Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 246 of 438
Found at i:76301020 original size:6 final size:6
Alignment explanation
Indices: 76301006--76301050 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
76300996 TCAAAATTGT
* *
76301006 AATCAA AATCGA AAT-AGA AATCAA AATCAA AATCAA AATCGA AAT
1 AATCAA AATCAA AATCA-A AATCAA AATCAA AATCAA AATCAA AAT
76301051 TAAATTTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
6 33 0.97
7 1 0.03
ACGTcount: A:0.62, C:0.13, G:0.07, T:0.18
Consensus pattern (6 bp):
AATCAA
Found at i:76301050 original size:18 final size:18
Alignment explanation
Indices: 76300996--76301038 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
76300986 AGTGAGTGTT
* *
76300996 TCAAAATTGTAATCAAAA
1 TCAAAATAGAAATCAAAA
*
76301014 TCGAAATAGAAATCAAAA
1 TCAAAATAGAAATCAAAA
76301032 TCAAAAT
1 TCAAAAT
76301039 CAAAATCGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.58, C:0.12, G:0.07, T:0.23
Consensus pattern (18 bp):
TCAAAATAGAAATCAAAA
Found at i:76301584 original size:31 final size:29
Alignment explanation
Indices: 76301545--76301617 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 29
76301535 GATAATTGTT
*
76301545 AGTTAGTGACTGTTTTGTCACTTTTTTATA
1 AGTTAGTGACTGTTTTGTCACTTTTTGA-A
** *
76301575 ACGTTAGTGACCATTTTGTTACTTTTTGAA
1 A-GTTAGTGACTGTTTTGTCACTTTTTGAA
76301605 AGTTAAGTGACTG
1 AGTT-AGTGACTG
76301618 AAATGAAACC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 3 0.09
30 9 0.26
31 23 0.66
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (29 bp):
AGTTAGTGACTGTTTTGTCACTTTTTGAA
Found at i:76305475 original size:22 final size:22
Alignment explanation
Indices: 76305450--76305492 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76305440 GAAAGTAAGG
76305450 AAATAAATA-AAAGAAAAAAATT
1 AAATAAA-ACAAAGAAAAAAATT
*
76305472 AAATAAAACAAATAAAAAAAT
1 AAATAAAACAAAGAAAAAAAT
76305493 GGTAGTAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (22 bp):
AAATAAAACAAAGAAAAAAATT
Found at i:76305617 original size:3 final size:3
Alignment explanation
Indices: 76305609--76305653 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
76305599 GTAAAAAATG
76305609 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
76305654 CAAAAAGTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:76307421 original size:44 final size:44
Alignment explanation
Indices: 76307371--76307893 Score: 251
Period size: 44 Copynumber: 11.8 Consensus size: 44
76307361 AGGAATTGGT
* *
76307371 GCTTCGATCCACTCCAATGTAATTTCAAGGAGA-AGAGATTTGTA
1 GCTTCGATCTACTCCACTGTAATTTCAAGGAGATA-AGATTTGTA
* *
76307415 GCTTCGATCTACTCCGCTAG-AACTTT-AAGGAGATAAGAATTGGTA
1 GCTTCGATCTACTCCACT-GTAA-TTTCAAGGAGATAAG-ATTTGTA
** * * * * * * * *
76307460 ATTTCAACCTGCTCCACTATAACTTCAGGGAGATAAGGTTTGTT
1 GCTTCGATCTACTCCACTGTAATTTCAAGGAGATAAGATTTGTA
** * ** * * *
76307504 TATTCGACCCGCTCCAATGTAATTTCAGGGAGAAAAGATTTGTA
1 GCTTCGATCTACTCCACTGTAATTTCAAGGAGATAAGATTTGTA
* * * ** *
76307548 CCTTCGATCTACTCCACTGGAACTTCCAA-GAGATAAGGCTGGTA
1 GCTTCGATCTACTCCACTGTAA-TTTCAAGGAGATAAGATTTGTA
* * * * * *
76307592 GCTTCAATCTGCTCCAATGTAATTTTAGGGA-AAATAGATTTGTA
1 GCTTCGATCTACTCCACTGTAATTTCAAGGAGATA-AGATTTGTA
* * * * * *
76307636 GCTTCGATCTACTCTACTGGAACTTCAAGGAGACAAAAATTGGTA
1 GCTTCGATCTACTCCACTGTAATTTCAAGGAGA-TAAGATTTGTA
** * * *
76307681 ATTTC-AACTTACTCCACTATAACTTC-AGGAAGATAA-AGTTTGT-
1 GCTTCGATC-TACTCCACTGTAATTTCAAGG-AGATAAGA-TTTGTA
* * * * *
76307724 GTATTCGACCCATTCCAATGTAATTT-AAGGGAGA-AGAGATTTGTA
1 G-CTTCGATCTACTCCACTGTAATTTCAA-GGAGATA-AGATTTGTA
* * * ** * *
76307769 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATAAGGCTGGTG
1 GCTTCGATCTACTCCACTGTAATTTCAAGGAGATAAGATTTGTA
* * * * *
76307813 GTTTCAATCTACTCTAATGTAATTTCAGGGAGA-AGAGATTTGTA
1 GCTTCGATCTACTCCACTGTAATTTCAAGGAGATA-AGATTTGTA
* * *
76307857 GCTTCAATCTACTCCGCTGGAATTTCAAGGAGATAAG
1 GCTTCGATCTACTCCACTGTAATTTCAAGGAGATAAG
76307894 GCTTAGTAAT
Statistics
Matches: 347, Mismatches: 107, Indels: 50
0.69 0.21 0.10
Matches are distributed among these distances:
43 8 0.02
44 260 0.75
45 77 0.22
46 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
GCTTCGATCTACTCCACTGTAATTTCAAGGAGATAAGATTTGTA
Found at i:76307731 original size:221 final size:221
Alignment explanation
Indices: 76307367--76307943 Score: 807
Period size: 221 Copynumber: 2.6 Consensus size: 221
76307357 GTATAGGAAT
* * *
76307367 TGGT-GCTTCGATCCACTCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
1 TGGTAGCTTCAATCTACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
* * * *
76307431 CTAGAACTTTAAGGAGATAAGAATTGGTAATTTCAACCTGCTCCACTATAACTTCAGGGAGATAA
66 CTGGAACTTCAAGGAGATAAGAATTGGTAATTTCAACTTGCTCCACTATAACTTCAGGAAGATAA
* * *
76307496 GGTTTGTTTATTCGACCCGCTCCAATGTAATTTCAGGGAGAAAAGATTTGTACCTTCGATCTACT
131 GGTTTGTGTATTCGACCCACTCCAATGTAATTTAAGGGAGAAAAGATTTGTACCTTCGATCTACT
76307561 CCACTGGAACTTCCAA-GAGATAAGGC
196 CCACTGGAACTT-CAAGGAGATAAGGC
* * * * **
76307587 TGGTAGCTTCAATCTGCTCCAATGTAATTTTAGGGAAAATAGATTTGTAGCTTCGATCTACTCTA
1 TGGTAGCTTCAATCTACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
* * *
76307652 CTGGAACTTCAAGGAGACAAAAATTGGTAATTTCAACTTACTCCACTATAACTTCAGGAAGATAA
66 CTGGAACTTCAAGGAGATAAGAATTGGTAATTTCAACTTGCTCCACTATAACTTCAGGAAGATAA
* * * *
76307717 AGTTTGTGTATTCGACCCATTCCAATGTAATTTAAGGGAGAAGAGATTTGTAGCTTCGATCTACT
131 GGTTTGTGTATTCGACCCACTCCAATGTAATTTAAGGGAGAAAAGATTTGTACCTTCGATCTACT
*
76307782 CCGCTGGAACTTCAAGGAGATAAGGC
196 CCACTGGAACTTCAAGGAGATAAGGC
* * * *
76307808 TGGTGGTTTCAATCTACTCTAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCG
1 TGGTAGCTTCAATCTACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
* ** * * * * *
76307873 CTGGAATTTCAAGGAGATAAGGCTTAGTAATTTTAACTTGTTTCACTGTAACTTCAGGAAGATAA
66 CTGGAACTTCAAGGAGATAAGAATTGGTAATTTCAACTTGCTCCACTATAACTTCAGGAAGATAA
76307938 GGTTTG
131 GGTTTG
76307944 CTATCTTCAG
Statistics
Matches: 309, Mismatches: 46, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
220 7 0.02
221 302 0.98
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (221 bp):
TGGTAGCTTCAATCTACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
CTGGAACTTCAAGGAGATAAGAATTGGTAATTTCAACTTGCTCCACTATAACTTCAGGAAGATAA
GGTTTGTGTATTCGACCCACTCCAATGTAATTTAAGGGAGAAAAGATTTGTACCTTCGATCTACT
CCACTGGAACTTCAAGGAGATAAGGC
Found at i:76307893 original size:88 final size:89
Alignment explanation
Indices: 76307739--76308000 Score: 305
Period size: 88 Copynumber: 2.9 Consensus size: 89
76307729 CGACCCATTC
* *
76307739 CAATGTAATTTAAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATA
1 CAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTCAAGGAGATA
76307804 AGGCTGGTGGTTTCAATCTACTCT
66 AGGCTGGTGGTTTCAATCTACTCT
*
76307828 -AATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCGCTGGAATTTCAAGGAGATA
1 CAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTCAAGGAGATA
* ** * ** *
76307892 AGGCTTAGTAATTTTAA-CTTGTTT
66 AGGC-TGGTGGTTTCAATCTACTCT
* * * * * * * * *
76307916 CACTGTAACTTCAGGAAGATA-AGGTTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGA
1 CAATGTAATTTCAGGGAGA-AGAGATTTG-TAGCTTCAATCTACTCCGCTGGAACTTCAAGGAGA
76307980 TAAGGCTGGTGGTTTCAATCT
64 TAAGGCTGGTGGTTTCAATCT
76308001 GCTCCACTGC
Statistics
Matches: 144, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
88 69 0.48
89 37 0.26
90 38 0.26
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (89 bp):
CAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTCAAGGAGATA
AGGCTGGTGGTTTCAATCTACTCT
Found at i:76307965 original size:45 final size:44
Alignment explanation
Indices: 76307916--76308027 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 44
76307906 TAACTTGTTT
* * *
76307916 CACTGTAACTTCAGGAAGATAAGGTTTGCT-ATCTTCAGTCTACTC
1 CACTGCAACTTCAGGAAGATAAGG-CTGCTGAT-TTCAATCTACTC
* * * *
76307961 CACTGCAACTTCAGGGAGATAAGGCTGGTGGTTTCAATCTGCTC
1 CACTGCAACTTCAGGAAGATAAGGCTGCTGATTTCAATCTACTC
*
76308005 CACTGCAACTTCAAGAAGATAAG
1 CACTGCAACTTCAGGAAGATAAG
76308028 ATCCGCCATA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 34 0.60
45 23 0.40
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
CACTGCAACTTCAGGAAGATAAGGCTGCTGATTTCAATCTACTC
Found at i:76308168 original size:44 final size:44
Alignment explanation
Indices: 76308092--76308261 Score: 146
Period size: 44 Copynumber: 3.8 Consensus size: 44
76308082 ATTCGCTGTT
* * * * * *
76308092 TTCAATCTGCTACGCTGCAACTTCAGGGAGATAAG-GCTAGCGTC
1 TTCAATCTACTCCACTGCAACTTCAAGAAGATAAGATCTA-CGTC
* * * *
76308136 TTCAATCTACTCCACTGCGACGTCAAGAAGATAAGATCCACCATC
1 TTCAATCTACTCCACTGCAACTTCAAGAAGATAAGATCTA-CGTC
* * *
76308181 TTCGATCTACTCCACTGCAACTTCAATG-AGATAAGATCTATGAC
1 TTCAATCTACTCCACTGCAACTTCAA-GAAGATAAGATCTACGTC
* * * *
76308225 TTCAATCTGCTCCACTGCTACTTCAGGAAGATGAGAT
1 TTCAATCTACTCCACTGCAACTTCAAGAAGATAAGAT
76308262 TTGTAGATTT
Statistics
Matches: 100, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
43 1 0.01
44 59 0.59
45 39 0.39
46 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (44 bp):
TTCAATCTACTCCACTGCAACTTCAAGAAGATAAGATCTACGTC
Found at i:76314060 original size:4 final size:4
Alignment explanation
Indices: 76314051--76314083 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
76314041 AAGAAAAACA
76314051 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
76314084 TAAATAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:76315589 original size:2 final size:2
Alignment explanation
Indices: 76315584--76315610 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76315574 CCGGCTTGAA
76315584 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
76315611 ATTTCGACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76318679 original size:9 final size:9
Alignment explanation
Indices: 76318513--76318813 Score: 81
Period size: 10 Copynumber: 32.0 Consensus size: 9
76318503 TTTTTTAATT
76318513 TTAT-AAAA
1 TTATAAAAA
76318521 TTAATAAAACA
1 TT-ATAAAA-A
*
76318532 TGTTTAAAATA
1 T-TATAAAA-A
*
76318543 TT-TAAAATT
1 TTATAAAA-A
76318552 TTATAAAAA
1 TTATAAAAA
76318561 TATATAAAAA
1 T-TATAAAAA
76318571 TTATTAAAAA
1 TTA-TAAAAA
*
76318581 TCATAAAAAA
1 TTAT-AAAAA
76318591 TTCAT-AAAA
1 TT-ATAAAAA
76318600 -TAT-AAAA
1 TTATAAAAA
76318607 -TATTAAAAA
1 TTA-TAAAAA
*
76318616 -TATTAAAA
1 TTATAAAAA
* * *
76318624 TTGACATACAT
1 TT-ATA-AAAA
*
76318635 TTATAGAAA
1 TTATAAAAA
*
76318644 TGATAAAAAA
1 TTAT-AAAAA
76318654 TTATAAAAA
1 TTATAAAAA
*
76318663 CTTTTAAAAA
1 -TTATAAAAA
76318673 TTATAAAAAA
1 TTAT-AAAAA
**
76318683 AAAGTAATAAA
1 TTA-TAA-AAA
*
76318694 TTTTAATAAA
1 TTATAA-AAA
*
76318704 TTAT--TAA
1 TTATAAAAA
* *
76318711 GTAT-ATAA
1 TTATAAAAA
76318719 TTAATAAAATA
1 TT-ATAAAA-A
* *
76318730 TATTTAAAATT
1 T-TATAAAA-A
76318741 TTATAAAAA
1 TTATAAAAA
*
76318750 CTTGTAAAAA
1 -TTATAAAAA
76318760 TTCATAAAAA
1 TT-ATAAAAA
76318770 CTTATAAATAA
1 -TTATAAA-AA
76318781 -TATAAAAA
1 TTATAAAAA
*
76318789 TTCTAATAAA
1 TTATAA-AAA
76318799 -T-TAAAAA
1 TTATAAAAA
76318806 TT-TAAAAA
1 TTATAAAAA
76318814 AAAATTTAAA
Statistics
Matches: 225, Mismatches: 37, Indels: 62
0.69 0.11 0.19
Matches are distributed among these distances:
7 16 0.07
8 25 0.11
9 52 0.23
10 98 0.44
11 32 0.14
12 2 0.01
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:76318830 original size:13 final size:12
Alignment explanation
Indices: 76318801--76318829 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
76318791 CTAATAAATT
76318801 AAAAATTTAAAA
1 AAAAATTTAAAA
76318813 AAAAATTTAAAA
1 AAAAATTTAAAA
76318825 AAAAA
1 AAAAA
76318830 AACCATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAATTTAAAA
Found at i:76319482 original size:28 final size:26
Alignment explanation
Indices: 76319451--76319686 Score: 95
Period size: 28 Copynumber: 8.5 Consensus size: 26
76319441 AATTTTTACA
76319451 ATTTTATATCAATTTTAATATTTTAATT
1 ATTTT-TAT-AATTTTAATATTTTAATT
* **
76319479 ATTTTTTATGATTTTTAAGT-TTTTAAGA
1 A-TTTTTAT-AATTTTAA-TATTTTAATT
* * *
76319507 ATTTTAATAATTTTTTATAAAATTTTAAAT
1 ATTTTTATAA---TTT-TAATATTTTAATT
* *
76319537 ATGTTTTATTAATTTT-ATATTTTTTATA
1 AT-TTTTA-TAATTTTAATA-TTTTAATT
* *
76319565 ATTTTTATAATTTTTAGATTTT-ATT
1 ATTTTTATAATTTTAATATTTTAATT
* * *
76319590 AGTTTTTTTATGTTTTTATAATATTT-A-T
1 A-TTTTTATA-ATTTTAAT-AT-TTTAATT
* * * *
76319618 AGTTTTTATTATTTTATTATTTTTATA
1 A-TTTTTATAATTTTAATATTTTAATT
*
76319645 ATTTTATATCAATTTTAATATTTTAAAT
1 ATTTT-TAT-AATTTTAATATTTTAATT
*
76319673 ATTTTTAAAATTTT
1 ATTTTTATAATTTT
76319687 TAAAATACTT
Statistics
Matches: 158, Mismatches: 31, Indels: 40
0.69 0.14 0.17
Matches are distributed among these distances:
25 6 0.04
26 32 0.20
27 32 0.20
28 55 0.35
29 15 0.09
30 11 0.07
31 4 0.03
32 3 0.02
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (26 bp):
ATTTTTATAATTTTAATATTTTAATT
Found at i:76319544 original size:58 final size:58
Alignment explanation
Indices: 76319470--76319579 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 58
76319460 CAATTTTAAT
* * *
76319470 ATTTTAATTATTTTTTATGATTTTTA-AGTTTTTAAGAATTTTAATAATTTTTTATAAA
1 ATTTTAAATATGTTTTATGAATTTTATA-TTTTTAAGAATTTTAATAATTTTTTATAAA
* * * *
76319528 ATTTTAAATATGTTTTATTAATTTTATATTTTTTATAATTTTTATAATTTTT
1 ATTTTAAATATGTTTTATGAATTTTATATTTTTAAGAATTTTAATAATTTTT
76319580 AGATTTTATT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
58 43 0.98
59 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (58 bp):
ATTTTAAATATGTTTTATGAATTTTATATTTTTAAGAATTTTAATAATTTTTTATAAA
Found at i:76319576 original size:26 final size:26
Alignment explanation
Indices: 76319540--76319686 Score: 102
Period size: 26 Copynumber: 5.5 Consensus size: 26
76319530 TTTAAATATG
76319540 TTTTATTAATTTTATATTTTTTATAAT
1 TTTTA-TAATTTTATATTTTTTATAAT
* *
76319567 TTTTATAATTTTTAGATTTTATTAGT-TT
1 TTTTATAA-TTTTATATTTT-TTA-TAAT
** * * *
76319595 TTTTATGTTTTTATAATATTTATAGT
1 TTTTATAATTTTATATTTTTTATAAT
*
76319621 TTTTATTATTTTAT-TATTTTTATAAT
1 TTTTATAATTTTATAT-TTTTTATAAT
* *
76319647 TTTATATCAATTTTA-ATATTTTAAATAT
1 TTT-TAT-AATTTTATATTTTTTATA-AT
*
76319675 TTTTAAAATTTT
1 TTTTATAATTTT
76319687 TAAAATACTT
Statistics
Matches: 94, Mismatches: 17, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
25 1 0.01
26 36 0.38
27 34 0.36
28 22 0.23
29 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTTATAATTTTATATTTTTTATAAT
Found at i:76319660 original size:11 final size:10
Alignment explanation
Indices: 76319439--76319679 Score: 82
Period size: 9 Copynumber: 25.9 Consensus size: 10
76319429 ATTTTTTTTG
76319439 ATAATTTT-T
1 ATAATTTTAT
*
76319448 ACAATTTTAT
1 ATAATTTTAT
76319458 ATCAATTTTA-
1 AT-AATTTTAT
76319468 AT-ATTTTA-
1 ATAATTTTAT
* *
76319476 ATTATTTTTT
1 ATAATTTTAT
*
76319486 ATGATTTT-T
1 ATAATTTTAT
*
76319495 A-AGTTTT-T
1 ATAATTTTAT
*
76319503 AAGAATTTTA-
1 -ATAATTTTAT
76319513 ATAATTTTTTAT
1 ATAA--TTTTAT
* *
76319525 AAAATTTTAA
1 ATAATTTTAT
*
76319535 ATATGTTTTAT
1 ATA-ATTTTAT
76319546 -TAATTTTAT
1 ATAATTTTAT
76319555 AT--TTTT-T
1 ATAATTTTAT
76319562 ATAATTTT-T
1 ATAATTTTAT
76319571 ATAATTTT-T
1 ATAATTTTAT
*
76319580 A-GATTTTAT
1 ATAATTTTAT
*
76319589 -TAGTTTT-T
1 ATAATTTTAT
* *
76319597 -TTATGTTTTT
1 ATAAT-TTTAT
*
76319607 ATAATATT-T
1 ATAATTTTAT
*
76319616 ATAGTTTT-T
1 ATAATTTTAT
*
76319625 ATTATTTTAT
1 ATAATTTTAT
76319635 -T-ATTTT-T
1 ATAATTTTAT
76319642 ATAATTTTAT
1 ATAATTTTAT
76319652 ATCAATTTTA-
1 AT-AATTTTAT
*
76319662 AT-ATTTTAA
1 ATAATTTTAT
*
76319671 ATATTTTTA
1 ATAATTTTA
76319680 AAATTTTTAA
Statistics
Matches: 180, Mismatches: 26, Indels: 51
0.70 0.10 0.20
Matches are distributed among these distances:
7 4 0.02
8 37 0.21
9 69 0.38
10 40 0.22
11 27 0.15
12 3 0.02
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.63
Consensus pattern (10 bp):
ATAATTTTAT
Found at i:76319690 original size:19 final size:18
Alignment explanation
Indices: 76319635--76319686 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
76319625 ATTATTTTAT
* *
76319635 TATTTTTATAATTTTATA
1 TATTTTTAAAATTTTAAA
* *
76319653 TCAATTTTAATATTTTAAA
1 T-ATTTTTAAAATTTTAAA
76319672 TATTTTTAAAATTTT
1 TATTTTTAAAATTTT
76319687 TAAAATACTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTAAAATTTTAAA
Found at i:76321790 original size:40 final size:40
Alignment explanation
Indices: 76321735--76321868 Score: 178
Period size: 40 Copynumber: 3.4 Consensus size: 40
76321725 TCGTTATTTG
* * *
76321735 TGGCACTTAGTGTGCGATACGATATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
*
76321775 TGGCACTTAGTGTGCGATTCGACATTGCTTCAGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
* * * * *
76321815 TGGAACTTAGTGTGCAATTTGAGATAGCTTCAGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
*
76321855 CGGCACTTAGTGTG
1 TGGCACTTAGTGTG
76321869 TGAGATATTG
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
Found at i:76326751 original size:23 final size:22
Alignment explanation
Indices: 76326711--76326818 Score: 121
Period size: 23 Copynumber: 4.8 Consensus size: 22
76326701 AAGCTCCTTC
76326711 GAGCTGAACA-TAAGCTCTATT
1 GAGCTGAACAGTAAGCTCTATT
*
76326732 GAGCTGAAACGGTAAGCTCTATT
1 GAGCTG-AACAGTAAGCTCTATT
* *
76326755 GAGCTGAACAGTAAGCTCCAAT
1 GAGCTGAACAGTAAGCTCTATT
*
76326777 GAGCTGAAACAGTAAGCTCT-TAC
1 GAGCTG-AACAGTAAGCTCTAT-T
*
76326800 AAGCTGAATCAGTAAGCTC
1 GAGCTGAA-CAGTAAGCTC
76326819 ATACGAGTTG
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.08
22 24 0.32
23 44 0.59
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (22 bp):
GAGCTGAACAGTAAGCTCTATT
Found at i:76326772 original size:45 final size:44
Alignment explanation
Indices: 76326697--76326818 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 44
76326687 GAGTCATGGT
* *
76326697 CGGTAAGCTCCTTCGAGCTGAACA-TAAGCTCTATTGAGCTGAAA
1 CGGTAAGCT-CTTCGAGCTGAACAGTAAGCTCCAATGAGCTGAAA
*
76326741 CGGTAAGCTCTATTGAGCTGAACAGTAAGCTCCAATGAGCTGAAA
1 CGGTAAGCTCT-TCGAGCTGAACAGTAAGCTCCAATGAGCTGAAA
* *
76326786 CAGTAAGCTCTTACAAGCTGAATCAGTAAGCTC
1 CGGTAAGCTCTT-CGAGCTGAA-CAGTAAGCTC
76326819 ATACGAGTTG
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
43 2 0.03
44 21 0.31
45 35 0.51
46 10 0.15
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (44 bp):
CGGTAAGCTCTTCGAGCTGAACAGTAAGCTCCAATGAGCTGAAA
Found at i:76328702 original size:20 final size:20
Alignment explanation
Indices: 76328661--76328702 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
76328651 ACCTCCTACA
* *
76328661 AGCTCATTTAGCTCGTTCCT
1 AGCTCATTGAGCTCATTCCT
*
76328681 AGCTCATTGAGCTCATTTCT
1 AGCTCATTGAGCTCATTCCT
76328701 AG
1 AG
76328703 TCGTTTAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCATTGAGCTCATTCCT
Found at i:76328936 original size:20 final size:21
Alignment explanation
Indices: 76328913--76328953 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
76328903 AAATTTTTCT
76328913 TAGCT-GAATTTAAGTTGTTC
1 TAGCTCGAATTTAAGTTGTTC
76328933 TAGCTGCCGAATTTAAGTTGT
1 TAGCT--CGAATTTAAGTTGT
76328954 CTTTAAGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
23 13 0.72
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.41
Consensus pattern (21 bp):
TAGCTCGAATTTAAGTTGTTC
Found at i:76330941 original size:34 final size:34
Alignment explanation
Indices: 76330903--76331017 Score: 97
Period size: 34 Copynumber: 3.4 Consensus size: 34
76330893 ACCCATAGTC
*
76330903 CTTGTGTTTTTGGTCGACCGCAACAATCATCATT
1 CTTGTATTTTTGGTCGACCGCAACAATCATCATT
* * *** * ** *
76330937 CTTGTATTTTTGATTGGGTTGCCACACCCAT-AGTC
1 CTTGTATTTTTG-GTCGACCGCAACAATCATCA-TT
* *
76330972 CTTGTGTTTTTGGTCAACCGCAACAATCATCATT
1 CTTGTATTTTTGGTCGACCGCAACAATCATCATT
76331006 CTTGTATTTTTG
1 CTTGTATTTTTG
76331018 ATTGGGTTGC
Statistics
Matches: 56, Mismatches: 22, Indels: 6
0.67 0.26 0.07
Matches are distributed among these distances:
34 33 0.59
35 23 0.41
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (34 bp):
CTTGTATTTTTGGTCGACCGCAACAATCATCATT
Found at i:76331049 original size:69 final size:69
Alignment explanation
Indices: 76330872--76331034 Score: 281
Period size: 69 Copynumber: 2.4 Consensus size: 69
76330862 GTCATCCCCA
* * * * *
76330872 TATTTATGGTTGGGTCGCCATACCCATAGTCCTTGTGTTTTTGGTCGACCGCAACAATCATCATT
1 TATTTTTGATTGGGTTGCCACACCCATAGTCCTTGTGTTTTTGGTCAACCGCAACAATCATCATT
76330937 CTTG
66 CTTG
76330941 TATTTTTGATTGGGTTGCCACACCCATAGTCCTTGTGTTTTTGGTCAACCGCAACAATCATCATT
1 TATTTTTGATTGGGTTGCCACACCCATAGTCCTTGTGTTTTTGGTCAACCGCAACAATCATCATT
76331006 CTTG
66 CTTG
76331010 TATTTTTGATTGGGTTGCCACACCC
1 TATTTTTGATTGGGTTGCCACACCC
76331035 GTCATCTTCG
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 89 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (69 bp):
TATTTTTGATTGGGTTGCCACACCCATAGTCCTTGTGTTTTTGGTCAACCGCAACAATCATCATT
CTTG
Found at i:76331250 original size:26 final size:27
Alignment explanation
Indices: 76331220--76331273 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
76331210 CAAATTCATT
* *
76331220 GCAAGTT-GTGTTTGATAGTTGGTTTG
1 GCAAGTTGGGGTTCGATAGTTGGTTTG
*
76331246 GCAAGTTGGGGTTCGCTAGTTGGTTTG
1 GCAAGTTGGGGTTCGATAGTTGGTTTG
76331273 G
1 G
76331274 AAAACTAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.13, C:0.07, G:0.39, T:0.41
Consensus pattern (27 bp):
GCAAGTTGGGGTTCGATAGTTGGTTTG
Found at i:76331284 original size:27 final size:27
Alignment explanation
Indices: 76331235--76331286 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
76331225 TTGTGTTTGA
* ** *
76331235 TAGTTGGTTTGGCAAGTTGGGGTTCGC
1 TAGTTGGTTTGGAAAACTAGGGTTCGC
76331262 TAGTTGGTTTGGAAAACTAGGGTTC
1 TAGTTGGTTTGGAAAACTAGGGTTC
76331287 TTCAGTCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.17, C:0.10, G:0.37, T:0.37
Consensus pattern (27 bp):
TAGTTGGTTTGGAAAACTAGGGTTCGC
Found at i:76337664 original size:12 final size:12
Alignment explanation
Indices: 76337647--76337671 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76337637 GCATCACATT
76337647 TTCAGAAAAATC
1 TTCAGAAAAATC
76337659 TTCAGAAAAATC
1 TTCAGAAAAATC
76337671 T
1 T
76337672 GATATCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (12 bp):
TTCAGAAAAATC
Found at i:76345180 original size:18 final size:18
Alignment explanation
Indices: 76345157--76345192 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76345147 AATCCACCTT
76345157 TAATTACTTCGTGATGTC
1 TAATTACTTCGTGATGTC
76345175 TAATTACTTCGTGATGTC
1 TAATTACTTCGTGATGTC
76345193 GATATACGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (18 bp):
TAATTACTTCGTGATGTC
Found at i:76348918 original size:34 final size:34
Alignment explanation
Indices: 76348880--76348949 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
76348870 CAAAAAAGCC
* *
76348880 CTAAACCCTACTTTAAATAAACAAAACACTAACA
1 CTAAACCATAATTTAAATAAACAAAACACTAACA
* *
76348914 CTAAACCATAATTTAAATAAACTAAACCCTAACA
1 CTAAACCATAATTTAAATAAACAAAACACTAACA
76348948 CT
1 CT
76348950 TAAAAATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (34 bp):
CTAAACCATAATTTAAATAAACAAAACACTAACA
Found at i:76349470 original size:2 final size:2
Alignment explanation
Indices: 76349463--76349488 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76349453 TTAGAATTAA
76349463 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
76349489 GAATACGTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76352928 original size:26 final size:26
Alignment explanation
Indices: 76352899--76352959 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
76352889 CTATATATAG
76352899 ATGCCGAATGTGAGGTTGCCAGGCTA
1 ATGCCGAATGTGAGGTTGCCAGGCTA
76352925 ATGCCGAATGTGAGGTTGCCAGGCTA
1 ATGCCGAATGTGAGGTTGCCAGGCTA
76352951 ATGCCGAAT
1 ATGCCGAAT
76352960 TCTCCCTCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.23
Consensus pattern (26 bp):
ATGCCGAATGTGAGGTTGCCAGGCTA
Found at i:76354001 original size:29 final size:30
Alignment explanation
Indices: 76353950--76354041 Score: 129
Period size: 29 Copynumber: 3.2 Consensus size: 30
76353940 GAAAGCATGT
*
76353950 ATATGAATG-TGATTTGGGTCTAATGGGCC
1 ATATGAATGATGATTTGGGCCTAATGGGCC
76353979 ATACT-AAT-ATGATTTGGGCCTAATGGGCC
1 ATA-TGAATGATGATTTGGGCCTAATGGGCC
*
76354008 ATATGAATGA-GATTTGGGCCTAGTGGGCC
1 ATATGAATGATGATTTGGGCCTAATGGGCC
76354037 ATATG
1 ATATG
76354042 CATTATGTAG
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
28 1 0.02
29 54 0.95
30 2 0.04
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (30 bp):
ATATGAATGATGATTTGGGCCTAATGGGCC
Found at i:76360449 original size:50 final size:51
Alignment explanation
Indices: 76360371--76360500 Score: 192
Period size: 50 Copynumber: 2.6 Consensus size: 51
76360361 GGACCATGGC
76360371 AACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGT
1 AACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-T
* *
76360422 GA-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAAT
1 AACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT
* * *
76360472 AACAAGTGAAAAGTGGTAGCTTCTGCTAC
1 AACAAGTGATAAGTGATAGCTTCGGCTAC
76360501 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
AACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT
Found at i:76360514 original size:31 final size:31
Alignment explanation
Indices: 76360476--76360593 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
76360466 ACAAATAACA
* *
76360476 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
76360507 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
76360538 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
76360569 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
76360594 AAGTGACAAG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:76360722 original size:46 final size:43
Alignment explanation
Indices: 76360622--76360783 Score: 148
Period size: 46 Copynumber: 3.7 Consensus size: 43
76360612 GATTTCCGTA
* * * * *
76360622 TAAGACCATATCTGGGATATGGCATCGGTGTGAATATGCTACTGTA
1 TAAGACCATAGCTGGGATATGGCATC-ATGAG-ATATG-TATTGTG
* *
76360668 TAATACCATATCTGGGATATGGCATCAATGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGATATGGCATC-ATGAGATATGT-ATT-GTG
* * *
76360714 TAAGACCATAGCTGGGCTATGGCATC--GATATATGAATATGTG
1 TAAGACCATAGCTGGGATATGGCATCATGAGATATGTAT-TGTG
*
76360756 TAAGACCATAGCTGGGCTATGGCATCAT
1 TAAGACCATAGCTGGGATATGGCATCAT
76360784 TATGTGAAGA
Statistics
Matches: 100, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
42 31 0.31
43 8 0.08
44 1 0.01
45 7 0.07
46 53 0.53
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
TAAGACCATAGCTGGGATATGGCATCATGAGATATGTATTGTG
Found at i:76360769 original size:42 final size:42
Alignment explanation
Indices: 76360711--76360822 Score: 163
Period size: 42 Copynumber: 2.7 Consensus size: 42
76360701 TATGTGATTC
*
76360711 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATATGAAGAT
*
76360753 GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCATTATATGAAGAT
* **
76360795 GTGTAAGACCATAGTTGAACTATGGCAT
1 GTGTAAGACCATAGCTGGGCTATGGCAT
76360823 TGAGAAAATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 1 0.02
42 63 0.98
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCATTATATGAAGAT
Found at i:76369893 original size:30 final size:31
Alignment explanation
Indices: 76369857--76369919 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76369847 ACTTATTTTA
76369857 TTATT-AATTTTGTTATTATTTTAAAGGCAT
1 TTATTAAATTTTGTTATTATTTTAAAGGCAT
* *
76369887 TTATTAAATTTTTTTATTATTTTAGAGGCAT
1 TTATTAAATTTTGTTATTATTTTAAAGGCAT
76369918 TT
1 TT
76369920 GCTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.59
Consensus pattern (31 bp):
TTATTAAATTTTGTTATTATTTTAAAGGCAT
Found at i:76370060 original size:11 final size:12
Alignment explanation
Indices: 76370044--76370076 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
76370034 TATATATTTT
76370044 AAAATAATA-TA
1 AAAATAATATTA
76370055 AAAATAATATTA
1 AAAATAATATTA
76370067 AAAATTAATA
1 AAAA-TAATA
76370077 CGGGCAGGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 6 0.30
13 5 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AAAATAATATTA
Found at i:76371760 original size:20 final size:22
Alignment explanation
Indices: 76371721--76371760 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
76371711 TATCATGGTC
*
76371721 TAAGCTTAATATCTATCAATGT
1 TAAGCCTAATATCTATCAATGT
76371743 TAAGCCTAAT-TC-ATCAAT
1 TAAGCCTAATATCTATCAAT
76371761 TTCTTTACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 2 0.12
22 9 0.53
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (22 bp):
TAAGCCTAATATCTATCAATGT
Found at i:76378022 original size:22 final size:22
Alignment explanation
Indices: 76377997--76378041 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
76377987 TTTAATAAAA
76377997 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
76378019 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
76378041 A
1 A
76378042 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:76382618 original size:22 final size:22
Alignment explanation
Indices: 76382593--76382642 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
76382583 TTTAATAAAA
76382593 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
76382615 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
*
76382637 ACAATA
1 AAAATA
76382643 ATTTCTTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:76389128 original size:28 final size:28
Alignment explanation
Indices: 76389096--76389150 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
76389086 GAACTATTGC
76389096 AATATAACACACATTAAGCGTTGGATCA
1 AATATAACACACATTAAGCGTTGGATCA
** *
76389124 AATATAACATGCATTAAGTGTTGGATC
1 AATATAACACACATTAAGCGTTGGATC
76389151 TCTCACTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (28 bp):
AATATAACACACATTAAGCGTTGGATCA
Found at i:76389315 original size:2 final size:2
Alignment explanation
Indices: 76389303--76389341 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
76389293 CAATCTCAAG
*
76389303 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76389342 GTACTTCGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:76390428 original size:12 final size:14
Alignment explanation
Indices: 76390411--76390442 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
76390401 GTTGATGTAG
76390411 AATTAAAAT-ATT-
1 AATTAAAATAATTA
76390423 AATTAAAATAATTA
1 AATTAAAATAATTA
76390437 AATTAA
1 AATTAA
76390443 TTAACCTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 3 0.17
14 6 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAAATAATTA
Found at i:76394527 original size:14 final size:15
Alignment explanation
Indices: 76394496--76394528 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
76394486 CACAATTATG
76394496 TCATCTTGTTTAAAA
1 TCATCTTGTTTAAAA
*
76394511 TCATCTT-TTTGAAA
1 TCATCTTGTTTAAAA
76394525 TCAT
1 TCAT
76394529 GTATAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.48
Consensus pattern (15 bp):
TCATCTTGTTTAAAA
Found at i:76397988 original size:21 final size:21
Alignment explanation
Indices: 76397964--76398016 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
76397954 TATTATTTTC
76397964 TGAACTAGAGGCCATTCCTAT
1 TGAACTAGAGGCCATTCCTAT
*
76397985 TGAACTAGAGGCCGTTCCTAT
1 TGAACTAGAGGCCATTCCTAT
76398006 TGAACTAGAGG
1 TGAACTAGAGG
76398017 GGAGTGATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (21 bp):
TGAACTAGAGGCCATTCCTAT
Found at i:76400858 original size:36 final size:36
Alignment explanation
Indices: 76400811--76400880 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
76400801 GGTTCTGAGT
*
76400811 TTTATTTATGATTGTTCGAGCCCATACTCCAAGCGG
1 TTTATTTATGATTGTTCGAGCCCATACTCAAAGCGG
76400847 TTTATTTATGATTGTTCGAGCCCATACTCAAAGC
1 TTTATTTATGATTGTTCGAGCCCATACTCAAAGC
76400881 TATTTGTGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (36 bp):
TTTATTTATGATTGTTCGAGCCCATACTCAAAGCGG
Found at i:76406963 original size:19 final size:19
Alignment explanation
Indices: 76406939--76407001 Score: 117
Period size: 19 Copynumber: 3.3 Consensus size: 19
76406929 CATATCATAT
76406939 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
*
76406958 CATATCACATCTAAGATTG
1 CATATCATATCTAAGATTG
76406977 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
76406996 CATATC
1 CATATC
76407002 CTTAAAGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.35
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:76407565 original size:87 final size:85
Alignment explanation
Indices: 76407474--76407746 Score: 193
Period size: 87 Copynumber: 3.1 Consensus size: 85
76407464 TGAAAGCCAA
76407474 ATCTGCTATGTCTTCGATTTTCTCCTTGTGAACACAAAGGTGCCAAATCATCTTGGATCTGCTTC
1 ATCTGCTATGTCTTCGATTTTCTCCTTGTGAACAC-AAGGTGCCAAATCATCTTGGATCTGCTTC
76407539 AGTAAAATCATCTAAAGGTTAG
65 AGTAAAATCATC-AAAGGTTAG
* * ** ** * * *
76407561 ATCTGCCATGT-ATC--TGCTCTCC--GTCGAA-ATGGAGATGCTAGATCTGTTATCTTGGATCT
1 ATCTGCTATGTCTTCGATTTTCTCCTTGT-GAACA-CAAGGTGCCAAATC----ATCTTGGATCT
* ** * * *
76407620 ACTTTGGTGTGAGAA-CATCCGAAA-GTCAA
60 GC-TT-CAGT-AAAATCAT-C-AAAGGTTAG
* * *
76407649 ATTTGCTATGTCTTCGATTTGCTCATTGTGAACACAAGGATGCCAAATCATCTTGGATCTGCTTC
1 ATCTGCTATGTCTTCGATTTTCTCCTTGTGAACACAAGG-TGCCAAATCATCTTGGATCTGCTTC
76407714 AGTAAAATCATCAGAAGGTTAG
65 AGTAAAATCATCA-AAGGTTAG
76407736 ATCTGCTATGT
1 ATCTGCTATGT
76407747 ATCTGCTCTC
Statistics
Matches: 131, Mismatches: 35, Indels: 40
0.64 0.17 0.19
Matches are distributed among these distances:
82 12 0.09
83 3 0.02
84 6 0.05
85 1 0.01
86 20 0.15
87 30 0.23
88 19 0.15
89 21 0.16
91 4 0.03
92 5 0.04
93 10 0.08
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (85 bp):
ATCTGCTATGTCTTCGATTTTCTCCTTGTGAACACAAGGTGCCAAATCATCTTGGATCTGCTTCA
GTAAAATCATCAAAGGTTAG
Found at i:76407768 original size:175 final size:175
Alignment explanation
Indices: 76407465--76407794 Score: 565
Period size: 175 Copynumber: 1.9 Consensus size: 175
76407455 GTAAACACGT
* *
76407465 GAAAGCCAAATCTGCTATGTCTTCGATTTTCTCCTTGTGAACACAAAGGTGCCAAATCATCTTGG
1 GAAAGCCAAATCTGCTATGTCTTCGATTTGCTCATTGTGAACACAAAGGTGCCAAATCATCTTGG
76407530 ATCTGCTTCAGTAAAATCATCTAAAGGTTAGATCTGCCATGTATCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTAAAATCATCTAAAGGTTAGATCTGCCATGTATCTGCTCTCCGTCGAAATGGAG
*
76407595 ATGCTAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
* *
76407640 GAAAGTCAAATTTGCTATGTCTTCGATTTGCTCATTGTGAACAC-AAGGATGCCAAATCATCTTG
1 GAAAGCCAAATCTGCTATGTCTTCGATTTGCTCATTGTGAACACAAAGG-TGCCAAATCATCTTG
* *
76407704 GATCTGCTTCAGTAAAATCATC-AGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGAAATGG
65 GATCTGCTTCAGTAAAATCATCTA-AAGGTTAGATCTGCCATGTATCTGCTCTCCGTCGAAATGG
76407768 AGATGCCAGATCTGTTATCTTGGATCT
129 AGATGCCAGATCTGTTATCTTGGATCT
76407795 GCTTCAGTGT
Statistics
Matches: 146, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
174 5 0.03
175 141 0.97
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (175 bp):
GAAAGCCAAATCTGCTATGTCTTCGATTTGCTCATTGTGAACACAAAGGTGCCAAATCATCTTGG
ATCTGCTTCAGTAAAATCATCTAAAGGTTAGATCTGCCATGTATCTGCTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
Found at i:76407817 original size:86 final size:86
Alignment explanation
Indices: 76407523--76407831 Score: 233
Period size: 86 Copynumber: 3.6 Consensus size: 86
76407513 GTGCCAAATC
* * * *
76407523 ATCTTGGATCTGCTTCAGTAAAATCATCTAAAGGTTAGATCTGCCATGTATCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCGTTGA
*
76407588 AATGGAGATGCTAGATCTGTT
66 AATGGAGATGCCAGATCTGTT
* ** * * * * * *
76407609 ATCTTGGATCTACTTTGGTGTGAGAA-CATCCGAAAGTCAAATTTGCTATGTCTTCGATTTGCTC
1 ATCTTGGATCTGC-TT-CAGT-AAAATCATCTGAAGGTCAGATCTGCTATG---T--ATCTGCTC
* ** *
76407673 AT-TG-TGAACA-CAAGGATGCCAAATC----
58 -TCCGTTGAA-ATGGA-GATGCCAGATCTGTT
* *
76407698 ATCTTGGATCTGCTTCAGTAAAATCATCAGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGA
1 ATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCGTTGA
76407763 AATGGAGATGCCAGATCTGTT
66 AATGGAGATGCCAGATCTGTT
* *
76407784 ATCTTGGATCTGCTTCAGTGTAAA-CA-CGTGAAGGCCAGATCTGCTATG
1 ATCTTGGATCTGCTTCAGT-AAAATCATC-TGAAGGTCAGATCTGCTATG
76407832 CTTTGGTCAT
Statistics
Matches: 166, Mismatches: 36, Indels: 42
0.68 0.15 0.17
Matches are distributed among these distances:
81 1 0.01
82 19 0.11
83 5 0.03
84 1 0.01
85 1 0.01
86 53 0.32
87 26 0.16
88 21 0.13
89 15 0.09
91 1 0.01
92 4 0.02
93 18 0.11
94 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (86 bp):
ATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCGTTGA
AATGGAGATGCCAGATCTGTT
Found at i:76407937 original size:84 final size:86
Alignment explanation
Indices: 76407841--76408398 Score: 311
Period size: 84 Copynumber: 6.8 Consensus size: 86
76407831 GCTTTGGTCA
*
76407841 TTACCCTACTGCTTAGGGG-TTAAGGTGCATCATCTTCGATCTGCTCTGCTACTGCTTA-GG-GA
1 TTACCCTACTGCTTAGGGGATTAAGG-GCATCGTCTTCGATCTGCTCTGCTACTGCTTAGGGAGA
*
76407903 TAAGATCT-ATGAATTTAACCTG
65 TAAGATCTGA-AAATTTAACCTG
** **
76407925 TTACCCTACTGCTTAGGGGATTAA-GGC-GGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
1 TTACCCTACTGCTTAGGGGATTAAGGGCATCGTCTTCGATCTGCTCTGCTACTGCTTAGGGAGAT
76407988 AAGATCTGAAAATTTAACCTG
66 AAGATCTGAAAATTTAACCTG
* * * *
76408009 TTATCCTACTGCTTAGGGGATTAA-GGCGAGTTGTCATCGATCTGCTCTGTTACTGCTT----A-
1 TTACCCTACTGCTTAGGGGATTAAGGGC-A-TCGTCTTCGATCTGCTCTGCTACTGCTTAGGGAG
* * * * *
76408068 TTTA-ACCTG-----TTACCCTA
64 ATAAGATCTGAAAATTTAACCTG
* * ** * * * * * *
76408085 CTA-CTTAGGGGATTAAGGCGAGTCA--TCATCGATCTACTCCG--CT--ACTGCT------TAG
1 TTACCCTA-CTGCTT-AGGGGATTAAGGGCATCG-TCT--T-CGATCTGCTCTGCTACTGCTTAG
**
76408137 GGAGATAAGATCTG-----CGAACCTG
60 GGAGATAAGATCTGAAAATTTAACCTG
** * * *
76408159 TTACCCTACTATTTAGGGGATTAAGGGGA--GTCTTCGATCTGCTCCAG-TATTGCTTAGGGAGA
1 TTACCCTACTGCTTAGGGGATTAAGGGCATCGTCTTCGATCTGCT-CTGCTACTGCTTAGGGAG-
*
76408221 ATAAGATCTGCAAATTTAACCTG
64 ATAAGATCTGAAAATTTAACCTG
** * **
76408244 TTACCCTACTGCTTAGGGGATTAA-GGC-GGGTCTTTGATCTGCTCCACTACTGCTTAGGGAGAT
1 TTACCCTACTGCTTAGGGGATTAAGGGCATCGTCTTCGATCTGCTCTGCTACTGCTTAGGGAGAT
*
76408307 AAGATCTGCAAATTTAACCTG
66 AAGATCTGAAAATTTAACCTG
* ** **
76408328 TTACCCTACTGCTCAGGGGATTAA-GGC-GGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
1 TTACCCTACTGCTTAGGGGATTAAGGGCATCGTCTTCGATCTGCTCTGCTACTGCTTAGGGAGAT
76408391 AAGATCTG
66 AAGATCTG
76408399 CGAACCTGTC
Statistics
Matches: 370, Mismatches: 62, Indels: 84
0.72 0.12 0.16
Matches are distributed among these distances:
68 1 0.00
69 2 0.01
70 1 0.00
71 2 0.01
72 4 0.01
73 11 0.03
74 20 0.05
75 10 0.03
76 14 0.04
77 8 0.02
78 2 0.01
79 7 0.02
80 10 0.03
81 4 0.01
82 26 0.07
83 5 0.01
84 162 0.44
85 59 0.16
87 22 0.06
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (86 bp):
TTACCCTACTGCTTAGGGGATTAAGGGCATCGTCTTCGATCTGCTCTGCTACTGCTTAGGGAGAT
AAGATCTGAAAATTTAACCTG
Found at i:76408114 original size:68 final size:68
Alignment explanation
Indices: 76407999--76408135 Score: 211
Period size: 68 Copynumber: 2.0 Consensus size: 68
76407989 AGATCTGAAA
* * ** * * *
76407999 ATTTAACCTGTTATCCTACTGCTTAGGGGATTAAGGCGAGTTGTCATCGATCTGCTCTGTTACTG
1 ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCATCATCGATCTACTCCGCTACTG
76408064 CTT
66 CTT
76408067 ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCATCATCGATCTACTCCGCTACTG
1 ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCATCATCGATCTACTCCGCTACTG
76408132 CTT
66 CTT
76408135 A
1 A
76408136 GGGAGATAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (68 bp):
ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCATCATCGATCTACTCCGCTACTG
CTT
Found at i:76408298 original size:41 final size:41
Alignment explanation
Indices: 76408249--76408386 Score: 136
Period size: 41 Copynumber: 3.3 Consensus size: 41
76408239 ACCTGTTACC
76408249 CTACTGCTTAGGGGATTAAGGCGGGTCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGGGTCTTTGATCTGCTCCA
* **** * * *
76408290 CTACTGCTTAGGGAGA-TAAGATCTGCAAATTTAACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAG-GC-GGGTCTTTGATCTGCT-CCA
* *
76408333 CTACTGCTCAGGGGATTAAGGCGGGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGGGTCTTTGATCTGCTCCA
76408374 CTACTGCTTAGGG
1 CTACTGCTTAGGG
76408387 AGATAAGATC
Statistics
Matches: 72, Mismatches: 19, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
40 2 0.03
41 37 0.51
42 6 0.08
43 25 0.35
44 2 0.03
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (41 bp):
CTACTGCTTAGGGGATTAAGGCGGGTCTTTGATCTGCTCCA
Found at i:76408399 original size:84 final size:84
Alignment explanation
Indices: 76408067--76408399 Score: 480
Period size: 84 Copynumber: 4.0 Consensus size: 84
76408057 GTTACTGCTT
* * *
76408067 ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCATCATCGATCTACTCCGCTACTG
1 ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGGGTC-T--TCGATCTGCTCCACTACTG
76408132 CTTAGGGAGATAAGATCTGC--
63 CTTAGGGAGATAAGATCTGCAA
* * * *
76408152 ---GAACCTGTTACCCTACTATTTAGGGGATTAAGG-GGAGTCTTCGATCTGCTCCAGTATTGCT
1 ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGG-GTCTTCGATCTGCTCCACTACTGCT
76408213 TAGGGAGAATAAGATCTGCAA
65 TAGGGAG-ATAAGATCTGCAA
* *
76408234 ATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTTGATCTGCTCCACTACTGCTT
1 ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTT
76408299 AGGGAGATAAGATCTGCAA
66 AGGGAGATAAGATCTGCAA
* *
76408318 ATTTAACCTGTTACCCTACTGCTCAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTT
1 ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTT
76408383 AGGGAGATAAGATCTGC
66 AGGGAGATAAGATCTGC
76408400 GAACCTGTCA
Statistics
Matches: 225, Mismatches: 15, Indels: 17
0.88 0.06 0.07
Matches are distributed among these distances:
79 24 0.11
80 11 0.05
81 2 0.01
82 34 0.15
84 93 0.41
85 59 0.26
86 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (84 bp):
ATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTT
AGGGAGATAAGATCTGCAA
Found at i:76409458 original size:8 final size:8
Alignment explanation
Indices: 76409440--76409482 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
76409430 GGCCTCTCCA
76409440 TTTTTCT-
1 TTTTTCTC
76409447 TTTTTCTC
1 TTTTTCTC
76409455 TTTTTCTC
1 TTTTTCTC
76409463 TTTTTCT-
1 TTTTTCTC
76409470 TTTCTT-TC
1 TTT-TTCTC
76409478 TTTTT
1 TTTTT
76409483 TTTTTTACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
7 13 0.39
8 20 0.61
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTCTC
Found at i:76409466 original size:23 final size:21
Alignment explanation
Indices: 76409440--76409494 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 21
76409430 GGCCTCTCCA
76409440 TTTTTCTTTT-TTCTCTTTTTCT
1 TTTTTCTTTTCTT-TCTTTTT-T
76409462 CTTTTTCTTTTCTTTCTTTTTT
1 -TTTTTCTTTTCTTTCTTTTTT
76409484 TTTTTACTTTT
1 TTTTT-CTTTT
76409495 GAAATAGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.17
22 6 0.20
23 17 0.57
24 2 0.07
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTCTTTTCTTTCTTTTTT
Found at i:76409484 original size:17 final size:17
Alignment explanation
Indices: 76409442--76409493 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
76409432 CCTCTCCATT
*
76409442 TTTC-TTTTTTCTCTT-
1 TTTCTTTTTTTCTTTTC
*
76409457 TTTCTCTTTTTCTTTTC
1 TTTCTTTTTTTCTTTTC
76409474 TTTCTTTTTTT-TTTTAC
1 TTTCTTTTTTTCTTTT-C
76409491 TTT
1 TTT
76409494 TGAAATAGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 4 0.13
16 13 0.42
17 14 0.45
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTCTTTTTTTCTTTTC
Found at i:76409487 original size:15 final size:14
Alignment explanation
Indices: 76409440--76409488 Score: 53
Period size: 16 Copynumber: 3.2 Consensus size: 14
76409430 GGCCTCTCCA
76409440 TTTTTCTTTTTTCTCT
1 TTTTTCTTTTTT-T-T
76409456 TTTTCTCTTTTTCTTT
1 TTTT-TCTTTTT-TTT
*
76409472 TCTTTCTTTTTTTT
1 TTTTTCTTTTTTTT
76409486 TTT
1 TTT
76409489 ACTTTTGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 5 0.17
15 7 0.24
16 8 0.28
17 8 0.28
18 1 0.03
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTCTTTTTTTT
Found at i:76409839 original size:43 final size:42
Alignment explanation
Indices: 76409792--76409890 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 42
76409782 TCCCAGATGT
76409792 GGTCTTACATGTAATCAAATATCAATGCC-ACTATCCCAGACAG
1 GGTCTTACATGTAATCAAATAT-AATGCCGA-TATCCCAGACAG
* * * *
76409835 GGTCTTACATGAAATCAAATATGATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATATAATGCCGATATCCCAGACAG
*
76409877 GGTCTTACACGTAA
1 GGTCTTACATGTAA
76409891 ATCATAAGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 27 0.55
43 22 0.45
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATATAATGCCGATATCCCAGACAG
Found at i:76409893 original size:43 final size:42
Alignment explanation
Indices: 76409781--76409930 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 42
76409771 CAATGCCAAC
** * *
76409781 GTCCCAGATGTGGTCTTACATGT-AATCAAATATCAATGCCACT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATAT-GATGCCA-T
* * *
76409824 ATCCCAGACAGGGTCTTACATG-AAATCAAATATGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCC-AT
* *
76409866 GTCCCAGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAAATCA-AA-TATGATGCC-AT
*
76409910 GTCCCAGACGTGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
76409931 AAAAACACAT
Statistics
Matches: 90, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 25 0.28
43 35 0.39
44 29 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCCAT
Found at i:76419895 original size:7 final size:6
Alignment explanation
Indices: 76419876--76419905 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
76419866 TAAACTCATA
*
76419876 TTATTT TTATTT TTACTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT
76419906 ATTTTTGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:76422686 original size:24 final size:24
Alignment explanation
Indices: 76422655--76422728 Score: 85
Period size: 24 Copynumber: 3.1 Consensus size: 24
76422645 GGGTCAACAT
* *
76422655 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCAGATTTGAA
* * * *
76422679 TTGTACTATGTGTGCAAAATTGAA
1 TGGCACTATGTGTGCAGATTTGAA
*
76422703 TGGCACTATGTGTGCTGATTTGAA
1 TGGCACTATGTGTGCAGATTTGAA
76422727 TG
1 TG
76422729 TCAATACATG
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCAGATTTGAA
Found at i:76424461 original size:27 final size:27
Alignment explanation
Indices: 76424423--76424479 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
76424413 TGAGGGGAGA
76424423 AACCTATGTTTTCGTGATAAAATGCTC
1 AACCTATGTTTTCGTGATAAAATGCTC
76424450 AACCTATGTTTTCGTGATAAAATGCTC
1 AACCTATGTTTTCGTGATAAAATGCTC
76424477 AAC
1 AAC
76424480 TTGGAATGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (27 bp):
AACCTATGTTTTCGTGATAAAATGCTC
Found at i:76429612 original size:47 final size:46
Alignment explanation
Indices: 76429497--76429676 Score: 252
Period size: 46 Copynumber: 3.9 Consensus size: 46
76429487 TTCTGAAATG
* *
76429497 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* * * *
76429543 AAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGACGGGG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGA
*
76429590 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* * * *
76429636 AAACGAGTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
76429677 TCGAAGATAA
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
46 78 0.66
47 41 0.34
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
Found at i:76434524 original size:25 final size:26
Alignment explanation
Indices: 76434475--76434537 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
76434465 GATGATGACG
76434475 AAAACAATAATAATAGCAATAGTA-T
1 AAAACAATAATAATAGCAATAGTATT
*
76434500 AAAACAATAATAATA-CATATGGTATT
1 AAAACAATAATAATAGCA-ATAGTATT
*
76434526 AAAATAA-AATAA
1 AAAACAATAATAA
76434538 AAGAAACAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 2 0.06
25 25 0.74
26 7 0.21
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (26 bp):
AAAACAATAATAATAGCAATAGTATT
Found at i:76434553 original size:9 final size:9
Alignment explanation
Indices: 76434536--76434566 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
76434526 AAAATAAAAT
*
76434536 AAAAGAAAC
1 AAAACAAAC
76434545 AAAACAAAC
1 AAAACAAAC
76434554 AAAACAAAC
1 AAAACAAAC
76434563 AAAA
1 AAAA
76434567 AAATATGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.81, C:0.16, G:0.03, T:0.00
Consensus pattern (9 bp):
AAAACAAAC
Found at i:76434678 original size:31 final size:33
Alignment explanation
Indices: 76434643--76434704 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
76434633 ACATAATAGA
*
76434643 ATGTACA-AACA-ATATGATATTTACAATATAT
1 ATGTACATAACATATATGATATGTACAATATAT
* *
76434674 ATGTACATAATATATATGATATGTATAATAT
1 ATGTACATAACATATATGATATGTACAATAT
76434705 TAATATACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 7 0.27
32 3 0.12
33 16 0.62
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (33 bp):
ATGTACATAACATATATGATATGTACAATATAT
Found at i:76434778 original size:2 final size:2
Alignment explanation
Indices: 76434733--76434761 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
76434723 TATGGAGTAT
76434733 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76434762 TAGAAGGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76437183 original size:28 final size:28
Alignment explanation
Indices: 76437151--76437249 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
76437141 TGCATAAGCC
*
76437151 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
76437179 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
76437207 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
76437236 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76437250 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:76444839 original size:28 final size:28
Alignment explanation
Indices: 76444807--76444905 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
76444797 GCCATAAGCC
*
76444807 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
76444835 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
76444863 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
76444892 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76444906 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:76446698 original size:22 final size:23
Alignment explanation
Indices: 76446673--76446736 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
76446663 ATTTTTTGGG
*
76446673 TTGGGTTA-GTGTTTTGGGTAAA
1 TTGGGTTAGGGGTTTTGGGTAAA
*
76446695 TTGGGTTAGGGGTTTTGGATAAA
1 TTGGGTTAGGGGTTTTGGGTAAA
*
76446718 TTAGGTTAGGGGTTTTGGG
1 TTGGGTTAGGGGTTTTGGG
76446737 CCGAAAATTG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 8 0.22
23 29 0.78
ACGTcount: A:0.17, C:0.00, G:0.41, T:0.42
Consensus pattern (23 bp):
TTGGGTTAGGGGTTTTGGGTAAA
Found at i:76447370 original size:43 final size:42
Alignment explanation
Indices: 76447321--76447475 Score: 134
Period size: 44 Copynumber: 3.6 Consensus size: 42
76447311 TTTCAGCCTA
* *
76447321 TTACCCTACTACTTAGGGGGTTAAGGTCTGTAAATTTGGCTTG
1 TTACCCTACTACTTAGGGGGTTAAGATCT-TAAATTTAGCTTG
* * * *
76447364 TTACCCTACTGCTTAGGGGGTTAAAGCTCATT--ATCTTCGATCTG
1 TTACCCTACTACTTAGGGGGTT-AAGATC-TTAAAT-TTAGCT-TG
* * * *
76447408 TTTCCCTACTACTTAGGGTGATAAGATCTATGAACTTTAGCTTG
1 TTACCCTACTACTTAGGGGGTTAAGATCT-T-AAATTTAGCTTG
*
76447452 TTACCCTACTGCTTAGGGGGTTAA
1 TTACCCTACTACTTAGGGGGTTAA
76447476 AGCTCGTTGC
Statistics
Matches: 88, Mismatches: 16, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
42 3 0.03
43 31 0.35
44 48 0.55
45 5 0.06
46 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (42 bp):
TTACCCTACTACTTAGGGGGTTAAGATCTTAAATTTAGCTTG
Found at i:76447424 original size:44 final size:44
Alignment explanation
Indices: 76447362--76447602 Score: 191
Period size: 44 Copynumber: 5.5 Consensus size: 44
76447352 AAATTTGGCT
*
76447362 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATC
* * * * * * * * *
76447406 TGTTTCCCTACTACTTAGGGTGAT-AAGATCTATGAACTT-TAGC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTC-ATTACCTTCGATC
* *
76447449 TTGTTACCCTACTGCTTAGGGGGTTAAAGCTCGTTGCCTTCGATC
1 -TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATC
* * * * * *
76447494 TGTTTCCCTACTACTTAGGGGGTTAAGGTTCATTATTCTTC-AGCC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTA-CCTTCGA-TC
* * * ** * *
76447539 TGTTACCCTACTGTTTAGGGGTTTAAGGCTTGTCACCTTTGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATC
*
76447583 TGTTTCCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGG
76447603 TAATAAGATC
Statistics
Matches: 149, Mismatches: 41, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
43 7 0.05
44 102 0.68
45 40 0.27
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (44 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATC
Found at i:76447461 original size:88 final size:87
Alignment explanation
Indices: 76447324--76447657 Score: 364
Period size: 89 Copynumber: 3.8 Consensus size: 87
76447314 CAGCCTATTA
* * * * *
76447324 CCCTACTACTTAGGGGGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAA
1 CCCTACTACTTAGGGGGATAAGATCTATAACTTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAA
* *
76447389 GCTCATTATCTTCGATCTGTTT
66 GCTCGTTACCTTCGATCTGTTT
*
76447411 CCCTACTACTTAGGGTGATAAGATCTATGAACTTTAGCTTGTTACCCTACTGCTTAGGGGGTTAA
1 CCCTACTACTTAGGGGGATAAGATCTAT-AACTTTAGCTTGTTACCCTACTGCTTAGGGGGTTAA
*
76447476 AGCTCGTTGCCTTCGATCTGTTT
65 AGCTCGTTACCTTCGATCTGTTT
* * * * * * *
76447499 CCCTACTACTTAGGGGGTTAAGGT-TCATTATTCTTCAGCCTGTTACCCTACTGTTTAGGGGTTT
1 CCCTACTACTTAGGGGGATAAGATCT-A-TA-ACTTTAGCTTGTTACCCTACTGCTTAGGGGGTT
* * * *
76447563 AAGGCTTGTCACCTTTGATCTGTTT
63 AAAGCTCGTTACCTTCGATCTGTTT
* ** * * * *
76447588 CCCTACTGCTTAGGGTAATAAGATCTGTAAATCCTTAACTTGTTACCCTACTGCTTAGGGAGTTA
1 CCCTACTACTTAGGGGGATAAGATCTAT-AA-CTTTAGCTTGTTACCCTACTGCTTAGGGGGTTA
76447653 AAGCT
64 AAGCT
76447658 TGGTGGTTTG
Statistics
Matches: 203, Mismatches: 37, Indels: 12
0.81 0.15 0.05
Matches are distributed among these distances:
87 25 0.12
88 78 0.38
89 99 0.49
90 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (87 bp):
CCCTACTACTTAGGGGGATAAGATCTATAACTTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAA
GCTCGTTACCTTCGATCTGTTT
Found at i:76456318 original size:40 final size:40
Alignment explanation
Indices: 76456260--76456419 Score: 162
Period size: 40 Copynumber: 4.0 Consensus size: 40
76456250 TGAATGATAC
* * *
76456260 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
76456300 CCGGGCTAAGACCTGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
76456340 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTCACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
76456380 CCGAGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
76456420 TCGGTTAAAT
Statistics
Matches: 98, Mismatches: 18, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 90 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:76456417 original size:80 final size:80
Alignment explanation
Indices: 76456260--76456437 Score: 182
Period size: 80 Copynumber: 2.2 Consensus size: 80
76456250 TGAATGATAC
* * * * * * * * *
76456260 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCTGAAGGCATTCG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTCACTAAATCCGAGCTAAGACCCGAAGGCATTCG
*
76456325 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* *
76456340 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTCACTAAATCCGAGTTAAGACCCGAAGGCAATT-
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTCACTAAATCCGAGCTAAGACCCGAAGGC-ATTC
**
76456404 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
*
76456420 TC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
76456438 TACGTGACTC
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 63 0.78
81 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTCACTAAATCCGAGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:76459297 original size:9 final size:9
Alignment explanation
Indices: 76459279--76459308 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
76459269 TGCAATGCTG
76459279 ATGC-ATGA
1 ATGCGATGA
76459287 ATGCGATGA
1 ATGCGATGA
76459296 ATGCGATGA
1 ATGCGATGA
76459305 ATGC
1 ATGC
76459309 AAAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.23
Consensus pattern (9 bp):
ATGCGATGA
Found at i:76463191 original size:25 final size:26
Alignment explanation
Indices: 76463142--76463201 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 26
76463132 GATGATGACG
76463142 AAAACAATAATAATAGCAATAGTA-T
1 AAAACAATAATAATAGCAATAGTATT
*
76463167 AAAACAATAATAATA-CATATGGTATT
1 AAAACAATAATAATAGCA-ATAGTATT
*
76463193 AAAATAATA
1 AAAACAATA
76463202 GAAACAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 2 0.06
25 20 0.65
26 9 0.29
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (26 bp):
AAAACAATAATAATAGCAATAGTATT
Found at i:76463217 original size:9 final size:9
Alignment explanation
Indices: 76463203--76463228 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
76463193 AAAATAATAG
76463203 AAACAAAAC
1 AAACAAAAC
76463212 AAACAAAAC
1 AAACAAAAC
76463221 AAACAAAA
1 AAACAAAA
76463229 AAATATGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (9 bp):
AAACAAAAC
Found at i:76463341 original size:31 final size:33
Alignment explanation
Indices: 76463306--76463367 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
76463296 ACATAATAGA
*
76463306 ATGTACA-AACA-ATATGATATTTACAATATAT
1 ATGTACATAACATATATGATATGTACAATATAT
* *
76463337 ATGTACATAATATATATGATATGTATAATAT
1 ATGTACATAACATATATGATATGTACAATAT
76463368 TAATATACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 7 0.27
32 3 0.12
33 16 0.62
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (33 bp):
ATGTACATAACATATATGATATGTACAATATAT
Found at i:76463441 original size:2 final size:2
Alignment explanation
Indices: 76463396--76463424 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
76463386 TATGGAGTAT
76463396 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76463425 TAGAAGGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76464845 original size:22 final size:23
Alignment explanation
Indices: 76464820--76464883 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
76464810 TTTTTTTGGG
*
76464820 TTGGGTTA-GTGTTTTGGGTAAA
1 TTGGGTTAGGGGTTTTGGGTAAA
*
76464842 TTGGGTTAGGGGTTTTGGATAAA
1 TTGGGTTAGGGGTTTTGGGTAAA
76464865 TTGGGTTAGGGGTTTTGGG
1 TTGGGTTAGGGGTTTTGGG
76464884 CTCAAAATTG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
22 8 0.21
23 30 0.79
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (23 bp):
TTGGGTTAGGGGTTTTGGGTAAA
Found at i:76467882 original size:9 final size:9
Alignment explanation
Indices: 76467868--76467897 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
76467858 CAGAAATTCA
76467868 AAAAAAAAG
1 AAAAAAAAG
76467877 AAAAAAAAG
1 AAAAAAAAG
76467886 -AAAAAAAG
1 AAAAAAAAG
76467894 AAAA
1 AAAA
76467898 GAAACTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:76480253 original size:19 final size:20
Alignment explanation
Indices: 76480210--76480251 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 20
76480200 TGCTACGAGG
76480210 AACTCAAAAGTGGCCATACAA
1 AACTCAAAAGTGGCCATA-AA
76480231 AACTCAAAAGTGGCCATAAA
1 AACTCAAAAGTGGCCATAAA
76480251 A
1 A
76480252 CTACACATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.50, C:0.21, G:0.14, T:0.14
Consensus pattern (20 bp):
AACTCAAAAGTGGCCATAAA
Found at i:76486019 original size:41 final size:40
Alignment explanation
Indices: 76485962--76486181 Score: 228
Period size: 40 Copynumber: 5.5 Consensus size: 40
76485952 TCGAATGGTG
* * * *
76485962 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAA
*
76486003 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
76486043 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
76486083 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAATCACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AA
* * * * * * * * *
76486124 -CCGGGCTACGTCCCAAAGACAATCGAGCGAGTCGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
76486163 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
76486182 TACGTGATTC
Statistics
Matches: 149, Mismatches: 28, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
39 11 0.07
40 109 0.73
41 29 0.19
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
Found at i:76486097 original size:80 final size:80
Alignment explanation
Indices: 76485963--76486181 Score: 260
Period size: 80 Copynumber: 2.7 Consensus size: 80
76485953 CGAATGGTGT
* * * *
76485963 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
76486028 GTGCGAGTTACTAAAA
65 GTGCGAATCACTAAAA
* *
76486044 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGTATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
*
76486109 TGCGAATCACTATAA
66 TGCGAATCACTAAAA
* * * * * * * * *
76486124 CCGGGCTACGTCCCAAAGACAATCGAGCGAGTCGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGG
76486182 TACGTGATTC
Statistics
Matches: 119, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
79 14 0.12
80 80 0.67
81 25 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATCACTAAAA
Found at i:76488693 original size:17 final size:18
Alignment explanation
Indices: 76488661--76488697 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
76488651 CGTACATGAG
*
76488661 AGAAACAAAAACAAAGAA
1 AGAAACAAAAAAAAAGAA
76488679 AGAAA-AAAAAAAAAGAA
1 AGAAACAAAAAAAAAGAA
76488696 AG
1 AG
76488698 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAACAAAAAAAAAGAA
Found at i:76488705 original size:17 final size:18
Alignment explanation
Indices: 76488661--76488697 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
76488651 CGTACATGAG
*
76488661 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAACAAAGAA
76488679 AGAAAAAAAAA-AAAGAA
1 AGAAAAAAAAACAAAGAA
76488696 AG
1 AG
76488698 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAACAAAGAA
Found at i:76489995 original size:40 final size:40
Alignment explanation
Indices: 76489936--76490042 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
76489926 CAATTGAATG
* * * *
76489936 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
76489976 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
76490016 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
76490043 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:76490102 original size:40 final size:40
Alignment explanation
Indices: 76489978--76490103 Score: 150
Period size: 40 Copynumber: 3.1 Consensus size: 40
76489968 TGGAAATTAT
* **
76489978 ATCCGGGTTAAGACCCGAAGGCAATT-GTGC-TAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGGTTAC
* *
76490018 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT-C
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAC
*
76490057 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTAC
1 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAC
76490098 ATCCGG
1 ATCCGG
76490104 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
39 4 0.05
40 69 0.93
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAC
Found at i:76497335 original size:40 final size:40
Alignment explanation
Indices: 76497246--76497424 Score: 241
Period size: 40 Copynumber: 4.5 Consensus size: 40
76497236 CGAATGGTGT
* * * * *
76497246 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAA
*
76497287 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAA
* *
76497327 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAA
* *
76497367 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAA
* *
76497407 CCGGGCTACGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
76497425 ACAATCGAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 98 0.79
41 26 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAA
Found at i:76497380 original size:80 final size:80
Alignment explanation
Indices: 76497246--76497464 Score: 278
Period size: 80 Copynumber: 2.7 Consensus size: 80
76497236 CGAATGGTGT
* * * *
76497246 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
76497311 GTGCGAGTTACTAAAA
65 GTGCGAATCACTAAAA
*
76497327 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
*
76497392 TGCGAATCACTATAA
66 TGCGAATCACTAAAA
* * * * * * * *
76497407 CCGGGCTACGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGG
76497465 TACGTGATTC
Statistics
Matches: 121, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
79 14 0.12
80 82 0.68
81 25 0.21
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATCACTAAAA
Found at i:76497445 original size:40 final size:40
Alignment explanation
Indices: 76497246--76497464 Score: 219
Period size: 40 Copynumber: 5.5 Consensus size: 40
76497236 CGAATGGTGT
* * * * *
76497246 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTA-AA
1 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTCACTATAA
* * *
76497286 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
1 -CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
76497327 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTA-AA
1 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
* *
76497366 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATCACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
* * * * * * *
76497407 CCGGGCTACGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
* *
76497447 CC-GGTTAAATTCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
76497465 TACGTGATTC
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 13 0.08
40 110 0.72
41 30 0.20
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
Found at i:76514091 original size:12 final size:13
Alignment explanation
Indices: 76514064--76514092 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
76514054 AATTTAATAA
76514064 ATATATTTGTTAT
1 ATATATTTGTTAT
76514077 ATATATTTG-TAT
1 ATATATTTGTTAT
76514089 ATAT
1 ATAT
76514093 TTGCGTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (13 bp):
ATATATTTGTTAT
Found at i:76514211 original size:18 final size:18
Alignment explanation
Indices: 76514188--76514225 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
76514178 TATTTACTGC
76514188 ATGTTATTTTCAAACACT
1 ATGTTATTTTCAAACACT
76514206 ATGTTATTTTCAAACACT
1 ATGTTATTTTCAAACACT
76514224 AT
1 AT
76514226 CTTTGTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.05, T:0.45
Consensus pattern (18 bp):
ATGTTATTTTCAAACACT
Found at i:76514345 original size:7 final size:7
Alignment explanation
Indices: 76514333--76514363 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
76514323 TAATTTGGAA
76514333 AATATTT
1 AATATTT
76514340 AATATTT
1 AATATTT
76514347 AATATTT
1 AATATTT
76514354 AATATTT
1 AATATTT
76514361 AAT
1 AAT
76514364 GTTAAAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
AATATTT
Found at i:76515305 original size:14 final size:14
Alignment explanation
Indices: 76515288--76515318 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
76515278 GGTAAAATAT
76515288 TTTCTGAAAAATGA
1 TTTCTGAAAAATGA
*
76515302 TTTCTGGAAAATGA
1 TTTCTGAAAAATGA
76515316 TTT
1 TTT
76515319 ACTTTTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.42
Consensus pattern (14 bp):
TTTCTGAAAAATGA
Found at i:76515445 original size:18 final size:18
Alignment explanation
Indices: 76515419--76515461 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
76515409 AAAAATTATT
*
76515419 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
76515437 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
76515455 TTTATAT
1 TTTATAT
76515462 TTTAAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:76515503 original size:35 final size:35
Alignment explanation
Indices: 76515437--76515503 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
76515427 TATTAATAAA
* *
76515437 TTTATATATATTAATAAATTTATATTTTAAATTAT
1 TTTACATATATTAATAAATTTATATTATAAATTAT
76515472 TTTACATATATT-ATAATGATTTAT-TTATAAAT
1 TTTACATATATTAATAA--ATTTATATTATAAAT
76515504 AAATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 4 0.14
35 18 0.64
36 6 0.21
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (35 bp):
TTTACATATATTAATAAATTTATATTATAAATTAT
Found at i:76515670 original size:25 final size:25
Alignment explanation
Indices: 76515642--76515720 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
76515632 TAATATTAAA
76515642 AATTAATAATATTATCCAAATGCAT
1 AATTAATAATATTATCCAAATGCAT
* * *
76515667 AATTAGTAGTA-TA-CCACATG-AT
1 AATTAATAATATTATCCAAATGCAT
* * * *
76515689 AA-CAATAACATTGTCCAAGTGCAT
1 AATTAATAATATTATCCAAATGCAT
76515713 AATTAATA
1 AATTAATA
76515721 TTATACCACA
Statistics
Matches: 39, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
21 4 0.10
22 5 0.13
23 11 0.28
24 6 0.15
25 13 0.33
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.32
Consensus pattern (25 bp):
AATTAATAATATTATCCAAATGCAT
Found at i:76518309 original size:19 final size:19
Alignment explanation
Indices: 76518287--76518342 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
76518277 GGGAATGGAG
76518287 TTAACTAACCAACCCCAAC
1 TTAACTAACCAACCCCAAC
* *
76518306 TTAAATAA-TAA---CAA-
1 TTAACTAACCAACCCCAAC
76518320 TTAACTAACCAACCCCAAC
1 TTAACTAACCAACCCCAAC
76518339 TTAA
1 TTAA
76518343 ATAATAACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
14 7 0.25
15 5 0.18
18 5 0.18
19 11 0.39
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.21
Consensus pattern (19 bp):
TTAACTAACCAACCCCAAC
Found at i:76518326 original size:33 final size:33
Alignment explanation
Indices: 76518287--76518352 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
76518277 GGGAATGGAG
76518287 TTAACTAACCAACCCCAACTTAAATAATAACAA
1 TTAACTAACCAACCCCAACTTAAATAATAACAA
76518320 TTAACTAACCAACCCCAACTTAAATAATAACAA
1 TTAACTAACCAACCCCAACTTAAATAATAACAA
76518353 AAAAAAGGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (33 bp):
TTAACTAACCAACCCCAACTTAAATAATAACAA
Found at i:76521225 original size:38 final size:38
Alignment explanation
Indices: 76521173--76521412 Score: 228
Period size: 38 Copynumber: 5.8 Consensus size: 38
76521163 TTAACATGTA
*
76521173 TAACCGTGGCATATCCACTTAGCACCACGTTACATATT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATATT
* *
76521211 TAATCGTGGTATATCCACTTAGCACCACGTTACATGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATATT
*
76521249 TAACCGTGGTATATCCACTTAACACCACGTTAATGAATCAATATAT
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-C-ATAT-T
*
76521295 GTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGT
1 -TAACCGTGGTATATCCACTTAGCACCACG-----T-TA-C-ATAT-T
* * *
76521343 GTAATCGTGGTATATCCACTTAGCACCACGTTACACATA
1 -TAACCGTGGTATATCCACTTAGCACCACGTTACATATT
*
76521382 TAACCGTGGTATATCCACTTAGCATCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
76521413 TTTCCATTCC
Statistics
Matches: 172, Mismatches: 17, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
38 91 0.53
39 1 0.01
40 3 0.02
41 2 0.01
42 2 0.01
43 2 0.01
44 1 0.01
45 3 0.02
46 1 0.01
47 27 0.16
48 37 0.22
50 1 0.01
51 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (38 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATATT
Found at i:76521358 original size:48 final size:48
Alignment explanation
Indices: 76521244--76521377 Score: 207
Period size: 48 Copynumber: 2.8 Consensus size: 48
76521234 ACCACGTTAC
* *
76521244 ATGTTTAACCGTGGTATATCCACTTAACACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
* * *
76521291 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
*
76521339 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACA
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACA
76521378 CATATAACCG
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 33 0.42
48 45 0.58
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
Found at i:76525607 original size:24 final size:25
Alignment explanation
Indices: 76525565--76525613 Score: 91
Period size: 24 Copynumber: 2.0 Consensus size: 25
76525555 CCTGAACACA
76525565 GAAAACGGTAAAAAAAATAGATTCT
1 GAAAACGGTAAAAAAAATAGATTCT
76525590 GAAAACGGT-AAAAAAATAGATTCT
1 GAAAACGGTAAAAAAAATAGATTCT
76525614 TTCTCTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.55, C:0.08, G:0.16, T:0.20
Consensus pattern (25 bp):
GAAAACGGTAAAAAAAATAGATTCT
Found at i:76528968 original size:17 final size:17
Alignment explanation
Indices: 76528933--76528964 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76528923 TTTATTAATT
76528933 AATTTAATTAATTTTTC
1 AATTTAATTAATTTTTC
76528950 AATTTAA-TAATTTTT
1 AATTTAATTAATTTTT
76528965 TCAACTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTTAATTAATTTTTC
Found at i:76532854 original size:48 final size:47
Alignment explanation
Indices: 76532527--76532893 Score: 226
Period size: 46 Copynumber: 7.8 Consensus size: 47
76532517 CATAGGGTGT
* * **
76532527 AATGCCGATGCCATGTCCCAGACATGGTTTTACACTGACTATCAAAATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTC--TCTC
* * * * * *
76532576 TAGGCCGACGCCATATCCCAGACATGGTCTTACACT-AGCTTTTACATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-C-TCT-C-TCTC
** * * * *
76532626 CGTGCCGATGCCATGTTCCGGACATGGTCTTACATTGACAC-CTCT-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTCTC
* * *
76532671 ATACGTGCCGATGCCATGTTCCGGACATGGTCTTACACTGACACATCTCGT-
1 A-A--TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCTC-TC
* *
76532722 -A-GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-C-TCTC
* * * *
76532766 GAGGCCAATG-CATGTCCTAGACAT-GTCTTACACT-AGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTC-TCTC
*
76532812 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTC-AT-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTCTC
76532857 AATGTGGCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 AA--T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
76532894 AGCGCACAAA
Statistics
Matches: 259, Mismatches: 36, Indels: 49
0.75 0.10 0.14
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 14 0.05
45 14 0.05
46 62 0.24
47 30 0.12
48 61 0.24
49 34 0.13
50 38 0.15
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTCTC
Found at i:76532871 original size:94 final size:96
Alignment explanation
Indices: 76532527--76532896 Score: 334
Period size: 94 Copynumber: 3.9 Consensus size: 96
76532517 CATAGGGTGT
* * * * * *
76532527 AATGCCGATGCCATGTCCCAGACATGGTTTTACACTGACTATCAAAATCTAGGCCGACGCCATAT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGT-GGCCGATGCCATGT
* *
76532592 CCCAGACATGGTCTTACACTAGCTTTTACATATC
65 CCCAGACATGGTCTTACACTAGC-TCT-CATCTC
** * * * * *
76532626 CGTGCCGATGCCATGTTCCGGACATGGTCTTACATTGACACCTC-TATACGT-GCCGATGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TCTCATA-ATGTGGCCGATGCCATG
* * * *
76532689 TTCCGGACATGGTCTTACACT-G-ACACATCTC
64 TCCCAGACATGGTCTTACACTAGCTCTCATCTC
* * * * * *
76532720 -GTAGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCCAATG-CAT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CATAAT-GTGGCCGATGCCAT
* *
76532779 GTCCTAGACAT-GTCTTACACTAGCTCTCGTCTC
63 GTCCCAGACATGGTCTTACACTAGCTCTCATCTC
76532812 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATG-CATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCCATGTC
76532876 CCAGACAT-GTCTTACACTAGC
66 CCAGACATGGTCTTACACTAGC
76532897 GCACAAATGA
Statistics
Matches: 215, Mismatches: 42, Indels: 33
0.74 0.14 0.11
Matches are distributed among these distances:
90 11 0.05
91 14 0.07
92 31 0.14
93 27 0.13
94 62 0.29
95 2 0.01
97 1 0.00
98 29 0.13
99 34 0.16
100 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (96 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCCATGTC
CCAGACATGGTCTTACACTAGCTCTCATCTC
Found at i:76536924 original size:21 final size:21
Alignment explanation
Indices: 76536900--76536966 Score: 55
Period size: 21 Copynumber: 3.0 Consensus size: 21
76536890 CTAGGAACTA
76536900 TGTGATCTGAACTCATTGAGT
1 TGTGATCTGAACTCATTGAGT
* ** *
76536921 TGTGGTCTGAGTTCA-TGACAT
1 TGTGATCTGAACTCATTGA-GT
76536942 ATGTGGCATCTGAACTCATTGAGT
1 -TGT-G-ATCTGAACTCATTGAGT
76536966 T
1 T
76536967 ATGGTTTGAG
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
20 3 0.09
21 13 0.39
22 3 0.09
23 2 0.06
24 9 0.27
25 3 0.09
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.37
Consensus pattern (21 bp):
TGTGATCTGAACTCATTGAGT
Found at i:76540975 original size:44 final size:44
Alignment explanation
Indices: 76540912--76541008 Score: 176
Period size: 44 Copynumber: 2.2 Consensus size: 44
76540902 GTATTATATC
*
76540912 GGGATTACCCGTCCAAGCTAAATCCTTTCTATAACAAGGTCAAT
1 GGGATTACTCGTCCAAGCTAAATCCTTTCTATAACAAGGTCAAT
*
76540956 GGGATTACTCGTTCAAGCTAAATCCTTTCTATAACAAGGTCAAT
1 GGGATTACTCGTCCAAGCTAAATCCTTTCTATAACAAGGTCAAT
76541000 GGGATTACT
1 GGGATTACT
76541009 TCATGCAATC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (44 bp):
GGGATTACTCGTCCAAGCTAAATCCTTTCTATAACAAGGTCAAT
Found at i:76544750 original size:30 final size:30
Alignment explanation
Indices: 76544714--76544782 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
76544704 TGTTACCAGA
76544714 CCGTGTGTCGCACACGGTCTGGACACACGC
1 CCGTGTGTCGCACACGGTCTGGACACACGC
*
76544744 CCGTGTGTCGCACACGGTCTGGATACACGC
1 CCGTGTGTCGCACACGGTCTGGACACACGC
76544774 CCGTGTGTC
1 CCGTGTGTC
76544783 TACCTGTGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.14, C:0.35, G:0.30, T:0.20
Consensus pattern (30 bp):
CCGTGTGTCGCACACGGTCTGGACACACGC
Found at i:76547492 original size:55 final size:54
Alignment explanation
Indices: 76547405--76547657 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 54
76547395 ATTAGGGTTT
* * *
76547405 AAGGATACCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGA
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTATAAGGA
* * * *
76547460 AAGGAAATCATGTAAGACCATGTCAATACATGGC-ATTGATAAGTTACTATAAGGCA
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TATAAGG-A
** * * * * *
76547516 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAGTTCATAAAGT
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGA
* * *
76547568 AAGGACACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAG-TT-TCA--A
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGA
* *
76547617 AAGGAAACCATGTAAGACCATGACAAGTCATGGCAA-TGGTA
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTA
76547658 GGGTACCCGT
Statistics
Matches: 164, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
49 38 0.23
51 2 0.01
52 5 0.03
53 39 0.24
54 8 0.05
55 67 0.41
56 5 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGAAACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGA
Found at i:76547611 original size:108 final size:103
Alignment explanation
Indices: 76547405--76547657 Score: 292
Period size: 108 Copynumber: 2.4 Consensus size: 103
76547395 ATTAGGGTTT
* * * * *
76547405 AAGGATACCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGAAAGGAAATCA
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAAGGTTCATAAAGAAAGGAAACCA
* * *
76547470 TGTAAGACCATGTCAATACATGGCATTGATAAGTTACTAT
65 TGTAAGACCATGTCAAGACATGGCAATGATAAGTTAC-AA
* * *
76547510 AAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA-GTTCATAAAGTAAGGAC
1 AAGG-AAA----CCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGGTTCATAAAGAAAGGAA
* *
76547574 ACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCAA
61 ACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTACAA
* * *
76547617 AAGGAAACCATGTAAGACCATGACAAGTCATGGCAATGGTA
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTA
76547658 GGGTACCCGT
Statistics
Matches: 126, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
102 30 0.24
105 4 0.03
106 5 0.04
107 5 0.04
108 49 0.39
109 7 0.06
110 26 0.21
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (103 bp):
AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGGTTCATAAAGAAAGGAAACCAT
GTAAGACCATGTCAAGACATGGCAATGATAAGTTACAA
Found at i:76547754 original size:23 final size:24
Alignment explanation
Indices: 76547728--76547772 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
76547718 AAGGTAAGGT
*
76547728 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
76547751 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
76547773 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:76549296 original size:20 final size:20
Alignment explanation
Indices: 76549267--76549311 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
76549257 AGCACATGTA
* *
76549267 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
76549287 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
76549307 TTCAT
1 TTCAT
76549312 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:76554742 original size:53 final size:54
Alignment explanation
Indices: 76554674--76554880 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
76554664 TTCCTTTTTA
* * *
76554674 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
76554727 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
76554781 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
76554836 AACTTACCAATGTCATGCCTAGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
76554881 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 46 0.38
54 36 0.30
55 39 0.32
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:76558683 original size:79 final size:82
Alignment explanation
Indices: 76558572--76558756 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 82
76558562 GCTACTCGTT
* *
76558572 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTA-ACTCGCATAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACATAGCCCGGAATATAGTATA-TCGCACAAATGCCTTC-GGATCTTAACC
* *
76558634 CGGATTTAGTAAC-TCGCA
64 CGGATATAGTAACTTAGCA
* ** *
76558652 CAAATGCCTTCGGG-CCTAGCCCGGAAT-TAGTATATCGCACAAATGCCTTCGGATCTTAGTCTG
1 CAAATGCCTTCGGGACATAGCCCGGAATATAGTATATCGCACAAATGCCTTCGGATCTTAACCCG
*
76558715 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
76558732 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
76558757 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACATAGCCCGGAATATAGTATATCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Done.