Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 249 of 438
Found at i:77144509 original size:16 final size:16
Alignment explanation
Indices: 77144473--77144540 Score: 57
Period size: 16 Copynumber: 4.3 Consensus size: 16
77144463 TATGAATCGA
*
77144473 CAAAA-GCCGAAATGC
1 CAAAATGCCGAAAAGC
77144488 CAAAATGCCGAAAAGC
1 CAAAATGCCGAAAAGC
* * **
77144504 CGAAATACTAAAAAGC
1 CAAAATGCCGAAAAGC
* *
77144520 TAAAATACCGAAAAGC
1 CAAAATGCCGAAAAGC
*
77144536 TAAAA
1 CAAAA
77144541 GTTTGGCTAC
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
15 5 0.12
16 38 0.88
ACGTcount: A:0.54, C:0.21, G:0.15, T:0.10
Consensus pattern (16 bp):
CAAAATGCCGAAAAGC
Found at i:77144832 original size:28 final size:28
Alignment explanation
Indices: 77144754--77144834 Score: 92
Period size: 29 Copynumber: 2.9 Consensus size: 28
77144744 AGCATGAATG
** *
77144754 TGAATATGGCTGGGCCTAACGGGCCATA
1 TGAATATGATTGGGCCTAATGGGCCATA
*
77144782 T-AAAAGTGATTTGGGCCTAATGGGCCATA
1 TGAATA-TGA-TTGGGCCTAATGGGCCATA
*
77144811 TGAATATGATTGGGCTTAATGGGC
1 TGAATATGATTGGGCCTAATGGGC
77144835 TAGGTACAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
27 3 0.07
28 17 0.39
29 21 0.48
30 3 0.07
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (28 bp):
TGAATATGATTGGGCCTAATGGGCCATA
Found at i:77153061 original size:46 final size:46
Alignment explanation
Indices: 77152964--77153054 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
77152954 GAGTCTTAAG
* * *
77152964 GCCCAATTTTTGACCCATGGATGCAATGGGTTCACGCTACCTCAAA
1 GCCCAATTATAGACCCATGGATGCAATGGGTTCACACTACCTCAAA
*
77153010 GCCCAATTATAGACCCATGGATGTAATGGGTTCACACTACCTCAA
1 GCCCAATTATAGACCCATGGATGCAATGGGTTCACACTACCTCAA
77153055 GACCCAACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (46 bp):
GCCCAATTATAGACCCATGGATGCAATGGGTTCACACTACCTCAAA
Found at i:77153929 original size:23 final size:21
Alignment explanation
Indices: 77153890--77153931 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
77153880 GTACTTAAGT
77153890 ACATTTTGTTGCATTTTTAGC
1 ACATTTTGTTGCATTTTTAGC
77153911 ACATTTTAGTTAGCATTTTTA
1 ACATTTT-GTT-GCATTTTTA
77153932 ATATTGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (21 bp):
ACATTTTGTTGCATTTTTAGC
Found at i:77157528 original size:39 final size:40
Alignment explanation
Indices: 77157474--77157557 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
77157464 AACCCAAGTA
* *
77157474 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGATTTAGCCCGGATATAGTCAA-TAGCACAAAAG
77157513 CCTTCGGG-TCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGAT-TTAGCCCGGATATAGTCAATAGCACAAAAG
77157553 CCTTC
1 CCTTC
77157558 ATAGTCACTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
38 1 0.03
39 12 0.30
40 24 0.60
41 3 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGATTTAGCCCGGATATAGTCAATAGCACAAAAG
Found at i:77157561 original size:24 final size:24
Alignment explanation
Indices: 77157534--77157581 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
77157524 TAGCCCGGAT
77157534 ATAGTCAATAGCACAAAAGCCTTC
1 ATAGTCAATAGCACAAAAGCCTTC
* *
77157558 ATAGTCACTAGCACAAATGCCTTC
1 ATAGTCAATAGCACAAAAGCCTTC
77157582 GGGACTTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (24 bp):
ATAGTCAATAGCACAAAAGCCTTC
Found at i:77157613 original size:40 final size:40
Alignment explanation
Indices: 77157558--77157671 Score: 210
Period size: 40 Copynumber: 2.9 Consensus size: 40
77157548 AAAAGCCTTC
*
77157558 ATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGAAT
1 ATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGAAT
*
77157598 ATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 ATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGAAT
77157638 ATAGTCAATAGCACAAATGCCTTCGGGACTTAGC
1 ATAGTCAATAGCACAAATGCCTTCGGGACTTAGC
77157672 TCAGATATCA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (40 bp):
ATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGAAT
Found at i:77157653 original size:104 final size:103
Alignment explanation
Indices: 77157474--77157661 Score: 306
Period size: 104 Copynumber: 1.8 Consensus size: 103
77157464 AACCCAAGTA
* * * *
77157474 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGAATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
77157539 CAATAGCACAAAAGCCTTCATAGTCACTAGCACAAATG
66 CAATAGCACAAAAGCCTTCATAGTCACTAGCACAAATG
77157577 CCTTCGGGACTTAGCCCGAATATAGTCAA-TAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAG-CCGAATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
77157641 GTCAATAGCACAAATGCCTTC
64 GTCAATAGCACAAAAGCCTTC
77157662 GGGACTTAGC
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
103 13 0.17
104 62 0.79
105 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (103 bp):
CCTTCGGGACTTAGCCGAATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAAAGCCTTCATAGTCACTAGCACAAATG
Found at i:77160385 original size:78 final size:80
Alignment explanation
Indices: 77160266--77160446 Score: 228
Period size: 78 Copynumber: 2.3 Consensus size: 80
77160256 TACTCGTTCA
* *
77160266 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC--GATCTTAACCCGG
*
77160329 ATTTAATAAC-TCGCAC
64 ATTTAATAACTTAGCAC
* **
77160345 CATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGATCTTAACCCGGAT
* *
77160408 TTAGTCACTTAGCAC
66 TTAATAACTTAGCAC
*
77160423 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77160447 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
76 2 0.02
77 16 0.18
78 47 0.53
79 23 0.26
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGATCTTAACCCGGAT
TTAATAACTTAGCAC
Found at i:77160446 original size:40 final size:40
Alignment explanation
Indices: 77160264--77160446 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
77160254 GCTACTCGTT
*
77160264 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
77160304 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
77160344 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
77160382 CAAATGCCTTC--GATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
77160422 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77160447 CATCATTCGA
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
37 1 0.01
38 23 0.19
39 42 0.34
40 53 0.43
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77168534 original size:78 final size:81
Alignment explanation
Indices: 77168415--77168596 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 81
77168405 TACTCGTTCA
* *
77168415 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
77168478 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
* **
77168494 CATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
77168557 TTTAGTCACTTAGCAC
66 TTTAATAACTTAGCAC
*
77168573 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77168597 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.54
79 27 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCAC
Found at i:77168596 original size:40 final size:40
Alignment explanation
Indices: 77168413--77168596 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
77168403 GCTACTCGTT
*
77168413 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
77168453 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
77168493 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
77168531 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
77168572 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77168597 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 25 0.20
39 19 0.15
40 68 0.54
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77171137 original size:37 final size:37
Alignment explanation
Indices: 77171082--77171202 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
77171072 TATAAAAGAA
*
77171082 GTCTTA-CCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
77171118 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
77171155 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
77171192 GTCTCACCCGG
1 GTCTTACCCGG
77171203 AACATATTCC
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
36 6 0.07
37 76 0.93
ACGTcount: A:0.21, C:0.33, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:77171359 original size:49 final size:49
Alignment explanation
Indices: 77171304--77171518 Score: 385
Period size: 49 Copynumber: 4.4 Consensus size: 49
77171294 TTTTACATTA
77171304 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
77171353 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
77171402 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
77171451 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
77171500 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
77171519 CATATATGTA
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 160 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:77179406 original size:79 final size:80
Alignment explanation
Indices: 77179263--77179470 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
77179253 ACCTTCGGAG
* * ** * * * *
77179263 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
77179327 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
77179342 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
77179404 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
77179421 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
77179471 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:77179415 original size:40 final size:40
Alignment explanation
Indices: 77179363--77179470 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
77179353 TATCACGATT
** *
77179363 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
77179403 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
77179443 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
77179471 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:77184517 original size:40 final size:40
Alignment explanation
Indices: 77184443--77184623 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
77184433 AACCCAAGTA
* *
77184443 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
77184482 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
77184522 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
77184562 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
77184602 CCTTCGGGACTTAG-CCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
77184624 CATTCGAATA
Statistics
Matches: 132, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
39 20 0.15
40 109 0.83
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:77191432 original size:262 final size:262
Alignment explanation
Indices: 77191094--77191627 Score: 998
Period size: 262 Copynumber: 2.0 Consensus size: 262
77191084 CCCCACACAG
* *
77191094 TTGAGACACACAGCCGTGTCTTTGCCCGTATGGTTAACACTTAGGCTATTTTCCAATCCTTTATG
1 TTGAGACACACAGCCGTGTCTCTGCCCGTATGGTTAACACTTAGGCTATTTTCCAAGCCTTTATG
*
77191159 TTACCCTTAATCCTTCACATCTTTATACATACTAATAACACATATCATGACATCATTTTAATGAT
66 TTACCCTTAATCCTTCACATCTTTATACATACTAAGAACACATATCATGACATCATTTTAATGAT
*
77191224 TTATCATCTCATATTAAGACACATTCATAACATTAATGCCAACAATATATGGCCAACAAGCATAA
131 TTAGCATCTCATATTAAGACACATTCATAACATTAATGCCAACAATATATGGCCAACAAGCATAA
*
77191289 TCACACCACCTTATCACAAGCATTAGAACATAGCATAGATAGATAGGTTCACAAACCATAATCAA
196 TCACACCACCTTATCACAAGCATTAAAACATAGCATAGATAGATAGGTTCACAAACCATAATCAA
77191354 AA
261 AA
*
77191356 TTGAGACACACAGCCGTGTCTCTGCCCGTGTGGTTAACACTTAGGCTATTTTCCAAGCCTTTATG
1 TTGAGACACACAGCCGTGTCTCTGCCCGTATGGTTAACACTTAGGCTATTTTCCAAGCCTTTATG
77191421 TTACCCTTAATCCTTCACATCTTTATACATACTAAGAACACATATCATGACATCATTTTAATGAT
66 TTACCCTTAATCCTTCACATCTTTATACATACTAAGAACACATATCATGACATCATTTTAATGAT
77191486 TTAGCATCTCATATTAAGACACATTCATAACATTAATGCCAACAATATATGGCCAACAAGCATAA
131 TTAGCATCTCATATTAAGACACATTCATAACATTAATGCCAACAATATATGGCCAACAAGCATAA
77191551 TCACACCACCTTATCACAAGCATTAAAACATAGCATAGATAGATAGGTTCACAAACCATAATCAA
196 TCACACCACCTTATCACAAGCATTAAAACATAGCATAGATAGATAGGTTCACAAACCATAATCAA
77191616 AA
261 AA
*
77191618 -TAAGACACAC
1 TTGAGACACAC
77191628 CTCTTGGCCA
Statistics
Matches: 265, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
261 9 0.03
262 256 0.97
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (262 bp):
TTGAGACACACAGCCGTGTCTCTGCCCGTATGGTTAACACTTAGGCTATTTTCCAAGCCTTTATG
TTACCCTTAATCCTTCACATCTTTATACATACTAAGAACACATATCATGACATCATTTTAATGAT
TTAGCATCTCATATTAAGACACATTCATAACATTAATGCCAACAATATATGGCCAACAAGCATAA
TCACACCACCTTATCACAAGCATTAAAACATAGCATAGATAGATAGGTTCACAAACCATAATCAA
AA
Found at i:77192997 original size:25 final size:25
Alignment explanation
Indices: 77192963--77193013 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
77192953 ATCCATTAAG
77192963 TCGATGTCATGTCCCAGACATGATC
1 TCGATGTCATGTCCCAGACATGATC
77192988 TCGATGTCATGTCCCAGACATGATC
1 TCGATGTCATGTCCCAGACATGATC
77193013 T
1 T
77193014 TACACTGACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (25 bp):
TCGATGTCATGTCCCAGACATGATC
Found at i:77193068 original size:49 final size:47
Alignment explanation
Indices: 77192988--77193303 Score: 213
Period size: 49 Copynumber: 6.7 Consensus size: 47
77192978 AGACATGATC
* * *
77192988 TCGATGTCATGTCCCAGACATGATCTTACACTGACTATTATA-ATCGAGG
1 TCGATG-CATGTCCCAGACATGGTCTTACACTGAC-ATCACATATC-AGG
* * *
77193037 TCGACGCAATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCAGTG
1 TCGATGC-ATGTCCCAGACATGGTCTTACACTGAC-ATCACATATCAG-G
* *
77193087 TC-ATGCGATGTCCCAGACATGGTCTTACACT-A-A-CACATCTCATAG
1 TCGATGC-ATGTCCCAGACATGGTCTTACACTGACATCACATATCA-GG
* * *
77193132 TCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCGAGG
1 TCGATG-CATGTCCCAGACATGGTCTTACACTGACATCACATATC-AGG
* * * * *
77193180 CCGATGCATGTCCCAGACAT-GTCTTACACT-AGC-TCTCGTCTCAATG
1 TCGATGCATGTCCCAGACATGGTCTTACACTGA-CATCACATATC-AGG
* * * * * **
77193226 CCGATGCCATGTCCTAGACATGGTCTTAAACTGGC-TCTCATAATGTGG
1 TCGATG-CATGTCCCAGACATGGTCTTACACTGACATCACAT-ATCAGG
*
77193274 CCGATGCATGTCCCAGACAT-GTCTTACACT
1 TCGATGCATGTCCCAGACATGGTCTTACACT
77193304 AGCACACAAA
Statistics
Matches: 220, Mismatches: 32, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
45 11 0.05
46 61 0.28
47 41 0.19
48 36 0.16
49 65 0.30
50 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
TCGATGCATGTCCCAGACATGGTCTTACACTGACATCACATATCAGG
Found at i:77193237 original size:47 final size:48
Alignment explanation
Indices: 77193045--77193306 Score: 242
Period size: 46 Copynumber: 5.6 Consensus size: 48
77193035 GGTCGACGCA
* * * * *
77193045 ATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCAGTGTC-ATGCG
1 ATGTCCCAGACATGGTCTTACACTAGCTCT--CATCTCAATGCCGATGCC
* * *
77193094 ATGTCCCAGACATGGTCTTACACTA--ACACATCTC-ATAGTCGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAT-GCCGATGCC
* * *
77193140 ATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGCCGATG-C
1 ATGTCCCAGACATGGTCTTACACTAGCTCT-CATCTCAATGCCGATGCC
*
77193187 ATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCC
* * *
77193234 ATGTCCTAGACATGGTCTTAAACTGGCTCTCA--T-AATGTGGCCGATG-C
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA--T-GCCGATGCC
77193281 ATGTCCCAGACAT-GTCTTACACTAGC
1 ATGTCCCAGACATGGTCTTACACTAGC
77193307 ACACAAATAA
Statistics
Matches: 179, Mismatches: 22, Indels: 27
0.79 0.10 0.12
Matches are distributed among these distances:
44 1 0.01
45 10 0.06
46 66 0.37
47 43 0.24
48 34 0.19
49 25 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCC
Found at i:77193250 original size:94 final size:95
Alignment explanation
Indices: 77193045--77193311 Score: 343
Period size: 94 Copynumber: 2.8 Consensus size: 95
77193035 GGTCGACGCA
*
77193045 ATGTCCCAGACATGGTCTTACACTGGCTCTCACATATC-AGTGTC-ATGCGATGTCCCAGACATG
1 ATGTCCCAGACATGGTCTTACACTGGCTCT-ACATATCGAG-GCCGATGC-ATGTCCCAGACAT-
*
77193108 GTCTTACACTA--ACACATCTCATAGTCGATGCC
62 GTCTTACACTAGCACACATCTCATAGCCGATGCC
*
77193140 ATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGCCGATGCATGTCCCAGACATGTCT
1 ATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCAGACATGTCT
* * *
77193204 TACACTAGCTCTCGTCTCA-ATGCCGATGCC
66 TACACTAGCACACATCTCATA-GCCGATGCC
* * *
77193234 ATGTCCTAGACATGGTCTTAAACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAGACATGTC
1 ATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATCGAGGCCGATGCATGTCCCAGACATGTC
77193297 TTACACTAGCACACA
65 TTACACTAGCACACA
77193312 AATAACCCAA
Statistics
Matches: 152, Mismatches: 13, Indels: 15
0.84 0.07 0.08
Matches are distributed among these distances:
92 11 0.07
93 22 0.14
94 89 0.59
95 30 0.20
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
ATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCAGACATGTCT
TACACTAGCACACATCTCATAGCCGATGCC
Found at i:77201189 original size:43 final size:43
Alignment explanation
Indices: 77201070--77201189 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 43
77201060 TTGATTTGAG
* *
77201070 ATTTACTTGTAAGACCATGTCTGGGACATCAGCATCGTATCTA
1 ATTTACATGTAAGACCATGTCTGGGACATCGGCATCGTATCTA
* * * **
77201113 ATTTA-GTGTAAGACCTTGTCTGGGATAGAGGCATCGATAT-TGA
1 ATTTACATGTAAGACCATGTCTGGGACATCGGCATCG-TATCT-A
*
77201156 A-TTACATGTAAGACCACGTCTGGGACATCGGCAT
1 ATTTACATGTAAGACCATGTCTGGGACATCGGCAT
77201190 TGTACTTATT
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 29 0.47
43 33 0.53
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (43 bp):
ATTTACATGTAAGACCATGTCTGGGACATCGGCATCGTATCTA
Found at i:77205210 original size:23 final size:23
Alignment explanation
Indices: 77205183--77205231 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
77205173 AAAGCTCAGC
*
77205183 TAATCTCCTAAGAGAAAAATTTG
1 TAATCTCCCAAGAGAAAAATTTG
*
77205206 TAATCTCCCAAGAGAATAATTTG
1 TAATCTCCCAAGAGAAAAATTTG
77205229 TAA
1 TAA
77205232 GTACCAGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (23 bp):
TAATCTCCCAAGAGAAAAATTTG
Found at i:77206656 original size:17 final size:16
Alignment explanation
Indices: 77206630--77206661 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
77206620 TGATGGATCC
77206630 CTGACAAGCTTCCAAA
1 CTGACAAGCTTCCAAA
77206646 CTGATCAAGCTTCCAA
1 CTGA-CAAGCTTCCAA
77206662 TTATCTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.34, C:0.31, G:0.12, T:0.22
Consensus pattern (16 bp):
CTGACAAGCTTCCAAA
Found at i:77206901 original size:46 final size:46
Alignment explanation
Indices: 77206836--77206931 Score: 174
Period size: 46 Copynumber: 2.1 Consensus size: 46
77206826 GGATAACCAC
*
77206836 ATAATAATAGCTTTTATGCACATAGCTTATAAGCATTCCTACTTTA
1 ATAATAACAGCTTTTATGCACATAGCTTATAAGCATTCCTACTTTA
*
77206882 ATAATAACAGCTTTTATGCACATAGCTTATAAGCATTCCTACTTTC
1 ATAATAACAGCTTTTATGCACATAGCTTATAAGCATTCCTACTTTA
77206928 ATAA
1 ATAA
77206932 ATATGGCTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (46 bp):
ATAATAACAGCTTTTATGCACATAGCTTATAAGCATTCCTACTTTA
Found at i:77218797 original size:29 final size:29
Alignment explanation
Indices: 77218735--77218837 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
77218725 GTGACGAGAT
* * *
77218735 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
77218764 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
77218793 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
77218822 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77218838 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:77224613 original size:13 final size:13
Alignment explanation
Indices: 77224595--77224629 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
77224585 TATGTTTTTG
77224595 TATGACTTTGGCT
1 TATGACTTTGGCT
77224608 TATGACTTTGGCT
1 TATGACTTTGGCT
77224621 TATGA-TTTG
1 TATGACTTTG
77224630 ATATGGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.17, C:0.11, G:0.23, T:0.49
Consensus pattern (13 bp):
TATGACTTTGGCT
Found at i:77230803 original size:37 final size:37
Alignment explanation
Indices: 77230746--77230852 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
77230736 GGGGTGTTAC
* *
77230746 ATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAA
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAA
*
77230783 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAA
*
77230820 ATCGCCACACGTAGTCATCGGGTCTTACCCGGA
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGA
77230853 ATATATTTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (37 bp):
ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAA
Found at i:77231121 original size:50 final size:48
Alignment explanation
Indices: 77230993--77231732 Score: 1111
Period size: 48 Copynumber: 15.0 Consensus size: 48
77230983 ATATACACAC
* * *
77230993 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
77231041 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
77231089 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATGTACAT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
77231139 ATCTCATACATATTTCACATTAACCATTCGGCTTTACCACATGTACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
77231187 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATGTACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
77231235 ATCTCATATATATATTTCACACCAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
77231285 ATCTCATATATATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
77231335 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
77231383 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATGTACAT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
77231433 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATGTACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
77231481 ATCTCATATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC------ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
77231535 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
77231583 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
77231633 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
77231681 ATCTCATATATATATATCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATAT-T-TCACATTAGCCATTCGGCTTTACCACATATACAT
77231731 AT
1 AT
77231733 ATTTATCTTG
Statistics
Matches: 645, Mismatches: 31, Indels: 30
0.91 0.04 0.04
Matches are distributed among these distances:
48 336 0.52
49 1 0.00
50 262 0.41
54 46 0.07
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:77231152 original size:98 final size:98
Alignment explanation
Indices: 77231002--77231732 Score: 1223
Period size: 98 Copynumber: 7.4 Consensus size: 98
77230992 CATCTCCTAC
* * *
77231002 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
77231067 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* * *
77231100 ATATTTCACATTAACCATTCGGCTTTACCACATGTACATATCTCATACATATTTCACATTAACCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
* *
77231165 TTCGGCTTTACCACATGTACATATCTC--ATAC
66 TTCGGCTTTACCACATATACATATCTCATATAT
* * **
77231196 ATATTTCACATTAGCCATTCGGCTTTACCACATGTACATATCTCATATATATATTTCACACCAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
77231261 CATTCGGCTTTACCACATATACATATCTCATATAT
64 CATTCGGCTTTACCACATATACATATCTCATATAT
*
77231296 ATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
77231361 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
77231394 ATATTTCACATTAACCATTCGGCTTTACCACATGTACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
77231459 TTCGGCTTTACCACATGTACATATCTCATATATATAT
66 TTCGGCTTTACCACATATACATATCTC----ATATAT
77231496 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
77231561 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
77231594 ATATTTCACATTAGCCATTCGGCTTTGCCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
77231659 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
77231692 ATATATCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
77231733 ATTTATCTTG
Statistics
Matches: 594, Mismatches: 31, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
96 46 0.08
98 408 0.69
100 45 0.08
102 95 0.16
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:77236404 original size:11 final size:11
Alignment explanation
Indices: 77236388--77236424 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
77236378 AAGCCCATTG
77236388 GGCCCAGTTTT
1 GGCCCAGTTTT
*
77236399 GGCCCA--TTG
1 GGCCCAGTTTT
77236408 GGCCCAGTTTT
1 GGCCCAGTTTT
77236419 GGCCCA
1 GGCCCA
77236425 TCGAGCCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.11, C:0.32, G:0.30, T:0.27
Consensus pattern (11 bp):
GGCCCAGTTTT
Found at i:77236405 original size:20 final size:20
Alignment explanation
Indices: 77236380--77236425 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
77236370 TGGTCCGTAA
77236380 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCAGTTTTG
77236400 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCAGTTTTG
77236420 GCCCAT
1 GCCCAT
77236426 CGAGCCCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.11, C:0.33, G:0.28, T:0.28
Consensus pattern (20 bp):
GCCCATTGGGCCCAGTTTTG
Found at i:77236438 original size:20 final size:20
Alignment explanation
Indices: 77236389--77236432 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
77236379 AGCCCATTGG
* *
77236389 GCCCAGTTTTGGCCCATTGG
1 GCCCAGTTTTGGCCCATCGA
77236409 GCCCAGTTTTGGCCCATCGA
1 GCCCAGTTTTGGCCCATCGA
77236429 GCCC
1 GCCC
77236433 CTTTTTCGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.36, G:0.27, T:0.25
Consensus pattern (20 bp):
GCCCAGTTTTGGCCCATCGA
Found at i:77241608 original size:40 final size:40
Alignment explanation
Indices: 77241553--77241762 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77241543 AACATTGGAA
77241553 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77241593 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77241633 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
77241673 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
77241712 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
77241753 CTATATCCGG
1 ATATATCCGG
77241763 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:77249672 original size:40 final size:40
Alignment explanation
Indices: 77249617--77249826 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77249607 AACATTGGAA
77249617 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77249657 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
77249697 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
77249737 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
77249776 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
77249817 CTATATCCGG
1 ATATATCCGG
77249827 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:77255719 original size:11 final size:11
Alignment explanation
Indices: 77255703--77255739 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
77255693 AAGCCCATTG
77255703 GGCCCAGTTTT
1 GGCCCAGTTTT
*
77255714 GGCCCA--TTG
1 GGCCCAGTTTT
77255723 GGCCCAGTTTT
1 GGCCCAGTTTT
77255734 GGCCCA
1 GGCCCA
77255740 TCGAGCCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.11, C:0.32, G:0.30, T:0.27
Consensus pattern (11 bp):
GGCCCAGTTTT
Found at i:77255720 original size:20 final size:20
Alignment explanation
Indices: 77255695--77255740 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
77255685 TGGTCCGTAA
77255695 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCAGTTTTG
77255715 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCAGTTTTG
77255735 GCCCAT
1 GCCCAT
77255741 CGAGCCCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.11, C:0.33, G:0.28, T:0.28
Consensus pattern (20 bp):
GCCCATTGGGCCCAGTTTTG
Found at i:77255753 original size:20 final size:20
Alignment explanation
Indices: 77255704--77255747 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
77255694 AGCCCATTGG
* *
77255704 GCCCAGTTTTGGCCCATTGG
1 GCCCAGTTTTGGCCCATCGA
77255724 GCCCAGTTTTGGCCCATCGA
1 GCCCAGTTTTGGCCCATCGA
77255744 GCCC
1 GCCC
77255748 CTTTTTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.36, G:0.27, T:0.25
Consensus pattern (20 bp):
GCCCAGTTTTGGCCCATCGA
Found at i:77261276 original size:44 final size:42
Alignment explanation
Indices: 77261228--77261377 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 42
77261218 TGTAATTTCA
*
77261228 TGTAAAACCACGTCTGGGACATTGGCATCGATTTGAGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATTT--GATTTACG
* * * * *
77261272 TGTAAGACCATGTCTAGGACATCGACATCGTATTTGATTTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ATTTGATTTACG
* * *
77261315 TGTAAGACC-CTATCTGGGACAGTGGCATCGAGATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATC--GATTTGATTTACG
*
77261358 TGTCAA-ACCACGTCTAGGAC
1 TGT-AAGACCACGTCTGGGAC
77261378 GTTCGCATTG
Statistics
Matches: 84, Mismatches: 16, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
43 45 0.54
44 34 0.40
45 5 0.06
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTTGATTTACG
Found at i:77261320 original size:43 final size:43
Alignment explanation
Indices: 77261214--77261323 Score: 114
Period size: 44 Copynumber: 2.5 Consensus size: 43
77261204 ATAGGATTCC
* * * * * *
77261214 TATTTGTAATTTCATGTAAAACCACGTCTGGGACATTGGCATCG
1 TATTTG-ATTTTCGTGTAAGACCACGTCTAGGACATCGACATCG
* *
77261258 -ATTTGAGATTTACGTGTAAGACCATGTCTAGGACATCGACATCG
1 TATTT--GATTTTCGTGTAAGACCACGTCTAGGACATCGACATCG
77261302 TATTTGATTTTCGTGTAAGACC
1 TATTTGATTTTCGTGTAAGACC
77261324 CTATCTGGGA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
43 20 0.37
44 29 0.54
45 5 0.09
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (43 bp):
TATTTGATTTTCGTGTAAGACCACGTCTAGGACATCGACATCG
Found at i:77263450 original size:40 final size:40
Alignment explanation
Indices: 77263406--77263510 Score: 158
Period size: 40 Copynumber: 2.6 Consensus size: 40
77263396 CTTGCACCAT
* *
77263406 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCATGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
*
77263446 TGCCTTCGGGTCTTAGCCCGGACATAATCACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAA
*
77263486 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
77263511 CATTCAAATG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 58 0.98
41 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAA
Found at i:77265884 original size:28 final size:28
Alignment explanation
Indices: 77265815--77265915 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77265805 GACAAGATTG
* * * *
77265815 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
77265845 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77265873 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
77265902 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77265916 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77265909 original size:29 final size:28
Alignment explanation
Indices: 77265844--77265915 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
77265834 AAAATTGTAC
*
77265844 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
77265872 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
77265901 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77265916 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:77273919 original size:28 final size:28
Alignment explanation
Indices: 77273850--77273950 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77273840 GACAAGATTG
* * * *
77273850 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
77273880 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77273908 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
77273937 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77273951 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77273944 original size:29 final size:28
Alignment explanation
Indices: 77273879--77273950 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
77273869 AAAATTGTAC
*
77273879 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
77273907 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
77273936 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77273951 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:77282714 original size:40 final size:40
Alignment explanation
Indices: 77282665--77282816 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
77282655 ACAACCACAA
* * *** *
77282665 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
77282705 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
77282745 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
77282785 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
77282817 CATTCAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:77287852 original size:9 final size:9
Alignment explanation
Indices: 77287838--77287866 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
77287828 GATTCCTGTT
77287838 ATTTTATTG
1 ATTTTATTG
77287847 ATTTTATTG
1 ATTTTATTG
77287856 ATTTTATTG
1 ATTTTATTG
77287865 AT
1 AT
77287867 CATGCTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (9 bp):
ATTTTATTG
Found at i:77293699 original size:25 final size:27
Alignment explanation
Indices: 77293671--77293729 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
77293661 TTATTTACTA
*
77293671 TATTATAGATA-TT-TAAAATTTTTAT
1 TATTATAGATATTTATAAAATTATTAT
* *
77293696 TATTAGATATATTTATAAAATTATTAT
1 TATTATAGATATTTATAAAATTATTAT
*
77293723 CATTATA
1 TATTATA
77293730 ATTATTATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 9 0.33
26 2 0.07
27 16 0.59
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (27 bp):
TATTATAGATATTTATAAAATTATTAT
Found at i:77299725 original size:17 final size:16
Alignment explanation
Indices: 77299703--77299742 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
77299693 TCTTTTTTTC
77299703 TCCTCTCTTCATCTATT
1 TCCTCTCTTCATCT-TT
*
77299720 TCCTCTTCTTCTTCTTT
1 TCCTC-TCTTCATCTTT
77299737 TCCTCT
1 TCCTCT
77299743 ATAGCCGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.57
18 8 0.38
ACGTcount: A:0.05, C:0.38, G:0.00, T:0.57
Consensus pattern (16 bp):
TCCTCTCTTCATCTTT
Found at i:77307163 original size:17 final size:17
Alignment explanation
Indices: 77307133--77307179 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
77307123 TTATTTTTAC
**
77307133 TTTATTTTGCTTTTCCT
1 TTTATTTTTATTTTCCT
* *
77307150 TTTGTTTTTATTTTTCT
1 TTTATTTTTATTTTCCT
77307167 TTTATTTTTATTT
1 TTTATTTTTATTT
77307180 CTATTTCAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (17 bp):
TTTATTTTTATTTTCCT
Found at i:77307175 original size:11 final size:11
Alignment explanation
Indices: 77307122--77307185 Score: 51
Period size: 11 Copynumber: 5.6 Consensus size: 11
77307112 TTTGAGTCCA
77307122 TTTATTTTTAC-
1 TTTATTTTT-CT
*
77307133 TTTATTTTGCT
1 TTTATTTTTCT
*
77307144 TTTCCTTTTGT-T
1 TTT-ATTTT-TCT
77307156 TTTATTTTTCT
1 TTTATTTTTCT
*
77307167 TTTATTTTTAT
1 TTTATTTTTCT
77307178 TTCTATTT
1 TT-TATTT
77307186 CAGTGTTCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
10 2 0.05
11 28 0.65
12 13 0.30
ACGTcount: A:0.11, C:0.09, G:0.03, T:0.77
Consensus pattern (11 bp):
TTTATTTTTCT
Found at i:77307175 original size:23 final size:23
Alignment explanation
Indices: 77307133--77307185 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
77307123 TTATTTTTAC
* *
77307133 TTTATTTTGCTTTTCCTTTTGTT
1 TTTATTTTGCTTTTACTTTTATT
* *
77307156 TTTATTTTTCTTTTATTTTTATT
1 TTTATTTTGCTTTTACTTTTATT
*
77307179 TCTATTT
1 TTTATTT
77307186 CAGTGTTCAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.77
Consensus pattern (23 bp):
TTTATTTTGCTTTTACTTTTATT
Found at i:77308366 original size:14 final size:16
Alignment explanation
Indices: 77308342--77308373 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
77308332 TTCTGAATTA
77308342 TTTCTTATTA-TGTAC
1 TTTCTTATTATTGTAC
77308357 TTTC-TATTATTGTAC
1 TTTCTTATTATTGTAC
77308372 TT
1 TT
77308374 GTTCTTATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.19, C:0.12, G:0.06, T:0.62
Consensus pattern (16 bp):
TTTCTTATTATTGTAC
Found at i:77317660 original size:21 final size:21
Alignment explanation
Indices: 77317636--77317675 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
77317626 CCAGTCCCAT
77317636 GCAT-CAGATAATAATAACATG
1 GCATGCAG-TAATAATAACATG
77317657 GCATGCAGTAATAATAACA
1 GCATGCAGTAATAATAACA
77317676 GTCAAACTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.23
Consensus pattern (21 bp):
GCATGCAGTAATAATAACATG
Found at i:77319403 original size:40 final size:40
Alignment explanation
Indices: 77319344--77319591 Score: 266
Period size: 40 Copynumber: 6.2 Consensus size: 40
77319334 CATTGGAATG
* * *
77319344 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
*
77319384 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTATT
*
77319424 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTATT
* * **
77319464 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
* * * * *
77319504 AAATCCGGGTTAAGATCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
* ** * * * * *
77319544 ATAACCGGGCTTCGTCCCGAAGGTATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
77319584 ATATCCGG
1 ATATCCGG
77319592 TTAAATTTCG
Statistics
Matches: 178, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 3 0.02
40 173 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
Found at i:77327375 original size:40 final size:40
Alignment explanation
Indices: 77327329--77327468 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
77327319 CGGATATAAC
*
77327329 GACTCGCTCAAATGCCTTCGGGAC-GAAGCCC-GGTTATAGT
1 GACTCGCACAAATGCCTTCGGGACTGAA-CCCGGGTT-TAGT
* *
77327369 GACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
* * * * * *
77327409 AACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
* *
77327448 AACTCGCACGAATGCCTTCGG
1 GACTCGCACAAATGCCTTCGG
77327469 ATCCTAGTCC
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.38
40 48 0.55
41 6 0.07
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
Found at i:77327438 original size:79 final size:81
Alignment explanation
Indices: 77327337--77327517 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
77327327 ACGACTCGCT
** * *
77327337 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
77327400 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
77327417 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
77327481 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
77327497 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
77327518 TGGACATCAT
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 54 0.62
80 30 0.34
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:77329879 original size:27 final size:27
Alignment explanation
Indices: 77329831--77329882 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
77329821 AGCGAGGCTG
*
77329831 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
77329858 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
77329883 ACATTATATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:77330370 original size:10 final size:10
Alignment explanation
Indices: 77330357--77330391 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
77330347 AGCTCAACTC
*
77330357 AGCTCATTTG
1 AGCTCGTTTG
*
77330367 AGCTCGTTTC
1 AGCTCGTTTG
77330377 AGCTCGTTTG
1 AGCTCGTTTG
77330387 AGCTC
1 AGCTC
77330392 TACCGAGCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (10 bp):
AGCTCGTTTG
Found at i:77330370 original size:20 final size:20
Alignment explanation
Indices: 77330347--77330391 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
77330337 AGCTCCGTCC
77330347 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
*** *
77330367 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTCAGCTCATTTG
77330387 AGCTC
1 AGCTC
77330392 TACCGAGCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.18, C:0.29, G:0.20, T:0.33
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:77332340 original size:27 final size:27
Alignment explanation
Indices: 77332252--77332421 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
77332242 AGGGCAAAAT
* * * *
77332252 GGTAATTTTACCCCACAAGGATATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
77332279 GGTAATTCTACCCTACAGGGGT-TTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
77332305 AATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
77332332 GGTAATTCTATCCTACAAGCGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
77332359 GGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
77332385 AATAATTCTA-CCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
77332411 GGTAATTCTAC
1 GGTAATTCTAC
77332422 AACTTATCCA
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
25 5 0.04
26 55 0.46
27 59 0.50
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:77332340 original size:53 final size:53
Alignment explanation
Indices: 77332256--77332410 Score: 181
Period size: 53 Copynumber: 2.9 Consensus size: 53
77332246 CAAAATGGTA
* * *
77332256 ATTT-TACCCCACAAGGATATCTCGGTAATTCTACCCTACAGGGGT-TTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTACAGGGGTATTTCAAT
* * **
77332308 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAAGCGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTACAGGGGTATTTCAAT
* **
77332362 AATTCTACCCTAC-AGGGTATTTCAATAATTCTACCTACAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTACAGGGGTATTTC
77332411 GGTAATTCTA
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
52 18 0.20
53 53 0.60
54 17 0.19
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.35
Consensus pattern (53 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTACAGGGGTATTTCAAT
Found at i:77339082 original size:30 final size:29
Alignment explanation
Indices: 77339028--77339084 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
77339018 ACGAAGTCAC
* *
77339028 CAGATACATATTGTGGCTAGGCCACCAAA
1 CAGATACATATTGTGGCGAAGCCACCAAA
*
77339057 CAGATATATATATGTGGCGAAGCCACCA
1 CAGATACATAT-TGTGGCGAAGCCACCA
77339085 GATTGCAGCG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (29 bp):
CAGATACATATTGTGGCGAAGCCACCAAA
Found at i:77339150 original size:27 final size:26
Alignment explanation
Indices: 77339102--77339153 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
77339092 GCGAGGCTGC
*
77339102 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
77339128 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
77339154 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77339850 original size:26 final size:26
Alignment explanation
Indices: 77339796--77339966 Score: 225
Period size: 27 Copynumber: 6.4 Consensus size: 26
77339786 AGGGCAAAAT
* * *
77339796 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
77339823 GGTAATTCTACCCTACAGGGTATTTC
1 GGTAATTCTACCCTACAGGGTATTTC
* *
77339849 GGTATTTTTACCCTACGAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
77339876 GGTAATTCTATCCTACAGGGTATTTC
1 GGTAATTCTACCCTACAGGGTATTTC
*
77339902 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
**
77339929 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
77339956 GGTAATTCTAC
1 GGTAATTCTAC
77339967 AACTTATCCA
Statistics
Matches: 127, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 48 0.38
27 79 0.62
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:77339858 original size:53 final size:53
Alignment explanation
Indices: 77339796--77339962 Score: 235
Period size: 53 Copynumber: 3.1 Consensus size: 53
77339786 AGGGCAAAAT
* *
77339796 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTC
* * *
77339849 GGTATTTTTACCCTACGAGGGTATTTCGGTAATTCTATCCTACAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTC
* * * **
77339902 GGTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACA-GGGTATTTC
77339956 GGTAATT
1 GGTAATT
77339963 CTACAACTTA
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 84 0.84
54 16 0.16
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (53 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTC
Found at i:77346173 original size:43 final size:43
Alignment explanation
Indices: 77346148--77346232 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
77346138 AGTTTTACAT
* *
77346148 GTAATCACATATTGATGCCACTGTCCCAGACAGGGTCTTACTC
1 GTAATCACATATCGATGCCACTGTCCCAGACAGAGTCTTACTC
*
77346191 GTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACT
1 GTAATCACATATCGATGCCACTGTCCCAGACAGAGTCTTACT
77346233 TGTACACATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (43 bp):
GTAATCACATATCGATGCCACTGTCCCAGACAGAGTCTTACTC
Found at i:77346246 original size:43 final size:43
Alignment explanation
Indices: 77346153--77346246 Score: 140
Period size: 43 Copynumber: 2.2 Consensus size: 43
77346143 TACATGTAAT
77346153 CACATAT-T-GATGCCACTGTCCCAGACAGGGTCTTACTCGTA
1 CACATATATCGATGCCACTGTCCCAGACAGGGTCTTACTCGTA
* *
77346194 -ATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACTTGTA
1 CA-CATATATCGATGCCACTGTCCCAGACAGGGTCTTACTCGTA
77346237 CACATATATC
1 CACATATATC
77346247 AGAATCACAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
40 1 0.02
41 4 0.09
42 1 0.02
43 39 0.85
44 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (43 bp):
CACATATATCGATGCCACTGTCCCAGACAGGGTCTTACTCGTA
Found at i:77346284 original size:56 final size:57
Alignment explanation
Indices: 77346224--77346366 Score: 186
Period size: 56 Copynumber: 2.6 Consensus size: 57
77346214 TCCCAGACAG
* * * *
77346224 GGTCTTACTTGTACACATATATCAGAATCACA-A-ATCGATGTCAACGTATTAAACGT
1 GGTCTTACTCGTACACATATATCAGAAGC-CATATATCGATGCCAACGTATTAAACAT
* *
77346280 GGTCTTACTCATACACATATAT-TGAAGCCATATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGTACACATATATCAGAAGCCATATATCGATGCCAACGTATTAAACAT
*
77346336 GGTCTTACTCGCACACATATATC-GAAGCCAT
1 GGTCTTACTCGTACACATATATCAGAAGCCAT
77346367 GGTCTTACTC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
54 2 0.03
55 5 0.07
56 69 0.91
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.29
Consensus pattern (57 bp):
GGTCTTACTCGTACACATATATCAGAAGCCATATATCGATGCCAACGTATTAAACAT
Found at i:77346977 original size:15 final size:15
Alignment explanation
Indices: 77346959--77346988 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77346949 TAAAAAATTC
77346959 CAATACAAAACATAT
1 CAATACAAAACATAT
*
77346974 CAATCCAAAACATAT
1 CAATACAAAACATAT
77346989 ATTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:77347784 original size:49 final size:48
Alignment explanation
Indices: 77347626--77347801 Score: 149
Period size: 49 Copynumber: 3.5 Consensus size: 48
77347616 GTTACACGAC
* * **
77347626 GCCATGTCCCAGACATGGTCTTACACTAGCTAGCA-C-ATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATC-GGGTCGAT
* * * *
77347674 GCCATGTCCCAGACAGGTCTTACACTGAGTGGCTTTTATATATAGAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACAC----TGGCTATCATCTATCG-GGTCGAT
** *
77347727 GCTGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG-GTCGAT
* *
77347776 GCCATGTCCTAGACAAGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
77347802 AACACACAAC
Statistics
Matches: 102, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
47 10 0.10
48 16 0.16
49 40 0.39
51 5 0.05
53 31 0.30
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGGGTCGAT
Found at i:77347882 original size:48 final size:48
Alignment explanation
Indices: 77347822--77348036 Score: 226
Period size: 46 Copynumber: 4.6 Consensus size: 48
77347812 AAGCTGACGC
* * *
77347822 CATGTCCCAGACAGGTTTTACACTAGCTTGTATATCTCAAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * ** *
77347870 CATGTCCTAGACATGTCTTACACTAGC-TCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* ** *
77347916 CATGTCCCAGGCATGTCTTACACCGGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * *
77347964 CATGTCCCAGACATGTCTTACATTGGCTCT-CATAATGT---GGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTAT-ATCTCAAGGCCGATG
77348010 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
77348037 ACACATATCA
Statistics
Matches: 139, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
46 68 0.49
47 4 0.03
48 63 0.45
49 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:77348045 original size:94 final size:93
Alignment explanation
Indices: 77347822--77348036 Score: 281
Period size: 94 Copynumber: 2.3 Consensus size: 93
77347812 AAGCTGACGC
* * *
77347822 CATGTCCCAGACAGGTTTTACACTAGCTTGTATATCTCAAGGCCAATGCATGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCAATGCATGTCCCAGACATGTC
*
77347887 TTACACTAGCTCTCGTCTCAATGCCGATG
66 TTACACTAGCTCTCG-ATCAATGCCGATG
* ** * *
77347916 CATGTCCCAGGCATGTCTTACACCGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCAATGCATGTCCCAGACATGTC
* *
77347981 TTACATTGGCTCTC-AT-AATGTGGCCGATG
66 TTACACTAGCTCTCGATCAA--T-GCCGATG
77348010 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
77348037 ACACATATCA
Statistics
Matches: 104, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 1 0.01
94 100 0.96
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCAATGCATGTCCCAGACATGTC
TTACACTAGCTCTCGATCAATGCCGATG
Found at i:77348720 original size:20 final size:20
Alignment explanation
Indices: 77348695--77348733 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
77348685 ACAATTTCAA
77348695 TTATTTTAC-ACATTTACAAC
1 TTATTTTACAAC-TTTACAAC
77348715 TTATTTTACAACTTTACAA
1 TTATTTTACAACTTTACAA
77348734 AATGCCCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATTTTACAACTTTACAAC
Found at i:77349513 original size:25 final size:25
Alignment explanation
Indices: 77349492--77349585 Score: 143
Period size: 25 Copynumber: 3.8 Consensus size: 25
77349482 ACTAGCTGTG
77349492 AATCGGTATGCTCTCACGAGCTATA
1 AATCGGTATGCTCTCACGAGCTATA
77349517 AATCGGTATGCTCTCACGAGCTATA
1 AATCGGTATGCTCTCACGAGCTATA
* *
77349542 AATTGTTATGCTCTCACGAGCTATA
1 AATCGGTATGCTCTCACGAGCTATA
** *
77349567 AATTAGTATCCTCTCACGA
1 AATCGGTATGCTCTCACGA
77349586 CTTGTGGAGT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
AATCGGTATGCTCTCACGAGCTATA
Found at i:77351155 original size:2 final size:2
Alignment explanation
Indices: 77351148--77351181 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
77351138 ATGGATTGAA
* *
77351148 AT AT AT AT AT CT AT AT AT CT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77351182 GATCCTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77353636 original size:11 final size:10
Alignment explanation
Indices: 77353594--77353640 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
77353584 TTCTTAATTC
77353594 ATCA-ACCAA
1 ATCATACCAA
77353603 ATCATACCAA
1 ATCATACCAA
*
77353613 ATCTAAACCAA
1 ATC-ATACCAA
77353624 AGTCATACCAA
1 A-TCATACCAA
*
77353635 AGCATA
1 ATCATA
77353641 TTTTTCAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 12 0.38
11 14 0.44
12 2 0.06
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:77354424 original size:43 final size:42
Alignment explanation
Indices: 77354353--77354477 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 42
77354343 AGGAAAGGTC
*
77354353 ATACAATGCCAACGTCCCA-AACGTGGTCTTACATGTAATCAA
1 ATACAATGCCAATGTCCCAGAA-GTGGTCTTACATGTAATCAA
* * * *
77354395 ATATCAATGCCACTGTCCTAGATAG-GGTCTTACACGAAATCAA
1 ATA-CAATGCCAATGTCCCAGA-AGTGGTCTTACATGTAATCAA
* * *
77354438 GTACGATGCCAATGTCCCAGACGTGGTCTTACATGATAAT
1 ATACAATGCCAATGTCCCAGAAGTGGTCTTACATG-TAAT
77354478 ACATATCGGA
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
41 1 0.02
42 28 0.42
43 34 0.52
44 2 0.03
45 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
ATACAATGCCAATGTCCCAGAAGTGGTCTTACATGTAATCAA
Found at i:77357419 original size:16 final size:16
Alignment explanation
Indices: 77357398--77357428 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
77357388 TACCAAATCA
77357398 AATCCTTAATCATTAC
1 AATCCTTAATCATTAC
77357414 AATCCTTAATCATTA
1 AATCCTTAATCATTA
77357429 TGTACATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (16 bp):
AATCCTTAATCATTAC
Found at i:77358884 original size:2 final size:2
Alignment explanation
Indices: 77358877--77358927 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
77358867 AGTAATATGT
*
77358877 TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77358919 TA TA TA TA T
1 TA TA TA TA T
77358928 GAATATGATC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:77364719 original size:49 final size:49
Alignment explanation
Indices: 77364647--77364820 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
77364637 TGAGGTCACG
*
77364647 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * * * * *
77364696 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
* *
77364747 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TGGATAATTGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
77364795 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
77364821 TGCGTACCAG
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
48 29 0.27
49 38 0.35
50 7 0.06
51 34 0.31
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:77364814 original size:99 final size:100
Alignment explanation
Indices: 77364642--77364833 Score: 341
Period size: 99 Copynumber: 1.9 Consensus size: 100
77364632 TATTGTGAGG
77364642 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
*
77364707 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * *
77364742 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TGGATAATTGGTCGTATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
77364806 AAGTGCAGGCTACTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCGTACCAGATA
77364834 GCTTTGGCTA
Statistics
Matches: 88, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
99 52 0.59
100 36 0.41
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:77367744 original size:44 final size:43
Alignment explanation
Indices: 77367661--77367800 Score: 165
Period size: 42 Copynumber: 3.3 Consensus size: 43
77367651 ATAGGATTCT
* * **
77367661 GATATGTGATTTTGTGTAAGACCACGTCTGGAATGTTGGCATC
1 GATATGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC
* *
77367704 GATTTGTGATTTATGTGTAAGACAATGTCTGGGACATTGGCATC
1 GATATGTGATTT-TGTGTAAGACCATGTCTGGGACATTGGCATC
* * * * *
77367748 G-TATATGAGTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATATGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC
77367790 GATATGTGATT
1 GATATGTGATT
77367801 ACATGTAAGA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 28 0.35
43 25 0.31
44 27 0.34
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.34
Consensus pattern (43 bp):
GATATGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC
Found at i:77379279 original size:28 final size:28
Alignment explanation
Indices: 77379218--77379315 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
77379208 TCACAAATTG
** * *
77379218 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
77379247 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
77379275 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
77379303 GCACTAAGTGTGC
1 GCACTAAGTGTGC
77379316 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:77390611 original size:24 final size:24
Alignment explanation
Indices: 77390576--77390651 Score: 125
Period size: 24 Copynumber: 3.2 Consensus size: 24
77390566 AGTCTATCAA
77390576 GAGAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGTTGATAAGG
*
77390600 GATAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGTTGATAAGG
* *
77390624 GAGAGGATTTAGGAGCTGATTAGG
1 GAGAGGATTTAGGAGTTGATAAGG
77390648 GAGA
1 GAGA
77390652 ATAGTGTTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.33, C:0.01, G:0.41, T:0.25
Consensus pattern (24 bp):
GAGAGGATTTAGGAGTTGATAAGG
Found at i:77392092 original size:27 final size:27
Alignment explanation
Indices: 77392052--77392162 Score: 152
Period size: 27 Copynumber: 4.1 Consensus size: 27
77392042 AGGAAGCGTC
* *
77392052 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
77392079 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
77392106 CTGGTGGATCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
77392133 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
77392159 CTGG
1 CTGG
77392163 CAGTAATGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 13 0.17
27 62 0.83
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:77397032 original size:10 final size:10
Alignment explanation
Indices: 77397008--77397038 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
77396998 AAGGCCGTAA
77397008 TGACCGAAGAG
1 TGACCGAA-AG
77397019 TGACCGAAAG
1 TGACCGAAAG
77397029 TGACCGAAAG
1 TGACCGAAAG
77397039 GTCGGCACTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.60
11 8 0.40
ACGTcount: A:0.39, C:0.19, G:0.32, T:0.10
Consensus pattern (10 bp):
TGACCGAAAG
Found at i:77397660 original size:27 final size:26
Alignment explanation
Indices: 77397616--77397667 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
77397606 CTCGCTGCAA
*
77397616 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
77397643 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
77397668 GTAGCCTCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:77403792 original size:38 final size:39
Alignment explanation
Indices: 77403710--77403891 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
77403700 AATGTTCGAG
77403710 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
77403749 TGATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
77403787 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
77403826 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
77403866 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
77403892 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:77407011 original size:29 final size:29
Alignment explanation
Indices: 77406969--77407101 Score: 248
Period size: 29 Copynumber: 4.6 Consensus size: 29
77406959 AAAATTGTAC
*
77406969 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
77406998 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
77407027 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
77407057 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
77407086 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
77407102 TTCACTATAT
Statistics
Matches: 102, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 73 0.72
30 29 0.28
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:77407065 original size:59 final size:58
Alignment explanation
Indices: 77406969--77407101 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 58
77406959 AAAATTGTAC
77406969 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
77407027 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
77407086 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
77407102 TTCACTATAT
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 50 0.68
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:77407089 original size:88 final size:89
Alignment explanation
Indices: 77406939--77407101 Score: 265
Period size: 88 Copynumber: 1.8 Consensus size: 89
77406929 GACAAGATTG
* * *
77406939 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
77407004 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
77407028 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
77407092 AAGTGTGCGA
66 AAGTGTGCGA
77407102 TTCACTATAT
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 53 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:77412976 original size:38 final size:39
Alignment explanation
Indices: 77412925--77413065 Score: 214
Period size: 38 Copynumber: 3.6 Consensus size: 39
77412915 AATGTTCGAG
77412925 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
* *
77412963 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
* *
77413002 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
*
77413040 TGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
77413066 CTTTGTGCGG
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
38 65 0.69
39 21 0.22
40 8 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
Found at i:77420126 original size:19 final size:19
Alignment explanation
Indices: 77420102--77420142 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
77420092 TTAAATTGTT
*
77420102 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
77420121 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
77420140 TTA
1 TTA
77420143 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:77422183 original size:39 final size:39
Alignment explanation
Indices: 77422126--77422221 Score: 138
Period size: 39 Copynumber: 2.5 Consensus size: 39
77422116 TTATATGATT
*
77422126 TGGTGTTATATCCAGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
77422165 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
** * *
77422204 CAGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
77422222 TAAAGTCCCG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:77423205 original size:68 final size:68
Alignment explanation
Indices: 77423096--77423242 Score: 276
Period size: 68 Copynumber: 2.2 Consensus size: 68
77423086 CTTGTAGTGA
*
77423096 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGTTTTTCGAGTTCTTATGAT
1 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
77423161 CTT
66 CTT
*
77423164 ATTTGTGATTTTGTTGCAAGCATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
1 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
77423229 CTT
66 CTT
77423232 ATTTGTGATTT
1 ATTTGTGATTT
77423243 CAATATTTGG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 77 1.00
ACGTcount: A:0.24, C:0.09, G:0.20, T:0.48
Consensus pattern (68 bp):
ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
CTT
Found at i:77432606 original size:40 final size:40
Alignment explanation
Indices: 77432527--77432684 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
77432517 TTCGAATGAT
* * * *
77432527 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
77432567 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
77432607 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
77432647 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
77432685 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:77432705 original size:80 final size:80
Alignment explanation
Indices: 77432527--77432714 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
77432517 TTCGAATGAT
* *
77432527 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
77432592 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
77432607 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
77432668 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
77432688 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
77432715 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:77440679 original size:40 final size:40
Alignment explanation
Indices: 77440600--77440757 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
77440590 TTCGAATGAT
* * * *
77440600 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
77440640 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
77440680 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
77440720 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
77440758 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:77440778 original size:80 final size:80
Alignment explanation
Indices: 77440600--77440787 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
77440590 TTCGAATGAT
* *
77440600 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
77440665 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
77440680 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
77440741 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
77440761 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
77440788 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:77447417 original size:40 final size:39
Alignment explanation
Indices: 77447331--77447540 Score: 190
Period size: 40 Copynumber: 5.3 Consensus size: 39
77447321 CCTTCGGAAT
* *
77447331 TTAA-CCGGATATATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATATGACTCGCACAAATGCCTTCGGGTC
* * *
77447369 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATA-TGACTCGCACAAATGCCTTCGGGTC
* * * * *
77447409 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTA
1 TTAACCCGGATAT-ATGACTCGCACAAATGCCTTCGGGTC
* ** *
77447449 TTAGCCCGGATATAACACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATATGACTCGCACAAATGCCTTCGGGTC
* * * * *
77447488 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATAT-ATGACTCGCACAAATGCCTTCGGGTC
*
77447528 TTAGCCCGGATAT
1 TTAACCCGGATAT
77447541 CATTCCAATG
Statistics
Matches: 139, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
37 2 0.01
39 41 0.29
40 94 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
TTAACCCGGATATATGACTCGCACAAATGCCTTCGGGTC
Found at i:77447482 original size:79 final size:79
Alignment explanation
Indices: 77447331--77447540 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 79
77447321 CCTTCGGAAT
* * * ** * **
77447331 TTAA-CCGGATAT-ATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA-ACACTCGCAC
77447394 AATTGCCTTCGGGTC
65 AATTGCCTTCGGGTC
* ** *
77447409 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTA-TTAGCCCGGATATAACACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGG-ACTTAGCCCGGATATAACACTCGCAC
77447473 GAA-TGCCTTCGGGTC
65 -AATTGCCTTCGGGTC
* * *
77447488 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
77447541 CATTCCAATG
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
78 5 0.05
79 71 0.65
80 33 0.30
81 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACACTCGCACA
ATTGCCTTCGGGTC
Found at i:77451681 original size:50 final size:50
Alignment explanation
Indices: 77451617--77451754 Score: 208
Period size: 48 Copynumber: 2.8 Consensus size: 50
77451607 CTGGTACGCA
77451617 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
* * * * **
77451667 TAGTAGCCTACACTTAGTACTACACATGCGACCTCA--GTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
77451715 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCAT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCAT
77451755 AGATCATTCG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
48 42 0.55
50 34 0.45
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
Found at i:77463394 original size:9 final size:9
Alignment explanation
Indices: 77463376--77463448 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
77463366 TTTATTTATG
77463376 TTAA-GTGT
1 TTAATGTGT
77463384 TTAATGTGT
1 TTAATGTGT
77463393 TT--TGTGT
1 TTAATGTGT
77463400 TTAATAAGTGT
1 TTAAT--GTGT
77463411 TTAAATGTGT
1 TT-AATGTGT
*
77463421 TTAATATG-
1 TTAATGTGT
77463429 TT--TGT-T
1 TTAATGTGT
77463435 TTAATGTGT
1 TTAATGTGT
77463444 TTAAT
1 TTAAT
77463449 TGCAGGTGTC
Statistics
Matches: 53, Mismatches: 2, Indels: 19
0.72 0.03 0.26
Matches are distributed among these distances:
6 4 0.08
7 7 0.13
8 9 0.17
9 18 0.34
10 6 0.11
11 6 0.11
12 3 0.06
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (9 bp):
TTAATGTGT
Found at i:77463421 original size:21 final size:22
Alignment explanation
Indices: 77463395--77463448 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
77463385 TAATGTGTTT
77463395 TGTGTTTAATAAG-TGTTTAAA
1 TGTGTTTAATAAGTTGTTTAAA
* *
77463416 TGTGTTTAATATGTTTGTTTTAA
1 TGTGTTTAATAAG-TTGTTTAAA
77463439 TGTGTTTAAT
1 TGTGTTTAAT
77463449 TGCAGGTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 12 0.41
23 17 0.59
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (22 bp):
TGTGTTTAATAAGTTGTTTAAA
Found at i:77463572 original size:24 final size:24
Alignment explanation
Indices: 77463525--77463574 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
77463515 TTCAAGTGAT
**
77463525 TTTCGGTTACATACAAGGGGGACA
1 TTTCGGTTACATACAAGGAAGACA
*
77463549 TTTCTGTTACATACAAGGAAGACA
1 TTTCGGTTACATACAAGGAAGACA
77463573 TT
1 TT
77463575 ATACATCATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (24 bp):
TTTCGGTTACATACAAGGAAGACA
Found at i:77465902 original size:17 final size:18
Alignment explanation
Indices: 77465876--77465909 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
77465866 TTTTTGTTTA
77465876 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
77465893 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
77465910 AAATTTGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:77469744 original size:39 final size:39
Alignment explanation
Indices: 77469690--77469852 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
77469680 TGTGAATGAA
77469690 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
77469729 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
77469768 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
77469807 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
77469847 TGTGCG
1 TGTGCG
77469853 GGTTACCATA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:77482549 original size:40 final size:40
Alignment explanation
Indices: 77482462--77482672 Score: 194
Period size: 40 Copynumber: 5.3 Consensus size: 40
77482452 CCTTCGGAAT
** * *
77482462 TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
77482501 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
77482541 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
77482581 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
77482621 TTAGCCCGGATATAATTACTAGCACAATTGCCTTC-GGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
77482660 TTAGCCCGGATAT
1 TTAACCCGGATAT
77482673 CATTCCAATG
Statistics
Matches: 142, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
39 16 0.11
40 122 0.86
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:77482587 original size:80 final size:80
Alignment explanation
Indices: 77482462--77482672 Score: 230
Period size: 80 Copynumber: 2.7 Consensus size: 80
77482452 CCTTCGGAAT
** * * ** * ***
77482462 TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
77482526 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
77482541 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
77482606 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
77482621 TTAGCCCGGATATAATTACTAGCACAATTGCCTTC-GGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
77482673 CATTCCAATG
Statistics
Matches: 108, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 20 0.19
80 86 0.80
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:77490541 original size:40 final size:39
Alignment explanation
Indices: 77490470--77490658 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
77490460 GGATATAATG
* * * *
77490470 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGGTTATAGTG
1 ACTCGCAC-AATGCCTTCGGGTCTTAA-CCCGGTTATAGTA
*
77490510 ACTCGCACAATTGCCTTCGGGTCTTAACCCGGATT-TGGTA
1 ACTCGCACAA-TGCCTTCGGGTCTTAACCCGG-TTATAGTA
* * * **
77490550 ACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACA
1 ACTCGCAC-AATGCCTTCGGGTCTTAACCCGGTTATAGTA
* * *
77490590 ACTCGCACGAATGCCTTCGGGTCTTAGCCC-GTCA-AGCA
1 ACTCGCAC-AATGCCTTCGGGTCTTAACCCGGTTATAGTA
*
77490628 TACT-GCACAATGCCTTCGGGTCTTAGCCCGG
1 -ACTCGCACAATGCCTTCGGGTCTTAACCCGG
77490659 ATATCTAGCA
Statistics
Matches: 126, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
37 21 0.17
38 8 0.06
39 8 0.06
40 83 0.66
41 6 0.05
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGTCTTAACCCGGTTATAGTA
Found at i:77490579 original size:80 final size:78
Alignment explanation
Indices: 77490477--77490662 Score: 207
Period size: 80 Copynumber: 2.4 Consensus size: 78
77490467 ATGACTCGCT
* ** * ***
77490477 CAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC-AATTGCCTTCGGGTCTTAACCCG
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAACCC-
*** *
77490541 GATTTGGTA-ACTTGCA
64 G-TCAAGCATAC-TGCA
*
77490557 CAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGT
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGT
77490622 CAAGCATACTGCA
66 CAAGCATACTGCA
77490635 C-AATGCCTTCGGGTCTTAGCCCGGATAT
1 CAAATGCCTTCGGGTCTTAGCCCGGATAT
77490663 CTAGCAAATG
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
77 27 0.29
78 8 0.09
79 3 0.03
80 52 0.57
81 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGT
CAAGCATACTGCA
Found at i:77493398 original size:40 final size:40
Alignment explanation
Indices: 77493315--77493535 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
77493305 ACCCAAGTAT
** * *
77493315 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
77493353 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
77493393 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
77493433 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
77493473 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
77493514 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
77493536 CATTCGAATA
Statistics
Matches: 153, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 97 0.63
41 29 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:77501419 original size:40 final size:40
Alignment explanation
Indices: 77501336--77501556 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
77501326 ACCCAAGTAT
** * *
77501336 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
77501374 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
77501414 CTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
77501454 CTTCGGGTTTTGGCCTGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
77501494 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
77501535 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
77501557 CATTCGAATA
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 95 0.63
41 29 0.19
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:77506973 original size:50 final size:51
Alignment explanation
Indices: 77506916--77507047 Score: 124
Period size: 50 Copynumber: 2.6 Consensus size: 51
77506906 ATGTGTTTTG
* *
77506916 CATTAAATAAAACCATGCATTATGTAACTCTCATGTTTGTT-AAGTTTACAT
1 CATTAAATAAAA-CATGCATTATGTAACTCTCAAGTTAGTTAAAGTTTACAT
** ** * *
77506967 CA-TAAATTATGACATGTTTTATGTAACTATCAAGTTAGTTAAAGTTTGCAT
1 CATTAAA-TAAAACATGCATTATGTAACTCTCAAGTTAGTTAAAGTTTACAT
** *
77507018 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAA-TAAAACATGCATTATGTAACTC
77507048 ATTTGTTTAT
Statistics
Matches: 64, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
50 27 0.42
51 16 0.25
52 21 0.33
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (51 bp):
CATTAAATAAAACATGCATTATGTAACTCTCAAGTTAGTTAAAGTTTACAT
Found at i:77507045 original size:52 final size:50
Alignment explanation
Indices: 77506929--77507046 Score: 137
Period size: 50 Copynumber: 2.3 Consensus size: 50
77506919 TAAATAAAAC
* * * *
77506929 CATGCATTATGTAACTCTCATGTTTGTTAAGTTTACATCATAAATTATGA
1 CATGCATTATGTAACTATCAAGTTAGTTAAGTTTACATCATAAATTAAGA
** * *
77506979 CATGTTTTATGTAACTATCAAGTTAGTTAAAGTTTGCATCATTAAATTAAGT
1 CATGCATTATGTAACTATCAAGTTAGTT-AAGTTTACATCA-TAAATTAAGA
*
77507031 CATGCATTAAGTAACT
1 CATGCATTATGTAACT
77507047 CATTTGTTTA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 23 0.42
51 11 0.20
52 21 0.38
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (50 bp):
CATGCATTATGTAACTATCAAGTTAGTTAAGTTTACATCATAAATTAAGA
Found at i:77508249 original size:18 final size:19
Alignment explanation
Indices: 77508219--77508259 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
77508209 TAGAAGTTTC
77508219 GAAATATTTAAAAAAAATT
1 GAAATATTTAAAAAAAATT
*
77508238 GAAATA-TTAAAAAAATTT
1 GAAATATTTAAAAAAAATT
77508256 GAAA
1 GAAA
77508260 AAAAATATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.29
Consensus pattern (19 bp):
GAAATATTTAAAAAAAATT
Found at i:77508412 original size:18 final size:18
Alignment explanation
Indices: 77508372--77508412 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
77508362 AGTTGTCACA
*
77508372 CAAATGAAATCTTTCGAT
1 CAAAAGAAATCTTTCGAT
* *
77508390 TAAAAGAAATCTTTTGAT
1 CAAAAGAAATCTTTCGAT
77508408 CAAAA
1 CAAAA
77508413 TTTTTTTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (18 bp):
CAAAAGAAATCTTTCGAT
Found at i:77508765 original size:47 final size:47
Alignment explanation
Indices: 77508696--77508832 Score: 247
Period size: 47 Copynumber: 2.9 Consensus size: 47
77508686 TTGTTTTTCA
77508696 ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCTGAAC
1 ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCTGAAC
*
77508743 ATCTTTTCAATAAATCATGTTTCAAGAAGAGTTTTCAGATTCTGAAC
1 ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCTGAAC
* *
77508790 ATCTTTTCAATAAATCATGTTTTAAGAAGAGCATTCAGATTCT
1 ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCT
77508833 AAACTTCAAG
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.38
Consensus pattern (47 bp):
ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCTGAAC
Done.