Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 247 of 438
Found at i:76558690 original size:39 final size:40
Alignment explanation
Indices: 76558572--76558756 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
76558562 GCTACTCGTT
76558572 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
* * *
76558612 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* *
76558652 CAAATGCCTTCGGG-CCTAGCCCGGAATTAGTATA-TCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTA-ACTCGCA
* * * * * *
76558691 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAAC-TCGCA
*
76558732 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
76558757 CATCATTCGA
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 75 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
Found at i:76561927 original size:46 final size:47
Alignment explanation
Indices: 76561799--76561927 Score: 192
Period size: 46 Copynumber: 2.8 Consensus size: 47
76561789 TATAACCCGC
* * * *
76561799 CCATAAATGAACTCGGACTCAACTCAATGAGCTCGG-GATTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGATTCTGCAT
76561845 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCT-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GATTCTGCAT
76561891 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76561928 TGCCTAGTTA
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
46 73 0.95
47 3 0.04
48 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGATTCTGCAT
Found at i:76566839 original size:28 final size:27
Alignment explanation
Indices: 76566794--76566899 Score: 94
Period size: 28 Copynumber: 3.9 Consensus size: 27
76566784 CATTAAGCAT
76566794 AAAGTGCAAAT-A--ACGATAAGCACC
1 AAAGTGCAAATAATTACGATAAGCACC
*
76566818 AAAGTGCAAAATAATTACGATAAGTACC
1 AAAGTGC-AAATAATTACGATAAGCACC
* *
76566846 AAAGTGCATAT-TTTACAATGATAAGCACC
1 AAAGTGCAAATAATTAC---GATAAGCACC
* *
76566875 GAAGTGTGAAATAATTACGATAAGC
1 AAAGTG-CAAATAATTACGATAAGC
76566900 GCGCTAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
24 7 0.11
25 4 0.06
26 5 0.08
27 3 0.05
28 25 0.38
29 14 0.22
30 3 0.05
31 4 0.06
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (27 bp):
AAAGTGCAAATAATTACGATAAGCACC
Found at i:76567327 original size:17 final size:17
Alignment explanation
Indices: 76567307--76567339 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76567297 TAGTAATTAA
76567307 ATTACTTAATTAACATC
1 ATTACTTAATTAACATC
*
76567324 ATTATTTAATTAACAT
1 ATTACTTAATTAACAT
76567340 AACTTAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTACTTAATTAACATC
Found at i:76574058 original size:34 final size:34
Alignment explanation
Indices: 76574017--76574095 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
76574007 TAACCCATTT
* *
76574017 CAATAACAGTAGCAGTCTGAGCCTAATCCCACTA
1 CAATAACAGTAGAAGTCTGAGCCTAAGCCCACTA
* * * * *
76574051 CAGTAACAGTAGAAGTTTGGGCCTGAGCCCATTA
1 CAATAACAGTAGAAGTCTGAGCCTAAGCCCACTA
76574085 CAATAACAGTA
1 CAATAACAGTA
76574096 TACAAACAGA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (34 bp):
CAATAACAGTAGAAGTCTGAGCCTAAGCCCACTA
Found at i:76584095 original size:24 final size:27
Alignment explanation
Indices: 76584063--76584120 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 27
76584053 TCATTAGGAA
76584063 CAAAGTGC-AAAT-A-ACGATAAGCAC
1 CAAAGTGCAAAATAATACGATAAGCAC
76584087 CAAAGTGCAAAATAATTACGATAAGCAC
1 CAAAGTGCAAAATAA-TACGATAAGCAC
76584115 CAAAGT
1 CAAAGT
76584121 ACTTATTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.27
25 4 0.13
26 1 0.03
28 17 0.57
ACGTcount: A:0.50, C:0.19, G:0.16, T:0.16
Consensus pattern (27 bp):
CAAAGTGCAAAATAATACGATAAGCAC
Found at i:76589174 original size:25 final size:26
Alignment explanation
Indices: 76589146--76589205 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
76589136 CTGGAGGCCT
76589146 AGCCTCTTTT-AAT-AACTGGGGCAAA
1 AGCC-CTTTTCAATAAACTGGGGCAAA
** *
76589171 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCAAA
76589197 AGCCCTTTT
1 AGCCCTTTT
76589206 GCACTTCCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.17
25 5 0.17
26 20 0.67
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCAAA
Found at i:76592214 original size:46 final size:50
Alignment explanation
Indices: 76592164--76592276 Score: 135
Period size: 53 Copynumber: 2.3 Consensus size: 50
76592154 TAGCCCTACC
* * *
76592164 ATGGTCTTACACGG-ATCACA-TA-ACAT-ACCGATGCCATATCCCAGAT
1 ATGGTCTTATACGGAATCACATTACACATCACCGATGCCAAAGCCCAGAT
*
76592210 ATGGTCTTATACGGAATCACATTATCACATCACACCGATGCCAAAGCCCAGCT
1 ATGGTCTTATACGGAATCACATTA-CACAT--CACCGATGCCAAAGCCCAGAT
76592263 ATGGTCTTATACGG
1 ATGGTCTTATACGG
76592277 GAACTCGAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
46 13 0.23
47 6 0.11
48 2 0.04
50 4 0.07
53 31 0.55
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
ATGGTCTTATACGGAATCACATTACACATCACCGATGCCAAAGCCCAGAT
Found at i:76592341 original size:52 final size:51
Alignment explanation
Indices: 76592194--76592344 Score: 146
Period size: 52 Copynumber: 2.9 Consensus size: 51
76592184 TAACATACCG
* *
76592194 ATGCCATATCCCAGA-TATGGTCTTATACGGAATCACATTATCACATCACACCG
1 ATGCCATAGCCCA-ACTATGGTCTTATACGGAAT-ACA-TATCACATCACACCA
* * ****
76592247 ATGCCAAAGCCCAGCTATGGTCTTATACGGGAACT-CGA-ATCACATTGTTCCA
1 ATGCCATAGCCCAACTATGGTCTTATAC-GGAA-TAC-ATATCACATCACACCA
76592299 ATGCCATAGCCCAACTATGGTCTTATACGGAAGTACATATCACATC
1 ATGCCATAGCCCAACTATGGTCTTATACGGAA-TACATATCACATC
76592345 TTTTTCGTCA
Statistics
Matches: 80, Mismatches: 12, Indels: 13
0.76 0.11 0.12
Matches are distributed among these distances:
51 6 0.08
52 43 0.54
53 25 0.31
54 5 0.06
55 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (51 bp):
ATGCCATAGCCCAACTATGGTCTTATACGGAATACATATCACATCACACCA
Found at i:76593765 original size:43 final size:43
Alignment explanation
Indices: 76593699--76593788 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
76593689 TGGGACATCA
* * ** *
76593699 GCATCGTATTTGATTTTCGTGTAAGACCTTGTCTAGGACAGTG
1 GCATCGTATTTGATTTACATGTAAGACCACGTCTAGGAAAGTG
*
76593742 GCATCGATATTTGA-TTACATGTAAGACCACGTCTAGGAAATTG
1 GCATCG-TATTTGATTTACATGTAAGACCACGTCTAGGAAAGTG
76593785 GCAT
1 GCAT
76593789 TGTACGAGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
43 33 0.82
44 7 0.17
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
GCATCGTATTTGATTTACATGTAAGACCACGTCTAGGAAAGTG
Found at i:76595255 original size:46 final size:46
Alignment explanation
Indices: 76595205--76595330 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
76595195 TGGTTGAGCA
*
76595205 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
76595251 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
76595297 CCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
76595331 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:76600063 original size:16 final size:17
Alignment explanation
Indices: 76600044--76600083 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
76600034 TTCGTTCAAG
76600044 TTTCTTTTACTT-TTTT
1 TTTCTTTTACTTCTTTT
*
76600060 TTTCTTTTTCTTCTTTT
1 TTTCTTTTACTTCTTTT
76600077 TTT-TTTT
1 TTTCTTTT
76600084 TGCAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTCTTTTACTTCTTTT
Found at i:76605433 original size:22 final size:22
Alignment explanation
Indices: 76605391--76605433 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
76605381 CCTAGAATCG
*
76605391 ACTAAATCGTAACTCTGATACC
1 ACTAAATCGTAACCCTGATACC
*
76605413 ACTAAAT-GTAACACCTTATAC
1 ACTAAATCGTAAC-CCTGATAC
76605434 TTAGTCCGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.40, C:0.26, G:0.07, T:0.28
Consensus pattern (22 bp):
ACTAAATCGTAACCCTGATACC
Found at i:76613415 original size:41 final size:41
Alignment explanation
Indices: 76613370--76613487 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
76613360 TGAAAGATAA
76613370 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
76613411 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76613441 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76613482 ATGTAG
1 ATGTAG
76613488 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:76613426 original size:71 final size:71
Alignment explanation
Indices: 76613338--76613501 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76613328 GAGATGTATC
76613338 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76613403 AGGACA
66 AGGACA
76613409 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76613474 AGGACA
66 AGGACA
76613480 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
76613502 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:76617157 original size:2 final size:2
Alignment explanation
Indices: 76617150--76617191 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
76617140 TTCCTTATCC
76617150 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76617192 CTCCATAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76623210 original size:26 final size:26
Alignment explanation
Indices: 76623168--76623231 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
76623158 ATTATCATGG
* *
76623168 AACCCGTTATCATGGAATATTTACCT
1 AACCCATTATCATGGAACATTTACCT
*
76623194 AATCCATTATCATGGAACATTTACCT
1 AACCCATTATCATGGAACATTTACCT
76623220 AACCCATTATCA
1 AACCCATTATCA
76623232 ATTTGTACCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.33
Consensus pattern (26 bp):
AACCCATTATCATGGAACATTTACCT
Found at i:76627383 original size:25 final size:25
Alignment explanation
Indices: 76627362--76627416 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 25
76627352 CTACAAAAAA
76627362 AACCCAACACCCCTAACCCAAATAAT
1 AACCCAA-ACCCCTAACCCAAATAAT
*
76627388 AA-CCAATCCCCTAACCCAAATAAT
1 AACCCAAACCCCTAACCCAAATAAT
76627412 AACCC
1 AACCC
76627417 CAAAACCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.45, C:0.42, G:0.00, T:0.13
Consensus pattern (25 bp):
AACCCAAACCCCTAACCCAAATAAT
Found at i:76627928 original size:7 final size:7
Alignment explanation
Indices: 76627913--76627951 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
76627903 CCCCAAACAC
*
76627913 CACCGTT
1 CACCATT
76627920 CACCATT
1 CACCATT
76627927 CACCATT
1 CACCATT
*
76627934 CACCGTT
1 CACCATT
*
76627941 TACCATT
1 CACCATT
76627948 CACC
1 CACC
76627952 TCTCATATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.23, C:0.44, G:0.05, T:0.28
Consensus pattern (7 bp):
CACCATT
Found at i:76629732 original size:55 final size:53
Alignment explanation
Indices: 76629589--76629783 Score: 201
Period size: 55 Copynumber: 3.6 Consensus size: 53
76629579 GTTACCATTT
*
76629589 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
** * * * ** * *
76629642 CCATACCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATG
* * * * *
76629697 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTTTAAAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATG
* * *
76629751 CCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGTATCCTT
76629784 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 28, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 35 0.31
54 38 0.34
55 39 0.35
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
Found at i:76633137 original size:26 final size:26
Alignment explanation
Indices: 76633108--76633157 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
76633098 TATAGAGATC
*
76633108 AAACTAAGTATTTAAGTACTTATTTT
1 AAACTAAGTATTTAAGCACTTATTTT
*
76633134 AAACTAAGTATTTGAGCACTTATT
1 AAACTAAGTATTTAAGCACTTATT
76633158 CATTTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (26 bp):
AAACTAAGTATTTAAGCACTTATTTT
Found at i:76635323 original size:24 final size:24
Alignment explanation
Indices: 76635296--76635347 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
76635286 TTCATAGGTC
** *
76635296 AAATAAATTATGGTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
* *
76635320 AAATATATTGTACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
76635344 AAAT
1 AAAT
76635348 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:76640073 original size:19 final size:19
Alignment explanation
Indices: 76640049--76640085 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
76640039 TCCTTTATAC
76640049 AAAATATAAATA-AATTAAA
1 AAAATA-AAATAGAATTAAA
76640068 AAAATAAAATAGAATTAA
1 AAAATAAAATAGAATTAA
76640086 TTGTTATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (19 bp):
AAAATAAAATAGAATTAAA
Found at i:76643063 original size:16 final size:16
Alignment explanation
Indices: 76643038--76643078 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
76643028 AAAGTGTATA
76643038 TAAT-TTAAATAATAG
1 TAATCTTAAATAATAG
76643053 TAATCTTAAATAATAG
1 TAATCTTAAATAATAG
76643069 TAATCTTAAA
1 TAATCTTAAA
76643079 AGGGACGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (16 bp):
TAATCTTAAATAATAG
Found at i:76643363 original size:38 final size:38
Alignment explanation
Indices: 76643312--76643386 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
76643302 ATACCACTTC
76643312 AAAGTACAATCTAATGTTGTTCTCTAGTATCTAGAGGT
1 AAAGTACAATCTAATGTTGTTCTCTAGTATCTAGAGGT
76643350 AAAGTACAATCTAATGTTGTTCTCTAGTATCTAGAGG
1 AAAGTACAATCTAATGTTGTTCTCTAGTATCTAGAGG
76643387 CAAACTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (38 bp):
AAAGTACAATCTAATGTTGTTCTCTAGTATCTAGAGGT
Found at i:76651490 original size:29 final size:29
Alignment explanation
Indices: 76651456--76651514 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
76651446 AAGTTTTAAG
*
76651456 TACAGTAAATTAAAAAATAAACTTAGAAT
1 TACAGTAAATTAAAAAATAAACTTAAAAT
76651485 TACAGTAAATTAAAAAATAAACTTAAAAT
1 TACAGTAAATTAAAAAATAAACTTAAAAT
76651514 T
1 T
76651515 GAGTTTCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.29
Consensus pattern (29 bp):
TACAGTAAATTAAAAAATAAACTTAAAAT
Found at i:76652612 original size:69 final size:69
Alignment explanation
Indices: 76652529--76652658 Score: 217
Period size: 69 Copynumber: 1.9 Consensus size: 69
76652519 TATATATAAG
76652529 CATTTATTTCATAACT-AATATTAACAGTATCATTAAGTGAATTTATAATATAACTAATATACTT
1 CATTTATTTCATAACTGAA-ATTAACAGTATCATTAAGTGAATTTATAATATAACTAATATACTT
76652593 CTACA
65 CTACA
* * *
76652598 CATTTATTTTATAACTGAAATTAACATTATTATTAAGTGAATTTATAATATAACTAATATA
1 CATTTATTTCATAACTGAAATTAACAGTATCATTAAGTGAATTTATAATATAACTAATATA
76652659 TTTATATCGA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
69 55 0.96
70 2 0.04
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (69 bp):
CATTTATTTCATAACTGAAATTAACAGTATCATTAAGTGAATTTATAATATAACTAATATACTTC
TACA
Found at i:76658231 original size:29 final size:29
Alignment explanation
Indices: 76658164--76658231 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
76658154 ATTCTTTCAA
* * *
76658164 TTTCTCCCAACATCTTTTTCTTCTCCCAT
1 TTTCTCTCTACATATTTTTCTTCTCCCAT
*
76658193 TTTCTCTCTACATATTTTTCTTCTCTCAT
1 TTTCTCTCTACATATTTTTCTTCTCCCAT
*
76658222 TTTCTTTCTA
1 TTTCTCTCTA
76658232 ACACAATATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.13, C:0.31, G:0.00, T:0.56
Consensus pattern (29 bp):
TTTCTCTCTACATATTTTTCTTCTCCCAT
Found at i:76666720 original size:8 final size:8
Alignment explanation
Indices: 76666707--76666758 Score: 58
Period size: 8 Copynumber: 6.8 Consensus size: 8
76666697 ATTAAATTTT
76666707 AATATTAA
1 AATATTAA
76666715 AATATT-A
1 AATATTAA
76666722 AA-ATTAA
1 AATATTAA
76666729 TGAATATTAA
1 --AATATTAA
76666739 AATATT--
1 AATATTAA
76666745 AATATTAA
1 AATATTAA
76666753 AATATT
1 AATATT
76666759 TTTAAAATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
6 9 0.24
7 4 0.11
8 18 0.47
9 2 0.05
10 5 0.13
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (8 bp):
AATATTAA
Found at i:76666722 original size:14 final size:14
Alignment explanation
Indices: 76666700--76666785 Score: 69
Period size: 14 Copynumber: 6.5 Consensus size: 14
76666690 TAATTTAATT
*
76666700 AAATTTTAATATTA
1 AAATATTAATATTA
*
76666714 AAATATTAAAATT-
1 AAATATTAATATTA
*
76666727 --A-ATGAATATTA
1 AAATATTAATATTA
76666738 AAATATTAATATTA
1 AAATATTAATATTA
76666752 AAATATT--T-TTA
1 AAATATTAATATTA
*
76666763 AAATGATAAATATTA
1 AAAT-ATTAATATTA
76666778 ATAATATT
1 A-AATATT
76666786 TATCAAGTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
10 7 0.12
11 8 0.14
12 3 0.05
13 1 0.02
14 28 0.50
15 6 0.11
16 3 0.05
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (14 bp):
AAATATTAATATTA
Found at i:76666736 original size:24 final size:24
Alignment explanation
Indices: 76666707--76666752 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
76666697 ATTAAATTTT
76666707 AATATTAAAATATTAAAATTAATG
1 AATATTAAAATATTAAAATTAATG
*
76666731 AATATTAAAATATTAATATTAA
1 AATATTAAAATATTAAAATTAA
76666753 AATATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
AATATTAAAATATTAAAATTAATG
Found at i:76666777 original size:26 final size:26
Alignment explanation
Indices: 76666711--76666786 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 26
76666701 AATTTTAATA
76666711 TTAAAATATTAAA-ATTAATGAATA---
1 TTAAAATA-TAAATATTAAT-AATATTT
*
76666735 TTAAAATATTAATATTAA-AATATTT
1 TTAAAATATAAATATTAATAATATTT
76666760 TTAAAATGATAAATATTAATAATATTT
1 TTAAAAT-ATAAATATTAATAATATTT
76666787 ATCAAGTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
22 4 0.09
23 3 0.07
24 13 0.30
25 7 0.16
26 10 0.23
27 7 0.16
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (26 bp):
TTAAAATATAAATATTAATAATATTT
Found at i:76668618 original size:7 final size:7
Alignment explanation
Indices: 76668606--76668631 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
76668596 ATAGTCGTTT
76668606 GTATTTA
1 GTATTTA
76668613 GTATTTA
1 GTATTTA
76668620 GTATTTA
1 GTATTTA
76668627 GTATT
1 GTATT
76668632 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:76668637 original size:14 final size:13
Alignment explanation
Indices: 76668603--76668637 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
76668593 AAAATAGTCG
76668603 TTTGTATTTAGTA
1 TTTGTATTTAGTA
76668616 TTTAGTATTTAGTA
1 TTT-GTATTTAGTA
76668630 TTATGTAT
1 TT-TGTAT
76668638 ATAACTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 3 0.15
14 16 0.80
15 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (13 bp):
TTTGTATTTAGTA
Found at i:76669183 original size:30 final size:29
Alignment explanation
Indices: 76669122--76669197 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 29
76669112 AAAGGATGAC
76669122 GACGCGGCCCATCAACAACGCCCACACAA
1 GACGCGGCCCATCAACAACGCCCACACAA
* * * *
76669151 GACGCGGACCCATCAACAGCGCTCATATAA
1 GACGCGG-CCCATCAACAACGCCCACACAA
*
76669181 GACACAGGCCCATCAAC
1 GACGC-GGCCCATCAAC
76669198 GGTGCCCATA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 7 0.17
30 31 0.77
31 2 0.05
ACGTcount: A:0.34, C:0.39, G:0.18, T:0.08
Consensus pattern (29 bp):
GACGCGGCCCATCAACAACGCCCACACAA
Found at i:76669318 original size:18 final size:18
Alignment explanation
Indices: 76669278--76669312 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
76669268 CCAAGTGCGT
*
76669278 ATCCTAGCCCTTATATGC
1 ATCCTAACCCTTATATGC
76669296 ATCCTAACCCTTATATG
1 ATCCTAACCCTTATATG
76669313 TTTCCTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
ATCCTAACCCTTATATGC
Found at i:76673268 original size:125 final size:127
Alignment explanation
Indices: 76672885--76673402 Score: 787
Period size: 126 Copynumber: 4.1 Consensus size: 127
76672875 CCAGATAGGA
*
76672885 ACTACTGTAGAAAAAGAGCGTCCACGT-GAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
1 ACTACTGTAGAAAAAGAGTGTCCACGTAGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
*
76672949 TGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAT
66 TGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAT
* *
76673011 ACTACTGTAGAAAAAGAGTGTCCAC-TTGAGAGCTTTTTTCAGTAATTTTGCTGACAATGCATCC
1 ACTACTGTAGAAAAAGAGTGTCCACGTAGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * * * *
76673075 TTCTTGAAGCGTTTTGGACAGTATTTGTTTATAAACATCTTCTCAAAGTTATTTTTTTAGAT
66 TGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAT
76673137 ACTACTGTAGAAAAAGAGCT-TCCACGTAG-GAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
1 ACTACTGTAGAAAAAGAG-TGTCCACGTAGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* *
76673200 CTGCTTGAA-CATTTTGGACACTATTTGTTCAGAAACATCTTCTTAAAATTATTTTTTCAAAT
65 CTGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAT
* * *
76673262 ACTACTGTAGAAAAAGAGTGTCCACGTAGA-AGTTTTTTTCAATAATTTTGCTGACAGTACATCC
1 ACTACTGTAGAAAAAGAGTGTCCACGTAGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * *
76673326 TGCTTGAAGTGTTTTCGACATTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAAAT
66 TGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAT
*
76673388 ACTATTGTAGAAAAA
1 ACTACTGTAGAAAAA
76673403 AATTTATATT
Statistics
Matches: 356, Mismatches: 30, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
124 1 0.00
125 112 0.31
126 240 0.67
127 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (127 bp):
ACTACTGTAGAAAAAGAGTGTCCACGTAGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAT
Found at i:76673334 original size:251 final size:252
Alignment explanation
Indices: 76672885--76673402 Score: 826
Period size: 251 Copynumber: 2.1 Consensus size: 252
76672875 CCAGATAGGA
76672885 ACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* *
76672950 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGATACTA
66 GCTTGAAGCATTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAAATACTA
* * * *
76673015 CTGTAGAAAAAGAGTGTCCACTTGAGAGCTTTTTTCAGTAATTTTGCTGACAATGCATCCTTCTT
131 CTGTAGAAAAAGAGTGTCCACTAGAGAGCTTTTTTCAATAATTTTGCTGACAATACATCCTGCTT
* * * * *
76673080 GAAGCGTTTTGGACAGTATTTGTTTATAAACATCTTCTCAAAGTTATTTTTTTAGAT
196 GAAGCGTTTTCGACAGTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAAAT
*
76673137 ACTACTGTAGAAAAAGAGCTTCCACGT-AGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
1 ACTACTGTAGAAAAAGAGCGTCCACGTGA-GAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
*
76673201 TGCTTGAA-CATTTTGGACACTATTTGTTCAGAAACATCTTCTTAAAATTATTTTTTCAAATACT
65 TGCTTGAAGCATTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAAATACT
* *
76673265 ACTGTAGAAAAAGAGTGTCCACGTAGA-AGTTTTTTTCAATAATTTTGCTGACAGTACATCCTGC
130 ACTGTAGAAAAAGAGTGTCCAC-TAGAGAGCTTTTTTCAATAATTTTGCTGACAATACATCCTGC
* * *
76673329 TTGAAGTGTTTTCGACATTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAAAT
194 TTGAAGCGTTTTCGACAGTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAAAT
*
76673388 ACTATTGTAGAAAAA
1 ACTACTGTAGAAAAA
76673403 AATTTATATT
Statistics
Matches: 245, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
251 173 0.71
252 72 0.29
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (252 bp):
ACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCATTTTGGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAAATACTA
CTGTAGAAAAAGAGTGTCCACTAGAGAGCTTTTTTCAATAATTTTGCTGACAATACATCCTGCTT
GAAGCGTTTTCGACAGTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAAAT
Found at i:76673636 original size:12 final size:12
Alignment explanation
Indices: 76673619--76673645 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76673609 ATAAAAAAGA
76673619 AGAAGAAGAAGG
1 AGAAGAAGAAGG
76673631 AGAAGAAGAAGG
1 AGAAGAAGAAGG
76673643 AGA
1 AGA
76673646 TATAAACTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (12 bp):
AGAAGAAGAAGG
Found at i:76676086 original size:14 final size:14
Alignment explanation
Indices: 76676067--76676112 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
76676057 ATCTAATACT
76676067 TAAAATAAAAATTA
1 TAAAATAAAAATTA
76676081 TAAAAT-AAAATTGA
1 TAAAATAAAAATT-A
76676095 -AATAATAAAATATTA
1 TAA-AATAAAA-ATTA
76676110 TAA
1 TAA
76676113 TAAAAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
13 8 0.30
14 10 0.37
15 4 0.15
16 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (14 bp):
TAAAATAAAAATTA
Found at i:76676091 original size:19 final size:19
Alignment explanation
Indices: 76676067--76676121 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
76676057 ATCTAATACT
*
76676067 TAAAATAAAAATTATAAAA
1 TAAAATAAAAATAATAAAA
**
76676086 TAAAATTGAAATAATAAAA
1 TAAAATAAAAATAATAAAA
76676105 TATTATAATAAAAATAA
1 TA--A-AATAAAAATAA
76676122 AAGCTTCTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 18 0.64
21 1 0.04
22 9 0.32
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAAATAAAAATAATAAAA
Found at i:76676876 original size:28 final size:28
Alignment explanation
Indices: 76676844--76676903 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
76676834 TGATTTTAAT
76676844 TAAAATAAAAAAT-ATATGTTTATTTGAA
1 TAAAATAAAAAATAATAT-TTTATTTGAA
*** *
76676872 TAAAATCTTATATAATATTTTATTTGAA
1 TAAAATAAAAAATAATATTTTATTTGAA
76676900 TAAA
1 TAAA
76676904 TTTTATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (28 bp):
TAAAATAAAAAATAATATTTTATTTGAA
Found at i:76676906 original size:15 final size:15
Alignment explanation
Indices: 76676862--76676910 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
76676852 AAAATATATG
76676862 TTTATTTGAATAAAAT
1 TTTATTTGAAT-AAAT
* *
76676878 CTTATAT-AAT--AT
1 TTTATTTGAATAAAT
76676890 TTTATTTGAATAAAT
1 TTTATTTGAATAAAT
76676905 TTTATT
1 TTTATT
76676911 AATACTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
12 7 0.27
13 3 0.12
15 11 0.42
16 5 0.19
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (15 bp):
TTTATTTGAATAAAT
Found at i:76677502 original size:21 final size:20
Alignment explanation
Indices: 76677478--76677530 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
76677468 TACTAATTAC
76677478 AAATATTTAATGAT-TATATTT
1 AAATATTTAAT-ATATA-ATTT
76677499 AAATATTTAATATATAATTT
1 AAATATTTAATATATAATTT
*
76677519 ATATATTCTAAT
1 AAATATT-TAAT
76677531 TAAATTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
AAATATTTAATATATAATTT
Found at i:76679925 original size:56 final size:57
Alignment explanation
Indices: 76679847--76680003 Score: 162
Period size: 56 Copynumber: 2.7 Consensus size: 57
76679837 TTTTAATAAG
* *
76679847 ATTATTATTAAATATAACTTAATAAAAAATAATAAATAATTTAAT-CATATTTTA-AT-
1 ATTATTATTAAATACAA-TTAATAAAAAATAATATATAATTTAATACAT-TTTTAGATA
*
76679903 ATTATTATTAAATACAATT--TAATAAAATGATATATAATTTAATAACATTTTTAGTATA
1 ATTATTATTAAATACAATTAATAA-AAAATAATATATAATTTAAT-ACATTTTTAG-ATA
*
76679961 ATTATTATTAAAATATGAATTAATAAAAATCATAATATATAAT
1 ATTATTATT-AAATA-CAATTAATAAAAA--ATAATATATAAT
76680004 ATTAGAAAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 17
0.79 0.05 0.16
Matches are distributed among these distances:
53 3 0.04
54 18 0.21
55 7 0.08
56 19 0.23
57 2 0.02
58 9 0.11
59 5 0.06
60 4 0.05
61 3 0.04
62 3 0.04
63 11 0.13
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (57 bp):
ATTATTATTAAATACAATTAATAAAAAATAATATATAATTTAATACATTTTTAGATA
Found at i:76680648 original size:19 final size:19
Alignment explanation
Indices: 76680624--76680663 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
76680614 TATAATATGG
*
76680624 ATAAAATAAAATTTAAATA
1 ATAAAACAAAATTTAAATA
76680643 ATAAAACAAAATTTAAATA
1 ATAAAACAAAATTTAAATA
76680662 AT
1 AT
76680664 GGAATTGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (19 bp):
ATAAAACAAAATTTAAATA
Found at i:76681518 original size:25 final size:25
Alignment explanation
Indices: 76681490--76681573 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 25
76681480 ACAACTAAAC
76681490 AAGTAATTCCTCATTACAAAAATCA
1 AAGTAATTCCTCATTACAAAAATCA
* **
76681515 AAGTAATTCCTAAAAACATAGAAGAATCA
1 AAGTAATTCCTCATTAC--A-AA-AATCA
* * *
76681544 AAGTAAATCCTCATTATAAACATCA
1 AAGTAATTCCTCATTACAAAAATCA
76681569 AAGTA
1 AAGTA
76681574 TCTTACCACT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
25 23 0.50
26 2 0.04
27 2 0.04
28 2 0.04
29 17 0.37
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (25 bp):
AAGTAATTCCTCATTACAAAAATCA
Found at i:76689683 original size:10 final size:10
Alignment explanation
Indices: 76689642--76689677 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
76689632 CATGAGATTT
76689642 TGATAT-ACA
1 TGATATGACA
76689651 TGATATGACA
1 TGATATGACA
*
76689661 TGATATGCCA
1 TGATATGACA
76689671 TGATATG
1 TGATATG
76689678 TTATGAGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 6 0.24
10 19 0.76
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:76689683 original size:20 final size:21
Alignment explanation
Indices: 76689648--76689697 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
76689638 ATTTTGATAT
*
76689648 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
** *
76689669 -CATGATATGTTATGAGGTGC
1 ACATGATATGACATGAGATGC
76689689 ACATGATAT
1 ACATGATAT
76689698 ACTCAATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:76689777 original size:25 final size:25
Alignment explanation
Indices: 76689743--76689814 Score: 126
Period size: 25 Copynumber: 2.9 Consensus size: 25
76689733 GTAGGAAGTG
*
76689743 CAAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
*
76689768 CAAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAC
76689793 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
76689815 ATTAAAAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:76689827 original size:24 final size:25
Alignment explanation
Indices: 76689745--76689827 Score: 93
Period size: 25 Copynumber: 3.4 Consensus size: 25
76689735 AGGAAGTGCA
* *
76689745 AAAAG-GGCTTTGCCCTAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
76689769 AAAA-AGGGCTTTGCCCCAGTTTATC
1 AAAAGA-GGCTTTGCCCCAGTTTATC
*
76689794 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
76689818 AAAAGAGGCT
1 AAAAGAGGCT
76689828 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
24 16 0.30
25 37 0.70
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:76690100 original size:30 final size:31
Alignment explanation
Indices: 76690033--76690102 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
76690023 CGCTTATAGT
*
76690033 AAAGGCTTCGCCCCAGTGATATGAATTTTGA
1 AAAGGCTTCGCCCCAGTGATATGAATTATGA
* *
76690064 AAAGGCTTCGGCCCAGTGTTATGAATTATG-
1 AAAGGCTTCGCCCCAGTGATATGAATTATGA
76690094 AAAGGCTTC
1 AAAGGCTTC
76690103 AGCCTAGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 9 0.25
31 27 0.75
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGCCCCAGTGATATGAATTATGA
Found at i:76697615 original size:11 final size:10
Alignment explanation
Indices: 76697582--76697638 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
76697572 CATGAGATTT
76697582 TGATAT-ACA
1 TGATATGACA
76697591 TGATATGACA
1 TGATATGACA
*
76697601 TGATATGCGCA
1 TGATATG-ACA
**
76697612 TGATATGTTA
1 TGATATGACA
*
76697622 TGAGATGCACA
1 TGATATG-ACA
76697633 TGATAT
1 TGATAT
76697639 ACTCAATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
9 6 0.16
10 17 0.45
11 15 0.39
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:76697615 original size:21 final size:21
Alignment explanation
Indices: 76697588--76697638 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
76697578 ATTTTGATAT
*
76697588 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
* **
76697609 GCATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
76697630 ACATGATAT
1 ACATGATAT
76697639 ACTCAATATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:76697718 original size:25 final size:25
Alignment explanation
Indices: 76697684--76697755 Score: 126
Period size: 25 Copynumber: 2.9 Consensus size: 25
76697674 GTAGGAAGTG
76697684 CAAAAAGGGTTTTGCCCCAGTTTAC
1 CAAAAAGGGTTTTGCCCCAGTTTAC
*
76697709 CAAAAAGGGTTTTGCCCCAGTTTAT
1 CAAAAAGGGTTTTGCCCCAGTTTAC
*
76697734 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGTTTTGCCCCAGTT
76697756 ATTAAAAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
CAAAAAGGGTTTTGCCCCAGTTTAC
Found at i:76697768 original size:24 final size:25
Alignment explanation
Indices: 76697686--76697768 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
76697676 AGGAAGTGCA
* *
76697686 AAAAG-GGTTTTGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
76697710 AAAA-AGGGTTTTGCCCCAGTTTATC
1 AAAAGA-GGCTTTGCCCCAGTTTATC
*
76697735 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
76697759 AAAAGAGGCT
1 AAAAGAGGCT
76697769 AGGTCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
24 16 0.30
25 37 0.70
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:76699747 original size:40 final size:40
Alignment explanation
Indices: 76699662--76699812 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
76699652 AATTGAATGA
* * * **
76699662 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
76699702 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
76699743 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
76699782 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
76699813 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:76699826 original size:40 final size:40
Alignment explanation
Indices: 76699699--76699828 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
76699689 ATGCTGGAAA
* * *
76699699 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
76699739 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
76699779 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
76699819 TTATATCCGG
1 TTATATCCGG
76699829 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:76707466 original size:40 final size:40
Alignment explanation
Indices: 76707381--76707531 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
76707371 AATTGAATGA
* * * **
76707381 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
76707421 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
76707462 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
76707501 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
76707532 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:76707545 original size:40 final size:40
Alignment explanation
Indices: 76707418--76707547 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
76707408 ATGCTGGAAA
* * *
76707418 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
76707458 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
76707498 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
76707538 TTATATCCGG
1 TTATATCCGG
76707548 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:76708970 original size:30 final size:31
Alignment explanation
Indices: 76708909--76708970 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
76708899 GGGTGTTACA
* **
76708909 AGTGATATGAATTTTGAAAAGGCTTTGGCCC
1 AGTGATATGAATTATGAAAAGGCTTCAGCCC
*
76708940 AGTGTTATGAATTATG-AAAGGCTTCAGCCC
1 AGTGATATGAATTATGAAAAGGCTTCAGCCC
76708970 A
1 A
76708971 ATATATGTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (31 bp):
AGTGATATGAATTATGAAAAGGCTTCAGCCC
Found at i:76710719 original size:8 final size:8
Alignment explanation
Indices: 76710706--76710746 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
76710696 AAATGCAAAG
76710706 GCTGAAAA
1 GCTGAAAA
76710714 GCTGAAAA
1 GCTGAAAA
* *
76710722 GCCGAAAG
1 GCTGAAAA
76710730 GCTGAAAA
1 GCTGAAAA
*
76710738 GCCGAAAA
1 GCTGAAAA
76710746 G
1 G
76710747 TGGGTTGTCG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.46, C:0.17, G:0.29, T:0.07
Consensus pattern (8 bp):
GCTGAAAA
Found at i:76710733 original size:16 final size:16
Alignment explanation
Indices: 76710709--76710746 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
76710699 TGCAAAGGCT
76710709 GAAAAGCTGAAAAGCC
1 GAAAAGCTGAAAAGCC
*
76710725 GAAAGGCTGAAAAGCC
1 GAAAAGCTGAAAAGCC
76710741 GAAAAG
1 GAAAAG
76710747 TGGGTTGTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.16, G:0.29, T:0.05
Consensus pattern (16 bp):
GAAAAGCTGAAAAGCC
Found at i:76711230 original size:27 final size:27
Alignment explanation
Indices: 76711147--76711236 Score: 112
Period size: 27 Copynumber: 3.3 Consensus size: 27
76711137 TATTTACTTA
76711147 AAAATGACTGAAATACCCCCA-TAGGAT
1 AAAATGACTGAAATA-CCCCAGTAGGAT
*
76711174 AAAATGACCGAAATACCCCAGTAGGAT
1 AAAATGACTGAAATACCCCAGTAGGAT
* **
76711201 AAAATGACTGTAATACCCGTGTAAGG-T
1 AAAATGACTGAAATACCCCAGT-AGGAT
76711228 AAAATGACT
1 AAAATGACT
76711237 ATTTTTTCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.09
27 48 0.86
28 3 0.05
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (27 bp):
AAAATGACTGAAATACCCCAGTAGGAT
Found at i:76713629 original size:20 final size:20
Alignment explanation
Indices: 76713606--76713643 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76713596 AAGATACATT
76713606 ATATAATCATCAACCTTTTC
1 ATATAATCATCAACCTTTTC
* *
76713626 ATATAATTATGAACCTTT
1 ATATAATCATCAACCTTT
76713644 CCATTAAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.18, G:0.03, T:0.42
Consensus pattern (20 bp):
ATATAATCATCAACCTTTTC
Found at i:76718695 original size:2 final size:2
Alignment explanation
Indices: 76718688--76718727 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
76718678 AGTATAGTTG
* *
76718688 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76718728 TCGGCCATCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:76719402 original size:29 final size:29
Alignment explanation
Indices: 76719367--76719440 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76719357 GTTGTGAGAT
* *
76719367 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76719396 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76719425 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76719441 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:76721796 original size:26 final size:26
Alignment explanation
Indices: 76721767--76721836 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
76721757 AAATATTTTA
* *
76721767 GTAAATATTCCATGATAATGGGTTAG
1 GTAAATGTTTCATGATAATGGGTTAG
76721793 GTAAATGTTTCATGATAATGGGTTAG
1 GTAAATGTTTCATGATAATGGGTTAG
76721819 GTAAATGTTTCATGATAA
1 GTAAATGTTTCATGATAA
76721837 GAATTTCATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
GTAAATGTTTCATGATAATGGGTTAG
Found at i:76725318 original size:51 final size:50
Alignment explanation
Indices: 76725261--76725458 Score: 341
Period size: 47 Copynumber: 4.0 Consensus size: 50
76725251 GTATAAGATA
76725261 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATG
76725312 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-G--TG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATG
*
76725359 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AATGTATA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATG
*
76725408 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATG
76725458 T
1 T
76725459 GTGATGTGTA
Statistics
Matches: 140, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
46 2 0.01
47 44 0.31
49 43 0.31
50 7 0.05
51 44 0.31
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (50 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATG
Found at i:76725434 original size:96 final size:98
Alignment explanation
Indices: 76725261--76725451 Score: 359
Period size: 96 Copynumber: 2.0 Consensus size: 98
76725251 GTATAAGATA
*
76725261 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
76725326 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
76725359 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AA-TGTATATATATATGTGATAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
76725422 GGCCTAATGGCCGATGTGATGAATGTGAAA
66 GGCCTAATGGCCGATGTGATGAATGTGAAA
76725452 TATATGTGTG
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
96 49 0.53
97 2 0.02
98 41 0.45
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.31
Consensus pattern (98 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:76725466 original size:49 final size:49
Alignment explanation
Indices: 76725258--76725458 Score: 318
Period size: 51 Copynumber: 4.1 Consensus size: 49
76725248 CATGTATAAG
*
76725258 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 ATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
76725307 GTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 ATATG--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
76725358 GTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAATGT
1 ATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
76725405 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-T
1 ATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
76725453 ATATGT
1 ATATGT
76725459 GTGATGTGTA
Statistics
Matches: 142, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
47 45 0.32
48 6 0.04
49 44 0.31
51 47 0.33
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (49 bp):
ATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:76725499 original size:48 final size:48
Alignment explanation
Indices: 76725443--76725594 Score: 232
Period size: 48 Copynumber: 3.2 Consensus size: 48
76725433 CGATGTGATG
*
76725443 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
* * ** * *
76725491 AATGTGAAACATATATAAGATATGTGTATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
*
76725539 AATGTAAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
76725587 AATGTGAA
1 AATGTGAA
76725595 TGTTGTAATA
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCT
Found at i:76725505 original size:96 final size:97
Alignment explanation
Indices: 76725312--76725595 Score: 266
Period size: 96 Copynumber: 2.9 Consensus size: 97
76725302 AAAGTGTATG
* * *
76725312 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TAT-ATGTG-ATAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TATATGTGTGATGTGTATAT
* * * * * **
76725373 G-GCCTAATGGCCGATGTGATGAATGTGAATGTATA
65 GTG-GTAA-AGCCGAAGGGCT-AATGTGAATACATA
76725408 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATGTGTGATGTGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATGTGTGATGTGTATATG
76725473 TGGTAAAGCCGAAGGGCTAATGTGAA-ACATA
66 TGGTAAAGCCGAAGGGCTAATGTGAATACATA
* * * * *
76725504 TATAAGATATGTG-TATGTG-GTAA-AGCCGAATG-GCT-AATGTAAAATATATGTGTGATGTGT
1 TAT---ATATGTGATAAG-GCCTAATGGCCG-ATGTGATGAATGTGAAATATATGTGTGATGTGT
*
76725564 ATATGTGGTAAAGCCGAATGGCTAATGTGAAT
61 ATATGTGGTAAAGCCGAAGGGCTAATGTGAAT
76725596 GTTGTAATAT
Statistics
Matches: 161, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
95 3 0.02
96 104 0.65
97 16 0.10
98 22 0.14
99 15 0.09
100 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (97 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATGTGTGATGTGTATATG
TGGTAAAGCCGAAGGGCTAATGTGAATACATA
Found at i:76725688 original size:37 final size:37
Alignment explanation
Indices: 76725634--76725761 Score: 220
Period size: 37 Copynumber: 3.4 Consensus size: 37
76725624 AACTTGGAAA
* *
76725634 TATGTTCCGGGTGAGACCCGATGACCACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
76725672 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
76725709 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
76725746 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
76725762 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:76732962 original size:27 final size:27
Alignment explanation
Indices: 76732927--76733111 Score: 273
Period size: 27 Copynumber: 6.9 Consensus size: 27
76732917 AAATACTTTG
* *
76732927 GTTTATAAAATTACCAAAATACCTCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
76732954 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
76732981 GTTTGTAAAATTATCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
76733008 GTTTGTAAAATTACCAAAATACCCCAA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
76733035 GTTTGTAAAATTATCAAAATA-CCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
76733061 GTTTGTAAAATTACCAATATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
* * **
76733088 ATTTGTGAAATTACTGAAATACCC
1 GTTTGTAAAATTACCAAAATACCC
76733112 TCGACCTGTA
Statistics
Matches: 143, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 23 0.16
27 120 0.84
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCTA
Found at i:76733125 original size:27 final size:27
Alignment explanation
Indices: 76733095--76733169 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
76733085 CTAATTTGTG
76733095 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
76733122 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
76733149 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
76733170 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:76733135 original size:107 final size:108
Alignment explanation
Indices: 76732927--76733166 Score: 290
Period size: 107 Copynumber: 2.2 Consensus size: 108
76732917 AAATACTTTG
* *
76732927 GTTTATAAAATTACCAAAATACCTCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAAT
1 GTTTGTAAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAAT
* **
76732992 TATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CAA
65 TATCAAAATACCCCGAGCCTGTAAAATTACCAAAATACCCTCAA
* * *
76733035 GTTTGTAAAATTATCAAAATACCCTAGTTTGTAAAATTACCAATATACCCCTAATTTGTGAAATT
1 GTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATT
* *** *
76733100 A-CTGAAATACCCTCGA-CCTGTAAAATTATTGAAATACCCTCGA
66 ATC-AAAATACCC-CGAGCCTGTAAAATTACCAAAATACCCTCAA
* *
76733143 -CTTGTAAAATTACCAAAGTACCCT
1 GTTTGTAAAATTACCAAAATACCCT
76733167 CGATTTATAG
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
106 1 0.01
107 87 0.77
108 25 0.22
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (108 bp):
GTTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATT
ATCAAAATACCCCGAGCCTGTAAAATTACCAAAATACCCTCAA
Found at i:76733181 original size:54 final size:54
Alignment explanation
Indices: 76732932--76733292 Score: 148
Period size: 54 Copynumber: 6.7 Consensus size: 54
76732922 CTTTGGTTTA
* * * * * * *
76732932 TAAAATTACCAAAATA-CCTCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTG
* * * * * * * *
76732986 TAAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CAAGTTTG
1 TAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTG
* * * * * * *
76733040 TAAAATTATCAAAATACCCTAG-TTTGTAAAATTACC-AATATACCC-CTAATTTG
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAA-ATACCCTC-GACTTG
* * ** * * **
76733093 TGAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTG
1 TAAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
*** *
76733147 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTG
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
**** * *** *
76733201 TAAAATTACCGTTTTACCTTCGATTTATAGAATTACCGTTTTACCCTC-AGTT-
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
* ***
76733253 TACAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 TA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCG
76733293 TTTTACCCCT
Statistics
Matches: 261, Mismatches: 35, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
52 4 0.02
53 46 0.18
54 206 0.79
55 5 0.02
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (54 bp):
TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
Found at i:76733507 original size:27 final size:27
Alignment explanation
Indices: 76733161--76733506 Score: 419
Period size: 27 Copynumber: 12.8 Consensus size: 27
76733151 ATTACCAAAG
*
76733161 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
76733188 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76733215 TACCTTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
76733242 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
76733269 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76733296 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
76733323 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
76733350 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76733377 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76733404 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76733431 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76733458 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76733485 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
76733507 TAAAATACCC
Statistics
Matches: 283, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 279 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:76733530 original size:27 final size:27
Alignment explanation
Indices: 76733485--76733570 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
76733475 ATTACTGTTT
* ** *
76733485 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
* * * **
76733512 TACCCTTAGTTTGTGAAATTACCGCAA
1 TACCCTCAATTTGTAAAATTACCAAAA
*
76733539 TACCCTCAATTTGTAAAACTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
76733566 TACCC
1 TACCC
76733571 CTGTATGGTA
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.38, C:0.26, G:0.07, T:0.29
Consensus pattern (27 bp):
TACCCTCAATTTGTAAAATTACCAAAA
Found at i:76734774 original size:25 final size:25
Alignment explanation
Indices: 76734745--76734792 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76734735 TTATAATATG
* * *
76734745 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76734770 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76734793 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:76734860 original size:20 final size:20
Alignment explanation
Indices: 76734835--76734874 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
76734825 ATAAATATGG
*
76734835 TATGTATGCTATGCACATGA
1 TATGTATGATATGCACATGA
76734855 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
76734875 GGTAATCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:76735042 original size:25 final size:24
Alignment explanation
Indices: 76734925--76735030 Score: 167
Period size: 24 Copynumber: 4.4 Consensus size: 24
76734915 GAGGAAGTGA
76734925 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
76734949 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
76734973 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
76734997 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
76735021 AAAAGAGGCT
1 AAAAG-GGCT
76735031 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
24 73 0.95
25 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:76735270 original size:31 final size:31
Alignment explanation
Indices: 76735232--76735313 Score: 146
Period size: 31 Copynumber: 2.6 Consensus size: 31
76735222 ATACCGTTTA
*
76735232 CAGTAATATAAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
76735263 CAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
*
76735294 CAGTATTATGAAATATGAAA
1 CAGTAATATGAAATATGAAA
76735314 TATGAAAAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (31 bp):
CAGTAATATGAAATATGAAAAGGCTTCGGCC
Found at i:76736376 original size:25 final size:25
Alignment explanation
Indices: 76736342--76736396 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
76736332 CGGTTAAAGA
76736342 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
76736367 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
76736392 ATTCG
1 ATTCG
76736397 TTATTACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:76736601 original size:39 final size:40
Alignment explanation
Indices: 76736558--76736637 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
76736548 AATACACATA
76736558 ACCAGCA-GAATGCTCTTCGGGACTTAGCCCGGATATAAC
1 ACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
*
76736597 ACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAAC
1 ACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
76736637 A
1 A
76736638 TACTGAACTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 7 0.18
40 32 0.82
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.21
Consensus pattern (40 bp):
ACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
Found at i:76740107 original size:3 final size:3
Alignment explanation
Indices: 76740093--76740137 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
76740083 AAATTAAGTA
* * *
76740093 AAT AAT AA- AAT AAT AAT AGT AGT AAT AAT AAT GAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
76740138 TTCAACAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:76742222 original size:37 final size:38
Alignment explanation
Indices: 76742169--76742271 Score: 167
Period size: 37 Copynumber: 2.8 Consensus size: 38
76742159 CGAATAGTCC
*
76742169 CCACACGTAGTTATCGGGTCTTACCT-GGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCTCGGACAAAATCT
*
76742206 CCACACGTAGTCATCGGGTCTTA-CTCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCTCGGACAAAATCT
76742243 CCACACGTAGTCATCGGGTCTTACC-CGGA
1 CCACACGTAGTCATCGGGTCTTACCTCGGA
76742272 ATATATTTCC
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
36 2 0.03
37 59 0.95
38 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (38 bp):
CCACACGTAGTCATCGGGTCTTACCTCGGACAAAATCT
Found at i:76742469 original size:48 final size:48
Alignment explanation
Indices: 76742411--76743253 Score: 657
Period size: 48 Copynumber: 17.3 Consensus size: 48
76742401 ATATACACAC
*
76742411 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
76742459 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76742507 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76742555 ATCACATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76742603 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76742651 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76742699 ATCACATACATATTTCACATTAGCCATTCGGCTTTACCACATATTTCACATT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA--T-ACA-T
* * *** ** * * * *
76742751 AGC-CATTCGGCTTT-ACCACATATACATATC-TC-ATA-CATATTTCACATT
1 ATCTCATACATATTTCA-CAC-TAGCCAT-TCGGCTTTACCACATAT-ACA-T
* * *** ** * * * *
76742799 AGC-CATTCGGCTTT-ACCACATATACATATC-TC-ATA-CATATTTCACATT
1 ATCTCATACATATTTCA-CAC-TAGCCAT-TCGGCTTTACCACATAT-ACA-T
* * *** ** * * * *
76742847 AGC-CATTCGGCTTT-ACCACATATACATATC-AC-ATA-CATATTTCACATT
1 ATCTCATACATATTTCA-CAC-TAGCCAT-TCGGCTTTACCACATAT-ACA-T
* * *** * * * * ** * *
76742895 AGC-CATTCGGCTTT-ACCACATATTTCACATTAGCCATT-CGGCTTTACCACAT
1 ATCTCATACATATTTCA-CAC-TA--GC-CATTCGGCTTTACCAC-ATA-TACAT
* * ** *
76742947 ATACAT-ATCTCATACATATTTCAC-ATTAGCCATTCGGCTTTACCACATATACAT
1 AT-C-TCAT-ACAT--ATTTCACACTA-G--CCATTCGGCTTTACCACATATACAT
*
76743001 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-ACT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACA-T
*
76743049 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACCT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
76743097 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
76743145 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76743193 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76743241 ATCACATACATAT
1 ATCTCATACATAT
76743254 ATATTTATCT
Statistics
Matches: 714, Mismatches: 52, Indels: 58
0.87 0.06 0.07
Matches are distributed among these distances:
47 1 0.00
48 624 0.87
50 13 0.02
51 19 0.03
52 16 0.02
53 10 0.01
54 10 0.01
55 13 0.02
56 3 0.00
57 5 0.01
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:76742525 original size:96 final size:96
Alignment explanation
Indices: 76742411--76743253 Score: 919
Period size: 96 Copynumber: 8.6 Consensus size: 96
76742401 ATATACACAC
* *
76742411 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
76742476 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
76742507 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
76742572 CATTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
76742603 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
76742668 CATTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* * * ***
76742699 ATCACATACATATTTCACATTAGCCATTCGGCTTTACCACATATTTCACATTAGC-CATTCGGCT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA--T-ACA-TATCTCATACATAT
** * * * *
76742763 TT-ACCACATATACATATC-TC-ATA-CATATTTCACATT
62 TTCA-CAC-TAGCCAT-TCGGCTTTACCACATAT-ACA-T
* * *** * ** * *
76742799 AGC-CATTCGGCTTTACCACATATA-CATATCTCATACATATT-TCACAT-TAGCCAT-TCGGCT
1 ATCTCATACATATTT--CACAT-TAGC-CAT-TC-GGC-T-TTACCACATATA--CATATC-TC-
* * * * * ***
76742859 TTACCACATAT-ACA-TATCACATACATATTT--CACAT-TAGCCAT
54 ATA-CATATTTCACACTAGC-CATTCGGCTTTACCACATATA--CAT
* *
76742901 -TCGGCTTTACCACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
1 AT---C-TCA-TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
*
76742965 TTTCACATTAGCCATTCGGCTTTACCACATATACAT
61 TTTCACACTAGCCATTCGGCTTTACCACATATACAT
76743001 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-ACTATCTCATACATATTTC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA-TATCTCATACATATTTC
*
76743065 ACACTAGCCATTCGGCTTTACCACATATACCT
65 ACACTAGCCATTCGGCTTTACCACATATACAT
*
76743097 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
76743162 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
76743193 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
76743254 ATATTTATCT
Statistics
Matches: 634, Mismatches: 67, Indels: 92
0.80 0.08 0.12
Matches are distributed among these distances:
95 1 0.00
96 465 0.73
97 3 0.00
98 13 0.02
99 36 0.06
100 24 0.04
101 25 0.04
102 17 0.03
103 17 0.03
104 10 0.02
105 16 0.03
106 3 0.00
107 4 0.01
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:76742579 original size:144 final size:144
Alignment explanation
Indices: 76742417--76743253 Score: 907
Period size: 144 Copynumber: 5.7 Consensus size: 144
76742407 ACACATCTCC
*
76742417 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
76742482 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
76742547 ATATACATATCACA
131 ATATACATATCACA
*
76742561 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
76742626 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
76742691 ATATACATATCACA
131 ATATACATATCACA
* * ***
76742705 TACATATTTCACATTAGCCATTCGGCTTTACCACATATTTCACATTAGC-CATTCGGCTTT-ACC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATA--T-ACA-TATCTCATACATATTTCA-C
** * * * * * * *** *
76742768 ACATATACATATC-TC-ATA-CATATTTCACATTAGC-CATTCGGCTTTACCACATATA-CATAT
61 AC-TAGCCAT-TCGGCTTTACCACATAT-ACA-TATCTCATACATATTT--CACAT-TAGC-CAT
** * * *
76742828 CTCATACATATT-TCACAT-TAGCCAT-TCGGCTT
118 -TC-GGC-T-TTACCACATATA--CATATC-AC-A
* * * * *** * *
76742860 TACCACATAT-ACA-TATCACATACATATTT--CACAT-TAGCCAT-TCGGCTTTACCACATATT
1 TA-CATATTTCACATTAGC-CATTCGGCTTTACCACATATA--CATAT---C-TCA-TACATATT
*
76742919 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
57 TCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
*
76742984 CTTTACCACATATACATATCTCA
122 CTTTACCACATATACATATCACA
76743007 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA-ACTATCTCATACATATTTCACACTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACA-TATCTCATACATATTTCACACTA
* *
76743071 GCCATTCGGCTTTACCACATATACCTATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
65 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
*
76743136 CATATACATATCTCA
130 CATATACATATCACA
* *
76743151 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
*
76743216 CCATTCGGCTTTACCACATATACATATCACATACATAT
66 CCATTCGGCTTTACCACATATACATATCTCATACATAT
76743254 ATATTTATCT
Statistics
Matches: 572, Mismatches: 73, Indels: 96
0.77 0.10 0.13
Matches are distributed among these distances:
144 368 0.64
145 3 0.01
146 13 0.02
147 37 0.06
148 22 0.04
149 23 0.04
150 11 0.02
151 6 0.01
152 8 0.01
153 21 0.04
154 19 0.03
155 30 0.05
156 11 0.02
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (144 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACATATCACA
Found at i:76742743 original size:31 final size:31
Alignment explanation
Indices: 76742706--76742773 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
76742696 CATATCACAT
76742706 ACATATTTCACATTAGCCATTCGGCTTTACC
1 ACATATTTCACATTAGCCATTCGGCTTTACC
76742737 ACATATTTCACATTAGCCATTCGGCTTTACC
1 ACATATTTCACATTAGCCATTCGGCTTTACC
76742768 ACATAT
1 ACATAT
76742774 ACATATCTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (31 bp):
ACATATTTCACATTAGCCATTCGGCTTTACC
Found at i:76742744 original size:79 final size:79
Alignment explanation
Indices: 76742658--76742821 Score: 319
Period size: 79 Copynumber: 2.1 Consensus size: 79
76742648 CATATCTCAT
76742658 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGC
76742723 CATTCGGCTTTACC
66 CATTCGGCTTTACC
*
76742737 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGC
76742802 CATTCGGCTTTACC
66 CATTCGGCTTTACC
76742816 ACATAT
1 ACATAT
76742822 ACATATCTCA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 84 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (79 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGC
CATTCGGCTTTACC
Found at i:76742748 original size:127 final size:127
Alignment explanation
Indices: 76742610--76743236 Score: 580
Period size: 127 Copynumber: 5.0 Consensus size: 127
76742600 CATATCTCAT
76742610 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
*
76742675 CATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACC
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
76742737 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
76742802 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
* * *** * *
76742864 ACATA--T-ACA-TATCACATACATATTT--CACAT-TAGCCAT-TCGGCTTTACCACATATTTC
1 ACATATTTCACATTAGC-CATTCGGCTTTACCACATATA--CATAT---C-TCA-TACATATTTC
76742921 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
58 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
76742986 TTACC
123 TTACC
* * *** * ** *
76742991 ACATA--T-ACA-TATCTCATACATATTT--CACAT-TAGC-CAT-TC-GGC-T-TTACCACATA
1 ACATATTTCACATTAGC-CATTCGGCTTTACCACATATA-CATATCTCATACATATT-TCACAT-
* * * * * * * * ***
76743044 TAACTA-TC-TC-ATA-CATATTTCACACTAGC-CATTCGGCTTTACCACATATA-CC-TAT---
62 TAGCCATTCGGCTTTACCACATAT-ACA-TATCTCATACATATTT--CACAT-TAGCCAT-TCGG
* *
76743099 C-TCA-T
121 CTTTACC
* *
76743104 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
76743169 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
76743231 ACATAT
1 ACATAT
76743237 ACATATCACA
Statistics
Matches: 408, Mismatches: 51, Indels: 82
0.75 0.09 0.15
Matches are distributed among these distances:
113 5 0.01
114 2 0.00
115 7 0.02
116 22 0.05
117 10 0.02
118 22 0.05
119 11 0.03
120 2 0.00
121 10 0.02
122 21 0.05
123 13 0.03
124 22 0.05
125 8 0.02
126 6 0.01
127 247 0.61
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (127 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
Found at i:76742761 original size:175 final size:175
Alignment explanation
Indices: 76742562--76743253 Score: 1188
Period size: 175 Copynumber: 3.9 Consensus size: 175
76742552 CATATCACAT
76742562 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
76742627 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
76742692 TATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACC
131 TATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACC
76742737 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
76742802 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
76742867 TATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACC
131 TATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACC
76742912 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
76742977 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
* *
76743042 TATA-ACTATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
131 TATACA-TATCACATACATATTTCACATTAGCCATTCGGCTTTACC
76743087 ACATATACCTATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 AC--ATA--T-T-TC--AC--A--T-----TAGCCATTCGGCTTTACCACATATACATATCTCAT
*
76743152 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
49 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
76743217 CATTCGGCTTTACCACATATACATATCACATACATAT
114 CATTCGGCTTTACCACATATACATATCACATACATAT
76743254 ATATTTATCT
Statistics
Matches: 494, Mismatches: 4, Indels: 21
0.95 0.01 0.04
Matches are distributed among these distances:
174 1 0.00
175 348 0.70
177 3 0.01
179 1 0.00
180 1 0.00
181 2 0.00
183 2 0.00
185 1 0.00
187 1 0.00
192 133 0.27
193 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (175 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
TATACATATCACATACATATTTCACATTAGCCATTCGGCTTTACC
Found at i:76742918 original size:31 final size:31
Alignment explanation
Indices: 76742881--76742948 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
76742871 CATATCACAT
76742881 ACATATTTCACATTAGCCATTCGGCTTTACC
1 ACATATTTCACATTAGCCATTCGGCTTTACC
76742912 ACATATTTCACATTAGCCATTCGGCTTTACC
1 ACATATTTCACATTAGCCATTCGGCTTTACC
76742943 ACATAT
1 ACATAT
76742949 ACATATCTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (31 bp):
ACATATTTCACATTAGCCATTCGGCTTTACC
Found at i:76742919 original size:79 final size:79
Alignment explanation
Indices: 76742833--76742996 Score: 319
Period size: 79 Copynumber: 2.1 Consensus size: 79
76742823 CATATCTCAT
76742833 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGC
76742898 CATTCGGCTTTACC
66 CATTCGGCTTTACC
*
76742912 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGC
76742977 CATTCGGCTTTACC
66 CATTCGGCTTTACC
76742991 ACATAT
1 ACATAT
76742997 ACATATCTCA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 84 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (79 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACATACATATTTCACATTAGC
CATTCGGCTTTACC
Found at i:76745697 original size:40 final size:40
Alignment explanation
Indices: 76745653--76745969 Score: 548
Period size: 40 Copynumber: 8.0 Consensus size: 40
76745643 GAATACACAT
* * *
76745653 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
76745693 CACCAGCACGAATGCTCTTCGGGACTTATCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
76745733 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
76745773 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
76745813 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
76745853 CACCAGCACGAATGCTCTTCGGGACTTAGCCC-GACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
76745892 CACCAGCACGAATGCTCTTCGGGAC-TAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
76745931 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
76745970 TAACTCTCAA
Statistics
Matches: 265, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
38 6 0.02
39 63 0.24
40 196 0.74
ACGTcount: A:0.27, C:0.32, G:0.22, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:76747369 original size:48 final size:48
Alignment explanation
Indices: 76747298--76747569 Score: 526
Period size: 48 Copynumber: 5.7 Consensus size: 48
76747288 GTAGTCATCG
76747298 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
76747346 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
*
76747394 GGCTTTACCACATATACATATCACATACATATTTCACATTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
76747442 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
76747490 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
1 GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
*
76747538 GGCTTTACCACATATACATATCACATACATAT
1 GGCTTTACCACATATACATATCTCATACATAT
76747570 ATATTTATCT
Statistics
Matches: 221, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
GGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
Found at i:76751056 original size:30 final size:30
Alignment explanation
Indices: 76751020--76751154 Score: 103
Period size: 30 Copynumber: 4.5 Consensus size: 30
76751010 CACAAAGTTA
* *
76751020 TTTCATAATTCGATTCCCGAAGCTCTCCCT
1 TTTCATAATTCGATACCCGAAGCTATCCCT
* *
76751050 TTTCATAATTTGATAGCCGAAGCTATCCCT
1 TTTCATAATTCGATACCCGAAGCTATCCCT
* *** * *
76751080 TTTCATAGCTTC-ATGGTCGTCA-CCATCCCT
1 TTTCATA-ATTCGATACCCG-AAGCTATCCCT
* * * *
76751110 TTTCATAATTTGATAGCTGAAGCTATCCTT
1 TTTCATAATTCGATACCCGAAGCTATCCCT
*
76751140 TTTCATAATTTGATA
1 TTTCATAATTCGATA
76751155 TCCCTTTTCA
Statistics
Matches: 83, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
29 3 0.04
30 77 0.93
31 3 0.04
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (30 bp):
TTTCATAATTCGATACCCGAAGCTATCCCT
Found at i:76754826 original size:40 final size:40
Alignment explanation
Indices: 76754762--76754951 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
76754752 GCTACTCGTT
* * * ***
76754762 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
76754802 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
76754842 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* **
76754881 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
76754919 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
76754952 TTCGCACATT
Statistics
Matches: 134, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 35 0.26
39 54 0.40
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:76754895 original size:38 final size:39
Alignment explanation
Indices: 76754798--76754959 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
76754788 TATGGTAACC
* *
76754798 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
76754838 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76754877 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76754915 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
76754954 CGCACA
1 CGCACA
76754960 TTCATACACA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:76754957 original size:77 final size:78
Alignment explanation
Indices: 76754806--76754961 Score: 260
Period size: 77 Copynumber: 2.0 Consensus size: 78
76754796 CCCGCACAAA
76754806 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
76754871 ATAGCTCGCACAT
66 ACAACTCGCACAT
* *
76754884 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
*
76754948 ACAATTCGCACAT
66 ACAACTCGCACAT
76754961 T
1 T
76754962 CATACACATC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
77 63 0.86
78 10 0.14
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACAT
Found at i:76762791 original size:40 final size:39
Alignment explanation
Indices: 76762727--76762925 Score: 236
Period size: 39 Copynumber: 5.1 Consensus size: 39
76762717 GCTACTCGTT
* * * ** *
76762727 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
76762767 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
76762807 CAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
76762846 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
76762885 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
76762924 CA
1 CA
76762926 TTCATACACA
Statistics
Matches: 144, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.69
40 45 0.31
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:76762844 original size:39 final size:39
Alignment explanation
Indices: 76762763--76762925 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
76762753 TATGGTAACC
* *
76762763 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
76762803 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76762842 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76762881 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
76762920 CGCACA
1 CGCACA
76762926 TTCATACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:76764835 original size:18 final size:17
Alignment explanation
Indices: 76764814--76764868 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
76764804 ACAATTCTTT
76764814 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
76764832 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
76764849 TCTTCTTCTTCTTTTC-C
1 TC-TCTTCTTCTTTTCTC
76764866 TCT
1 TCT
76764869 ATAGCCGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.28
18 19 0.59
19 3 0.09
ACGTcount: A:0.04, C:0.35, G:0.00, T:0.62
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:76765922 original size:27 final size:25
Alignment explanation
Indices: 76765890--76765948 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
76765880 ATTTACTAAA
*
76765890 ATACCCTAAGTATG-AAAATTACCATT
1 ATACCCT-AG-ATGCAAAATGACCATT
*
76765916 ATAACCCTAGGTGCAAAATGACCATT
1 AT-ACCCTAGATGCAAAATGACCATT
76765942 ATACCCT
1 ATACCCT
76765949 TAAGGTTGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 7 0.24
26 17 0.59
27 5 0.17
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (25 bp):
ATACCCTAGATGCAAAATGACCATT
Found at i:76766092 original size:27 final size:27
Alignment explanation
Indices: 76766054--76766169 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
76766044 TGGAGGAAGC
76766054 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
*
76766081 GTTCTGGTGGCTTTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
76766108 GTTTCTGGTGGCCCTACCACAATTATCT
1 G-TTCTGGTGGCTCTGCCACAAATATCT
* * *
76766136 GTATCTGGTGACTTTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
76766163 GTTCTGG
1 GTTCTGG
76766170 CAGCCATGTT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.07
27 36 0.47
28 35 0.46
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:76766127 original size:28 final size:28
Alignment explanation
Indices: 76766055--76766169 Score: 137
Period size: 28 Copynumber: 4.2 Consensus size: 28
76766045 GGAGGAAGCG
76766055 TTCTGGTGGCTCTGCCACAAATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
76766082 TTCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
76766110 TTCTGGTGGCCCTACCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
76766138 ATCTGGTGACTTTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
76766164 TTCTGG
1 TTCTGG
76766170 CAGCCATGTT
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
26 5 0.07
27 33 0.45
28 36 0.49
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:76766160 original size:55 final size:54
Alignment explanation
Indices: 76766054--76766169 Score: 162
Period size: 55 Copynumber: 2.1 Consensus size: 54
76766044 TGGAGGAAGC
* * *
76766054 GTTCTGGTGGCTCTGCCACAAATATCTGTTCTGGTGGCTTTGCCACAAATATCT
1 GTTCTGGTGGCCCTACCACAAATATCTGTTCTGGTGACTTTGCCACAAATATCT
* *
76766108 GTTTCTGGTGGCCCTACCACAATTATCTGTATCTGGTGACTTTGTCAC-AATATCT
1 G-TTCTGGTGGCCCTACCACAAATATCTGT-TCTGGTGACTTTGCCACAAATATCT
76766163 GTTCTGG
1 GTTCTGG
76766170 CAGCCATGTT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
54 7 0.13
55 33 0.60
56 15 0.27
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCCCTACCACAAATATCTGTTCTGGTGACTTTGCCACAAATATCT
Found at i:76769650 original size:24 final size:24
Alignment explanation
Indices: 76769603--76769720 Score: 172
Period size: 23 Copynumber: 5.0 Consensus size: 24
76769593 GCTTTATCAT
*
76769603 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
76769628 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
76769652 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
76769675 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
76769698 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
76769721 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
23 47 0.53
24 27 0.31
25 14 0.16
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:76769797 original size:20 final size:20
Alignment explanation
Indices: 76769774--76769816 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
76769764 GAACATCTCG
*
76769774 TGTGCGTATCATACATATCA
1 TGTGCATATCATACATATCA
76769794 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
76769814 TGT
1 TGT
76769817 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:76769881 original size:25 final size:25
Alignment explanation
Indices: 76769853--76769900 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76769843 ATGTATAAAC
* * *
76769853 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
76769878 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
76769901 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:76772905 original size:24 final size:24
Alignment explanation
Indices: 76772865--76772926 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
76772855 GATTATGTAG
76772865 AAAGAATAAAGAAATGA-AAAAAAA
1 AAAGAA-AAAGAAATGATAAAAAAA
* * *
76772889 AAAGAAAGAGAATATGATGAAAAAC
1 AAAGAAAAAGAA-ATGATAAAAAAA
*
76772914 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
76772927 AAAAAAGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
23 5 0.16
24 11 0.35
25 15 0.48
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.08
Consensus pattern (24 bp):
AAAGAAAAAGAAATGATAAAAAAA
Found at i:76774124 original size:29 final size:29
Alignment explanation
Indices: 76774091--76774155 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
76774081 GTGACGAGAT
*
76774091 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
76774120 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
76774149 CGGCACT
1 TGGCACT
76774156 GGGTGTACGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:76775745 original size:25 final size:25
Alignment explanation
Indices: 76775716--76775807 Score: 121
Period size: 25 Copynumber: 3.7 Consensus size: 25
76775706 CTGTGAATGG
* * *
76775716 GTATGCTCACTCGAGCTATAGATCA
1 GTATGCTCTCACGAGCTATAAATCA
* * *
76775741 ATATGCTCTCACGAGTTATAAATCG
1 GTATGCTCTCACGAGCTATAAATCA
*
76775766 GTATGCTCTTACGAGCTATAAATCA
1 GTATGCTCTCACGAGCTATAAATCA
76775791 GTATGCTCTCACGAGCT
1 GTATGCTCTCACGAGCT
76775808 GTGGAGCATC
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATAAATCA
Found at i:76778238 original size:25 final size:24
Alignment explanation
Indices: 76778210--76778278 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
76778200 ATTCTGACCC
76778210 ACAGCTCGTGAGAGCATACTGATCT
1 ACAGCTCGTGAGAGCATACT-ATCT
* * *
76778235 ACAGCTCGAGTGAGCATACCTATTT
1 ACAGCTCGTGAGAGCATA-CTATCT
*
76778260 ACAGATCGT-ATGAGCATAC
1 ACAGCTCGTGA-GAGCATAC
76778279 ATGTACATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
24 1 0.03
25 33 0.92
26 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (24 bp):
ACAGCTCGTGAGAGCATACTATCT
Found at i:76781380 original size:25 final size:23
Alignment explanation
Indices: 76781340--76781387 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
76781330 TGCATTATGG
76781340 AAGGAAAATAAAGAAATGAAAAAAA
1 AAGGAAAATAAAGAAA--AAAAAAA
* *
76781365 AAGGAAAATGATGAAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAA
76781388 GAGTGTGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (23 bp):
AAGGAAAATAAAGAAAAAAAAAA
Found at i:76782777 original size:29 final size:29
Alignment explanation
Indices: 76782676--76782767 Score: 166
Period size: 29 Copynumber: 3.2 Consensus size: 29
76782666 GTGACGAGAT
76782676 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76782705 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
76782734 TGGCACTAAGTGTGCATGCTAGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
76782763 CGGCA
1 TGGCA
76782768 TTGGGTGTGC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:76782794 original size:58 final size:58
Alignment explanation
Indices: 76782672--76782806 Score: 157
Period size: 58 Copynumber: 2.3 Consensus size: 58
76782662 TACGGTGACG
* * *
76782672 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTAGAAATATACGGCACTAAGTGTGCATGCTCGAA
* * **
76782729 ATATATGGCACTAAGTGTGCATGCTAGAAATATACGGCATTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTAGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
76782787 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
76782807 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
57 3 0.05
58 61 0.94
59 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTAGAAATATACGGCACTAAGTGTGCATGCTCGAA
Done.