76255754 TGTTCATTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
40 10 0.31
41 22 0.69
ACGTcount: A:0.71, C:0.01, G:0.18, T:0.09
Consensus pattern (41 bp):
TATGAAGAAAGAACAAAGAAAAGGAAAAAAAAAAAAGAGAA
Found at i:76256943 original size:29 final size:29
Alignment explanation
Indices: 76256910--76256974 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
76256900 GTGACGAGAT
*
76256910 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
76256939 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
76256968 CGGCACT
1 TGGCACT
76256975 GGGTGTGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:76266024 original size:24 final size:24
Alignment explanation
Indices: 76265984--76266045 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
76265974 GATTATGTAG
76265984 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
76266008 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
76266033 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
76266046 AAAAAAAGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Found at i:76267243 original size:29 final size:29
Alignment explanation
Indices: 76267210--76267274 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
76267200 GTGACGAGAT
*
76267210 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
76267239 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
76267268 CGGCACT
1 TGGCACT
76267275 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:76268772 original size:27 final size:27
Alignment explanation
Indices: 76268734--76268799 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
76268724 GGGGTGTTAC
76268734 AGGTAAAGTGACCGTAA-AGCCCCTGTA
1 AGGTAAAGTGACCGTAATA-CCCCTGTA
76268761 AGGTAAAGTGACCGTAATACCCCTGTA
1 AGGTAAAGTGACCGTAATACCCCTGTA
* *
76268788 TGGTAAAATGAC
1 AGGTAAAGTGAC
76268800 GAATATGCCC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 35 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (27 bp):
AGGTAAAGTGACCGTAATACCCCTGTA
Found at i:76269987 original size:25 final size:25
Alignment explanation
Indices: 76269959--76270006 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76269949 TTATACCATG
* * *
76269959 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76269984 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76270007 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:76270109 original size:20 final size:20
Alignment explanation
Indices: 76270049--76270109 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
76270039 ATAAATATGG
*
76270049 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
76270069 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
76270089 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
76270109 T
1 T
76270110 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:76270186 original size:24 final size:24
Alignment explanation
Indices: 76270159--76270301 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
76270149 GAGGAAGTGA
76270159 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
76270183 AAAAGGGCTTATACCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
76270207 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
76270230 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
76270254 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
76270278 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76270302 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 23 0.21
24 75 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:76270252 original size:47 final size:47
Alignment explanation
Indices: 76270159--76270301 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
76270149 GAGGAAGTGA
*
76270159 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
76270207 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
76270254 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
76270302 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 42 0.48
48 34 0.39
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:76270275 original size:71 final size:72
Alignment explanation
Indices: 76270159--76270302 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
76270149 GAGGAAGTGA
*
76270159 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATCAAAAGAGGC-TAGGCCT
76270222 CCAGTTAT
65 CCAGTTAT
** * * *
76270230 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATCAAAAGAGGCTAGGCCTC
76270295 CAGTTAT
66 CAGTTAT
76270302 A
1 A
76270303 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 53 0.82
72 12 0.18
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATACCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:76270530 original size:31 final size:31
Alignment explanation
Indices: 76270492--76270555 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76270482 CGTTTACAAT
76270492 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
76270523 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
76270554 AA
1 AA
76270556 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:76277284 original size:40 final size:41
Alignment explanation
Indices: 76277195--76277341 Score: 197
Period size: 41 Copynumber: 3.6 Consensus size: 41
76277185 CGCTGACTCA
* * *
76277195 AAAAGCCCTTCGAGACCAAGCTCGGATTATGGCATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
76277236 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
76277276 AAAAGCCCTTCGGGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
76277317 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
76277342 TTTTAAACCC
Statistics
Matches: 88, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 30 0.34
41 58 0.66
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.20
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:76277342 original size:81 final size:81
Alignment explanation
Indices: 76277195--76277343 Score: 208
Period size: 81 Copynumber: 1.8 Consensus size: 81
76277185 CGCTGACTCA
* * * * * * *
76277195 AAAAGCCCTTCGAGACCAAGCTCGGATTATGGCATTGGCCCGAAGGCCCTTCGAAACTAGGTTCG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCG
76277260 GTTATGACACTGGCTC
66 GTTATGACACTGGCTC
* * *
76277276 AAAAGCCCTTCGGGACCAAGCTCGGATTATGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCG
76277341 GTT
66 GTT
76277344 TTAAACCCCG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 58 1.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCG
GTTATGACACTGGCTC
Found at i:76279245 original size:29 final size:28
Alignment explanation
Indices: 76279182--76279265 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
76279172 ACCTATATAT
* *
76279182 ATATGGCCCATTAGGCCC-ATTCACATTT
1 ATATGGCCC-TTAGGCCCAAATCACATTC
*
76279210 ATGTGGCCCGTTAGGCCCAAATCACATTC
1 ATATGGCCC-TTAGGCCCAAATCACATTC
*
76279239 ATATGGCAAC-TAGGCCCAAATCACATT
1 ATATGGC-CCTTAGGCCCAAATCACATT
76279266 TACAGTCATG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 33 0.69
29 14 0.29
30 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (28 bp):
ATATGGCCCTTAGGCCCAAATCACATTC
Found at i:76285673 original size:46 final size:46
Alignment explanation
Indices: 76285606--76285782 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
76285596 TGTAACCCGC
*
76285606 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
76285652 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
76285698 ACATCTCTCGAACTCGGACTCAAC-CAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* *
76285744 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
76285783 CCCAAATATC
Statistics
Matches: 106, Mismatches: 21, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
45 16 0.15
46 73 0.69
47 17 0.16
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:76285744 original size:92 final size:93
Alignment explanation
Indices: 76285614--76285784 Score: 281
Period size: 92 Copynumber: 1.8 Consensus size: 93
76285604 GCCCATAAGT
*** *
76285614 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
76285679 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
76285707 GAACTCGGACTCAAC-CAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
76285771 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
76285785 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 57 0.79
93 15 0.21
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:76288364 original size:88 final size:85
Alignment explanation
Indices: 76287989--76288759 Score: 579
Period size: 89 Copynumber: 8.9 Consensus size: 85
76287979 GATTAAATCC
* * * * *
76287989 GAAACAAAATTATATCAAAATAAAATCTATTAAACGACAGGAATAAATCGC-GAAACAGA-ATTA
1 GAAACAAAATAAAATC-AAATAAAATCTGTTAAACGACGGGAATAAATC-CTGAAACAGATTTTA
*
76288052 TTTGA--TTACATTCT--TGTTTG
64 TTTAATTTTA-ATTCTCAT-TTTG
* * * * *
76288072 GAAACAAAACAATATCAAAAAAAATCTGGTTAAACAACAGGAATAAAT-CTCGAAACAGATTTTA
1 GAAACAAAATAAAATCAAATAAAATCT-GTTAAACGACGGGAATAAATCCT-GAAACAGATTTTA
* *
76288136 TTTAA-TTTAATTCT-AATTTA
64 TTTAATTTTAATTCTCATTTTG
* * *
76288156 GAAACAAAATAAAATCAAATAAAATAAAATCTTGTTAAACGGCGGGAATATATCTTGAAACAGAT
1 GAAACAAAATAAAATC-----AAATAAAATC-TGTTAAACGACGGGAATAAATCCTGAAACAGAT
*
76288221 TTTATTTAA-TTTAATTCT-AATTTG
60 TTTATTTAATTTTAATTCTCATTTTG
* *
76288245 GAAACAAAATAAAATTAAATAAAATCTTGTTAAACGACGGGAATAAATCCTGGAACAGATTTTAT
1 GAAACAAAATAAAATCAAATAAAATC-TGTTAAACGACGGGAATAAATCCTGAAACAGATTTTAT
76288310 TTAATTTTAATTTCTCATTATTG
65 TTAATTTTAA-TTCTCATT-TTG
* *
76288333 GAAACAAAATAAAATCAAATAAAATCTTGTTAAAC-AGTGGGAATAAATCCCGAAACAGATTTTA
1 GAAACAAAATAAAATCAAATAAAATC-TGTTAAACGA-CGGGAATAAATCCTGAAACAGATTTTA
*
76288397 TTTAATTTTAATTTCTCTTTTTTG
64 TTTAATTTTAA-TTCTC-ATTTTG
* * *
76288421 GAAACAAAATCAAAAT-ATAAT-AAATCTGTTGAACAGA-GGGAATAAATCCAGAAATAGATTTT
1 GAAACAAAAT-AAAATCA-AATAAAATCTGTTAAAC-GACGGGAATAAATCCTGAAACAGATTTT
* *
76288483 ATTTTAATTTTAATACTCGTTTTTG
63 A-TTTAATTTTAATTCTC-ATTTTG
* ** * * * * * * * *
76288508 GAAATAAAATCAAAATTGGAATAAAGTCCGTTGAACAACAGAAATAAGTCCCGAAACAGATTTTA
1 GAAACAAAAT-AAAA-TCAAATAAAATCTGTTAAACGACGGGAATAAATCCTGAAACAGATTTTA
* *
76288573 TTTTTATTTTAATACTCATTTTTG
64 -TTTAATTTTAATTCTCA-TTTTG
* * ** * * * *
76288597 AAAATAAAATTAAAATTGGAATAAAATCTATTGAACGGCGGGAATAAATCCTAAAACAGATTTTA
1 GAAACAAAA-TAAAA-TCAAATAAAATCTGTTAAACGACGGGAATAAATCCTGAAACAGATTTTA
* *
76288662 TTTAACTTTAATTTCCCA-TTTG
64 TTTAATTTTAA-TTCTCATTTTG
* ** * * ** **
76288684 GAAATAATAA-AAAATGGAATAAAATCCGTTGAACGGA-GGGAATAAATCCCAAAATGGATTTTA
1 GAAACAA-AATAAAATCAAATAAAATCTGTTAAAC-GACGGGAATAAATCCTGAAACAGATTTTA
*
76288747 TTTACTTTTAATT
64 TTTAATTTTAATT
76288760 TGGAAAAAAA
Statistics
Matches: 585, Mismatches: 70, Indels: 65
0.81 0.10 0.09
Matches are distributed among these distances:
81 1 0.00
82 10 0.02
83 40 0.07
84 80 0.14
85 58 0.10
86 9 0.02
87 68 0.12
88 124 0.21
89 192 0.33
90 3 0.01
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (85 bp):
GAAACAAAATAAAATCAAATAAAATCTGTTAAACGACGGGAATAAATCCTGAAACAGATTTTATT
TAATTTTAATTCTCATTTTG
Found at i:76288562 original size:176 final size:170
Alignment explanation
Indices: 76288212--76288759 Score: 509
Period size: 176 Copynumber: 3.2 Consensus size: 170
76288202 AATATATCTT
** *
76288212 GAAACAGATTTTATTTAA-TTTAA-T-TCTAATTTGGAAACAAAATAAAATTAAATAAAATCTTG
1 GAAACAGATTTTATTTAATTTTAATTCTCTTTTTTGGAAACAAAATAAAATTGAATAAAATC-TG
* * * * *
76288274 TTAAACGACGGGAATAAATCCTGGAACAGATTTTATTTAATTTTAATTTCTCATTATTGGAAACA
65 TTGAACGA-GGGAATAAATCCAGAAACAGATTTTATTTAATTTTAA--TCTCATTTTTGGAAATA
** * * *** *
76288339 AAATAAAATCAAATAAAATCTTGTTAAACAGTGGGAATAAATCCC
127 AAATAAAATGGAATAAAATC-CGTTGAACAACAGAAATAAATCCC
76288384 GAAACAGATTTTATTTAATTTTAATTTCTCTTTTTTGGAAACAAAATCAAAATAT-AAT-AAATC
1 GAAACAGATTTTATTTAATTTTAA-TTCTCTTTTTTGGAAACAAAAT-AAAAT-TGAATAAAATC
* *
76288447 TGTTGAACAGAGGGAATAAATCCAGAAATAGATTTTATTTTAATTTTAATACTCGTTTTTGGAAA
63 TGTTGAAC-GAGGGAATAAATCCAGAAACAGATTTTA-TTTAATTTTAAT-CTCATTTTTGGAAA
* *
76288512 TAAAATCAAAATTGGAATAAAGTCCGTTGAACAACAGAAATAAGTCCC
125 TAAAAT-AAAA-TGGAATAAAATCCGTTGAACAACAGAAATAAATCCC
* * * * *
76288560 GAAACAGATTTTATTTTTATTTTAATACTCATTTTTGAAAATAAAATTAAAATTGGAATAAAATC
1 GAAACAGATTTTA-TTTAATTTTAATTCTCTTTTTTGGAAACAAAA-TAAAATT-GAATAAAATC
* * * * ***
76288625 TATTGAACGGCGGGAATAAATCCTA-AAACAGATTTTATTTAACTTTAATTTCCCATTTGGAAAT
63 TGTTGAAC-GAGGGAATAAATCC-AGAAACAGATTTTATTTAATTTTAATCTCATTTTTGGAAAT
* * *
76288689 AATAA-AAAATGGAATAAAATCCGTTGAACGGA-GGGAATAAATCCC
126 AA-AATAAAATGGAATAAAATCCGTTGAAC-AACAGAAATAAATCCC
* ** *
76288734 AAAATGGATTTTATTTACTTTTAATT
1 GAAACAGATTTTATTTAATTTTAATT
76288760 TGGAAAAAAA
Statistics
Matches: 313, Mismatches: 44, Indels: 37
0.79 0.11 0.09
Matches are distributed among these distances:
172 18 0.06
173 15 0.05
174 40 0.13
175 54 0.17
176 104 0.33
177 44 0.14
178 37 0.12
179 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (170 bp):
GAAACAGATTTTATTTAATTTTAATTCTCTTTTTTGGAAACAAAATAAAATTGAATAAAATCTGT
TGAACGAGGGAATAAATCCAGAAACAGATTTTATTTAATTTTAATCTCATTTTTGGAAATAAAAT
AAAATGGAATAAAATCCGTTGAACAACAGAAATAAATCCC
Found at i:76293459 original size:33 final size:33
Alignment explanation
Indices: 76293422--76293487 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
76293412 TGTAGGTTGG
76293422 AGATAGTTACAGAAGTTCTTCGTTGAGCCCAGT
1 AGATAGTTACAGAAGTTCTTCGTTGAGCCCAGT
76293455 AGATAGTTACAGAAGTTCTTCGTTGAGCCCAGT
1 AGATAGTTACAGAAGTTCTTCGTTGAGCCCAGT
76293488 CACATCACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (33 bp):
AGATAGTTACAGAAGTTCTTCGTTGAGCCCAGT
Found at i:76294154 original size:15 final size:15
Alignment explanation
Indices: 76294121--76294167 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 15
76294111 AAAAAGAAAA
76294121 AGAAGAAGAAGAAGG
1 AGAAGAAGAAGAAGG
*
76294136 -GAAGTAG--GAA-G
1 AGAAGAAGAAGAAGG
76294147 AGAAGAAGAAGAAGG
1 AGAAGAAGAAGAAGG
76294162 AGAAGA
1 AGAAGA
76294168 GGGAAAATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
11 1 0.04
12 9 0.35
14 9 0.35
15 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.40, T:0.02
Consensus pattern (15 bp):
AGAAGAAGAAGAAGG
Found at i:76295572 original size:18 final size:18
Alignment explanation
Indices: 76295549--76295589 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
76295539 TACTTTTCTC
76295549 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
76295567 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
76295585 TTTCT
1 TTTCT
76295590 TTTTTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:76295742 original size:39 final size:38
Alignment explanation
Indices: 76295699--76295833 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 38
76295689 ACCAATATGG
*
76295699 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGAT-ATCCGAAGTAATAGTTGA
* * * *
76295738 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATATCCGAAGTAATAGTTGA
* * * *
76295776 TACCCAGTACCTCATCGAATCTATCCGAAGAAATTTAG-TGA
1 CACCCAGTGCCTCATCGGA--TATCCGAAGTAA--TAGTTGA
*
76295817 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
76295834 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
38 19 0.26
39 36 0.49
40 1 0.01
41 16 0.22
42 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGATATCCGAAGTAATAGTTGA
Found at i:76296848 original size:25 final size:25
Alignment explanation
Indices: 76296793--76296838 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76296783 ACTTTCTTTC
76296793 TTTC-TTT-TTTTACTTCTTTTACG
1 TTTCATTTGTTTTACTTCTTTTACG
*
76296816 TTTCATTTGTTTTATTTCTTTTA
1 TTTCATTTGTTTTACTTCTTTTA
76296839 TGTTATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 3 0.15
25 13 0.65
ACGTcount: A:0.11, C:0.13, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTCATTTGTTTTACTTCTTTTACG
Found at i:76298377 original size:42 final size:43
Alignment explanation
Indices: 76298258--76298395 Score: 224
Period size: 43 Copynumber: 3.2 Consensus size: 43
76298248 AAAAAAAAAC
*
76298258 TCATTGCATGCATATTAAAAAATAGTGAACAACTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
*
76298301 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
* *
76298344 TCATTGCATACATATTAAAAAA-AGTCAATAACTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
*
76298386 TCACTGCATG
1 TCATTGCATG
76298396 TGATCAGCAA
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 26 0.30
43 62 0.70
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (43 bp):
TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
Found at i:76300053 original size:15 final size:15
Alignment explanation
Indices: 76300028--76300076 Score: 71
Period size: 15 Copynumber: 3.2 Consensus size: 15
76300018 TCAGATGCAT
76300028 CACTATCACTACCAGA
1 CACT-TCACTACCAGA
76300044 CACTTCACTACCAGA
1 CACTTCACTACCAGA
* *
76300059 TACATCACTACCAGA
1 CACTTCACTACCAGA
76300074 CAC
1 CAC
76300077 GTTTTCTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
15 26 0.87
16 4 0.13
ACGTcount: A:0.37, C:0.39, G:0.06, T:0.18
Consensus pattern (15 bp):
CACTTCACTACCAGA
Found at i:76300432 original size:62 final size:63
Alignment explanation
Indices: 76300361--76300762 Score: 432
Period size: 64 Copynumber: 6.2 Consensus size: 63
76300351 TAGGAGCTTG
* * * * **
76300361 GATACAAACAATGACAGATATACACAATAAACATCAGTTTAATAATGTA-TAATTTAATGGAA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGAA
* * * * ** *
76300423 GATACAAACAATGGTAGATATACACAATAAACATCAGTTTAATAATGTA-TAATTTAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGAA
* *
76300485 GATACAAACAATGGCAGATATACACAATAAACATCAATTTGATAATGACACTCATACAATGGCAG
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATG-CATTCATACAATGG-A-
76300550 A
63 A
* * * *
76300551 TATACACAATAAACATCCATGGCAGATACAAACAATAAACATCAATTTGATAATGACATTCATAC
1 GAT--AC---AAACA---ATGGCAGATATACACAATAAACATCAGTTTGATAATG-CATTCATAC
*
76300616 AATGGCA
57 AATGGAA
* *
76300623 GATACAAACAATGGCAGATATATACAATAAAAATCAGTTTGATAATGGCATTCATACAAT-GATA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAAT-GCATTCATACAATGGA-A
* *
76300687 GATACAAACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAAT-GCATTCATACAATGGAA
76300751 GATACAAACAAT
1 GATACAAACAAT
76300763 AAACATCAAA
Statistics
Matches: 300, Mismatches: 25, Indels: 28
0.85 0.07 0.08
Matches are distributed among these distances:
62 103 0.34
63 2 0.01
64 124 0.41
65 2 0.01
66 3 0.01
67 5 0.02
68 2 0.01
70 2 0.01
71 5 0.02
72 3 0.01
74 49 0.16
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.25
Consensus pattern (63 bp):
GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGAA
Found at i:76300572 original size:26 final size:26
Alignment explanation
Indices: 76300543--76300593 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
76300533 CACTCATACA
* *
76300543 ATGGCAGATATACACAATAAACATCC
1 ATGGCAGATACAAACAATAAACATCC
76300569 ATGGCAGATACAAACAATAAACATC
1 ATGGCAGATACAAACAATAAACATC
76300594 AATTTGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.49, C:0.22, G:0.12, T:0.18
Consensus pattern (26 bp):
ATGGCAGATACAAACAATAAACATCC
Found at i:76300649 original size:16 final size:16
Alignment explanation
Indices: 76300611--76300650 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
76300601 TAATGACATT
76300611 CATACAATGGCAGATA
1 CATACAATGGCAGATA
*
76300627 CAAACAATGGCAGATA
1 CATACAATGGCAGATA
*
76300643 TATACAAT
1 CATACAAT
76300651 AAAAATCAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.20
Consensus pattern (16 bp):
CATACAATGGCAGATA
Found at i:76300912 original size:12 final size:12
Alignment explanation
Indices: 76300895--76300934 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
76300885 AAAAATAACC
76300895 CTAAATCAAAAT
1 CTAAATCAAAAT
*
76300907 CTAAATCGAAAT
1 CTAAATCAAAAT
* *
76300919 CAAAATCAAATT
1 CTAAATCAAAAT
76300931 CTAA
1 CTAA
76300935 TCCTAAATTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.55, C:0.17, G:0.03, T:0.25
Consensus pattern (12 bp):
CTAAATCAAAAT
Found at i:76300978 original size:18 final size:18
Alignment explanation
Indices: 76300897--76300978 Score: 61
Period size: 18 Copynumber: 4.9 Consensus size: 18
76300887 AAATAACCCT
*
76300897 AAATCAAAATCTAAATCG
1 AAATCAAAATCTAAATTG
*
76300915 AAATCAAAATC-AAATTC
1 AAATCAAAATCTAAATTG
*
76300932 TAATC-----CTAAATTG
1 AAATCAAAATCTAAATTG
* *
76300945 AGATCGAAAT-TGAAATTG
1 AAATCAAAATCT-AAATTG
76300963 AAATCAAAATCTAAAT
1 AAATCAAAATCTAAAT
76300979 CAGAATCAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
12 1 0.02
13 8 0.17
17 9 0.19
18 29 0.60
19 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.27
Consensus pattern (18 bp):
AAATCAAAATCTAAATTG
Done.