Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 248 of 438
Found at i:76787087 original size:40 final size:40
Alignment explanation
Indices: 76786902--76787087 Score: 232
Period size: 40 Copynumber: 4.7 Consensus size: 40
76786892 GCTACTCGTT
* * *
76786902 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
76786942 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAGTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
76786982 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
76787022 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
*
76787063 CAAA-GCCTTCGGGACTTGGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76787088 CATCATTCGA
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 114 0.89
41 11 0.09
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:76796936 original size:20 final size:20
Alignment explanation
Indices: 76796911--76796948 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76796901 GTTTATTCGC
*
76796911 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
76796931 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
76796949 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:76798608 original size:28 final size:28
Alignment explanation
Indices: 76798576--76798644 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
76798566 GCGTAGATCA
76798576 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
76798604 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
76798632 CGATA-TACCCCTA
1 CGAAATTACCCCTA
76798645 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:76804944 original size:20 final size:20
Alignment explanation
Indices: 76804919--76804956 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76804909 GTTTATTCGC
*
76804919 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
76804939 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
76804957 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:76806616 original size:28 final size:28
Alignment explanation
Indices: 76806584--76806652 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
76806574 GCGTAGATCA
76806584 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
76806612 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
76806640 CGATA-TACCCCTA
1 CGAAATTACCCCTA
76806653 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:76817509 original size:20 final size:20
Alignment explanation
Indices: 76817484--76817521 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76817474 GTTTATTCGC
*
76817484 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
76817504 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
76817522 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:76819180 original size:28 final size:28
Alignment explanation
Indices: 76819148--76819216 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
76819138 GCGTAGATCA
76819148 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
76819176 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
76819204 CGATA-TACCCCTA
1 CGAAATTACCCCTA
76819217 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:76820615 original size:30 final size:30
Alignment explanation
Indices: 76820579--76820638 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
76820569 TACACTCAAG
76820579 GTGTATAAGTTTATAATCAAGGATGTACAT
1 GTGTATAAGTTTATAATCAAGGATGTACAT
76820609 GTGTATAAGTTTATAATCAAGGATGTACAT
1 GTGTATAAGTTTATAATCAAGGATGTACAT
76820639 ACTCATCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (30 bp):
GTGTATAAGTTTATAATCAAGGATGTACAT
Found at i:76821848 original size:27 final size:27
Alignment explanation
Indices: 76821806--76821899 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 27
76821796 ACACAGGGGT
* * *
76821806 AAAACAGTCATCTTACCATAAAAGGTC
1 AAAACAGTCATTTTACCATATAAGGGC
* *
76821833 AAAATAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGC
* *
76821860 AAAACATTCATTTTACCTTATAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGC
*
76821887 AAAATAGTCATTT
1 AAAACAGTCATTT
76821900 CAGTCAATCA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (27 bp):
AAAACAGTCATTTTACCATATAAGGGC
Found at i:76826524 original size:27 final size:27
Alignment explanation
Indices: 76826190--76826513 Score: 372
Period size: 27 Copynumber: 12.0 Consensus size: 27
76826180 TAAAAAACCG
*
76826190 TCGATTTGTAAAATTATCGAGATACCC
1 TCGATTTGTAAAATTATCGAAATACCC
* * * *
76826217 CCGATTTGTGAAATTA-CTAAAACACCC
1 TCGATTTGTAAAATTATC-GAAATACCC
76826244 TCGATTTGTAAAATTATCGAAATACCC
1 TCGATTTGTAAAATTATCGAAATACCC
* *
76826271 CCAATTTGTAAAATTA-CTGAAATACCC
1 TCGATTTGTAAAATTATC-GAAATACCC
* *
76826298 TTGA-TTGTGAAATT-TCTGAAATACCC
1 TCGATTTGTAAAATTATC-GAAATACCC
76826324 TCGATTTGTAAAATT-TCTGAAATACCC
1 TCGATTTGTAAAATTATC-GAAATACCC
* * *
76826351 CCGATTTGTGAAATTATCGAAACACCC
1 TCGATTTGTAAAATTATCGAAATACCC
* * *
76826378 TTGATTTGAAAAATTATTGAAATACCC
1 TCGATTTGTAAAATTATCGAAATACCC
76826405 TCGATTTGTAAAATTATCGAAATACCC
1 TCGATTTGTAAAATTATCGAAATACCC
* * *
76826432 TCGATTTGCAAAATTACCGAAACACCC
1 TCGATTTGTAAAATTATCGAAATACCC
*
76826459 TCGATTTGTAAAATTATCAAAATACCC
1 TCGATTTGTAAAATTATCGAAATACCC
* *
76826486 TTG-TAGTGTAAAATTATCGAAATACCC
1 TCGAT-TTGTAAAATTATCGAAATACCC
76826513 T
1 T
76826514 TGTAGTGTAA
Statistics
Matches: 251, Mismatches: 39, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
26 26 0.10
27 222 0.88
28 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (27 bp):
TCGATTTGTAAAATTATCGAAATACCC
Found at i:76826531 original size:27 final size:27
Alignment explanation
Indices: 76826465--76826555 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 27
76826455 ACCCTCGATT
* *
76826465 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
*
76826492 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
* * *
76826519 TGTAAAGTGATCGACATACCCCTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
*
76826546 GGTAAAATGA
1 TGTAAAATGA
76826556 ATGTTTTGCC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (27 bp):
TGTAAAATGATCGAAATACCCTTGTAG
Found at i:76834020 original size:26 final size:26
Alignment explanation
Indices: 76833878--76834021 Score: 182
Period size: 26 Copynumber: 5.5 Consensus size: 26
76833868 AACACGTCTA
* *
76833878 GAAAGAAAGCCTTTGTGGCATAATAT
1 GAAAGAAAGCTTTTGTGGCGTAATAT
* * *
76833904 GAAACAAAGCCTTTGTGGAGTAATAT
1 GAAAGAAAGCTTTTGTGGCGTAATAT
*
76833930 GAAAGAAAG-TCTTTGTGGCATAATAT
1 GAAAGAAAGCT-TTTGTGGCGTAATAT
*
76833956 GAAAGAAAGCTTTTGTGGTGTAATAT
1 GAAAGAAAGCTTTTGTGGCGTAATAT
* *
76833982 GAAAGAAAACTTTTGTGGTGTAATAT
1 GAAAGAAAGCTTTTGTGGCGTAATAT
*
76834008 GAAAGAATGCTTTT
1 GAAAGAAAGCTTTT
76834022 CAGGAAAATT
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 103 0.99
27 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.31
Consensus pattern (26 bp):
GAAAGAAAGCTTTTGTGGCGTAATAT
Found at i:76836028 original size:39 final size:38
Alignment explanation
Indices: 76835942--76836060 Score: 141
Period size: 39 Copynumber: 3.1 Consensus size: 38
76835932 AACATGTTTT
* *
76835942 TGAGTATTGTGATATATGCTGAAATGTTATGAGATTAAA
1 TGAGTATTGTGATATATGCTG-AATGTTATGTGATTATA
* * *
76835981 TGTA-TATTGTAAAATATGCATGAATGTTATGTGACTATA
1 TG-AGTATTGTGATATATGC-TGAATGTTATGTGATTATA
*
76836020 TGAGTATTGTGATATATGCTTGAATGTTAGGTGATTATA
1 TGAGTATTGTGATATATGC-TGAATGTTATGTGATTATA
76836059 TG
1 TG
76836061 TGTAATAGGA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 63 0.94
40 3 0.04
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.41
Consensus pattern (38 bp):
TGAGTATTGTGATATATGCTGAATGTTATGTGATTATA
Found at i:76836073 original size:39 final size:39
Alignment explanation
Indices: 76835942--76836079 Score: 102
Period size: 39 Copynumber: 3.5 Consensus size: 39
76835932 AACATGTTTT
* * * * *
76835942 TGAGTATTGTGATATATGC-TGAAATGTTATGAGATTAAA
1 TGAGTATAGTGATATATGCTTG-AATGTTAGGTGACTATA
* * * * *
76835981 TGTA-TATTGTAAAATATGCATGAATGTTATGTGACTATA
1 TG-AGTATAGTGATATATGCTTGAATGTTAGGTGACTATA
* *
76836020 TGAGTATTGTGATATATGCTTGAATGTTAGGTGATTATA
1 TGAGTATAGTGATATATGCTTGAATGTTAGGTGACTATA
* *
76836059 TGTGTAATAG-GATATACGCTT
1 TGAGT-ATAGTGATATATGCTT
76836080 AAAACTAAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 75 0.91
40 6 0.07
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41
Consensus pattern (39 bp):
TGAGTATAGTGATATATGCTTGAATGTTAGGTGACTATA
Found at i:76838925 original size:42 final size:42
Alignment explanation
Indices: 76838873--76838975 Score: 109
Period size: 44 Copynumber: 2.4 Consensus size: 42
76838863 CCACTATCCT
* *
76838873 AGACAAGGTCTTACACGAAATC-AAGTACAATGCCCATGTCCC
1 AGACATGGTCTTACACGAAATCAAAGT-CAATGCCAATGTCCC
* * *
76838915 AGACATGGTCTTACACATAAATCATAAGTCGATGGCAATGTCCC
1 AGACATGGTCTTACAC-GAAATCA-AAGTCAATGCCAATGTCCC
**
76838959 AGATGTGGTCTTACACG
1 AGACATGGTCTTACACG
76838976 GCAACACATA
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
42 15 0.30
43 5 0.10
44 26 0.52
45 4 0.08
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCAAAGTCAATGCCAATGTCCC
Found at i:76843312 original size:27 final size:27
Alignment explanation
Indices: 76843187--76843311 Score: 180
Period size: 27 Copynumber: 4.6 Consensus size: 27
76843177 TTAGTTTACC
*
76843187 AATTACTGTTTTA-CCTATGATTTACAG
1 AATTACCGTTTTACCCT-TGATTTACAG
*
76843214 AATTACCGTTTTACCCTTGATTTATAG
1 AATTACCGTTTTACCCTTGATTTACAG
*
76843241 AATTATCGTTTTACCCTTGATTTACAG
1 AATTACCGTTTTACCCTTGATTTACAG
** *
76843268 AATTATTGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTTGATTTACAG
76843295 AATTACCGTTTTACCCT
1 AATTACCGTTTTACCCT
76843312 CAATTGTGAA
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 86 0.97
28 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.44
Consensus pattern (27 bp):
AATTACCGTTTTACCCTTGATTTACAG
Found at i:76843351 original size:27 final size:27
Alignment explanation
Indices: 76843321--76843435 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
76843311 TCAATTGTGA
*
76843321 AATTACTGAAATACCCCTGTAGGGGAG
1 AATTACCGAAATACCCCTGTAGGGGAG
* * *
76843348 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGGAG
* *
76843375 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGGAG
* * * *
76843402 AATTACTGAGATACCCTTGT-GGGGTAA
1 AATTACCGAAATACCCCTGTAGGGG-AG
76843429 AATTACC
1 AATTACC
76843436 ATTTTGCCTC
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 3 0.04
27 70 0.96
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGGAG
Found at i:76843572 original size:21 final size:21
Alignment explanation
Indices: 76843547--76843607 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
76843537 ATATTGTTAT
76843547 ACATGATA-GGACATGATATGC
1 ACATGATATGGA-ATGATATGC
*
76843568 ACATGATATGTAATGATATGC
1 ACATGATATGGAATGATATGC
**
76843589 ACATGATATGCTATGATAT
1 ACATGATATGGAATGATAT
76843608 ACTTATTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 34 0.94
22 2 0.06
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGGAATGATATGC
Found at i:76843573 original size:11 final size:11
Alignment explanation
Indices: 76843547--76843599 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
76843537 ATATTGTTAT
*
76843547 ACATGATA-GG
1 ACATGATATGC
76843557 ACATGATATGC
1 ACATGATATGC
*
76843568 ACATGATATGT
1 ACATGATATGC
76843579 A-ATGATATGC
1 ACATGATATGC
76843589 ACATGATATGC
1 ACATGATATGC
76843600 TATGATATAC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
10 17 0.45
11 21 0.55
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (11 bp):
ACATGATATGC
Found at i:76843712 original size:24 final size:25
Alignment explanation
Indices: 76843655--76843712 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
76843645 AGGAAGTGCG
76843655 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
76843679 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
76843703 AAAAGAGGCT
1 AAAAGAGGCT
76843713 AGGCCTCCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
24 16 0.53
25 14 0.47
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:76844023 original size:33 final size:33
Alignment explanation
Indices: 76843981--76844061 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
76843971 CATTAAACGA
76843981 AAGGCTTCGGCCCAGTATATGTCGAGACTGAAT
1 AAGGCTTCGGCCCAGTATATGTCGAGACTGAAT
*
76844014 AAGGCTTCGGCCTAGTATATGTCGAGACTGAAT
1 AAGGCTTCGGCCCAGTATATGTCGAGACTGAAT
* *
76844047 AGGGCTTTGGCCCAG
1 AAGGCTTCGGCCCAG
76844062 ATTGTACTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (33 bp):
AAGGCTTCGGCCCAGTATATGTCGAGACTGAAT
Found at i:76852787 original size:31 final size:32
Alignment explanation
Indices: 76852730--76852791 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
76852720 ACGAAGTCAC
* *
76852730 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
76852762 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
76852792 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:76859395 original size:71 final size:71
Alignment explanation
Indices: 76859309--76859472 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76859299 CGATTTGTCT
76859309 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76859374 CTTTCA
66 CTTTCA
76859380 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76859445 CTTTCA
66 CTTTCA
76859451 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76859473 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76859510 original size:71 final size:70
Alignment explanation
Indices: 76859309--76859506 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76859299 CGATTTGTCT
* * * *
76859309 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76859374 CTTTCA
65 CTTTCA
* * * *
76859380 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76859445 CTTTCA
65 CTTTCA
* *
76859451 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76859507 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76866453 original size:70 final size:71
Alignment explanation
Indices: 76866314--76866475 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
76866304 CGATTTGTCT
76866314 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76866379 CTTTCA
66 CTTTCA
76866385 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTT-GAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76866449 CTTTCA
66 CTTTCA
76866455 CGTAGCTCTCTTG-CTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76866476 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 8 0.09
70 49 0.54
71 34 0.37
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76866513 original size:70 final size:69
Alignment explanation
Indices: 76866314--76866509 Score: 245
Period size: 70 Copynumber: 2.8 Consensus size: 69
76866304 CGATTTGTCT
* * * *
76866314 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-AC-TCGAATCACACATGCGACCTAGCTACATTTAT
76866379 CTTTCA
64 CTTTCA
* * * *
76866385 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGAATCACGCATGCGACCTAGCTACATTTATC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTCGAATCACACATGCGACCTAGCTACATTTATC
76866450 TTTCA
65 TTTCA
* *
76866455 CGTAGCTCTCTTG-CTACATGG-GATACAT-CTCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTCGAATCACACATGCGACCTAGCTAC
76866510 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
67 23 0.20
68 1 0.01
69 11 0.09
70 50 0.43
71 32 0.27
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.34
Consensus pattern (69 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTCGAATCACACATGCGACCTAGCTACATTTATCT
TTCA
Found at i:76881137 original size:43 final size:44
Alignment explanation
Indices: 76881025--76881173 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 44
76881015 CAATGCTAAC
* *
76881025 GTCCCAGACGTGGTCTTACATGT-AACCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCACT
* *
76881068 ATCCCAGACAGGGTCTTACATG-AAATCAAATA-CGATGCC-CAT
1 GTCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCAC-T
* * *
76881110 GTCCTAGACATGGTCTTACATGTAAATCATAA-GTCGATGGCAAC-
1 GTCCCAGACATGGTCTTACATGTAAATCA-AATATCGAT-GCCACT
**
76881154 GTCCCAGATGTGGTCTTACA
1 GTCCCAGACATGGTCTTACA
76881174 CAATAACACA
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.31
43 33 0.38
44 23 0.26
45 2 0.02
46 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCACT
Found at i:76887442 original size:2 final size:2
Alignment explanation
Indices: 76887435--76887460 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76887425 AAGACATAAC
76887435 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
76887461 TGATTCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76899038 original size:29 final size:29
Alignment explanation
Indices: 76898996--76899055 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
76898986 AAATTCACAT
* *
76898996 ACCTGTATTTGGCCCATTAGGCCCAAATC
1 ACCTGTATGTGGCCCATTAGGCACAAATC
76899025 ACCTGTATGTGGCCCATTAGGCACAAATC
1 ACCTGTATGTGGCCCATTAGGCACAAATC
76899054 AC
1 AC
76899056 ATTTATATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
ACCTGTATGTGGCCCATTAGGCACAAATC
Found at i:76899066 original size:29 final size:29
Alignment explanation
Indices: 76898999--76899066 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
76898989 TTCACATACC
* * *
76898999 TGTATTTGGCCCATTAGGCCCAAATCACC
1 TGTATATGGCCCATTAGGCACAAATCACA
*
76899028 TGTATGTGGCCCATTAGGCACAAATCACA
1 TGTATATGGCCCATTAGGCACAAATCACA
*
76899057 TTTATATGGC
1 TGTATATGGC
76899067 TCGTTATGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCACAAATCACA
Found at i:76899315 original size:8 final size:8
Alignment explanation
Indices: 76899302--76899344 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
76899292 GTAGCCAAAC
76899302 TTTCGGCT
1 TTTCGGCT
*
76899310 TTTCGGCA
1 TTTCGGCT
**
76899318 TTTCAACT
1 TTTCGGCT
*
76899326 TTTCGGCA
1 TTTCGGCT
76899334 TTTCGGCT
1 TTTCGGCT
76899342 TTT
1 TTT
76899345 GCCGATACAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:76899343 original size:16 final size:16
Alignment explanation
Indices: 76899302--76899344 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
76899292 GTAGCCAAAC
76899302 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
**
76899318 TTTCAACTTTTCGGCA
1 TTTCGGCTTTTCGGCA
76899334 TTTCGGCTTTT
1 TTTCGGCTTTT
76899345 GCCGATACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:76906815 original size:18 final size:17
Alignment explanation
Indices: 76906792--76906850 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 17
76906782 TAGCCCATTT
76906792 CAGTAACAGTAATCAGTG
1 CAGTAACA-TAATCAGTG
* *
76906810 CAGTAACCATGATCAATG
1 CAGTAA-CATAATCAGTG
76906828 CAGTAACAATAATCAGTG
1 CAGTAAC-ATAATCAGTG
76906846 CAGTA
1 CAGTA
76906851 TGCAAGCAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
17 1 0.03
18 32 0.91
19 2 0.06
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (17 bp):
CAGTAACATAATCAGTG
Found at i:76907147 original size:23 final size:23
Alignment explanation
Indices: 76907098--76907147 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
76907088 ACCCCATGAA
*
76907098 ATGCAACATAATATTATACATGG
1 ATGCAACAAAATATTATACATGG
76907121 ATGCAACAAACATA-TA-ACATGG
1 ATGCAACAAA-ATATTATACATGG
76907143 CATGC
1 -ATGC
76907148 TCAAATACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.25
23 15 0.62
24 3 0.12
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (23 bp):
ATGCAACAAAATATTATACATGG
Found at i:76907274 original size:54 final size:54
Alignment explanation
Indices: 76907182--76907376 Score: 232
Period size: 54 Copynumber: 3.6 Consensus size: 54
76907172 GAACAAATCT
* * * * *
76907182 GTCATTTTACCTTACCG-GGGTATTACAGTCATTTTACCCTACAAGGGTATTTCG
1 GTCATTTTACCCTA-TGAGGGTATTTCAGTCATTCTACCCTATAAGGGTATTTCG
* * *
76907236 GTCATTCTACCCTATGAGGGTGTTTCAGTCATTCTACCCTATAAGGGTGTTTCG
1 GTCATTTTACCCTATGAGGGTATTTCAGTCATTCTACCCTATAAGGGTATTTCG
* * * * *
76907290 GTCATTTTACCCTA-CAGGGGTATTTTAGTCATCCTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGA-GGGTATTTCAGTCATTCTACCCTATAAGGGTATTTCG
*
76907344 GTCATTTTACCCTATGAGGGTATTTCGGTCATT
1 GTCATTTTACCCTATGAGGGTATTTCAGTCATT
76907377 TTATCACATA
Statistics
Matches: 118, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 2 0.02
54 115 0.97
55 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (54 bp):
GTCATTTTACCCTATGAGGGTATTTCAGTCATTCTACCCTATAAGGGTATTTCG
Found at i:76907321 original size:81 final size:81
Alignment explanation
Indices: 76907199--76907379 Score: 272
Period size: 81 Copynumber: 2.2 Consensus size: 81
76907189 TACCTTACCG
* * * * *
76907199 GGGTATTACAGTCATTTTACCCTACAAGGGTATTTCGGTCATTCTACCCTATGAGGGTGTTTCAG
1 GGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAGTCATCCTACCCTATGAGGGTATTTCAG
76907264 TCATTCTACCCTATAA
66 TCATTCTACCCTATAA
* * *
76907280 GGGTGTTTCGGTCATTTTACCCTACAGGGGTATTTTAGTCATCCTACCCTATGAGGGTATTTCAG
1 GGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAGTCATCCTACCCTATGAGGGTATTTCAG
* *
76907345 TCATTTTACCCTATGA
66 TCATTCTACCCTATAA
76907361 GGGTATTTCGGTCATTTTA
1 GGGTATTTCGGTCATTTTA
76907380 TCACATAAGG
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 89 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.38
Consensus pattern (81 bp):
GGGTATTTCGGTCATTTTACCCTACAAGGGTATTTCAGTCATCCTACCCTATGAGGGTATTTCAG
TCATTCTACCCTATAA
Found at i:76907390 original size:27 final size:27
Alignment explanation
Indices: 76907199--76907379 Score: 209
Period size: 27 Copynumber: 6.7 Consensus size: 27
76907189 TACCTTACCG
* *
76907199 GGGTATTACAGTCATTTTACCCTACAA
1 GGGTATTTCAGTCATTTTACCCTATAA
* * *
76907226 GGGTATTTCGGTCATTCTACCCTATGA
1 GGGTATTTCAGTCATTTTACCCTATAA
* *
76907253 GGGTGTTTCAGTCATTCTACCCTATAA
1 GGGTATTTCAGTCATTTTACCCTATAA
* * * *
76907280 GGGTGTTTCGGTCATTTTACCCTACAG
1 GGGTATTTCAGTCATTTTACCCTATAA
* ** *
76907307 GGGTATTTTAGTCATCCTACCCTATGA
1 GGGTATTTCAGTCATTTTACCCTATAA
*
76907334 GGGTATTTCAGTCATTTTACCCTATGA
1 GGGTATTTCAGTCATTTTACCCTATAA
*
76907361 GGGTATTTCGGTCATTTTA
1 GGGTATTTCAGTCATTTTA
76907380 TCACATAAGG
Statistics
Matches: 130, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 130 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTATAA
Found at i:76913814 original size:71 final size:71
Alignment explanation
Indices: 76913730--76913893 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76913720 CGATTTGTCT
76913730 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76913795 CTTTCA
66 CTTTCA
76913801 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76913866 CTTTCA
66 CTTTCA
76913872 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76913894 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76913931 original size:71 final size:70
Alignment explanation
Indices: 76913730--76913927 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76913720 CGATTTGTCT
* * * *
76913730 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76913795 CTTTCA
65 CTTTCA
* * * *
76913801 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76913866 CTTTCA
65 CTTTCA
* *
76913872 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76913928 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76921389 original size:71 final size:71
Alignment explanation
Indices: 76921305--76921468 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76921295 CGATTTGTCT
76921305 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76921370 CTTTCA
66 CTTTCA
76921376 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76921441 CTTTCA
66 CTTTCA
76921447 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76921469 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76921506 original size:71 final size:70
Alignment explanation
Indices: 76921305--76921502 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76921295 CGATTTGTCT
* * * *
76921305 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76921370 CTTTCA
65 CTTTCA
* * * *
76921376 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76921441 CTTTCA
65 CTTTCA
* *
76921447 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76921503 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76932677 original size:93 final size:92
Alignment explanation
Indices: 76932560--76932729 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 92
76932550 TATTTGTGTA
* * *
76932560 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA-GTGCCAGTGTAAG-CCATGTC
1 CTAGTGTAAGACATGTCTGGGACATGCATCAG-C-TA-CAAGATGTGCCAGTGTAAGACCATGTC
76932623 TGGGACATGGCATCGACATTGAAACAAGAT
63 TGGGACATGGCATCGACATTGAAACAAGAT
* *
76932653 CTAGTGTAAGACATGTTTGGGACATGCATCAGCTACAAGATGTGTCAGTGTAAGACCATGTCTGG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGTGCCAGTGTAAGACCATGTCTGG
76932718 GACATGGCATCG
66 GACATGGCATCG
76932730 GCACGAATAG
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
90 3 0.04
91 14 0.20
92 23 0.33
93 30 0.43
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (92 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGTGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAAACAAGAT
Found at i:76940064 original size:48 final size:49
Alignment explanation
Indices: 76940003--76940134 Score: 162
Period size: 48 Copynumber: 2.7 Consensus size: 49
76939993 GCTATGAGAT
*
76940003 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATTGG-CACGA-ATAGA
1 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATAGA
* * * *
76940050 GGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCCCGATTTCGA
1 -GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATAGA
* *
76940100 -TAGTCAGTGTAAGACCATGTTTGGGACGTGGCATC
1 GT-GTCAGTGTAAGACCATGTCTGGGACATGGCATC
76940135 AGCATTACAC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
48 36 0.49
49 34 0.47
50 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (49 bp):
GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATAGA
Found at i:76953229 original size:40 final size:40
Alignment explanation
Indices: 76953155--76953298 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
76953145 GAGTCACGTA
* **
76953155 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACAACTCGCACAATTG
* ** *
76953194 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACAATTG
*
76953234 CCTTCGGGTCTTAACCCGGATATAACAACTCGCATGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAACAACTCGCA-CAATTG
* *
76953274 CCTTCGGGTCTTAGCCCGAATATAA
1 CCTTCGGGTCTTAACCCGGATATAA
76953299 TCGCTAGCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.13
40 74 0.83
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAACAACTCGCACAATTG
Found at i:76953314 original size:40 final size:40
Alignment explanation
Indices: 76953173--76953331 Score: 131
Period size: 40 Copynumber: 4.0 Consensus size: 40
76953163 ATTTAACCGG
* * * * * *
76953173 ATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGG
1 ATATAACAACTAGCAAAAATGCCTTCGGGTCTTAGCCCGA
* ** * * * * *
76953213 ATTTAGTAACTTGCACAATTGCCTTCGGGTCTTAACCCGG
1 ATATAACAACTAGCAAAAATGCCTTCGGGTCTTAGCCCGA
* **
76953253 ATATAACAACTCGCATGAATGCCTTCGGGTCTTAGCCCGA
1 ATATAACAACTAGCAAAAATGCCTTCGGGTCTTAGCCCGA
* *
76953293 ATATAATC-GCTAGCAAAAATGCCTTCGGGACTTAGCCCG
1 ATATAA-CAACTAGCAAAAATGCCTTCGGGTCTTAGCCCG
76953332 GGTATCATTC
Statistics
Matches: 98, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
40 97 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (40 bp):
ATATAACAACTAGCAAAAATGCCTTCGGGTCTTAGCCCGA
Found at i:76958056 original size:28 final size:29
Alignment explanation
Indices: 76958019--76958109 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
76958009 AAGTCTACAT
* *
76958019 ACATGCATATAACCCACTAGGCCC-AATC
1 ACATTCATATGACCCACTAGGCCCAAATC
* * *
76958047 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGACCCACTAGGCCCAAATC
* *
76958076 ACATTTATATGACCCATCT-GGCCCTAATC
1 ACATTCATATGACCCA-CTAGGCCCAAATC
76958105 A-ATTC
1 ACATTC
76958110 CAAGCCATGT
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
28 22 0.44
29 27 0.54
30 1 0.02
ACGTcount: A:0.31, C:0.32, G:0.11, T:0.26
Consensus pattern (29 bp):
ACATTCATATGACCCACTAGGCCCAAATC
Found at i:76958349 original size:16 final size:16
Alignment explanation
Indices: 76958324--76958358 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76958314 TTAGCCAGAC
*
76958324 TTTTGGCTTTTCAACA
1 TTTTGACTTTTCAACA
*
76958340 TTTTGACTTTTCAGCA
1 TTTTGACTTTTCAACA
76958356 TTT
1 TTT
76958359 CGGGATTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (16 bp):
TTTTGACTTTTCAACA
Found at i:76966243 original size:40 final size:40
Alignment explanation
Indices: 76966142--76966326 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
76966132 TATTCGAATG
* * * *
76966142 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTGACT
* * * *
76966183 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
76966223 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
76966263 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
76966302 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
76966327 CTTGTGCGAG
Statistics
Matches: 121, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 94 0.78
41 26 0.21
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:76974373 original size:40 final size:40
Alignment explanation
Indices: 76974272--76974478 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
76974262 TATTCGAATG
* * * **
76974272 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATG-CGAGTGACT
* * *
76974313 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACT
* * * *
76974353 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACT
* *
76974393 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACT
* *
76974432 CATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTG-CT
1 -ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACT
76974471 ATATCCGG
1 ATATCCGG
76974479 TTAAATCCCG
Statistics
Matches: 141, Mismatches: 23, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
38 8 0.06
39 11 0.08
40 96 0.68
41 26 0.18
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACT
Found at i:76974413 original size:80 final size:79
Alignment explanation
Indices: 76974272--76974492 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 79
76974262 TATTCGAATG
* * *
76974272 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACTATATCCGGACTAAGAT-CCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCT-AGTGACTATATCCGGGCTAAG-TCCCGAAGG
*
76974336 CATTTATGCGAGTTA-C
63 CATTTATGCGAGTGATC
* *
76974352 TATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
*
76974417 ATTTATGCTAGTGATC
64 ATTTATGCGAGTGATC
* * * *
76974433 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTG-CTATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
76974493 TACGTGATTC
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
77 14 0.11
78 8 0.06
79 11 0.09
80 62 0.50
81 29 0.23
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCGAGTGATC
Found at i:76977047 original size:21 final size:20
Alignment explanation
Indices: 76977023--76977083 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 20
76977013 ATTTAGGGCA
76977023 TATGGTTAAGGGTTTAAGGTT
1 TATGGTT-AGGGTTTAAGGTT
***
76977044 TATGAGTTACTATTTAAAGGTT
1 TATG-GTTAGGGTTT-AAGGTT
* *
76977066 TATGATTATGGTTTAAGG
1 TATGGTTAGGGTTTAAGG
76977084 GTTAGGGTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
20 4 0.13
21 14 0.45
22 13 0.42
ACGTcount: A:0.28, C:0.02, G:0.26, T:0.44
Consensus pattern (20 bp):
TATGGTTAGGGTTTAAGGTT
Found at i:76977086 original size:21 final size:22
Alignment explanation
Indices: 76977033--76977083 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
76977023 TATGGTTAAG
76977033 GGTTTAAGGTTTATGAGTTACT
1 GGTTTAAGGTTTATGAGTTACT
*
76977055 -ATTTAAAGGTTTATGA-TTA-T
1 GGTTT-AAGGTTTATGAGTTACT
76977075 GGTTTAAGG
1 GGTTTAAGG
76977084 GTTAGGGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 5 0.20
21 9 0.36
22 11 0.44
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (22 bp):
GGTTTAAGGTTTATGAGTTACT
Found at i:76977094 original size:14 final size:14
Alignment explanation
Indices: 76977075--76977114 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
76977065 TTATGATTAT
76977075 GGTTTAAGGGTTAG
1 GGTTTAAGGGTTAG
76977089 GGTTTAAGGGTTAG
1 GGTTTAAGGGTTAG
* *
76977103 GGGTTAGGGGTT
1 GGTTTAAGGGTT
76977115 CAGTGTAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.47, T:0.35
Consensus pattern (14 bp):
GGTTTAAGGGTTAG
Found at i:76977191 original size:15 final size:15
Alignment explanation
Indices: 76977156--76977197 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
76977146 GTTTTATGGT
*
76977156 TTTAGGGATTAG-GG
1 TTTAGGGATTAGAAG
*
76977170 ATTAGGGATTAGAAG
1 TTTAGGGATTAGAAG
*
76977185 TTTAGGGTTTAGA
1 TTTAGGGATTAGA
76977198 TTAATTAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (15 bp):
TTTAGGGATTAGAAG
Found at i:76977194 original size:7 final size:7
Alignment explanation
Indices: 76977075--76977196 Score: 52
Period size: 7 Copynumber: 17.0 Consensus size: 7
76977065 TTATGATTAT
76977075 GGTTTAAG
1 GGTTT-AG
76977083 GG-TTAG
1 GGTTTAG
76977089 GGTTTAAG
1 GGTTT-AG
76977097 GG-TTAG
1 GGTTTAG
*
76977103 GGGTTAGG
1 GGTTTA-G
*
76977111 GGTTCAG
1 GGTTTAG
* *
76977118 TG-TAAG
1 GGTTTAG
*
76977124 GGTTTAT
1 GGTTTAG
*
76977131 GTTTTAG
1 GGTTTAG
*
76977138 GATTTAAG
1 GGTTT-AG
*
76977146 GTTTTATG
1 GGTTTA-G
*
76977154 GTTTTAG
1 GGTTTAG
*
76977161 GGATTAG
1 GGTTTAG
*
76977168 GGATTAG
1 GGTTTAG
*
76977175 GGATTAG
1 GGTTTAG
*
76977182 AAGTTTAG
1 -GGTTTAG
76977190 GGTTTAG
1 GGTTTAG
76977197 ATTAATTAAT
Statistics
Matches: 90, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
6 12 0.13
7 49 0.54
8 29 0.32
ACGTcount: A:0.22, C:0.01, G:0.38, T:0.39
Consensus pattern (7 bp):
GGTTTAG
Found at i:76981690 original size:39 final size:40
Alignment explanation
Indices: 76981584--76981749 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
76981574 CGGAATATAA
*
76981584 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAATTGCCTTCGGGTCTTAGC
* * *
76981624 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
76981663 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
** * * *
76981703 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
76981742 CCGGATAT
1 CCGGATAT
76981750 CATTCAATTT
Statistics
Matches: 108, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 46 0.43
40 58 0.54
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:76981706 original size:79 final size:79
Alignment explanation
Indices: 76981584--76981749 Score: 212
Period size: 79 Copynumber: 2.1 Consensus size: 79
76981574 CGGAATATAA
* *
76981584 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAAT
76981647 TGCCTTCGGGCTTAGC
64 TGCCTTCGGGCTTAGC
* * ** *
76981663 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATT
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATT
*
76981727 GTCTTCGGGCTTAGC
65 GCCTTCGGGCTTAGC
76981742 CCGGATAT
1 CCGGATAT
76981750 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 4 0.05
79 72 0.95
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTG
CCTTCGGGCTTAGC
Found at i:76982598 original size:17 final size:19
Alignment explanation
Indices: 76982575--76982620 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
76982565 AAGAAGCATG
76982575 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
76982593 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
76982611 AATCATGCTC
1 AATCATGCTC
76982621 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:76989634 original size:40 final size:40
Alignment explanation
Indices: 76989589--76989755 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
76989579 CGGAATATAA
76989589 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
76989629 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
76989669 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
76989709 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76989748 CCGGATAT
1 CCGGATAT
76989756 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76989739 original size:80 final size:79
Alignment explanation
Indices: 76989589--76989755 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
76989579 CGGAATATAA
* *
76989589 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
76989654 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
76989669 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
76989731 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
76989748 CCGGATAT
1 CCGGATAT
76989756 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:76990604 original size:17 final size:19
Alignment explanation
Indices: 76990581--76990626 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
76990571 AAGAAGCATG
76990581 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
76990599 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
76990617 AATCATGCTC
1 AATCATGCTC
76990627 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:76991849 original size:14 final size:15
Alignment explanation
Indices: 76991825--76991853 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
76991815 TGTAGGCTTC
76991825 TATCATTTTCCATAG
1 TATCATTTTCCATAG
76991840 TATC-TTTTCCATAG
1 TATCATTTTCCATAG
76991854 CATTCTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.48
Consensus pattern (15 bp):
TATCATTTTCCATAG
Found at i:76994392 original size:43 final size:41
Alignment explanation
Indices: 76994240--76994404 Score: 111
Period size: 43 Copynumber: 3.9 Consensus size: 41
76994230 TTTCATTATG
* * *
76994240 TGATTTCATGTAAGACCACGTCTGGGACGTTGGAATCGACTTC
1 TGATTACATGTAAGACCACGTCTGGGAAG-TGGCATCGA-TTC
* * * *
76994283 TGTTTTACGTGTAAGACCATGTCTGGGACA-TCGGCATTG-TATC
1 TG-ATTACATGTAAGACCACGTCTGGGA-AGT-GGCATCGAT-TC
* * * *
76994326 TGATTTCGTGTAAAACC-CTGTCTGGGATAGTGGCATCGATGTT
1 TGATTACATGTAAGACCAC-GTCTGGGA-AGTGGCATCGAT-TC
*
76994369 TGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGATTACATGTAAGACCACGTCTGGGAAG-TGGCAT
76994405 TGTATATGTT
Statistics
Matches: 94, Mismatches: 19, Indels: 18
0.72 0.15 0.14
Matches are distributed among these distances:
42 29 0.31
43 38 0.40
44 27 0.29
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (41 bp):
TGATTACATGTAAGACCACGTCTGGGAAGTGGCATCGATTC
Found at i:76994440 original size:31 final size:31
Alignment explanation
Indices: 76994405--76994464 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
76994395 ACGTTGGCAT
76994405 TGTATATGTTCTCTGAGCTATCCACATATGA
1 TGTATATGTTCTCTGAGCTATCCACATATGA
*
76994436 TGTATATGTTCTTTGAGCTATCCACATAT
1 TGTATATGTTCTCTGAGCTATCCACATAT
76994465 CTTTACGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (31 bp):
TGTATATGTTCTCTGAGCTATCCACATATGA
Found at i:77000660 original size:33 final size:28
Alignment explanation
Indices: 77000603--77000658 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
77000593 TATTAAGTGA
77000603 ACATATCATAAGCACATACGTTTTATTT
1 ACATATCATAAGCACATACGTTTTATTT
77000631 ACATATCATAAGCACATACGTTTTATTT
1 ACATATCATAAGCACATACGTTTTATTT
77000659 TAACTAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (28 bp):
ACATATCATAAGCACATACGTTTTATTT
Found at i:77001645 original size:42 final size:41
Alignment explanation
Indices: 77001581--77001714 Score: 146
Period size: 42 Copynumber: 3.2 Consensus size: 41
77001571 CATGTAATCA
77001581 CATAT-CGATGCCACTGTCCCAGACAGGGTCTTACACAAACT
1 CATATACGATGCCA-TGTCCCAGACAGGGTCTTACACAAACT
* *
77001622 CATATACGATGCCGATGTCCCAGACATGGTCTTACACACAAAT
1 CATATACGATGCC-ATGTCCCAGACAGGGTCTTACACA-AACT
* * * *
77001665 CACAAATCGATGCCAACGTCCCAGAC-GTGGTCTTACACGAACT
1 CATATA-CGATGCC-ATGTCCCAGACAG-GGTCTTACACAAACT
77001708 CATATAC
1 CATATAC
77001715 CGGAATCCTA
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
41 5 0.06
42 30 0.39
43 15 0.19
44 27 0.35
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (41 bp):
CATATACGATGCCATGTCCCAGACAGGGTCTTACACAAACT
Found at i:77001676 original size:44 final size:42
Alignment explanation
Indices: 77001553--77001702 Score: 167
Period size: 43 Copynumber: 3.5 Consensus size: 42
77001543 CAATGCTAAC
* ***
77001553 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACAAAATCACATATCGATGCCA-T
* * *
77001596 GTCCCAGACAGGGTCTTACACAAACTCATATA-CGATGCCGAT
1 GTCCCAGACATGGTCTTACACAAAATCACATATCGATGCC-AT
* *
77001638 GTCCCAGACATGGTCTTACACACAAATCACAAATCGATGCCAAC
1 GTCCCAGACATGGTCTTACACA-AAATCACATATCGATGCC-AT
*
77001682 GTCCCAGACGTGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
77001703 GAACTCATAT
Statistics
Matches: 90, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
42 29 0.32
43 33 0.37
44 28 0.31
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACAAAATCACATATCGATGCCAT
Found at i:77001697 original size:86 final size:85
Alignment explanation
Indices: 77001553--77001714 Score: 229
Period size: 86 Copynumber: 1.9 Consensus size: 85
77001543 CAATGCTAAC
* *** *
77001553 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
1 GTCCCAGACATGGTCTTACAACAAATCACAAATCGATGCCACTGTCCCAGACAGGGTCTTACACA
77001618 AACTCATATACGATGCCGAT
66 AACTCATATACGATGCCGAT
77001638 GTCCCAGACATGGTCTTACACACAAATCACAAATCGATGCCAAC-GTCCCAGAC-GTGGTCTTAC
1 GTCCCAGACATGGTCTTACA-ACAAATCACAAATCGATGCC-ACTGTCCCAGACAG-GGTCTTAC
*
77001701 ACGAACTCATATAC
63 ACAAACTCATATAC
77001715 CGGAATCCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 20 0.29
86 46 0.68
87 2 0.03
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACAACAAATCACAAATCGATGCCACTGTCCCAGACAGGGTCTTACACA
AACTCATATACGATGCCGAT
Found at i:77003860 original size:71 final size:67
Alignment explanation
Indices: 77003781--77003922 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
77003771 TCACCAGATA
* * * **
77003781 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCATATTGTAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCATATTACAGCGA
77003846 GGCTGC
62 GGCTGC
* *
77003852 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCATATTACAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCATATTACAGCGAGGCT
77003917 GC
66 GC
77003919 CAGA
1 CAGA
77003923 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.61
71 25 0.39
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCATATTACAGCGAGGCT
GC
Found at i:77004614 original size:26 final size:27
Alignment explanation
Indices: 77004555--77004723 Score: 193
Period size: 27 Copynumber: 6.3 Consensus size: 27
77004545 GGCAAAATGG
* * * *
77004555 TAATTTTACCCCACAAGGGTATCTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
77004581 TTAATTCTACCCTACAGGGGTATTTC-A
1 -TAATTCTACCCTACAGGGGTATTTCGA
* *
77004608 TATTTCTACCCTACAAGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
77004634 GTAATTCTATCCTACA-GGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
* *
77004661 TAATTCTACACTATAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
77004688 TAATTCTACCTTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
77004715 TAATTCTAC
1 TAATTCTAC
77004724 AACTTATCTA
Statistics
Matches: 123, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 45 0.37
27 78 0.63
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:77004624 original size:53 final size:53
Alignment explanation
Indices: 77004555--77004723 Score: 207
Period size: 53 Copynumber: 3.2 Consensus size: 53
77004545 GGCAAAATGG
* * *
77004555 TAATTTTACCCCACAAGGGTATCTCATTAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCA-TAATTCTACCCTACAGGGGTATTTCGA
* * *
77004608 TATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCCTACA-GGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCA-TAATTCTACCCTACAGGGGTATTTCGA
* * * *
77004661 TAATTCTACACTATAGGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTC-ATAATTCTACCCTACAGGGGTATTTCGA
77004715 TAATTCTAC
1 TAATTCTAC
77004724 AACTTATCTA
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
52 9 0.09
53 70 0.71
54 20 0.20
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (53 bp):
TAATTCTACCCTACAAGGGTATTTCATAATTCTACCCTACAGGGGTATTTCGA
Found at i:77012083 original size:73 final size:67
Alignment explanation
Indices: 77011964--77012123 Score: 185
Period size: 67 Copynumber: 2.3 Consensus size: 67
77011954 TACCACAGAA
* * * * *
77011964 ATTGCAGCGAAGCTGCCAGATATTGTGGCTAGGCCACCAGAACAGATATATATATATGTGGCGAA
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAG------ATATATGTAGCGAA
77012029 GCCACCAG
60 GCCACCAG
* * *
77012037 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGGACAGATATATGTAGCGAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAGATATATGTAGCGAAGCCACC
*
77012102 AT
66 AG
77012104 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
77012124 ACGCTTCCTC
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
67 39 0.50
73 39 0.50
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAGATATATGTAGCGAAGCCACC
AG
Found at i:77012390 original size:11 final size:11
Alignment explanation
Indices: 77012374--77012411 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
77012364 TTGGCCCATT
77012374 AGCCCATTTTC
1 AGCCCATTTTC
77012385 AGCCCA--TT-
1 AGCCCATTTTC
77012393 AGCCCATTTTC
1 AGCCCATTTTC
77012404 AGCCCATT
1 AGCCCATT
77012412 AAGCCCAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
8 6 0.25
9 2 0.08
10 2 0.08
11 14 0.58
ACGTcount: A:0.21, C:0.37, G:0.11, T:0.32
Consensus pattern (11 bp):
AGCCCATTTTC
Found at i:77012391 original size:19 final size:19
Alignment explanation
Indices: 77012367--77012418 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
77012357 GGACCCGTTG
77012367 GCCCATTAGCCCATTTTCA
1 GCCCATTAGCCCATTTTCA
77012386 GCCCATTAGCCCATTTTCA
1 GCCCATTAGCCCATTTTCA
77012405 GCCCATTAAGCCCA
1 GCCCATT-AGCCCA
77012419 AAAATACTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 26 0.81
20 6 0.19
ACGTcount: A:0.23, C:0.38, G:0.12, T:0.27
Consensus pattern (19 bp):
GCCCATTAGCCCATTTTCA
Found at i:77012743 original size:26 final size:27
Alignment explanation
Indices: 77012714--77012767 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
77012704 TCACACAAGT
*
77012714 TAGTCATTT-ACGCACAAGGGGCAAAA
1 TAGTCATTTAACACACAAGGGGCAAAA
* * *
77012740 TAGTTATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACAAGGGGCAAAA
77012767 T
1 T
77012768 GGTAATTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
TAGTCATTTAACACACAAGGGGCAAAA
Found at i:77012798 original size:27 final size:27
Alignment explanation
Indices: 77012768--77012940 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
77012758 GGGGCAAAAT
* * * *
77012768 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
77012795 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
77012822 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
77012849 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
77012876 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
77012903 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
77012930 GGTAATTCTAC
1 GGTAATTCTAC
77012941 AACTTATCCA
Statistics
Matches: 132, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:77015170 original size:29 final size:29
Alignment explanation
Indices: 77015107--77015214 Score: 139
Period size: 29 Copynumber: 3.8 Consensus size: 29
77015097 TTCACATACT
* * **
77015107 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACC
*
77015135 T-TCATATGGCCTATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACC
77015164 TGTATATGGCCCATTAGGCCCAAATCACC
1 TGTATATGGCCCATTAGGCCCAAATCACC
*
77015193 TGTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
77015215 GTCACATTTA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.23
29 52 0.74
30 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACC
Found at i:77015227 original size:57 final size:57
Alignment explanation
Indices: 77015107--77015227 Score: 129
Period size: 57 Copynumber: 2.1 Consensus size: 57
77015097 TTCACATACT
* * * *
77015107 TGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCTATTAGGCCCAAATCACC
1 TGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCACA
* * * *
77015164 TGTATATGGCCCATTAGGCCCAAATCACCTGT-ATATGGCCCGTTAGGCCC-AGTCACA
1 TGTATATGGCCCATTAAGCCC-AATCACAT-TCATATGGCCCATTAGGCCCAAATCACA
*
77015221 TTTATAT
1 TGTATAT
77015228 TCATGCTCAC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
57 30 0.57
58 22 0.42
59 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (57 bp):
TGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCACA
Found at i:77018045 original size:27 final size:27
Alignment explanation
Indices: 77017968--77018047 Score: 117
Period size: 27 Copynumber: 2.9 Consensus size: 27
77017958 GATGGAGGGA
77017968 GTATACTGGTGGCTCTGCCACAAATATCT
1 GTAT-CTGGTGGCTCTGCCAC-AATATCT
77017997 GT-TCTGGTGGCTCTGCCACAATATCT
1 GTATCTGGTGGCTCTGCCACAATATCT
* *
77018023 GTATCTGGTGACTCTGTCACAATAT
1 GTATCTGGTGGCTCTGCCACAATAT
77018048 TTTTTTTGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 9 0.19
27 36 0.75
28 1 0.02
29 2 0.04
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
GTATCTGGTGGCTCTGCCACAATATCT
Found at i:77029946 original size:29 final size:28
Alignment explanation
Indices: 77029882--77029995 Score: 122
Period size: 28 Copynumber: 4.0 Consensus size: 28
77029872 TTCACATACC
* * * *
77029882 TGTATCTGGCCCATTAAGCCCGATCATA
1 TGTATATGGCCCATTAGGCCCAATCACA
*
77029910 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCC-AATCACA
77029939 TGTATATGGCCCATTAGGCCCAATCACA
1 TGTATATGGCCCATTAGGCCCAATCACA
* ** *
77029967 TTTATATGGCCTGTTAGGCCCAGTCACA
1 TGTATATGGCCCATTAGGCCCAATCACA
77029995 T
1 T
77029996 TCATATTCAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.01
28 48 0.66
29 23 0.32
30 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (28 bp):
TGTATATGGCCCATTAGGCCCAATCACA
Found at i:77029949 original size:57 final size:57
Alignment explanation
Indices: 77029879--77029988 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 57
77029869 AAATTCACAT
* * *
77029879 ACCTGTATCTGGCCCATTAAGCCCGATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * **
77029936 ACCTGTATATGGCCCATTAGGCCCAATCACATTTATATGGCCTGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCA
77029989 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:77030237 original size:16 final size:16
Alignment explanation
Indices: 77030216--77030246 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77030206 CCAAACTTTT
*
77030216 GGCTTTTCGGCATTTC
1 GGCTTTTCAGCATTTC
77030232 GGCTTTTCAGCATTT
1 GGCTTTTCAGCATTT
77030247 TGACATTTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.45
Consensus pattern (16 bp):
GGCTTTTCAGCATTTC
Found at i:77030900 original size:52 final size:50
Alignment explanation
Indices: 77030838--77030937 Score: 128
Period size: 52 Copynumber: 2.0 Consensus size: 50
77030828 AGAGAAATAA
* * *
77030838 AGAAATCGGCACAAGGAAAATAAAAAAGAGAACAAGGGTTTTCGACTTTTGG
1 AGAAATCGGCACAAAGAAAAGAAAAAA-ACAA-AAGGGTTTTCGACTTTTGG
* * *
77030890 AGAAATCGGCAGAAAGAAAGGAAGAAAACAAAAGGGTTTTCGACTTTT
1 AGAAATCGGCACAAAGAAAAGAAAAAAACAAAAGGGTTTTCGACTTTT
77030938 AGGGAAAAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 17 0.40
51 3 0.07
52 22 0.52
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.19
Consensus pattern (50 bp):
AGAAATCGGCACAAAGAAAAGAAAAAAACAAAAGGGTTTTCGACTTTTGG
Found at i:77034192 original size:48 final size:48
Alignment explanation
Indices: 77034074--77034213 Score: 178
Period size: 48 Copynumber: 2.9 Consensus size: 48
77034064 TGAGATTAGA
* * *
77034074 GCCAGTGTAAAACCATGTCTAGGACATGGCATC-GCATTGATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTAT
* *
77034121 GCCAGTGTAAGACTATGTCTGGGACATGGCATCGGTGA-TGATATGTAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGTAT
* *
77034169 GCCCA-TGTAAGACCATGTTTGGGACATGGCATCGGCACTGATATG
1 G-CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATG
77034214 AGGTTTCGTA
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
47 31 0.38
48 46 0.57
49 4 0.05
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTAT
Found at i:77036123 original size:16 final size:17
Alignment explanation
Indices: 77036090--77036124 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
77036080 GTATCCCAAG
77036090 CCACACGGGCGTGTGTGA
1 CCACACGGGCG-GTGTGA
77036108 CCACACGGGC-GTGTGA
1 CCACACGGGCGGTGTGA
77036124 C
1 C
77036125 TCTCTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.31, G:0.37, T:0.14
Consensus pattern (17 bp):
CCACACGGGCGGTGTGA
Found at i:77037280 original size:40 final size:40
Alignment explanation
Indices: 77037182--77037329 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
77037172 CGAATTCTGA
* * *
77037182 CACACTAAGTACCAATACATAGCCAAAGCAAT-TTTAATCTCG
1 CACACTAAGTGCC-ATACATAGCCAAAGCTATCTTGAA--TCG
**
77037224 CACACTAAGTTTCATACATAGCCAAAGCTATCTTGAATCG
1 CACACTAAGTGCCATACATAGCCAAAGCTATCTTGAATCG
* *
77037264 CATACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCG
1 CACACTAAGTGCCATACATAGCCAAAGCTATCTTGAATCG
* **
77037304 TACACTAAGTGCTGTACATAGCCAAA
1 CACACTAAGTGCCATACATAGCCAAA
77037330 TTGTTGTCAA
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
40 60 0.65
41 17 0.18
42 15 0.16
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCAAAGCTATCTTGAATCG
Found at i:77044898 original size:40 final size:40
Alignment explanation
Indices: 77044819--77044981 Score: 210
Period size: 40 Copynumber: 4.1 Consensus size: 40
77044809 TAGGATTTAA
* *
77044819 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
77044858 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77044898 CCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77044938 CC-GA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
77044978 CCGG
1 CCGG
77044982 TTATCATCCA
Statistics
Matches: 112, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
38 2 0.02
39 25 0.22
40 80 0.71
41 5 0.04
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77049494 original size:79 final size:79
Alignment explanation
Indices: 77049362--77049539 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
77049352 AAGCCAAGTA
* * * *
77049362 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCGGATA-TAG
1 CCTTCGGGACTTAGCCCGGATATA-CTACTCGCACAATGCCTTCGGGACATAGCCCGGAAACTAG
*
77049425 TAACT-CGCACCAATG
65 TAACTACGCA-AAATG
*
77049440 CCTTCGGGACTTAGCCCGGATATA-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAACTA
1 CCTTCGGGACTTAGCCCGGATATACT-ACTCGCAC-AATGCCTTCGGGACATAGCCCGGAAACTA
*
77049504 GTCACTAGCGCAAAATG
64 GTAACTA-CGCAAAATG
77049521 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77049540 TTATCATCCA
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
77 1 0.01
78 19 0.22
79 33 0.38
80 7 0.08
81 23 0.26
82 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATACTACTCGCACAATGCCTTCGGGACATAGCCCGGAAACTAGT
AACTACGCAAAATG
Found at i:77049533 original size:42 final size:40
Alignment explanation
Indices: 77049362--77049539 Score: 222
Period size: 39 Copynumber: 4.5 Consensus size: 40
77049352 AAGCCAAGTA
* * *
77049362 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77049400 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77049440 CCTTCGGGACTTAGCCCGGATATA-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77049479 CCTTCGGGACTTAGCCCGGAAACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
77049521 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77049540 TTATCATCCA
Statistics
Matches: 125, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 12 0.10
39 52 0.42
40 29 0.23
41 4 0.03
42 24 0.19
43 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77057534 original size:40 final size:40
Alignment explanation
Indices: 77057441--77057619 Score: 215
Period size: 41 Copynumber: 4.5 Consensus size: 40
77057431 AAGCCAAGTA
* * *
77057441 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77057479 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77057519 CCTTCGGGACTTAGCCCGGAATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
*
77057560 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
77057601 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77057620 TTATCATCCA
Statistics
Matches: 125, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
38 12 0.10
39 18 0.14
40 29 0.23
41 62 0.50
42 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77057575 original size:81 final size:80
Alignment explanation
Indices: 77057467--77057619 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 80
77057457 GGATATAGCT
* *
77057467 ACTCGCTCAATGCCTTCGGGACATAGCCCGGATA-TAGTAACT-CGCACCAATGCCTTCGGGACT
1 ACTCGCACAATGCCTTCGGGACATAGCCCGGA-ACTAGTAACTACGCA-AAATGCCTTCGGGACT
77057530 TAGCCCGGAATATAATA
64 TAGCCCGGAATATAATA
* *
77057547 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAAATGCCTTCGGGACT
1 ACTCGCAC-AATGCCTTCGGGACATAGCCCGGAACTAGTAACTA-CGCAAAATGCCTTCGGGACT
77057612 TAGCCCGG
64 TAGCCCGG
77057620 TTATCATCCA
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
80 8 0.12
81 30 0.46
82 23 0.35
83 4 0.06
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (80 bp):
ACTCGCACAATGCCTTCGGGACATAGCCCGGAACTAGTAACTACGCAAAATGCCTTCGGGACTTA
GCCCGGAATATAATA
Found at i:77061855 original size:93 final size:93
Alignment explanation
Indices: 77061748--77061919 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
77061738 GCCAATAAGT
* *
77061748 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
77061813 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* *
77061841 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
77061906 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
77061920 CAAACATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:77061915 original size:46 final size:46
Alignment explanation
Indices: 77061742--77061915 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
77061732 TAACCCGCCA
* * *
77061742 ATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCC
* *
77061788 ATAAGTGAACTCAGACTCAACTCAACGAGCTT-GG--ATGC-CTAGTTAC
1 ATAAGTGAACTCAGACTCAACTCAACGAG-TTCGGACATTCGC-A--TCC
***
77061834 ATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGT-GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCC
*
77061881 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
77061916 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCC
Found at i:77071375 original size:32 final size:33
Alignment explanation
Indices: 77071315--77071378 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
77071305 CTATGGGCCA
77071315 TACTGTTATCTGAAAAAGGGCTAAGGCCCAGTT
1 TACTGTTATCTGAAAAAGGGCTAAGGCCCAGTT
**
77071348 TACTG-TATTCTG-AAAAGGGCTTCGGCCCAGT
1 TACTGTTA-TCTGAAAAAGGGCTAAGGCCCAGT
77071379 ACCCGCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 19 0.68
33 9 0.32
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (33 bp):
TACTGTTATCTGAAAAAGGGCTAAGGCCCAGTT
Found at i:77074323 original size:46 final size:45
Alignment explanation
Indices: 77074256--77074430 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
77074246 TGTAACCCGC
77074256 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGCTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGC-CTCGCAT
* * *
77074302 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--GCCTCGCAT
* *** * * *
77074348 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGGC-CTCGCAT
* *
77074395 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
77074431 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.65
47 34 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCCTCGCAT
Found at i:77074371 original size:93 final size:93
Alignment explanation
Indices: 77074264--77074435 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
77074254 GCCCATAAGT
* *
77074264 GAACTCAGACTCAACTCAACGAGCTCGGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77074329 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
77074357 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
77074422 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
77074436 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:77074450 original size:46 final size:44
Alignment explanation
Indices: 77074261--77074450 Score: 118
Period size: 46 Copynumber: 4.1 Consensus size: 44
77074251 CCCGCCCATA
* * ** * **
77074261 AGTGAACTCAGACTCAACTCAACGAGCTCGGGCGCTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
77074306 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
77074356 --CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
77074399 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
77074446 AGTGA
1 AGTGA
77074451 CATGTCACTT
Statistics
Matches: 112, Mismatches: 17, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
46 64 0.57
47 27 0.24
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:77076857 original size:30 final size:30
Alignment explanation
Indices: 77076813--77076901 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
77076803 CAAAGATAAC
77076813 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
77076842 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
77076872 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
77076902 TGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:77076861 original size:15 final size:15
Alignment explanation
Indices: 77076813--77076892 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
77076803 CAAAGATAAC
*
77076813 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
77076827 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
77076842 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
77076857 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
77076872 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
77076887 AAGAAA
1 AAGAAA
77076893 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:77076901 original size:15 final size:15
Alignment explanation
Indices: 77076824--77076901 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
77076814 AGAAAACCGA
77076824 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
77076839 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
77076853 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
77076868 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
77076884 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
77076899 ATA
1 ATA
77076902 TGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:77079098 original size:39 final size:39
Alignment explanation
Indices: 77078980--77079162 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
77078970 TCGTTCAAAC
* * ** * **
77078980 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
77079020 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
77079060 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
77079099 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
77079138 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
77079163 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:77083126 original size:46 final size:46
Alignment explanation
Indices: 77083059--77083228 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
77083049 TGTAACCCGC
*
77083059 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGTGTTCGCAT
* * * *
77083105 CCATAAGTGAACTTGGACTCAACTCAACGAGCTC-GGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-TG-TTCGCAT
* *** * ***
77083151 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGGTGTTCGCAT
*
77083198 CCATAAGTGAACTCGGACTCAACTTAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
77083229 TTCGGATGCC
Statistics
Matches: 97, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 63 0.65
47 31 0.32
48 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGTGTTCGCAT
Found at i:77083180 original size:93 final size:93
Alignment explanation
Indices: 77083067--77083238 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
77083057 GCCCATAAGT
*** *
77083067 GAACTCAGACTCAACTCAACGAGCTCAGGTGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77083132 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
77083160 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
77083225 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
77083239 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:77087278 original size:71 final size:71
Alignment explanation
Indices: 77087194--77087357 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77087184 CGATTTGTCT
77087194 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77087259 CTTTCA
66 CTTTCA
77087265 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77087330 CTTTCA
66 CTTTCA
77087336 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77087358 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77087395 original size:71 final size:70
Alignment explanation
Indices: 77087194--77087391 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77087184 CGATTTGTCT
* * * *
77087194 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77087259 CTTTCA
65 CTTTCA
* * * *
77087265 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77087330 CTTTCA
65 CTTTCA
* *
77087336 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77087392 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77094414 original size:71 final size:71
Alignment explanation
Indices: 77094298--77094461 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77094288 CGATTTGTCT
77094298 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77094363 CTTTCA
66 CTTTCA
77094369 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77094434 CTTTCA
66 CTTTCA
77094440 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77094462 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77094499 original size:71 final size:70
Alignment explanation
Indices: 77094298--77094495 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77094288 CGATTTGTCT
* * * *
77094298 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77094363 CTTTCA
65 CTTTCA
* * * *
77094369 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77094434 CTTTCA
65 CTTTCA
* *
77094440 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77094496 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77100214 original size:70 final size:71
Alignment explanation
Indices: 77100128--77100289 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
77100118 CGATTTGTCT
77100128 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77100192 CTTTCA
66 CTTTCA
77100198 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77100263 CTTTCA
66 CTTTCA
77100269 CGTAGCTCTC-TGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77100290 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
70 63 0.69
71 28 0.31
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77107320 original size:71 final size:71
Alignment explanation
Indices: 77107236--77107399 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77107226 CGATTTGTCT
77107236 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77107301 CTTTCA
66 CTTTCA
77107307 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77107372 CTTTCA
66 CTTTCA
77107378 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77107400 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77107437 original size:71 final size:70
Alignment explanation
Indices: 77107236--77107433 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77107226 CGATTTGTCT
* * * *
77107236 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77107301 CTTTCA
65 CTTTCA
* * * *
77107307 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77107372 CTTTCA
65 CTTTCA
* *
77107378 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77107434 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77114433 original size:71 final size:71
Alignment explanation
Indices: 77114349--77114512 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77114339 CGATTTGTCT
77114349 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77114414 CTTTCA
66 CTTTCA
77114420 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77114485 CTTTCA
66 CTTTCA
77114491 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77114513 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77114550 original size:71 final size:70
Alignment explanation
Indices: 77114349--77114546 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77114339 CGATTTGTCT
* * * *
77114349 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77114414 CTTTCA
65 CTTTCA
* * * *
77114420 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77114485 CTTTCA
65 CTTTCA
* *
77114491 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77114547 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77127105 original size:52 final size:51
Alignment explanation
Indices: 77126978--77127107 Score: 183
Period size: 49 Copynumber: 2.6 Consensus size: 51
77126968 TGTGTTCTGG
* *
77126978 ATTAAATAAAGTCATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATC
1 ATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTGCATC
* * *
77127029 A-T-AATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATT
1 ATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTT-AAGTTTGCATC
*
77127079 ATTAAATTAAGTCATGCATTAAGTAACTC
1 ATTAAATTAAGTCATGCATTATGTAACTC
77127108 ATTTGTTCAT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 32 0.47
50 12 0.18
51 2 0.03
52 22 0.32
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (51 bp):
ATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTGCATC
Found at i:77128374 original size:16 final size:15
Alignment explanation
Indices: 77128350--77128380 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
77128340 AATATAAAAA
77128350 AAAATAAAAAAAATT
1 AAAATAAAAAAAATT
77128365 AAAATGAAAAAAAATT
1 AAAAT-AAAAAAAATT
77128381 CGAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAATAAAAAAAATT
Found at i:77130981 original size:29 final size:29
Alignment explanation
Indices: 77130949--77131044 Score: 129
Period size: 29 Copynumber: 3.3 Consensus size: 29
77130939 AACTCTACAT
* *
77130949 ACATGCATATGGCCCACTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
**
77130978 ACATTTGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
**
77131007 ACATTTGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
77131036 ACATCCATA
1 ACATTCATA
77131045 CATGCTTTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:77135735 original size:46 final size:45
Alignment explanation
Indices: 77135668--77135832 Score: 174
Period size: 46 Copynumber: 3.6 Consensus size: 45
77135658 CGCCCCTAAG
*
77135668 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
77135714 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * * *
77135761 CGAACTCGGACTCAACTCAAAGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
77135807 TGAACTCGGACTCAACTCAACGAGTT
1 TGAACTCGGACTCAACTCAACGAGTT
77135833 TGGATGCTCA
Statistics
Matches: 99, Mismatches: 12, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 52 0.53
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:77135828 original size:93 final size:93
Alignment explanation
Indices: 77135669--77135839 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
77135659 GCCCCTAAGT
* * *
77135669 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77135734 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
77135762 GAACTCGGACTCAACTCAAAGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
77135827 CGAGTTTGGATGC
66 CGAGTTCGGATGC
77135840 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77137782 original size:29 final size:29
Alignment explanation
Indices: 77137749--77137850 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
77137739 TGAATGTGAC
*
77137749 TGGGCCTAACGGGCCATATAAATATGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
*
77137778 TGGGCCTAATGGGCCATATACAA-GTGATT
1 TGGGCCTAATGGGCCATATA-AATATGATT
* * *
77137807 TAGGCCTAATGGCCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
*
77137835 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
77137851 GATACAAGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
28 16 0.26
29 44 0.71
30 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:77137845 original size:28 final size:29
Alignment explanation
Indices: 77137736--77137850 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
77137726 GTGAGCATGA
* * *
77137736 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
77137764 ATATAAATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* *
77137793 ATAT-ACA-AGTGATTTAGGCCTAATGGCCC
1 ATATGA-ATA-TGATTTGGGCCTAATGGGCC
*
77137822 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
77137850 A
1 A
77137851 GATACAAGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
28 26 0.36
29 45 0.62
30 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:77137857 original size:57 final size:58
Alignment explanation
Indices: 77137751--77137859 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
77137741 AATGTGACTG
* *
77137751 GGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCATATACAAGTGATTTA
1 GGCCTAACGGCCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAAGTGATTTA
* * *
77137809 GGCCTAATGGCCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAAGT
1 GGCCTAACGGCCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAAGT
77137860 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 24 0.52
58 22 0.48
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (58 bp):
GGCCTAACGGCCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAAGTGATTTA
Done.