Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 253 of 438
Found at i:78382334 original size:13 final size:13
Alignment explanation
Indices: 78382316--78382349 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
78382306 TTCGAAGGGT
78382316 ACATGGGCTAGTC
1 ACATGGGCTAGTC
78382329 ACATGGGCTAGTC
1 ACATGGGCTAGTC
78382342 ACATGGGC
1 ACATGGGC
78382350 ATGTGGTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.21
Consensus pattern (13 bp):
ACATGGGCTAGTC
Found at i:78385509 original size:40 final size:40
Alignment explanation
Indices: 78385449--78385612 Score: 161
Period size: 40 Copynumber: 4.1 Consensus size: 40
78385439 TGGGATTCAA
* ** * *
78385449 CCGGATATAACCACAAGCACAATTTCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
78385489 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
78385529 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * *
78385569 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
78385609 CCGG
1 CCGG
78385613 GTATCATTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:78389006 original size:40 final size:40
Alignment explanation
Indices: 78388899--78389022 Score: 140
Period size: 40 Copynumber: 3.1 Consensus size: 40
78388889 CGGGATTCAA
* * *
78388899 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* ** * *
78388939 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* * * *
78388979 CCGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
78389019 CCGG
1 CCGG
78389023 GTATCATTCA
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:78397083 original size:40 final size:40
Alignment explanation
Indices: 78396976--78397099 Score: 140
Period size: 40 Copynumber: 3.1 Consensus size: 40
78396966 CGGGATTCAA
* * *
78396976 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* ** * *
78397016 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* * * *
78397056 CCGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
78397096 CCGG
1 CCGG
78397100 GTATCATTCA
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:78403980 original size:85 final size:85
Alignment explanation
Indices: 78403856--78404089 Score: 294
Period size: 85 Copynumber: 2.8 Consensus size: 85
78403846 CAATTCCAAC
* * ** *
78403856 GTCCCGGACGTGGTCTTGCATGTAATTAAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA
1 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA
* *
78403921 AAATCAGGTACGATGTCGAT
66 AAATCAGATACGATGCCGAT
* *
78403941 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTATCCCAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA
78404006 AAATCAGATACGATGCCGAT
66 AAATCAGATACGATGCCGAT
* * * **
78404026 GTCCCATG-CATGGTCTTATATGTGAATCTC-A-ATCGAGGCATGTGTCCCAGACACAGTCTTAC
1 GTCCCA-GACATGGTCTTATATGT-AAT-TCAATATCGATGCCTCTGTCCCAGACAGGGTCTTAC
78404088 AC
63 AC
78404090 GATATCTCAG
Statistics
Matches: 131, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
85 124 0.95
86 5 0.04
87 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA
AAATCAGATACGATGCCGAT
Found at i:78403992 original size:43 final size:42
Alignment explanation
Indices: 78403856--78404088 Score: 143
Period size: 43 Copynumber: 5.5 Consensus size: 42
78403846 CAATTCCAAC
* * * * **
78403856 GTCCCGGACGTGGTCTTGCATGTAATTAAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAATTCAATA-CGATGCCGAT
* ** * * *
78403899 GTCCCAGACAGGGTCTTACA-CAAAATCAGGTACGATGTCGAT
1 GTCCCAGACATGGTCTTACATGTAATTCA-ATACGATGCCGAT
* **
78403941 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAATTCAATA-CGATGCCGAT
* * * *
78403984 ATCCCAGACAGGGTCTTACACG-AAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACATGTAATTCA-ATACGATGCCGAT
* * *
78404026 GTCCCATG-CATGGTCTTATATGTGAATCTCAAT-CGAGGCATG-T
1 GTCCCA-GACATGGTCTTACATGT-AAT-TCAATACGATGC-CGAT
**
78404069 GTCCCAGACACAGTCTTACA
1 GTCCCAGACATGGTCTTACA
78404089 CGATATCTCA
Statistics
Matches: 142, Mismatches: 38, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
42 61 0.43
43 73 0.51
44 5 0.04
45 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAATTCAATACGATGCCGAT
Found at i:78404041 original size:42 final size:42
Alignment explanation
Indices: 78403889--78404043 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
78403879 AATTAAATAT
** * * *
78403889 CGATGCCTCTGTCCCAGACAGGGTCTTACACAAAATCAGGTA
1 CGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATA
* * * *
78403931 CGATGTCGATGTCCCAGACATGGTCTTATATGTAATTCA-ATA
1 CGATGCCGATGTCCCAGACATGGTCTTACACG-AAATCAGATA
** * *
78403973 TCGATGCCTCTATCCCAGACAGGGTCTTACACGAAATCAGATA
1 -CGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATA
78404016 CGATGCCGATGTCCCATG-CATGGTCTTA
1 CGATGCCGATGTCCCA-GACATGGTCTTA
78404044 TATGTGAATC
Statistics
Matches: 88, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
42 54 0.61
43 34 0.39
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (42 bp):
CGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATA
Found at i:78408065 original size:86 final size:86
Alignment explanation
Indices: 78407957--78408128 Score: 308
Period size: 86 Copynumber: 2.0 Consensus size: 86
78407947 GGTGAAAAAC
* *
78407957 TCGATCTAGCAAATCCTCGATCGGCCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTTGATC
1 TCGATCTAGCAAACCCTCGATCGGCCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTCGATC
*
78408022 GGAGCCATTCTATACGGAGCT
66 GGAGCCATTCTATACGAAGCT
*
78408043 TCGATCTAGCAAACCCTCGATCGGTCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTCGATC
1 TCGATCTAGCAAACCCTCGATCGGCCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTCGATC
78408108 GGAGCCATTCTATACGAAGCT
66 GGAGCCATTCTATACGAAGCT
78408129 ATTGAAATCA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (86 bp):
TCGATCTAGCAAACCCTCGATCGGCCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTCGATC
GGAGCCATTCTATACGAAGCT
Found at i:78411393 original size:42 final size:42
Alignment explanation
Indices: 78411346--78411468 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
78411336 TGATGCCTCC
* *
78411346 GTCCCAGATAGGGTCTTACACGAAATCAGATACGATGCCGAT
1 GTCCCAGACAGGGTCTTACATGAAATCAGATACGATGCCGAT
* * * **
78411388 GTCCCAGACATGGTCTTATATGTAATTCA-ATATCGATGCCTCT
1 GTCCCAGACAGGGTCTTACATG-AAATCAGATA-CGATGCCGAT
* * *
78411431 ATCCCAGACAGGGTTTTACATAAAATCAGATACGATGC
1 GTCCCAGACAGGGTCTTACATGAAATCAGATACGATGC
78411469 ATGTAACACC
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATGAAATCAGATACGATGCCGAT
Found at i:78411427 original size:85 final size:85
Alignment explanation
Indices: 78411295--78411468 Score: 249
Period size: 85 Copynumber: 2.0 Consensus size: 85
78411285 ATCAAGTACA
* * * * *
78411295 ATGCCGACGTCCCGGATATGGTCTTACATGTAATTCAATATTGATGCCTCCGTCCCAGATAGGGT
1 ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCCATCCCAGACAGGGT
*
78411360 CTTACACGAAATCAGATACG
66 CTTACACAAAATCAGATACG
* * *
78411380 ATGCCGATGTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTATCCCAGACAGGGT
1 ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCCATCCCAGACAGGGT
* *
78411445 TTTACATAAAATCAGATACG
66 CTTACACAAAATCAGATACG
78411465 ATGC
1 ATGC
78411469 ATGTAACACC
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCCATCCCAGACAGGGT
CTTACACAAAATCAGATACG
Found at i:78411439 original size:43 final size:43
Alignment explanation
Indices: 78411303--78411451 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 43
78411293 CAATGCCGAC
* * * *
78411303 GTCCCGGATATGGTCTTACATGTAATTCAATATTGATGCCTCC
1 GTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCT
* * * * **
78411346 GTCCCAGATAGGGTCTTACACG-AAATCAGATA-CGATGCCGAT
1 GTCCCAGACATGGTCTTACATGTAATTCA-ATATCGATGCCTCT
*
78411388 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCT
* * *
78411431 ATCCCAGACAGGGTTTTACAT
1 GTCCCAGACATGGTCTTACAT
78411452 AAAATCAGAT
Statistics
Matches: 84, Mismatches: 19, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 32 0.38
43 52 0.62
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCT
Found at i:78413384 original size:27 final size:27
Alignment explanation
Indices: 78413344--78413397 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78413334 AGGTACAACC
* *
78413344 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
78413371 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
78413398 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:78417062 original size:29 final size:28
Alignment explanation
Indices: 78417029--78417131 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78417019 GGGACGAGAT
* *
78417029 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
78417058 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
78417087 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
78417116 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78417132 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:78424175 original size:40 final size:39
Alignment explanation
Indices: 78424130--78424337 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
78424120 CGGAATACAA
*
78424130 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78424170 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78424210 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
78424250 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
78424290 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
78424330 CCGGATAT
1 CCGGATAT
78424338 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:78424270 original size:80 final size:80
Alignment explanation
Indices: 78424130--78424336 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
78424120 CGGAATACAA
* * *
78424130 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
78424194 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
78424210 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
78424274 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
78424290 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
78424337 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:78432204 original size:40 final size:40
Alignment explanation
Indices: 78432159--78432365 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
78432149 CGGAATACAA
*
78432159 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
78432199 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
78432239 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *** * *
78432279 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAAT-GCCTTCGGGTCTTAGC
** * ** * *
78432319 CCGGATATAATTACTAGCATAAATGTCTTC-GGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
78432358 CCGGATAT
1 CCGGATAT
78432366 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 18 0.13
40 119 0.85
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:78441415 original size:78 final size:81
Alignment explanation
Indices: 78441270--78441451 Score: 221
Period size: 78 Copynumber: 2.3 Consensus size: 81
78441260 TCGAATGATG
* * * *
78441270 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
*
78441335 GTGCGAGTTAATA-AA
66 GTGCGAGTCAATATAA
* **
78441350 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
78441412 CGTGCGAGTCACTATAA
65 CGTGCGAGTCAATATAA
**
78441429 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78441452 TGAGCGAGTC
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 47 0.53
79 29 0.33
80 11 0.12
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATATAA
Found at i:78441444 original size:40 final size:40
Alignment explanation
Indices: 78441323--78441461 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
78441313 GGACTAGGAT
* * * *
78441323 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTTAGTC
* *
78441362 CCGAAGGCATT-GTGCAAGTTACTAAACCCGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTT-AGTC
*
78441401 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCCGGGCTTAGTC
* *
78441441 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
78441462 GTTATATCCG
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
37 1 0.01
38 20 0.23
39 23 0.27
40 38 0.44
41 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTTAGTC
Found at i:78449438 original size:77 final size:80
Alignment explanation
Indices: 78449295--78449475 Score: 217
Period size: 77 Copynumber: 2.3 Consensus size: 80
78449285 TCGAATGATG
* * * *
78449295 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
78449360 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
78449375 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
***
78449437 GTGCGAGTCGCTATAA
66 GTGCGAGTTAATA-AA
**
78449453 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78449476 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
77 31 0.36
78 30 0.34
79 15 0.17
80 11 0.13
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:78449473 original size:40 final size:40
Alignment explanation
Indices: 78449348--78449485 Score: 133
Period size: 38 Copynumber: 3.5 Consensus size: 40
78449338 GGACTAGGAT
* * * *
78449348 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTTAGTC
* *
78449387 CCGAAGGCATT-GTGCAAGTTACTAAACCCGGG-TTAAGT-
1 CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTT-AGTC
* *
78449425 CCGAAGGCATTCGTGCGAGTCGCTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCCGGGCTTAGTC
* *
78449465 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
78449486 GTTATATCCG
Statistics
Matches: 83, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
37 1 0.01
38 31 0.37
39 28 0.34
40 23 0.28
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTTAGTC
Found at i:78452340 original size:46 final size:46
Alignment explanation
Indices: 78452290--78452465 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
78452280 TGTTTGGGCA
* *
78452290 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
78452336 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
78452383 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
78452429 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78452466 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 69 0.66
47 35 0.34
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:78452445 original size:93 final size:93
Alignment explanation
Indices: 78452286--78452458 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
78452276 AGGATGTTTG
* * *
78452286 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
78452351 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
78452379 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
78452444 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
78452459 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:78461220 original size:71 final size:71
Alignment explanation
Indices: 78461136--78461279 Score: 279
Period size: 71 Copynumber: 2.0 Consensus size: 71
78461126 TACCTATGGA
*
78461136 TTAATTTGAGATATTATTGATAGAAATTATAAGTTGAGAAGGATTTATTCTGATTAAGTTGAAAA
1 TTAATTTGAGATATTATTGATAGAAATTATAAGTTGAGAAGGATTCATTCTGATTAAGTTGAAAA
78461201 TTTTGC
66 TTTTGC
78461207 TTAATTTGAGATATTATTGATAGAAATTATAAGTTGAGAAGGATTCATTCTGATTAAGTTGAAAA
1 TTAATTTGAGATATTATTGATAGAAATTATAAGTTGAGAAGGATTCATTCTGATTAAGTTGAAAA
78461272 TTTTGC
66 TTTTGC
78461278 TT
1 TT
78461280 GAGGACAAGC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.42
Consensus pattern (71 bp):
TTAATTTGAGATATTATTGATAGAAATTATAAGTTGAGAAGGATTCATTCTGATTAAGTTGAAAA
TTTTGC
Found at i:78471538 original size:53 final size:54
Alignment explanation
Indices: 78471454--78471649 Score: 182
Period size: 53 Copynumber: 3.6 Consensus size: 54
78471444 TTCCTTTTTA
* * * *
78471454 AACTTACCATTGCAATGTCTTGACATCGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
78471507 AACTCACCATTGCCATGCCTTGGCATGGTCTTATATGGGATCTTTGCCTTATAG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
78471561 TAGTTTATCAATT-CCATGTCC-TGACAAGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTA-CCATTGCCATG-CCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
78471616 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AACTTACCATTGCCATGCCTTGACATGGTCTTAC
78471650 TTAGAATCCA
Statistics
Matches: 110, Mismatches: 27, Indels: 11
0.74 0.18 0.07
Matches are distributed among these distances:
53 48 0.44
54 22 0.20
55 34 0.31
56 6 0.05
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:78476482 original size:40 final size:40
Alignment explanation
Indices: 78476386--78476564 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
78476376 CGAATGGTAT
* * * *
78476386 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
78476427 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
78476467 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
78476507 CCGGGCTAATTCCCGAAGGCAATTGTACGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
78476547 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
78476565 ACAATCGAGC
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
40 92 0.79
41 25 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:78476527 original size:80 final size:81
Alignment explanation
Indices: 78476386--78476564 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 81
78476376 CGAATGGTAT
* *
78476386 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
78476451 GTGCGAGTTACCAAAA
66 GTACGAATCACCAAAA
* * *
78476467 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
78476530 TGTACGAATCACTATAA
65 TGTACGAATCACCAAAA
*
78476547 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
78476565 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 58 0.68
81 26 0.31
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTACGAATCACCAAAA
Found at i:78476589 original size:80 final size:80
Alignment explanation
Indices: 78476420--78476590 Score: 191
Period size: 80 Copynumber: 2.1 Consensus size: 80
78476410 GTGCTAAGTG
* * * * *
78476420 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTACGAATCACCAAAACCGGGCTAAGTCCCGAAG
* * * * *
78476485 GCATTTGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
78476500 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTACGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTACGAATCACCAAAACCGGGCTAAGTCCCGAA
78476564 GACAATCGAGCGAGTC
65 GACAATCGAGCGAGTC
* *
78476580 GCTATATCCGG
1 ACTAAATCCGG
78476591 TTAAATTCTG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 1 0.01
80 74 0.99
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTACGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:78487750 original size:26 final size:27
Alignment explanation
Indices: 78487635--78487775 Score: 171
Period size: 27 Copynumber: 5.3 Consensus size: 27
78487625 CTGAAATGCA
* *
78487635 CTCGATTTGTAGAATTACCATTTTATC
1 CTCGATTTATAGAATTACCATTTTACC
78487662 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCATTTTACC
* *
78487689 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCATTTTACC
78487716 CTCGATTTATA-AAGTTACCA-TTTACC
1 CTCGATTTATAGAA-TTACCATTTTACC
* * * *
78487742 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTATAGAATTACCATTTTACC
78487769 CTCGATT
1 CTCGATT
78487776 GTGAAATTAC
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.01
26 20 0.20
27 78 0.78
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CTCGATTTATAGAATTACCATTTTACC
Found at i:78487764 original size:53 final size:54
Alignment explanation
Indices: 78487647--78487775 Score: 183
Period size: 53 Copynumber: 2.4 Consensus size: 54
78487637 CGATTTGTAG
* * *
78487647 AATTACCATTTTATCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
78487701 AATTACCGTTTTACCCTCGATTTATA-AAGTTACCA-TTTACCCTC-AGTTTACAA
1 AATTACCGTTTTACCCTCGATTTATAGAA-TTACCATTTTACCCTCGA-TTTACAA
*
78487754 AATTATCGTTTTACCCTCGATT
1 AATTACCGTTTTACCCTCGATT
78487776 GTGAAATTAC
Statistics
Matches: 69, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
52 1 0.01
53 38 0.55
54 30 0.43
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
Found at i:78487837 original size:27 final size:27
Alignment explanation
Indices: 78487807--78487984 Score: 175
Period size: 27 Copynumber: 6.6 Consensus size: 27
78487797 TGTAGGATAG
78487807 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* ** * *
78487834 AATTACCGAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
78487861 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
78487888 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
78487915 AATTATCGAAATA-CCCTCAATTTTTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
78487942 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
78487969 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
78487985 TTGACTTTCT
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 8 0.06
27 108 0.87
28 8 0.06
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:78487845 original size:54 final size:54
Alignment explanation
Indices: 78487765--78487956 Score: 167
Period size: 54 Copynumber: 3.6 Consensus size: 54
78487755 ATTATCGTTT
* * *
78487765 TACCCTCGA-TTGTGAAATTACTGAAATACCACT-GTAGGAT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCGAAATACCACTGGTAGG-TGA-AATTACCAAAA
* * ** *
78487818 TACCC-CTAGTTTGTAAAATTACCGAAATACCATTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCGAAATACCACTGGTAGGTGAAATTACCAAAA
* * * ** * * *
78487872 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAA
1 TACCCTCAATTTGTAAAATTACCGAAATACCACTGGTAGGTGAAATTACCAAAA
* *
78487926 TACCCTCAATTTTTAAAATTACCAAAATACC
1 TACCCTCAATTTGTAAAATTACCGAAATACC
78487957 CCTGATTTAC
Statistics
Matches: 118, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 5 0.04
54 107 0.91
55 5 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCGAAATACCACTGGTAGGTGAAATTACCAAAA
Found at i:78487872 original size:81 final size:80
Alignment explanation
Indices: 78487774--78487929 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 80
78487764 TTACCCTCGA
* * *
78487774 TTGTGAAATTACTGAAATACCACT-GTAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAATT
1 TTGTGAAATTACCGAAATACC-CTAATAGG-TAAAATTACCAAAATACCCCTAGTTTGTAAAATT
78487838 ACCGAAATACCATTGGT
64 ACCGAAATACCATTGGT
**
78487855 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACCGAAATACCCT-AATAGGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTA
*
78487920 TCGAAATACC
65 CCGAAATACC
78487930 CTCAATTTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 63 0.94
82 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (80 bp):
TTGTGAAATTACCGAAATACCCTAATAGGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
CGAAATACCATTGGT
Found at i:78487957 original size:54 final size:52
Alignment explanation
Indices: 78487827--78487985 Score: 201
Period size: 54 Copynumber: 2.9 Consensus size: 52
78487817 ATACCCCTAG
* ** *
78487827 TTTGTAAAATTACCGAAATACCATTGGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTA-CGAAATACCCTCAA
78487881 TTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTA-CGAAATACCCTCAA
* **
78487935 TTTTTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCT
1 TTTGTAAAATTACCAAAATACCCCTG-TTTGTAAAATTAC-GAAATACCCT
78487986 TGACTTTCTA
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 2 0.02
54 92 0.98
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (52 bp):
TTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACGAAATACCCTCAA
Found at i:78487971 original size:81 final size:81
Alignment explanation
Indices: 78487807--78488014 Score: 231
Period size: 81 Copynumber: 2.5 Consensus size: 81
78487797 TGTAGGATAG
* *** * *
78487807 AATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCATTGGTTTGTGAAATTACCGAAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCATCAATTTGTAAAATTACCAAAA
**
78487872 TACCCTCAATTTGTAA
66 TACCCTCAATTTACAA
* *
78487888 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCCTCAATTTTTAAAATTACCAAAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCATCAATTTGTAAAATTACCAAAA
*
78487953 TACCC-CTGATTTACAA
66 TACCCTC-AATTTACAA
* * * *
78487969 AATTA-CAGAAATACCCTTGACTTTCTAAAAATTATAGAAATACCAT
1 AATTACCA-AAATACCCCT-AGTTTGT-AAAATTATCGAAATACCAT
78488015 TGGTTTAAAA
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 3 0.03
81 82 0.77
82 5 0.05
83 17 0.16
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCATCAATTTGTAAAATTACCAAAA
TACCCTCAATTTACAA
Found at i:78488035 original size:27 final size:27
Alignment explanation
Indices: 78487832--78488047 Score: 103
Period size: 27 Copynumber: 7.9 Consensus size: 27
78487822 CCTAGTTTGT
* * **
78487832 AAAATTACCGAAATACCATTGGTTTGT
1 AAAATTACTGAAATACCCTTGGTTTAA
* * *** **
78487859 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTTGGTTTAA
** * * **
78487886 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTGAAATACCCTTGGTTTAA
*** **
78487913 AAAATTA-TCGAAATACCCTCAATTTTT
1 AAAATTACT-GAAATACCCTTGGTTTAA
** * * *
78487940 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAA
* * *
78487967 AAAATTACAGAAATACCCTTGACTTTCTA
1 AAAATTACTGAAATACCCTTG-GTTT-AA
*
78487996 AAAATTA-TAGAAATACCATTGGTTTAA
1 AAAATTACT-GAAATACCCTTGGTTTAA
78488023 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
78488048 GTAGATTTAC
Statistics
Matches: 149, Mismatches: 34, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
27 124 0.83
28 7 0.05
29 18 0.12
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAA
Found at i:78490164 original size:40 final size:40
Alignment explanation
Indices: 78490119--78490306 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
78490109 GCTACTTGCT
78490119 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
78490159 TAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
78490199 CAAATGCCTTCGGGACTTAGTCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
78490239 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
78490278 CAAATGCCTTCGGGACTTAGCTCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
78490307 CATCCGAATA
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 99 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:78492285 original size:25 final size:24
Alignment explanation
Indices: 78492247--78492316 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
78492237 AGGAAGTACT
* *
78492247 AAAAGGGCTCTGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
78492271 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
78492296 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
78492317 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:78492329 original size:24 final size:23
Alignment explanation
Indices: 78492247--78492343 Score: 86
Period size: 25 Copynumber: 4.0 Consensus size: 23
78492237 AGGAAGTACT
* * *
78492247 AAAAGGGCTCTGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAG-TTATC
78492271 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
*
78492296 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
78492320 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
78492344 ATGATAAAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.06
24 13 0.21
25 46 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:78492401 original size:20 final size:20
Alignment explanation
Indices: 78492372--78492410 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
78492362 TACCAGTGGA
78492372 GAGTTTGGTTGG-ATGGGTT
1 GAGTTTGGTTGGTATGGGTT
78492391 GAGTCTTGGTTGGTATGGGT
1 GAGT-TTGGTTGGTATGGGT
78492411 GGAGAGTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 8 0.44
21 6 0.33
ACGTcount: A:0.10, C:0.03, G:0.46, T:0.41
Consensus pattern (20 bp):
GAGTTTGGTTGGTATGGGTT
Found at i:78492493 original size:42 final size:42
Alignment explanation
Indices: 78492446--78492579 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
78492436 TAGTCTCCCT
78492446 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
78492488 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
78492530 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
78492572 AAATGGGC
1 AAATGGGC
78492580 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:78492638 original size:31 final size:31
Alignment explanation
Indices: 78492603--78492681 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
78492593 CGTTTACAGT
*
78492603 AAAGGTTTCGGCCCAGTGATATGATTTGTGA
1 AAAGGTTTCGGCCCAGTGATATGATTTATGA
*
78492634 AAAGGTTTCGACCCAGTGATATGATTTATGA
1 AAAGGTTTCGGCCCAGTGATATGATTTATGA
*
78492665 AAAGGCTTCGGCCCAGT
1 AAAGGTTTCGGCCCAGT
78492682 AACTGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGTTTCGGCCCAGTGATATGATTTATGA
Found at i:78497317 original size:29 final size:29
Alignment explanation
Indices: 78497284--78497357 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
78497274 GTGACGAGAT
78497284 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
78497313 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
78497342 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78497358 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:78497373 original size:29 final size:29
Alignment explanation
Indices: 78497341--78497416 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
78497331 CTGGAAATAT
* *
78497341 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
78497370 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
78497399 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
78497417 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:78497384 original size:58 final size:58
Alignment explanation
Indices: 78497284--78497416 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
78497274 GTGACGAGAT
* * * * * *
78497284 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
78497342 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
78497400 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
78497417 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:78505195 original size:29 final size:29
Alignment explanation
Indices: 78505162--78505235 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
78505152 GTGACGAGAT
78505162 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
78505191 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
78505220 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78505236 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:78505251 original size:29 final size:29
Alignment explanation
Indices: 78505219--78505294 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
78505209 CTGGAAATAT
* *
78505219 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
78505248 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
78505277 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
78505295 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:78505262 original size:58 final size:58
Alignment explanation
Indices: 78505162--78505294 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
78505152 GTGACGAGAT
* * * * * *
78505162 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
78505220 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
78505278 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
78505295 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:78507346 original size:32 final size:32
Alignment explanation
Indices: 78507307--78507373 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
78507297 TAACCTATTT
78507307 AAAAGTTAGAACCAAACTATCATACATCAATA
1 AAAAGTTAGAACCAAACTATCATACATCAATA
78507339 AAAAGTTAGAACCAAACTATCATACATCAATA
1 AAAAGTTAGAACCAAACTATCATACATCAATA
78507371 AAA
1 AAA
78507374 TAGTGCATGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.55, C:0.18, G:0.06, T:0.21
Consensus pattern (32 bp):
AAAAGTTAGAACCAAACTATCATACATCAATA
Found at i:78511927 original size:20 final size:20
Alignment explanation
Indices: 78511902--78511963 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
78511892 AGTTTAAAGT
78511902 TTGGTAGCTTAGCATAATGC
1 TTGGTAGCTTAGCATAATGC
* *
78511922 TTGGTATG-TT----TAAAGT
1 TTGGTA-GCTTAGCATAATGC
78511938 TTGGTAGCTTAGCATAATGC
1 TTGGTAGCTTAGCATAATGC
78511958 TTGGTA
1 TTGGTA
78511964 TGTGCTTAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
15 1 0.03
16 12 0.38
20 18 0.56
21 1 0.03
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (20 bp):
TTGGTAGCTTAGCATAATGC
Found at i:78511940 original size:36 final size:36
Alignment explanation
Indices: 78511893--78511966 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
78511883 GTATGTGATA
78511893 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
1 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
78511929 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
1 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
78511965 GT
1 GT
78511967 GCTTAGCTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.24, C:0.08, G:0.26, T:0.42
Consensus pattern (36 bp):
GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
Found at i:78521871 original size:29 final size:28
Alignment explanation
Indices: 78521839--78521941 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78521829 GTGACGAGAT
* *
78521839 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
78521868 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
78521897 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
78521926 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78521942 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:78531369 original size:29 final size:28
Alignment explanation
Indices: 78531337--78531439 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78531327 GTGACGAGAT
* *
78531337 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
78531366 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
78531395 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
78531424 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78531440 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:78537250 original size:21 final size:19
Alignment explanation
Indices: 78537225--78537264 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
78537215 ATATGTAACT
*
78537225 TAATATTCATCATCACCATAA
1 TAATA-TCATCA-CACAATAA
78537246 TAATATCATCACACAATAA
1 TAATATCATCACACAATAA
78537265 ACTTCCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 6 0.33
21 5 0.28
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (19 bp):
TAATATCATCACACAATAA
Found at i:78542871 original size:20 final size:20
Alignment explanation
Indices: 78542844--78542907 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
78542834 ATAGTTTAAA
78542844 GTTTGGTAGCTTAGCATAAT
1 GTTTGGTAGCTTAGCATAAT
* *
78542864 GCTTGGTATG-TT----TAAA
1 GTTTGGTA-GCTTAGCATAAT
78542880 GTTTGGTAGCTTAGCATAAT
1 GTTTGGTAGCTTAGCATAAT
78542900 GTTTGGTA
1 GTTTGGTA
78542908 TGTGCTTAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
15 1 0.03
16 12 0.35
20 20 0.59
21 1 0.03
ACGTcount: A:0.23, C:0.08, G:0.27, T:0.42
Consensus pattern (20 bp):
GTTTGGTAGCTTAGCATAAT
Found at i:78542884 original size:36 final size:36
Alignment explanation
Indices: 78542837--78542910 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
78542827 GTATGTGATA
78542837 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
1 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
*
78542873 GTTTAAAGTTTGGTAGCTTAGCATAATGTTTGGTAT
1 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
78542909 GT
1 GT
78542911 GCTTAGCTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.24, C:0.07, G:0.26, T:0.43
Consensus pattern (36 bp):
GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
Found at i:78546787 original size:49 final size:49
Alignment explanation
Indices: 78546694--78546795 Score: 123
Period size: 49 Copynumber: 2.1 Consensus size: 49
78546684 GACATTCTAG
* * * * *
78546694 AATGGATAAATAGTGATAAGAGTGTAGACAGTGGAAAACTAAGTTTAGC
1 AATGGATAAATAGTGATAAAAGTGTAGACACTAGAAAACCAAGTTTAGA
* * **
78546743 AATGTATAAATAGTGATAAAATTGTAGACACTAGAAGGCCAAGTTTAGA
1 AATGGATAAATAGTGATAAAAGTGTAGACACTAGAAAACCAAGTTTAGA
78546792 AATG
1 AATG
78546796 CATAGCATAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.44, C:0.07, G:0.24, T:0.25
Consensus pattern (49 bp):
AATGGATAAATAGTGATAAAAGTGTAGACACTAGAAAACCAAGTTTAGA
Found at i:78547136 original size:29 final size:29
Alignment explanation
Indices: 78547103--78547159 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
78547093 CTCATGCCTC
*
78547103 CGAATGGTGTCTTGCACACTCACCAAATT
1 CGAATGGTGTCCTGCACACTCACCAAATT
78547132 CGAATGGTGTCCTGCACACTCACCAAAT
1 CGAATGGTGTCCTGCACACTCACCAAAT
78547160 AGGTTAGTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
CGAATGGTGTCCTGCACACTCACCAAATT
Found at i:78556984 original size:93 final size:93
Alignment explanation
Indices: 78556872--78557044 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
78556862 CGCCCATAAG
* *
78556872 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
78556937 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
78556965 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
78557030 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
78557045 CAAATATCCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:78557040 original size:46 final size:46
Alignment explanation
Indices: 78556865--78557040 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
78556855 TGTAACCCGC
* *
78556865 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
78556911 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* *
78556961 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
78557004 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
78557041 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:78559461 original size:29 final size:29
Alignment explanation
Indices: 78559422--78559509 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
78559412 CAAAGATAAC
*
78559422 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
78559451 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
78559480 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
78559510 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:78559480 original size:15 final size:15
Alignment explanation
Indices: 78559422--78559500 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
78559412 CAAAGATAAC
*
78559422 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
78559436 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
78559451 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
78559465 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
78559480 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
78559495 AAGAAA
1 AAGAAA
78559501 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:78559509 original size:15 final size:15
Alignment explanation
Indices: 78559433--78559509 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
78559423 AGAAAACCGA
78559433 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
78559448 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
78559462 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
78559476 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
78559492 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
78559507 ATA
1 ATA
78559510 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:78562565 original size:93 final size:93
Alignment explanation
Indices: 78562432--78562604 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
78562422 CGCCCATAAG
* *
78562432 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
78562497 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * *
78562525 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTT-GCATCCATAAGTGAACTCGGATTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCACATCCATAAGTGAACTCGGACTCAACTC
*
78562589 AACGAGTTCGGATGCC
65 AACGAGCTCGGATGCC
78562605 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:78562600 original size:46 final size:46
Alignment explanation
Indices: 78562425--78562600 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
78562415 TGTAACCCGC
* *
78562425 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCG-TTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTT-ACAT
* *
78562471 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-C---TTACAT
* * *
78562521 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTTACAT
* * *
78562564 CCATAAGTGAACTCGGATTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
78562601 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTTACAT
Found at i:78562619 original size:46 final size:46
Alignment explanation
Indices: 78562476--78562619 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 46
78562466 CACATCCATA
* * *
78562476 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATCCC
* * * * *
78562524 A-CGAACTCGGACTCAACTCAACGAGTTCGGA--CGCTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC--C
* * *
78562569 AGTGAACTCGGATTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCC
78562615 AGTGA
1 AGTGA
78562620 CATGTCACTT
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
43 5 0.07
45 2 0.03
46 33 0.44
47 28 0.37
48 7 0.09
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCC
Found at i:78565585 original size:20 final size:20
Alignment explanation
Indices: 78565560--78565597 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78565550 ACGGAATTCC
*
78565560 ATTTCTCTATTTATCCATAT
1 ATTTCTCCATTTATCCATAT
*
78565580 ATTTCTCCATTTTTCCAT
1 ATTTCTCCATTTATCCAT
78565598 TTCTAACATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTCTCCATTTATCCATAT
Found at i:78569549 original size:13 final size:13
Alignment explanation
Indices: 78569531--78569596 Score: 62
Period size: 13 Copynumber: 5.1 Consensus size: 13
78569521 AGTTTAGCAT
*
78569531 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
78569544 TGCTTTTAAAAAA
1 TGCTTTTGAAAAG
* *
78569557 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
78569570 TGATTTTGAGAAA-
1 TGCTTTTGA-AAAG
78569583 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
78569596 T
1 T
78569597 TTGGTTTAAG
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
12 3 0.08
13 34 0.85
14 3 0.08
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:78569560 original size:26 final size:26
Alignment explanation
Indices: 78569531--78569596 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
78569521 AGTTTAGCAT
* *
78569531 TGCTTTTGAGAAGTGCTTTTAAAAAA
1 TGCTTTTGAAAAGTGATTTTAAAAAA
* * * *
78569557 TGCTGTGGAAAAGTGATTTTGAGAAA
1 TGCTTTTGAAAAGTGATTTTAAAAAA
78569583 TGCTTTTGAAAAGT
1 TGCTTTTGAAAAGT
78569597 TTGGTTTAAG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGATTTTAAAAAA
Found at i:78569910 original size:23 final size:23
Alignment explanation
Indices: 78569875--78569931 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
78569865 TTTTAAACAA
*
78569875 TAAA-ATATGATCAATAAAAATT
1 TAAATATATAATCAATAAAAATT
78569897 TAAATATATAATCAATAAAAATT
1 TAAATATATAATCAATAAAAATT
78569920 TAAATATATAAT
1 TAAATATATAAT
78569932 ATTATATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 4 0.12
23 29 0.88
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAATATATAATCAATAAAAATT
Found at i:78572351 original size:26 final size:25
Alignment explanation
Indices: 78572316--78572370 Score: 101
Period size: 26 Copynumber: 2.2 Consensus size: 25
78572306 ACACCACTCA
78572316 TCTAGAGTCTCCTGTTTCTAGTAGT
1 TCTAGAGTCTCCTGTTTCTAGTAGT
78572341 TCTAGGAGTCTCCTGTTTCTAGTAGT
1 TCTA-GAGTCTCCTGTTTCTAGTAGT
78572367 TCTA
1 TCTA
78572371 TCTTTGATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.44
Consensus pattern (25 bp):
TCTAGAGTCTCCTGTTTCTAGTAGT
Found at i:78574616 original size:39 final size:39
Alignment explanation
Indices: 78574562--78574802 Score: 428
Period size: 39 Copynumber: 6.2 Consensus size: 39
78574552 TGTGTATGAA
*
78574562 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
78574601 TGTGCTAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
78574640 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
78574679 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
78574718 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
78574757 TGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
78574797 TGTGCG
1 TGTGCG
78574803 GGTTACCATA
Statistics
Matches: 195, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
39 178 0.91
40 17 0.09
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:78582849 original size:40 final size:39
Alignment explanation
Indices: 78582680--78582851 Score: 301
Period size: 39 Copynumber: 4.4 Consensus size: 39
78582670 TGATATGCTG
78582680 CGAAGGCAATTGTGCGAG-TGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
78582718 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
*
78582757 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
*
78582796 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCC
1 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CC
*
78582836 CGAAGGCATTTGTGCG
1 CGAAGGCAATTGTGCG
78582852 GGTTACCATA
Statistics
Matches: 128, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
38 18 0.14
39 93 0.73
40 17 0.13
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
Found at i:78582867 original size:40 final size:39
Alignment explanation
Indices: 78582680--78582882 Score: 291
Period size: 39 Copynumber: 5.2 Consensus size: 39
78582670 TGATATGCTG
*
78582680 CGAAGGCAATTGTGCGAG-TGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
*
78582718 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
78582757 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
* *
78582796 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAG-CC
* * ** * *
78582836 CGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAG-CC
78582876 CGAAGGC
1 CGAAGGC
78582883 GTTTGAACGA
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
38 18 0.12
39 93 0.61
40 41 0.27
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (39 bp):
CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
Found at i:78582909 original size:79 final size:78
Alignment explanation
Indices: 78582680--78582920 Score: 247
Period size: 78 Copynumber: 3.1 Consensus size: 78
78582670 TGATATGCTG
* * ** *
78582680 CGAAGGCAATTGTGCGAGTGT--GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGAT
1 CGAAGGCAATTGTGCGAGT-TACCATAACCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGAT
*
78582743 ATCCGGGCTAAGCC
65 ATCCGGGTTAAGCC
** * ** *
78582757 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATA
1 CGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATA
78582822 TCCGGGTTAAGTCC
66 TCCGGGTTAAG-CC
* * * **
78582836 CGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-A
1 CGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGA
*
78582900 TATCC-GGTTAAACTC
64 TATCCGGGTTAAGC-C
78582915 CGAAGG
1 CGAAGG
78582921 TATGTGATTT
Statistics
Matches: 145, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
76 1 0.01
77 19 0.13
78 54 0.37
79 46 0.32
80 24 0.17
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (78 bp):
CGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATA
TCCGGGTTAAGCC
Found at i:78588048 original size:38 final size:39
Alignment explanation
Indices: 78587877--78588115 Score: 410
Period size: 39 Copynumber: 6.2 Consensus size: 39
78587867 TGTGTATGAA
*
78587877 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
78587916 TGTGCTAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
78587955 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
78587994 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
78588033 TG-GCGAGTTGTGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
78588070 TGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
78588110 TGTGCG
1 TGTGCG
78588116 GGTTACCATA
Statistics
Matches: 191, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
37 13 0.07
38 46 0.24
39 116 0.61
40 16 0.08
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:78588131 original size:116 final size:117
Alignment explanation
Indices: 78587894--78588146 Score: 384
Period size: 116 Copynumber: 2.2 Consensus size: 117
78587884 ATTGTGATAT
*
78587894 CCGGGCTAAGCCCGAAGGCAATTGTGCTAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
* *** *
78587959 CGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATAT
66 CGAGTTGTGATATCCAGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAA
78588011 CCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTGTGATATCCGGGCTAAG-CCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
* * *
78588074 CGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
66 CGAGTTGTGATATCCAGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAA
*
78588127 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
78588147 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
115 36 0.29
116 55 0.44
117 33 0.27
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (117 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGTTGTGATATCCAGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:78595211 original size:30 final size:30
Alignment explanation
Indices: 78595177--78595237 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
78595167 TCCTTAACTC
78595177 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
78595207 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
78595237 A
1 A
78595238 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:78610058 original size:30 final size:30
Alignment explanation
Indices: 78610024--78610084 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
78610014 TCCTTAACTC
78610024 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
78610054 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
78610084 A
1 A
78610085 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:78611302 original size:26 final size:26
Alignment explanation
Indices: 78611273--78611335 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
78611263 TAACAAATAA
78611273 TAAGTCACTTTTGCATTTTACACGAT
1 TAAGTCACTTTTGCATTTTACACGAT
*
78611299 TAAGTCACTTTTGCATTTTATACGAT
1 TAAGTCACTTTTGCATTTTACACGAT
78611325 TAAGTCA-TTTT
1 TAAGTCACTTTT
78611336 ATTAAATCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 4 0.11
26 32 0.89
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (26 bp):
TAAGTCACTTTTGCATTTTACACGAT
Found at i:78612062 original size:14 final size:16
Alignment explanation
Indices: 78612032--78612064 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
78612022 TTTCATCTTT
78612032 TTTATTATTTATCATC
1 TTTATTATTTATCATC
78612048 TTTATT-TTT-TCATC
1 TTTATTATTTATCATC
78612062 TTT
1 TTT
78612065 CCAATCCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 3 0.18
16 6 0.35
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTATTTATCATC
Found at i:78618137 original size:28 final size:28
Alignment explanation
Indices: 78618091--78618159 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
78618081 TTTAAAACCC
*
78618091 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
78618118 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
78618146 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
78618160 TGATCTACAC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:78619814 original size:20 final size:20
Alignment explanation
Indices: 78619791--78619828 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78619781 CACATCCAAA
*
78619791 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
78619811 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
78619829 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:78620545 original size:26 final size:27
Alignment explanation
Indices: 78620516--78620573 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
78620506 TACGAGGGCC
*
78620516 AAAATTGTCAAAA-TTTTGTCAGAGGT
1 AAAATCGTCAAAAGTTTTGTCAGAGGT
**
78620542 AAAATCGTCAAAAGTTTTGTTGGAGGT
1 AAAATCGTCAAAAGTTTTGTCAGAGGT
78620569 AAAAT
1 AAAAT
78620574 AGGGATGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 12 0.43
27 16 0.57
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.33
Consensus pattern (27 bp):
AAAATCGTCAAAAGTTTTGTCAGAGGT
Found at i:78622849 original size:6 final size:6
Alignment explanation
Indices: 78622831--78622998 Score: 121
Period size: 6 Copynumber: 27.3 Consensus size: 6
78622821 TAGAAATATT
*
78622831 ATCAGA A-CTAGA ATCAGA ACCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
78622879 ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGT ATCAAGTA A-CCGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA
* * *
78622929 ATCAGA ATCAGC ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAAGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATC-AG-A
* *
78622980 A-CAGA ATCAAA ATTAGA AT
1 ATCAGA ATCAGA ATCAGA AT
78622999 GTGAATGCAA
Statistics
Matches: 127, Mismatches: 21, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
5 8 0.06
6 103 0.81
7 12 0.09
8 4 0.03
ACGTcount: A:0.49, C:0.17, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:78622854 original size:18 final size:18
Alignment explanation
Indices: 78622840--78622988 Score: 81
Period size: 19 Copynumber: 8.1 Consensus size: 18
78622830 TATCAGAACT
78622840 AGAATCAGAACCAGAATC
1 AGAATCAGAACCAGAATC
*
78622858 AGAATCAGAATCAGAATC
1 AGAATCAGAACCAGAATC
* *
78622876 AGAATTAGGTGA-CAGAATC
1 AGAATCA-G-AACCAGAATC
* *
78622895 AGAATCAGAATCAGTATC
1 AGAATCAGAACCAGAATC
* * *
78622913 AAGTAA-CCGAATCAAAATC
1 -AG-AATCAGAACCAGAATC
* *
78622932 AGAATCAGCATCAGGTAA-C
1 AGAATCAGAACCA-G-AATC
* *
78622951 AGAATCAAAATCAGAATC
1 AGAATCAGAACCAGAATC
*
78622969 AGTATCAAGTAA-CAGAATC
1 AGAATC-AG-AACCAGAATC
78622988 A
1 A
78622989 AAATTAGAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
17 5 0.05
18 45 0.43
19 47 0.45
20 7 0.07
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
AGAATCAGAACCAGAATC
Found at i:78622895 original size:31 final size:31
Alignment explanation
Indices: 78622857--78622998 Score: 194
Period size: 31 Copynumber: 4.6 Consensus size: 31
78622847 GAACCAGAAT
* * * * *
78622857 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
*
78622888 CAGAATCAGAATCAGAATCAGTATCAAGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
* * *
78622919 CCGAATCAAAATCAGAATCAGCATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
78622950 CAGAATCAAAATCAGAATCAGTATCAAGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
*
78622981 CAGAATCAAAATTAGAAT
1 CAGAATCAAAATCAGAAT
78622999 GTGAATGCAA
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 99 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAAGTAA
Found at i:78622936 original size:62 final size:62
Alignment explanation
Indices: 78622857--78622998 Score: 221
Period size: 62 Copynumber: 2.3 Consensus size: 62
78622847 GAACCAGAAT
* * * *
78622857 CAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTATCAAGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAATCAGTATCAAGTAA
* *
78622919 CCGAATCAAAATCAGAATCAGCATCAGGTAACAGAATCAAAATCAGAATCAGTATCAAGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAATCAGTATCAAGTAA
*
78622981 CAGAATCAAAATTAGAAT
1 CAGAATCAAAATCAGAAT
78622999 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 72 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (62 bp):
CAGAATCAAAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAATCAGTATCAAGTAA
Found at i:78623172 original size:27 final size:26
Alignment explanation
Indices: 78623130--78623203 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
78623120 GCTCAGTTAT
* * *
78623130 CAGATATTATGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
78623157 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
78623183 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
78623204 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 20 0.48
27 22 0.52
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:78623193 original size:26 final size:27
Alignment explanation
Indices: 78623142--78623203 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
78623132 GATATTATGA
* *
78623142 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAGATAATGTGG
78623169 CAGAGCCACCAGA-ACAGATAATGTGG
1 CAGAGCCACCAGATACAGATAATGTGG
*
78623195 CAAAGCCAC
1 CAGAGCCAC
78623204 TTAACAGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 20 0.62
27 12 0.38
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (27 bp):
CAGAGCCACCAGATACAGATAATGTGG
Found at i:78623390 original size:22 final size:22
Alignment explanation
Indices: 78623362--78623426 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
78623352 GTAAATACGT
*
78623362 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
78623384 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
78623406 TTAACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
78623427 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:78623909 original size:27 final size:27
Alignment explanation
Indices: 78623853--78624047 Score: 250
Period size: 27 Copynumber: 7.3 Consensus size: 27
78623843 GGGGCAAAAT
* * *
78623853 GGTAATTTTACCCCACA-AGGTA-TCTC
1 GGTAATTCTACCCTACAGGGGTATTC-C
*
78623879 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
78623906 GGTAATTCTACCCTACAAGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
78623933 GGTAATTCTACCTTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
* * * *
78623960 GATAATTATACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
78623987 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
78624014 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
78624041 GATAATT
1 GGTAATT
78624048 TTGTAAATTG
Statistics
Matches: 148, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 15 0.10
27 132 0.89
28 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTCC
Found at i:78624063 original size:54 final size:54
Alignment explanation
Indices: 78623897--78624077 Score: 156
Period size: 54 Copynumber: 3.4 Consensus size: 54
78623887 TACCCTACAG
* * * * *
78623897 GGGTATTGCGGTAATTCTACCCTACAAGGGTATTCCGGTAA--TTCTACCTTACA
1 GGGTATTCCGGTAATTCTACCCTACAAGGGTATTTCGATAATTTTCTACATT-GA
* * *
78623950 GGGGTATTCCGATAATTATACCCTACAAGGGTATTTCGATAATTCTACCCTACA--G-
1 -GGGTATTCCGGTAATTCTACCCTACAAGGGTATTTCGATAATT-T--TCTACATTGA
* * *
78624005 GGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCGATAATTTTGTAAATTGA
1 GGGTATTCCGGTAATTCTACCCTACAAGGGTATTTCGATAATTTTCTACATTGA
***
78624059 GGGTAAAACGGTAATTCTA
1 GGGTATTCCGGTAATTCTA
78624078 TAAATCAGGG
Statistics
Matches: 102, Mismatches: 17, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
51 3 0.03
53 2 0.02
54 92 0.90
57 1 0.01
59 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (54 bp):
GGGTATTCCGGTAATTCTACCCTACAAGGGTATTTCGATAATTTTCTACATTGA
Found at i:78624074 original size:81 final size:80
Alignment explanation
Indices: 78623905--78624077 Score: 206
Period size: 81 Copynumber: 2.1 Consensus size: 80
78623895 AGGGGTATTG
*
78623905 CGGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCTTACAGGGGTATTCCGATAATTATA
1 CGGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGATAATTATA
* ***
78623970 CCCTACAAGGGTATTT
66 -CCTAAAAGGGTAAAA
* * *
78623986 CGATAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCGATAATT-T-
1 CGGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGATAATTATA
**
78624049 TGTAAATTGAGGGTAAAA
66 CCTAAA---AGGGTAAAA
78624067 CGGTAATTCTA
1 CGGTAATTCTA
78624078 TAAATCAGGG
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.04
80 1 0.01
81 74 0.95
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (80 bp):
CGGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGATAATTATA
CCTAAAAGGGTAAAA
Found at i:78624325 original size:27 final size:27
Alignment explanation
Indices: 78624068--78624318 Score: 261
Period size: 27 Copynumber: 9.3 Consensus size: 27
78624058 AGGGTAAAAC
* * * *
78624068 GGTAATTCTATAAATCAGGGGTACTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
**
78624095 GGTAATTTTACAAGTC-GAGGGTATTTT
1 GGTAATTTTACAAACCAG-GGGTATTTT
** *** * *
78624122 AATAATTTTACAGGTCAAGGGTATTTC
1 GGTAATTTTACAAACCAGGGGTATTTT
* * * *
78624149 AGTAATTTCACAAATCAGGGATATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
78624176 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
78624203 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
78624230 GGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* * * *
78624257 GGTGATTTTATAAACCAAGGGTATTCT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
78624284 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
78624311 GGTAATTT
1 GGTAATTT
78624319 GGTAAACTAA
Statistics
Matches: 188, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 187 0.99
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAACCAGGGGTATTTT
Found at i:78626280 original size:6 final size:6
Alignment explanation
Indices: 78626262--78626417 Score: 88
Period size: 6 Copynumber: 25.3 Consensus size: 6
78626252 AAGAAACATT
* *
78626262 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA CTCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * * *
78626309 GTGACAGA ATCAGA ATCAGT ATTAGGTA A-CCGA ATCAAA ATTAGA ATCAGC
1 AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
* * *
78626360 ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
78626410 ATCAGA AT
1 ATCAGA AT
78626418 GTGAATGCAA
Statistics
Matches: 112, Mismatches: 24, Indels: 28
0.68 0.15 0.17
Matches are distributed among these distances:
5 8 0.07
6 90 0.80
7 10 0.09
8 4 0.04
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:78626283 original size:18 final size:18
Alignment explanation
Indices: 78626262--78626417 Score: 88
Period size: 19 Copynumber: 8.4 Consensus size: 18
78626252 AAGAAACATT
78626262 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
*
78626280 ATCAGAATCAGACTCAGA
1 ATCAGAATCAGAATCAGA
* *
78626298 ATCAGAATTAG-GTGACAGA
1 ATCAGAATCAGAAT--CAGA
* *
78626317 ATCAGAATCAGTATTAGGTA
1 ATCAGAATCAGAATCA-G-A
* * *
78626337 A-CCGAATCAAAATTAGA
1 ATCAGAATCAGAATCAGA
*
78626354 ATCAGCATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
78626373 ATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
*
78626391 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAGA
78626410 ATCAGAAT
1 ATCAGAAT
78626418 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 19, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
17 7 0.07
18 42 0.40
19 50 0.47
20 7 0.07
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:78626320 original size:31 final size:31
Alignment explanation
Indices: 78626316--78626417 Score: 168
Period size: 31 Copynumber: 3.3 Consensus size: 31
78626306 TAGGTGACAG
* *
78626316 AATCAGAATCAGTATTAGGTAACCGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
* *
78626347 AATTAGAATCAGCATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
78626378 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
78626409 AATCAGAAT
1 AATCAGAAT
78626418 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.21
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:78626322 original size:25 final size:25
Alignment explanation
Indices: 78626271--78626355 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
78626261 TATCAGAACT
* *
78626271 AGAATCAGAATCA-G-AATCAGACTC
1 AGAATCAGAATTAGGTAA-CAGAATC
*
78626295 AGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATTAGGTAACAGAATC
* *
78626320 AGAATCAGTATTAGGTAACCGAATC
1 AGAATCAGAATTAGGTAACAGAATC
* *
78626345 AAAATTAGAAT
1 AGAATCAGAAT
78626356 CAGCATCAGG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
24 12 0.24
25 37 0.74
26 1 0.02
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATTAGGTAACAGAATC
Found at i:78626617 original size:26 final size:27
Alignment explanation
Indices: 78626548--78626620 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
78626538 GCTCAGTTAT
* * *
78626548 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGATA
78626575 CAGATATTGTGGC-AAGCCACCAGA-A
1 CAGATATTGTGGCAAAGCCACCAGATA
*
78626600 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
78626621 TTAACAGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
25 13 0.32
26 16 0.39
27 12 0.29
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGATA
Found at i:78626808 original size:22 final size:22
Alignment explanation
Indices: 78626780--78626843 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
78626770 CAAATACATC
*
78626780 TGGCACACAGCCATAATCAGGT
1 TGGCACAAAGCCATAATCAGGT
* *
78626802 TGGCACAGAGCCAT-ATGTAGGT
1 TGGCACAAAGCCATAAT-CAGGT
**
78626824 TAACACAAAGCCATAATCAG
1 TGGCACAAAGCCATAATCAG
78626844 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAGGT
Found at i:78627327 original size:27 final size:27
Alignment explanation
Indices: 78627271--78627572 Score: 412
Period size: 27 Copynumber: 11.2 Consensus size: 27
78627261 GGGCAAAATA
* * * *
78627271 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
**
78627297 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
78627324 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
78627351 GTAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
78627378 ATAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
78627405 GTAATTTTACCCTACAGGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-G
*
78627432 GTAATTCTACCCTACAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
78627459 GTAATTCTACCCTATAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
78627486 GTAATTCTACCCTACAAGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-G
*
78627513 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
78627540 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
78627567 GTAATT
1 GTAATT
78627573 TTGTAAATCG
Statistics
Matches: 245, Mismatches: 26, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
26 19 0.08
27 221 0.90
28 5 0.02
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:78627642 original size:27 final size:26
Alignment explanation
Indices: 78627611--78627839 Score: 163
Period size: 27 Copynumber: 8.5 Consensus size: 26
78627601 TGTAAATTAG
*
78627611 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAA-TCGA
* *** *
78627638 AGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACA-ATCGA
** *
78627665 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTAC-AATCGA
* *
78627691 GGGATATTTTGGTAATTTTACAAACTA
1 GGG-TATTTTGGTAATTTTACAATCGA
* * *
78627718 GGGGTATTTTGATAATTTTACAAACCA
1 -GGGTATTTTGGTAATTTTACAATCGA
* *
78627745 GGGTATTTTGGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTACAATCGA
* * * *
78627771 TGGGTATTTTGGTGATTTTATAAACCAA
1 -GGGTATTTTGGTAATTTTA-CAATCGA
* * * *
78627799 GGGTATTCTAGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTACAATCGA
78627825 GGGGTATTTTGGTAA
1 -GGGTATTTTGGTAA
78627840 ACTAAAGTAT
Statistics
Matches: 165, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
26 36 0.22
27 121 0.73
28 8 0.05
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAATCGA
Found at i:78627789 original size:80 final size:80
Alignment explanation
Indices: 78627664--78627839 Score: 230
Period size: 80 Copynumber: 2.2 Consensus size: 80
78627654 TTACAGGTCG
** * * * *
78627664 AGGGTATTTCAGTAATTTCACAAATCAGGGATATTTTGGTAATTTTACAAACTAGGGGTATT-TT
1 AGGGTATTTTGGTAATTTCACAAACCAGGGATATTTTGGTAATTTTACAAACCAAGGGTATTCTA
78627728 GATAATTTTACAAACC
66 G-TAATTTTACAAACC
* * *
78627744 AGGGTATTTTGGTAATTTTACAAACCATGGG-TATTTTGGTGATTTTATAAACCAAGGGTATTCT
1 AGGGTATTTTGGTAATTTCACAAACCA-GGGATATTTTGGTAATTTTACAAACCAAGGGTATTCT
78627808 AGTAATTTTACAAACC
65 AGTAATTTTACAAACC
78627824 AGGGGTATTTTGGTAA
1 A-GGGTATTTTGGTAA
78627840 ACTAAAGTAT
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
80 65 0.77
81 19 0.23
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTCACAAACCAGGGATATTTTGGTAATTTTACAAACCAAGGGTATTCTA
GTAATTTTACAAACC
Found at i:78627834 original size:54 final size:53
Alignment explanation
Indices: 78627665--78627839 Score: 215
Period size: 54 Copynumber: 3.3 Consensus size: 53
78627655 TACAGGTCGA
** * * * * *
78627665 GGGTATTTCAGTAATTTCACAAATCAGGGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGG-TATTCTAGTAATTTTACAAACCAG
* * * *
78627719 GGGTATTTTGATAATTTTACAAACCAGGGTATTTTGGTAATTTTACAAACCAT
1 GGGTATTTTGGTAATTTTACAAACCAGGGTATTCTAGTAATTTTACAAACCAG
* *
78627772 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACC-AGGGTATTCTAGTAATTTTACAAACCAG
78627826 GGGTATTTTGGTAA
1 GGGTATTTTGGTAA
78627840 ACTAAAGTAT
Statistics
Matches: 106, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 44 0.42
54 62 0.58
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.38
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGTATTCTAGTAATTTTACAAACCAG
Found at i:78629796 original size:6 final size:6
Alignment explanation
Indices: 78629778--78629933 Score: 88
Period size: 6 Copynumber: 25.3 Consensus size: 6
78629768 AAGAAACATT
* *
78629778 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA CTCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * * *
78629825 GTGACAGA ATCAGA ATCAGT ATTAGGTA ACCA-A ATCAAA ATTAGA ATCAGC
1 AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
* * *
78629876 ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
78629926 ATCAGA AT
1 ATCAGA AT
78629934 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 23, Indels: 28
0.69 0.14 0.17
Matches are distributed among these distances:
5 10 0.09
6 88 0.78
7 10 0.09
8 5 0.04
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:78629799 original size:18 final size:18
Alignment explanation
Indices: 78629778--78629933 Score: 88
Period size: 19 Copynumber: 8.4 Consensus size: 18
78629768 AAGAAACATT
78629778 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
*
78629796 ATCAGAATCAGACTCAGA
1 ATCAGAATCAGAATCAGA
* *
78629814 ATCAGAATTAG-GTGACAGA
1 ATCAGAATCAGAAT--CAGA
* *
78629833 ATCAGAATCAGTATTAGGTA
1 ATCAGAATCAGAATCA-G-A
* * *
78629853 ACCA-AATCAAAATTAGA
1 ATCAGAATCAGAATCAGA
*
78629870 ATCAGCATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
78629889 ATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
*
78629907 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAGA
78629926 ATCAGAAT
1 ATCAGAAT
78629934 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 19, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
17 9 0.08
18 40 0.38
19 48 0.45
20 9 0.08
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:78629838 original size:25 final size:25
Alignment explanation
Indices: 78629804--78629851 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
78629794 GAATCAGAAT
*
78629804 CAGACTCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
*
78629829 CAGAATCAGAATCAGTATTAGGT
1 CAGAATCAGAATCAGAATTAGGT
78629852 AACCAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTGA
Found at i:78629860 original size:25 final size:25
Alignment explanation
Indices: 78629787--78629871 Score: 77
Period size: 25 Copynumber: 3.4 Consensus size: 25
78629777 TATCAGAACT
* *
78629787 AGAATCAGAATCA-G-AATCAGACTC
1 AGAATCAGAATTAGGTAA-CAGAATC
*
78629811 AGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATTAGGTAACAGAATC
*
78629836 AGAATCAGTATTAGGTAACCA-AATC
1 AGAATCAGAATTAGGTAA-CAGAATC
* *
78629861 AAAATTAGAAT
1 AGAATCAGAAT
78629872 CAGCATCAGG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
24 12 0.24
25 35 0.70
26 3 0.06
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATTAGGTAACAGAATC
Found at i:78629874 original size:31 final size:31
Alignment explanation
Indices: 78629832--78629933 Score: 161
Period size: 31 Copynumber: 3.3 Consensus size: 31
78629822 TAGGTGACAG
*
78629832 AATCAGAATCAGTATTAGGTAACCA-AATCAA
1 AATCAGAATCAGTATCAGGTAA-CAGAATCAA
* *
78629863 AATTAGAATCAGCATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
78629894 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
78629925 AATCAGAAT
1 AATCAGAAT
78629934 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
30 2 0.03
31 63 0.97
ACGTcount: A:0.49, C:0.16, G:0.15, T:0.21
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:78630128 original size:26 final size:27
Alignment explanation
Indices: 78630065--78630138 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
78630055 GCTCAGTTAT
* *
78630065 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
78630092 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
78630118 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
78630139 TTAACAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:78630326 original size:22 final size:22
Alignment explanation
Indices: 78630298--78630361 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
78630288 CAAATACATG
*
78630298 TGGCACACAGCCATAATCAGGT
1 TGGCACAAAGCCATAATCAGGT
* *
78630320 TGGCACAGAGCCAT-ATGTAGGT
1 TGGCACAAAGCCATAAT-CAGGT
**
78630342 TAACACAAAGCCATAATCAG
1 TGGCACAAAGCCATAATCAG
78630362 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAGGT
Found at i:78630845 original size:27 final size:27
Alignment explanation
Indices: 78630789--78631090 Score: 423
Period size: 27 Copynumber: 11.2 Consensus size: 27
78630779 GGGCAAAATA
* * * *
78630789 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
**
78630815 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
78630842 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
78630869 GTAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
78630896 ATAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
78630923 GTAATTTTACCCTACAGGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-G
78630950 GTAATTCTACCCTACAGGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-G
* *
78630977 GTAATTCTACCCTATAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTTCG
78631004 GTAATTCTACCCTACAGGGGTA-TTCTG
1 GTAATTCTACCCTACAGGGGTATTTC-G
*
78631031 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
78631058 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
78631085 GTAATT
1 GTAATT
78631091 TTGTAAATCG
Statistics
Matches: 247, Mismatches: 24, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
26 19 0.08
27 223 0.90
28 5 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:78631106 original size:27 final size:27
Alignment explanation
Indices: 78631076--78631173 Score: 65
Period size: 27 Copynumber: 3.6 Consensus size: 27
78631066 ACCCTACAGG
*
78631076 GGTATTTCGGTAATTTTGTAAATCGAT
1 GGTATTTCGGTAATTTTGTAAATCGAA
*** * * *
78631103 GGTAAAACGGTAATTCTGTAAAT-TAGG
1 GGTATTTCGGTAATTTTGTAAATCGA-A
** *
78631130 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTGTAAATCGAA
*
78631157 GGTATTTCGATAATTTT
1 GGTATTTCGGTAATTTT
78631174 ACAGGTCGAG
Statistics
Matches: 51, Mismatches: 16, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
26 4 0.08
27 46 0.90
28 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTGTAAATCGAA
Found at i:78631174 original size:27 final size:27
Alignment explanation
Indices: 78631140--78631204 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
78631130 GGTACTTTGG
78631140 TAATTTTACAAGTCGAAGGTATTTCGA
1 TAATTTTACAAGTCGAAGGTATTTCGA
* * *
78631167 TAATTTTACAGGTCGAGGGTATTTTGA
1 TAATTTTACAAGTCGAAGGTATTTCGA
*
78631194 TAATTTCACAA
1 TAATTTTACAA
78631205 ATTAGGGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCGAAGGTATTTCGA
Found at i:78631216 original size:27 final size:27
Alignment explanation
Indices: 78631183--78631358 Score: 226
Period size: 27 Copynumber: 6.5 Consensus size: 27
78631173 TACAGGTCGA
* * *
78631183 GGGTATTTTGATAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
78631210 GGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
78631237 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
78631264 GGGTATTTTGGTAATTTTACAAACCAT
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
78631291 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
78631318 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
78631345 GGGTATTTTGGTAA
1 GGGTATTTTGGTAA
78631359 ACTAAAGTAT
Statistics
Matches: 132, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:78631242 original size:81 final size:80
Alignment explanation
Indices: 78631122--78631354 Score: 229
Period size: 81 Copynumber: 2.9 Consensus size: 80
78631112 GTAATTCTGT
* * * * ***
78631122 AAATTAGGGGTACTTTGGTAATTTTAC-AAGTCGAAGGTATTTCGATAATTTTACAGGTC-GAGG
1 AAATTA-GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGATAATTTTACAAACCAG-GG
78631185 GTATTTTGATAATTTCAC
63 GTATTTTGATAATTTCAC
* *
78631203 AAATTAGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGT
1 AAATTAGGG-TATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAACCAGGGGT
* *
78631268 ATTTTGGTAATTTTAC
65 ATTTTGATAATTTCAC
** * * * * *
78631284 AAACCATGGGTATTTTGGTGATTTTATAAACCAAGGGTA-TTCTAGTAATTTTACAAACCAGGGG
1 AAATTA-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGA-TAATTTTACAAACCAGGGG
78631348 TATTTTG
64 TATTTTG
78631355 GTAAACTAAA
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
80 5 0.04
81 114 0.90
82 8 0.06
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
AAATTAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTTACAAACCAGGGGTA
TTTTGATAATTTCAC
Found at i:78631355 original size:54 final size:54
Alignment explanation
Indices: 78631127--78631358 Score: 220
Period size: 54 Copynumber: 4.3 Consensus size: 54
78631117 TCTGTAAATT
* * * * ***
78631127 AGGGGTACTTTGGTAATTTTACAAGTCGAA-GGTATT-TCGATAATTTTACAGGTC
1 AGGGGTATTTTGGTAATTTTACAA-ACCAAGGGTATTCTAG-TAATTTTACAAACC
* * ** * * *
78631181 -GAGGGTATTTTGATAATTTCACAAA-TTAGGGATATTTTGGTAATTTTACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACCAAGGG-TATTCTAGTAATTTTACAAACC
* * *
78631235 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACC
* * *
78631289 ATGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACC
78631343 AGGGGTATTTTGGTAA
1 AGGGGTATTTTGGTAA
78631359 ACTAAAGTAT
Statistics
Matches: 147, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
52 1 0.01
53 3 0.02
54 137 0.93
55 6 0.04
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACC
Found at i:78634981 original size:38 final size:38
Alignment explanation
Indices: 78634775--78634973 Score: 218
Period size: 38 Copynumber: 5.2 Consensus size: 38
78634765 GAATCCAGTC
* * * *
78634775 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* * * * *
78634815 ACTAGCACTAAGCCTGCGGGATTTAACTCAGATATAGT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
78634853 TCTAGCACGAAGCCTACAGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
78634891 ACCAACACGAAGCCTGCAGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
78634929 ACCAACACAAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
78634967 TCCAGCA
1 ACCAGCA
78634974 TATAGCCTAC
Statistics
Matches: 138, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
38 115 0.83
39 5 0.04
40 18 0.13
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:78636366 original size:2 final size:2
Alignment explanation
Indices: 78636359--78636394 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
78636349 TAATTATACT
78636359 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
78636395 CTATCAAAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:78640961 original size:45 final size:45
Alignment explanation
Indices: 78640897--78641100 Score: 281
Period size: 45 Copynumber: 4.6 Consensus size: 45
78640887 TATTGTACGG
* *
78640897 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
78640942 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
78640987 TACTATTTGGGCCTTTGAGCCTAACAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
78641032 TACTATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
78641076 -A-TGATGTCGGG-CTTTGAGCCTAGCA
1 TACT-AT-TCGGGCCTTTGAGCCTAGCA
78641101 AGCGAAATGT
Statistics
Matches: 145, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
42 1 0.01
43 16 0.11
44 5 0.03
45 123 0.85
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Done.