Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 254 of 438
Found at i:78646567 original size:39 final size:39
Alignment explanation
Indices: 78646436--78646626 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
78646426 GGATATAACG
* ** **
78646436 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
78646476 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
78646516 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
78646554 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
78646594 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
78646627 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:78646571 original size:78 final size:80
Alignment explanation
Indices: 78646476--78646626 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
78646466 GGTTATAGCG
* * * *
78646476 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
78646538 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
78646554 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
78646619 AGCCCGGA
66 AGCCCGGA
78646627 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:78654604 original size:39 final size:39
Alignment explanation
Indices: 78654473--78654663 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
78654463 GGATATAACG
* ** **
78654473 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
78654513 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
78654553 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
78654591 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
78654631 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
78654664 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:78654608 original size:78 final size:80
Alignment explanation
Indices: 78654513--78654663 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
78654503 GGTTATAGCG
* * * *
78654513 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
78654575 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
78654591 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
78654656 AGCCCGGA
66 AGCCCGGA
78654664 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:78656902 original size:17 final size:19
Alignment explanation
Indices: 78656880--78656915 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
78656870 TATAGCAGCC
78656880 CACA-TTTTCT-TTCATTT
1 CACATTTTTCTATTCATTT
78656897 CACATTTTTCTATTCATTT
1 CACATTTTTCTATTCATTT
78656916 TCACCACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 6 0.35
19 7 0.41
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.58
Consensus pattern (19 bp):
CACATTTTTCTATTCATTT
Found at i:78658621 original size:49 final size:49
Alignment explanation
Indices: 78658536--78658659 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
78658526 TGTGTGTCAG
* *
78658536 TGTAAGACCTATCTGGGACATGGCATCGACACCGATAGATGAGAGCCAC
1 TGTAAGACCTATCTAGGACATGGCATCGACACCGATAGATGAAAGCCAC
* * * * * *
78658585 TGTAAGACCTGTCTAGGACATGGTATCGGC-CTCGATATATGAAAGTCAG
1 TGTAAGACCTATCTAGGACATGGCATCGACAC-CGATAGATGAAAGCCAC
* *
78658634 TGTAAGACCTATCTAGAACACGGCAT
1 TGTAAGACCTATCTAGGACATGGCAT
78658660 TGACTTTAAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
48 1 0.02
49 61 0.98
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTATCTAGGACATGGCATCGACACCGATAGATGAAAGCCAC
Found at i:78662958 original size:32 final size:33
Alignment explanation
Indices: 78662921--78662990 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 33
78662911 ATTGTAGGGA
*
78662921 TATTTTAGTATAATTAGAGCTCTAATCTAAGCC
1 TATTTTAGTATAATTAGAACTCTAATCTAAGCC
78662954 -ATTTTAGTATAATTAGAACTCTAATCTAAGCC
1 TATTTTAGTATAATTAGAACTCTAATCTAAGCC
78662986 TATTT
1 TATTT
78662991 AAAAGGGTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 31 0.89
33 4 0.11
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (33 bp):
TATTTTAGTATAATTAGAACTCTAATCTAAGCC
Found at i:78671233 original size:125 final size:123
Alignment explanation
Indices: 78670999--78671370 Score: 483
Period size: 125 Copynumber: 3.0 Consensus size: 123
78670989 GGAACTACTA
* * *
78670999 TAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTACTTTTACTGATAGTGCATCCTTCTTGAA
1 TAGAAAAA-AGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAA
* *
78671064 GCATTCTTTTACACTATTTTTTATAACATTCTTCTTAAAATTATTTTTTCAGAAACCACTG
65 GCATT-TTTTACACTA-TTTTTATAAAATTCTTCTCAAAATTATTTTTTCAGAAACCACTG
* * * * *
78671125 TAGAAAAAAGGGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTAATAATGCATCCTGCTTGAAA
1 TAGAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAAG
* * * *
78671190 CATTTTTTACACTATTTTTATAATATTGTCTTCTCAAAATTATTTTCTCAAAAACTACTG
66 CATTTTTTACACTATTTTTATAA-AAT-TCTTCTCAAAATTATTTTTTCAGAAACCACTG
* * *
78671250 TAGAAAAAAGCGTCCACGTGGAAGCTTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTGAC
1 TAGAAAAAAGCGTCCACGTGGGAGC-TTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAA
* * *
78671315 GCATTTTTGACACTATTTTTTTCAAAACTATCTTCTCAAAATTATTTTTCCAGAAA
65 GCATTTTTTACACTATTTTTAT-AAAA-T-TCTTCTCAAAATTATTTTTTCAGAAA
78671371 TTACTAGACA
Statistics
Matches: 212, Mismatches: 29, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
123 9 0.04
124 11 0.05
125 104 0.49
126 62 0.29
127 26 0.12
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (123 bp):
TAGAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAAG
CATTTTTTACACTATTTTTATAAAATTCTTCTCAAAATTATTTTTTCAGAAACCACTG
Found at i:78671509 original size:33 final size:34
Alignment explanation
Indices: 78671467--78671535 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
78671457 CACAAAATTA
* *
78671467 TTTTT-AAAAACTCTAAACCCTAATTTAATTTAT
1 TTTTTAAAAAACCCTAAACACTAATTTAATTTAT
* *
78671500 TTTTTAAAAAACCCTAAACATTAATTTATTTTAT
1 TTTTTAAAAAACCCTAAACACTAATTTAATTTAT
78671534 TT
1 TT
78671536 AAAAAACACT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 5 0.16
34 26 0.84
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (34 bp):
TTTTTAAAAAACCCTAAACACTAATTTAATTTAT
Found at i:78671517 original size:34 final size:31
Alignment explanation
Indices: 78671467--78671570 Score: 104
Period size: 31 Copynumber: 3.3 Consensus size: 31
78671457 CACAAAATTA
*
78671467 TTTTT-AAAAACTCTAAACCCTAATTTAATTTAT
1 TTTTTAAAAAACACTAAACCCTAATTT-A-TT-T
* **
78671500 TTTTTAAAAAACCCTAAACATTAATTTATTT
1 TTTTTAAAAAACACTAAACCCTAATTTATTT
* * *
78671531 TATTTAAAAAACACTAAACCTTGATTTA-TT
1 TTTTTAAAAAACACTAAACCCTAATTTATTT
78671561 TTTTTAAAAA
1 TTTTTAAAAA
78671571 TCCCAAACCC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
30 11 0.18
31 25 0.40
32 2 0.03
33 6 0.10
34 18 0.29
ACGTcount: A:0.42, C:0.12, G:0.01, T:0.44
Consensus pattern (31 bp):
TTTTTAAAAAACACTAAACCCTAATTTATTT
Found at i:78671567 original size:30 final size:30
Alignment explanation
Indices: 78671491--78671570 Score: 117
Period size: 31 Copynumber: 2.7 Consensus size: 30
78671481 AAACCCTAAT
*
78671491 TTAATTTA-TTTTTTAAAAAACCCTAAACA
1 TTAATTTATTTTTTTAAAAAACACTAAACA
*
78671520 TTAATTTATTTTATTTAAAAAACACTAAACC
1 TTAATTTATTTT-TTTAAAAAACACTAAACA
*
78671551 TTGATTTATTTTTTTAAAAA
1 TTAATTTATTTTTTTAAAAA
78671571 TCCCAAACCC
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 8 0.17
30 11 0.24
31 27 0.59
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.46
Consensus pattern (30 bp):
TTAATTTATTTTTTTAAAAAACACTAAACA
Found at i:78682192 original size:29 final size:29
Alignment explanation
Indices: 78682159--78682289 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
78682149 TGACGAGATC
*
78682159 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
78682188 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
78682217 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
78682246 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
78682275 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
78682290 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:78690250 original size:29 final size:29
Alignment explanation
Indices: 78690217--78690347 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
78690207 TGACGAGATC
*
78690217 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
78690246 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
78690275 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
78690304 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
78690333 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
78690348 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:78703628 original size:39 final size:39
Alignment explanation
Indices: 78703585--78703697 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
78703575 GTGCGAATTG
78703585 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
78703624 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* **
78703663 TGATATCCGGGTTAAGTCCCGAAGGCGTTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
78703698 GGTTACCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 52 0.76
40 16 0.24
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:78703713 original size:79 final size:79
Alignment explanation
Indices: 78703574--78703727 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
78703564 TGTGAATGAA
** *
78703574 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
78703639 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * ** * *
78703652 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
78703717 TGTCCCGAAGG
65 AGTCCCGAAGG
78703728 TGTTTTGAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 25 0.39
79 31 0.48
80 8 0.12
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:78711657 original size:40 final size:39
Alignment explanation
Indices: 78711518--78711671 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
78711508 TGTGAATGAA
* *
78711518 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
78711557 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
78711596 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
78711636 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
78711672 TGTTTTGAAC
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:78711657 original size:79 final size:79
Alignment explanation
Indices: 78711518--78711671 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
78711508 TGTGAATGAA
** *
78711518 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
78711583 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
78711596 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
78711661 TGTCCCGAAGG
65 AGTCCCGAAGG
78711672 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:78715202 original size:50 final size:50
Alignment explanation
Indices: 78715087--78715263 Score: 203
Period size: 50 Copynumber: 3.5 Consensus size: 50
78715077 TGAGAACACA
* * * * *
78715087 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGCCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACG
78715139 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
** * * * * ** *
78715189 TGTGTAGTACTAAGTATAGGCTACTACATGTACCGGATTGTT-GGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
78715238 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
78715264 TGCGTACCAG
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
49 28 0.26
50 45 0.41
52 36 0.33
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
Found at i:78718753 original size:2 final size:2
Alignment explanation
Indices: 78718746--78718773 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
78718736 TGATTCTGTT
78718746 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
78718774 AGGGAAGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:78721931 original size:50 final size:50
Alignment explanation
Indices: 78721847--78722087 Score: 220
Period size: 50 Copynumber: 4.8 Consensus size: 50
78721837 GTGAGAACAT
**
78721847 ATGTGTAGTACTATA-TGCAGGCTACTACT-TGTACCAGATAGTTAGGTTTC
1 ATGTGTAGTACTA-AGTGCAGGCTACTA-TGTGTACCAGATAGTTAGGTCAC
* * * * * *
78721897 ATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGACAACTTCA-ATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTT-AGGTCAC
* * * * * * *
78721948 GTGTATAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGCTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCAC
* * ** * *
78721998 GTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGTT-GGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCAC
*
78722047 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
78722088 CTTCGATTAC
Statistics
Matches: 152, Mismatches: 34, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
49 42 0.28
50 74 0.49
51 35 0.23
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCAC
Found at i:78724619 original size:40 final size:39
Alignment explanation
Indices: 78724575--78724700 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
78724565 GGGACTCAAC
*
78724575 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
78724615 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
78724655 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
78724695 CCGGAT
1 CCGGAT
78724701 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:78724659 original size:80 final size:80
Alignment explanation
Indices: 78724514--78724700 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
78724504 GCTACACATT
* * *
78724514 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
78724578 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
78724594 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
78724657 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
78724675 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
78724701 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:78732689 original size:40 final size:39
Alignment explanation
Indices: 78732645--78732770 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
78732635 GGGACTCAAC
*
78732645 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
78732685 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
78732725 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
78732765 CCGGAT
1 CCGGAT
78732771 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:78732729 original size:80 final size:80
Alignment explanation
Indices: 78732584--78732770 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
78732574 GCTACACATT
* * *
78732584 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
78732648 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
78732664 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
78732727 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
78732745 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
78732771 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:78741475 original size:40 final size:38
Alignment explanation
Indices: 78741397--78741575 Score: 209
Period size: 40 Copynumber: 4.6 Consensus size: 38
78741387 ACCCAAGTAT
* *
78741397 CTTCGGGATTTAG-CCGGATATAG-CAACTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACT-A-GCAAATGC
*
78741436 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCA--AATGC
*
78741476 CTTCGGGACTTAGCCAGGATATAGTCACTAGCAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAATGC
** * *
78741514 CTTCGGGACTTAGCCTAGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAG--CAAATGC
78741554 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
78741576 CATCCGAATA
Statistics
Matches: 123, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
38 34 0.28
39 12 0.10
40 76 0.62
41 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (38 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAATGC
Found at i:78741527 original size:78 final size:79
Alignment explanation
Indices: 78741397--78741575 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 79
78741387 ACCCAAGTAT
* * * *
78741397 CTTCGGGATTTAGCCGGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCAGATATAGTA
**
78741462 ACTAGCATGAATGC
66 ACTAGCACAAATGC
* *
78741476 CTTCGGGACTTAGCCAGGATATAGTC-ACT-A-GCAAATGCCTTCGGGACTTAGCCTAGATATAG
1 CTTCGGGACTTAGCC-GGATATAG-CAACTCACACAAATGCCTTCGGGACTTAGCCCAGATATAG
*
78741538 TAACTTGCACAAATGC
64 TAACTAGCACAAATGC
78741554 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATAT
78741576 CATCCGAATA
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
78 59 0.67
79 17 0.19
80 11 0.12
81 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCAGATATAGTA
ACTAGCACAAATGC
Found at i:78751818 original size:29 final size:29
Alignment explanation
Indices: 78751784--78751915 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
78751774 TACTCGATTT
** * *
78751784 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
78751813 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
78751842 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
78751871 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78751900 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
78751916 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:78759548 original size:29 final size:29
Alignment explanation
Indices: 78759514--78759645 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
78759504 TACTCGATTT
** * *
78759514 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
78759543 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
78759572 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
78759601 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78759630 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
78759646 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:78767954 original size:23 final size:23
Alignment explanation
Indices: 78767897--78767966 Score: 88
Period size: 23 Copynumber: 2.9 Consensus size: 23
78767887 AGCCATGATT
78767897 GGTAAGCTCCT-TCTGAGCTAATGAAC
1 GGTAAGCT-CTATC-GAGCTAA--AAC
*
78767923 TGTAAGCTCTATCGAGCTAAAAC
1 GGTAAGCTCTATCGAGCTAAAAC
78767946 GGTAAGCTCTATCGAGCTAAA
1 GGTAAGCTCTATCGAGCTAAA
78767967 CCTCAAGAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
23 23 0.56
25 9 0.22
26 9 0.22
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (23 bp):
GGTAAGCTCTATCGAGCTAAAAC
Found at i:78768696 original size:30 final size:29
Alignment explanation
Indices: 78768652--78768740 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 29
78768642 CAAAGATAAC
78768652 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAAACCGAATAAAGAAATCCAAGATA
* *
78768681 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAAACC-GAATAAAGAAATCCAAG-ATA
* * *
78768711 AAGAGATCCAGAATAAAGAAACCCAAGATA
1 AAGAAAACC-GAATAAAGAAATCCAAGATA
78768741 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAAACCGAATAAAGAAATCCAAGATA
Found at i:78768700 original size:15 final size:14
Alignment explanation
Indices: 78768652--78768731 Score: 79
Period size: 15 Copynumber: 5.4 Consensus size: 14
78768642 CAAAGATAAC
*
78768652 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
78768666 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
* *
78768681 GAGAAACCCGGAATA
1 AAGAAATCC-GAATA
78768696 AAGAAATCCAGAATA
1 AAGAAATCC-GAATA
*
78768711 AAGAGATCCAGAATA
1 AAGAAATCC-GAATA
78768726 AAGAAA
1 AAGAAA
78768732 CCCAAGATAC
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:78771804 original size:93 final size:93
Alignment explanation
Indices: 78771692--78771863 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78771682 CGCCCATAAG
* *
78771692 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78771757 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
78771785 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78771850 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
78771864 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:78771860 original size:46 final size:46
Alignment explanation
Indices: 78771685--78771860 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
78771675 TGTAACCCGC
* * *
78771685 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
78771731 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
78771781 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78771824 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
78771861 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78773453 original size:40 final size:40
Alignment explanation
Indices: 78773398--78773614 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
78773388 GGATGATAAT
* *
78773398 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
*
78773438 CGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
78773478 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
78773518 CGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACTATAAT-
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATC
* *
78773558 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
*
78773598 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
78773615 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 19 0.12
40 141 0.87
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:78775137 original size:12 final size:12
Alignment explanation
Indices: 78775120--78775149 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
78775110 TAACTTAGGT
78775120 CACACGGCCAAC
1 CACACGGCCAAC
78775132 CACACGGCCAAC
1 CACACGGCCAAC
78775144 CACACG
1 CACACG
78775150 CCTATGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.50, G:0.17, T:0.00
Consensus pattern (12 bp):
CACACGGCCAAC
Found at i:78776201 original size:22 final size:23
Alignment explanation
Indices: 78776149--78776202 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
78776139 GCTAATGAAC
* *
78776149 AGTAAGCTCTATTGAGCTGAAAT
1 AGTAAGCTCTATCGAGCTCAAAT
* *
78776172 GGTAAGCTCTATCGAGC-CCAAT
1 AGTAAGCTCTATCGAGCTCAAAT
78776194 AGTAAGCTC
1 AGTAAGCTC
78776203 ATACAAGCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (23 bp):
AGTAAGCTCTATCGAGCTCAAAT
Found at i:78780898 original size:19 final size:19
Alignment explanation
Indices: 78780846--78780898 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
78780836 TGGCCATCGA
*
78780846 ATGTTGGCCTA-TAATGGTT
1 ATGTTGG-CTATTGATGGTT
*
78780865 ATGATGGC-ATATGATGGTT
1 ATGTTGGCTAT-TGATGGTT
78780884 ATGTTGGCTATTGAT
1 ATGTTGGCTATTGAT
78780899 ACATTCATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 1 0.04
18 1 0.04
19 24 0.86
20 2 0.07
ACGTcount: A:0.23, C:0.08, G:0.28, T:0.42
Consensus pattern (19 bp):
ATGTTGGCTATTGATGGTT
Found at i:78781159 original size:13 final size:13
Alignment explanation
Indices: 78781141--78781168 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
78781131 ATAGACACAT
78781141 GGGCGTGTGTCTA
1 GGGCGTGTGTCTA
78781154 GGGCGTGTGTCTA
1 GGGCGTGTGTCTA
78781167 GG
1 GG
78781169 CTATGTGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.50, T:0.29
Consensus pattern (13 bp):
GGGCGTGTGTCTA
Found at i:78787688 original size:39 final size:40
Alignment explanation
Indices: 78787602--78787705 Score: 174
Period size: 39 Copynumber: 2.6 Consensus size: 40
78787592 AGCTCGGTTA
*
78787602 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
* *
78787642 TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
78787681 TAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
78787706 ATCTCAGTCC
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.58
40 25 0.42
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
Found at i:78787742 original size:79 final size:80
Alignment explanation
Indices: 78787602--78787758 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
78787592 AGCTCGGTTA
* * * *
78787602 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGGATATAGTAACTAGCACCAAAGCCTTCGG
78787667 G-CTTAGCCCGGAAT
66 GACTTAGCCCGGAAT
** * *
78787681 TAGTAACTCGCACAAATGCCTTC-GGATCTCAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTCAACCCGGATATAGTAAC-TAGCACCAAAGCCTTC
*
78787744 GGGATTTAGCCCGGA
64 GGGACTTAGCCCGGA
78787759 CATCATTCGA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 49 0.74
80 14 0.21
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGGATATAGTAACTAGCACCAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:78787758 original size:40 final size:40
Alignment explanation
Indices: 78787555--78787758 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
78787545 CAGAATTTAA
** * *
78787555 CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
78787595 TCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78787635 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78787674 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTCAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
78787714 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGATTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78787754 CCGGA
1 CCGGA
78787759 CATCATTCGA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 88 0.65
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78791134 original size:41 final size:42
Alignment explanation
Indices: 78791089--78791180 Score: 143
Period size: 41 Copynumber: 2.2 Consensus size: 42
78791079 CCGAAACTAT
*
78791089 GTGTAAGACAATATCTAGGATATGGCATC-ATTATGAGA-CTC
1 GTGTAAGACAATATCTAGGATATGGCATCGA-TATGAGATATC
*
78791130 GTGTAAGACCATATCTAGGATATGGCATCGATATGAGATATC
1 GTGTAAGACAATATCTAGGATATGGCATCGATATGAGATATC
78791172 GTGTAAGAC
1 GTGTAAGAC
78791181 CATTGCTAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
41 35 0.74
42 12 0.26
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (42 bp):
GTGTAAGACAATATCTAGGATATGGCATCGATATGAGATATC
Found at i:78791826 original size:19 final size:19
Alignment explanation
Indices: 78791774--78791819 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
78791764 TAGCCATCGA
*
78791774 ATGTTGGCCTATAATGGTT
1 ATGTTGGCCTATGATGGTT
*
78791793 ATGATGGCCTATGATGGTT
1 ATGTTGGCCTATGATGGTT
78791812 ATGTTGGC
1 ATGTTGGC
78791820 TATTGATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.11, G:0.30, T:0.39
Consensus pattern (19 bp):
ATGTTGGCCTATGATGGTT
Found at i:78797430 original size:40 final size:40
Alignment explanation
Indices: 78797385--78797552 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
78797375 CGGAATATAA
78797385 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
78797425 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
78797465 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
78797505 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
78797545 CCGGATAT
1 CCGGATAT
78797553 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78797535 original size:80 final size:80
Alignment explanation
Indices: 78797401--78797550 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
78797391 ATAACCACGT
* *
78797401 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
78797466 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
78797481 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
78797544 CCCGGAT
64 CCCGGAT
78797551 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:78804786 original size:40 final size:40
Alignment explanation
Indices: 78804741--78804908 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
78804731 CGGAATATAA
78804741 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
78804781 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
78804821 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
78804861 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
78804901 CCGGATAT
1 CCGGATAT
78804909 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78804891 original size:80 final size:80
Alignment explanation
Indices: 78804757--78804906 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
78804747 ATAACCACGT
* *
78804757 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
78804822 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
78804837 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
78804900 CCCGGAT
64 CCCGGAT
78804907 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:78806788 original size:12 final size:12
Alignment explanation
Indices: 78806771--78806808 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
78806761 CACAGCGGCT
*
78806771 TCAACTTCACCC
1 TCAACTTCATCC
78806783 TCAACTTCATCC
1 TCAACTTCATCC
*
78806795 TCATCTTCATCC
1 TCAACTTCATCC
78806807 TC
1 TC
78806809 TAGGTCTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.21, C:0.45, G:0.00, T:0.34
Consensus pattern (12 bp):
TCAACTTCATCC
Found at i:78824008 original size:46 final size:46
Alignment explanation
Indices: 78823955--78824120 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
78823945 TTGAGCATCC
*
78823955 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCA
* * *
78824001 GAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G--TCA
* * *
78824048 GAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCA
*
78824093 GAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 GAACTCGTTGAGTTGAGTCCGAGTTCAC
78824121 TTAGGGGCGG
Statistics
Matches: 98, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 19 0.19
46 40 0.41
47 21 0.21
49 4 0.04
50 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCA
Found at i:78824107 original size:92 final size:93
Alignment explanation
Indices: 78823949--78824118 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
78823939 GGATGGTTGA
* * *
78823949 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCAGAACTCGTTGAGT
78824014 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
78824042 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCAGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCAGAACTCGTTGAGT
78824106 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78824119 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 48 0.67
93 24 0.33
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCAGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78834659 original size:40 final size:39
Alignment explanation
Indices: 78834614--78834741 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
78834604 CGGAATATAA
*
78834614 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78834654 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAAC
1 CCGGATATAATAACT-GCACAAATGCCTTCGGGTCTTAGC
** * * * * *
78834694 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA-TAACTGCACAAATGCCTTCGGGTCTTAGC
78834734 CCGGATAT
1 CCGGATAT
78834742 CATTCAATTT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 69 0.96
41 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATAACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:78846421 original size:40 final size:40
Alignment explanation
Indices: 78846376--78846543 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
78846366 CGGAATATAA
78846376 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
78846416 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
78846456 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
78846496 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
78846536 CCGGATAT
1 CCGGATAT
78846544 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78848399 original size:30 final size:30
Alignment explanation
Indices: 78848329--78848399 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 30
78848319 GCATGTGTCT
* *
78848329 CAGCTGTGTGCGACACACGGTCACGTTACA
1 CAGCCGTGTGTGACACACGGTCACGTTACA
*
78848359 CAGCCCTGTGTGACACACGGTCACGTTACA
1 CAGCCGTGTGTGACACACGGTCACGTTACA
**
78848389 TGGCCGTGTGT
1 CAGCCGTGTGT
78848400 TCCTTGGGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.23
Consensus pattern (30 bp):
CAGCCGTGTGTGACACACGGTCACGTTACA
Found at i:78853568 original size:27 final size:26
Alignment explanation
Indices: 78853512--78853568 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
78853502 CAACCATAAC
* * *
78853512 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
78853538 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
78853565 CCTA
1 CCTA
78853569 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:78855961 original size:24 final size:24
Alignment explanation
Indices: 78855932--78855980 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
78855922 CTTACAGTAC
*
78855932 TCAGTATTTTTTCATTCAGTACGG
1 TCAGTATTTTTCCATTCAGTACGG
78855956 TCAGTATTTTTCCATTCAGTACGG
1 TCAGTATTTTTCCATTCAGTACGG
78855980 T
1 T
78855981 GGAGGTGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (24 bp):
TCAGTATTTTTCCATTCAGTACGG
Found at i:78858410 original size:6 final size:6
Alignment explanation
Indices: 78858399--78858475 Score: 52
Period size: 6 Copynumber: 12.7 Consensus size: 6
78858389 AATCCTCCTA
* * *
78858399 TTTTAT TTTTA- -TTTAT TCTTAT TTTTAT TCTTAT TTTATTT ATTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT -TTTTAT
* *
78858447 TCTTA- TTTTACT TTTGATT TTTTAT TTTT
1 TTTTAT TTTTA-T TTTTA-T TTTTAT TTTT
78858476 CAATTTTCTT
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 30 0.56
7 13 0.24
8 3 0.06
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:78858427 original size:12 final size:11
Alignment explanation
Indices: 78858397--78858456 Score: 81
Period size: 11 Copynumber: 5.6 Consensus size: 11
78858387 TGAATCCTCC
*
78858397 TATTTTATTTT
1 TATTTTATTCT
78858408 TA-TTTATTCT
1 TATTTTATTCT
78858418 TATTTTTATTCT
1 TA-TTTTATTCT
78858430 TATTTTA-T-T
1 TATTTTATTCT
78858439 TATTTTATTCT
1 TATTTTATTCT
78858450 TATTTTA
1 TATTTTA
78858457 CTTTTGATTT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
9 8 0.18
10 11 0.25
11 15 0.34
12 10 0.23
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (11 bp):
TATTTTATTCT
Found at i:78858446 original size:20 final size:22
Alignment explanation
Indices: 78858397--78858456 Score: 81
Period size: 20 Copynumber: 2.8 Consensus size: 22
78858387 TGAATCCTCC
*
78858397 TATTTTATTTTTA-TTTATTCT
1 TATTTTATTCTTATTTTATTCT
78858418 TATTTTTATTCTTATTTTA-T-T
1 TA-TTTTATTCTTATTTTATTCT
78858439 TATTTTATTCTTATTTTA
1 TATTTTATTCTTATTTTA
78858457 CTTTTGATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
20 16 0.44
21 5 0.14
22 11 0.31
23 4 0.11
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (22 bp):
TATTTTATTCTTATTTTATTCT
Found at i:78861400 original size:13 final size:13
Alignment explanation
Indices: 78861384--78861416 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
78861374 TTTGATTAAA
*
78861384 TTAGTTAATTAGT
1 TTAGATAATTAGT
78861397 TTAGATAATTAGT
1 TTAGATAATTAGT
78861410 TTA-ATAA
1 TTAGATAA
78861417 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:78866800 original size:27 final size:27
Alignment explanation
Indices: 78866738--78866806 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
78866728 TTTAAAACCC
*
78866738 TAGGGGT-ATATCGGTAATTATGCTCTT
1 TAGGGGTAATTTC-GTAATTATGCTCTT
*
78866765 TAGGGGTAATTTCGTAATTTTGCTCTT
1 TAGGGGTAATTTCGTAATTATGCTCTT
78866792 TAGGGGTAATTTCGT
1 TAGGGGTAATTTCGT
78866807 GATCTACGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 35 0.90
28 4 0.10
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (27 bp):
TAGGGGTAATTTCGTAATTATGCTCTT
Found at i:78871060 original size:28 final size:28
Alignment explanation
Indices: 78871009--78871077 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
78870999 TTTAAAACCC
* *
78871009 TAGGGGT-ATATCAGTAATTATGCTCTT
1 TAGGGGTAATTTCGGTAATTATGCTCTT
*
78871036 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTATGCTCTT
78871064 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
78871078 TGATCTACGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.22, C:0.10, G:0.26, T:0.42
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTATGCTCTT
Found at i:78874447 original size:21 final size:21
Alignment explanation
Indices: 78874421--78874475 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
78874411 ATACAGAGTC
78874421 ACACGCCCGTGTGAAATAG-GG
1 ACACGCCCGTGTGAAAT-GTGG
*
78874442 ACACGCTCGTGTGAAATGTGG
1 ACACGCCCGTGTGAAATGTGG
78874463 ACACGCCCGTGTG
1 ACACGCCCGTGTG
78874476 CTCTTGACAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.97
ACGTcount: A:0.24, C:0.25, G:0.33, T:0.18
Consensus pattern (21 bp):
ACACGCCCGTGTGAAATGTGG
Found at i:78883660 original size:35 final size:35
Alignment explanation
Indices: 78883614--78883698 Score: 102
Period size: 35 Copynumber: 2.4 Consensus size: 35
78883604 ATACACTCTA
* *
78883614 TTTGGTGTGTTTC-GATTGGACTAGCTCTTATGAGC
1 TTTGGTATGTTTCAG-TTGGACTAACTCTTATGAGC
*
78883649 TTTGGTATGTTTCAGTTGGACTAACTCTTATGACC
1 TTTGGTATGTTTCAGTTGGACTAACTCTTATGAGC
*
78883684 ATT-GTAGTGTTTCAG
1 TTTGGTA-TGTTTCAG
78883699 AGGGATTAGC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
34 3 0.07
35 40 0.91
36 1 0.02
ACGTcount: A:0.18, C:0.14, G:0.25, T:0.44
Consensus pattern (35 bp):
TTTGGTATGTTTCAGTTGGACTAACTCTTATGAGC
Found at i:78886282 original size:27 final size:27
Alignment explanation
Indices: 78886260--78886536 Score: 322
Period size: 27 Copynumber: 10.3 Consensus size: 27
78886250 TTAGTTTACC
* *
78886260 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
78886287 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
78886314 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
78886341 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
78886368 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
78886395 AAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
78886422 AAATTACCAAAATACCC-TGATTTGTT
1 AAATTACCAAAATACCCTTGGTTTGTA
* * ***
78886448 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * **
78886475 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
78886502 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
78886529 GAATTACC
1 AAATTACC
78886537 GTTTACCCTC
Statistics
Matches: 220, Mismatches: 29, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 22 0.10
27 198 0.90
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:78886589 original size:27 final size:27
Alignment explanation
Indices: 78886559--78886801 Score: 292
Period size: 27 Copynumber: 9.0 Consensus size: 27
78886549 TTTACAAAAT
*
78886559 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
78886586 TACCGACATACCCTTGTAGGATAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
78886613 TACCGAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
78886640 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
78886667 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
78886694 TAACGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * * *
78886721 TACTGAAATACCCCTATAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
**
78886748 TACTAAAATACCCCTGTAGGGTAG-AA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
78886774 TAACCGAGATACCCTTGTGGGGTA-AAA
1 T-ACCGAAATACCCCTGTAGGGTAGAAA
78886801 T
1 T
78886802 TACCATTTTG
Statistics
Matches: 186, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 184 0.99
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAA
Found at i:78886652 original size:81 final size:81
Alignment explanation
Indices: 78886559--78886801 Score: 328
Period size: 81 Copynumber: 3.0 Consensus size: 81
78886549 TTTACAAAAT
* * ** * * *
78886559 TACCGAAATACCCTTGTAGGGTAGAAATACCGACATACCCTTGTAGGATAGAAATACCGAAATAC
1 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAAATACCGAAATAC
*
78886624 CCCTGTAGGGTAGAAA
66 CCTTGTAGGGTAGAAA
* *
78886640 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAACGAAATAC
1 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAAATACCGAAATAC
78886705 CCTTGTAGGGTAGAAA
66 CCTTGTAGGGTAGAAA
* * * *
78886721 TACTGAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGTAG-AATAACCGAGATA
1 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAAAT-ACCGAAATA
*
78886785 CCCTTGTGGGGTA-AAA
65 CCCTTGTAGGGTAGAAA
78886801 T
1 T
78886802 TACCATTTTG
Statistics
Matches: 144, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 6 0.04
81 138 0.96
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (81 bp):
TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAAATACCGAAATAC
CCTTGTAGGGTAGAAA
Found at i:78887094 original size:27 final size:26
Alignment explanation
Indices: 78887050--78887100 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
78887040 CTCGCTGCAA
*
78887050 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
78887077 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
78887101 AGCAGTCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:78887184 original size:27 final size:26
Alignment explanation
Indices: 78887146--78887203 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
78887136 ATATATATAC
*
78887146 ATCTGTTCTGGTGGCCTAGCCACAAT
1 ATCTGTTCTGGTGACCTAGCCACAAT
* * *
78887172 ATCTGTATCTGGTGACTTCGTCACAAT
1 ATCTGT-TCTGGTGACCTAGCCACAAT
78887199 ATCTG
1 ATCTG
78887204 GCAGCCTCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (26 bp):
ATCTGTTCTGGTGACCTAGCCACAAT
Found at i:78887361 original size:6 final size:6
Alignment explanation
Indices: 78887323--78887376 Score: 58
Period size: 6 Copynumber: 8.8 Consensus size: 6
78887313 TTGCATTCAC
*
78887323 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
78887372 ATTCT
1 ATTCT
78887377 AGTTCTAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
5 3 0.07
6 33 0.80
7 3 0.07
8 1 0.02
9 1 0.02
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:78893521 original size:35 final size:35
Alignment explanation
Indices: 78893440--78893523 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 35
78893430 TACACTTTTT
* * *
78893440 TTGGTGTGTTTCAGTTCGACTAGTTCTAATGAACT
1 TTGGTGTGTTTTAGTTCGACTAGCTCTAATGAACA
*
78893475 TTGGTGTGTTTTAGTTGGACTAGCTC-ATATGAACA
1 TTGGTGTGTTTTAGTTCGACTAGCTCTA-ATGAACA
*
78893510 TTGTTGTGTTTTAG
1 TTGGTGTGTTTTAG
78893524 AGGGATTAGC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 1 0.02
35 42 0.98
ACGTcount: A:0.19, C:0.11, G:0.25, T:0.45
Consensus pattern (35 bp):
TTGGTGTGTTTTAGTTCGACTAGCTCTAATGAACA
Found at i:78893534 original size:35 final size:35
Alignment explanation
Indices: 78893468--78893534 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
78893458 ACTAGTTCTA
* **
78893468 ATGAACTTTGGTGTGTTTTAGTTGGACTAGCTCAT
1 ATGAACATTGGTGTGTTTTAGAGGGACTAGCTCAT
* *
78893503 ATGAACATTGTTGTGTTTTAGAGGGATTAGCT
1 ATGAACATTGGTGTGTTTTAGAGGGACTAGCT
78893535 TTTGATGGAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.22, C:0.09, G:0.27, T:0.42
Consensus pattern (35 bp):
ATGAACATTGGTGTGTTTTAGAGGGACTAGCTCAT
Found at i:78894402 original size:54 final size:54
Alignment explanation
Indices: 78894304--78894409 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 54
78894294 TACAAGTCAG
* * **
78894304 GTAGCACATGGCCTAGCACATGGGCATGTGAAGCTATTTTGAGAGTTACACAAC
1 GTAGCACATAGCCTAGCACATGGGCATGTGAAGCTACTACGAGAGTTACACAAC
* * **
78894358 GTAGCACATAGCCTGGCACATGGGCCTGTGGGGCTACTACGAGAGTTACACA
1 GTAGCACATAGCCTAGCACATGGGCATGTGAAGCTACTACGAGAGTTACACA
78894410 GCCTGACACA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (54 bp):
GTAGCACATAGCCTAGCACATGGGCATGTGAAGCTACTACGAGAGTTACACAAC
Found at i:78896217 original size:40 final size:41
Alignment explanation
Indices: 78896160--78896345 Score: 206
Period size: 40 Copynumber: 4.6 Consensus size: 41
78896150 TCGAATGATG
* * * *
78896160 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
78896200 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
78896240 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
** *
78896280 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTA-AA
* * *
78896321 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
78896346 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
Found at i:78896363 original size:80 final size:80
Alignment explanation
Indices: 78896194--78896378 Score: 193
Period size: 80 Copynumber: 2.3 Consensus size: 80
78896184 GTGCTAAGTG
** *
78896194 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
***
78896259 GCATTTGTGTGAGTT
66 GCATTTGAACGAGTT
* * *
78896274 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCG
1 ACTATATCCGGGTTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCG
*
78896336 AAGGTATTTGAACGAG-T
63 AAGGCATTTGAACGAGTT
78896353 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTATATCCGGGTTAAGA-TCCGAAGG
78896379 TACGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
79 17 0.19
80 69 0.78
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (80 bp):
ACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:78898291 original size:26 final size:26
Alignment explanation
Indices: 78898255--78898307 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
78898245 ATCTTGCACA
78898255 CCCGATGAGTGCCTAAAGTGTACTAT
1 CCCGATGAGTGCCTAAAGTGTACTAT
78898281 CCCGATGAGTGCCTAAAGTGTACTAT
1 CCCGATGAGTGCCTAAAGTGTACTAT
78898307 C
1 C
78898308 TCCTTGCTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CCCGATGAGTGCCTAAAGTGTACTAT
Found at i:78912683 original size:40 final size:41
Alignment explanation
Indices: 78912626--78912811 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 41
78912616 TCGAATGATG
* * * *
78912626 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
*
78912666 TCCGGACTAAGAT-CCGAAGGAATTTGTGC-GAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
78912706 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
** *
78912746 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTA-AA
* * *
78912787 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
78912812 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (41 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
Found at i:78912829 original size:80 final size:80
Alignment explanation
Indices: 78912660--78912844 Score: 184
Period size: 80 Copynumber: 2.3 Consensus size: 80
78912650 GTGCTAAGTG
** *
78912660 ACTATATCCGGACTAAGATCCGAAGGAATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTATATCCGGGTTAAGATCCGAAGGAATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
***
78912725 GCATTTGTGTGAGTT
66 GCATTTGAACGAGTT
* * * *
78912740 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCG
1 ACTATATCCGGGTTAAGAT-CCGAAGGAATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCG
*
78912802 AAGGTATTTGAACGAG-T
63 AAGGCATTTGAACGAGTT
78912819 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTATATCCGGGTTAAGA-TCCGAAGG
78912845 TACGTGATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
79 17 0.20
80 68 0.78
81 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (80 bp):
ACTATATCCGGGTTAAGATCCGAAGGAATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:78929972 original size:39 final size:39
Alignment explanation
Indices: 78929918--78929996 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
78929908 TAAAAATTTT
78929918 ATGCTTACTTAGTTTTATTTCCCTATTTTATAGTAAATC
1 ATGCTTACTTAGTTTTATTTCCCTATTTTATAGTAAATC
78929957 ATGCTTACTTAGTTTTATTTCCCTATTTTATAGTAAATC
1 ATGCTTACTTAGTTTTATTTCCCTATTTTATAGTAAATC
78929996 A
1 A
78929997 GGAGCTCGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.15, G:0.08, T:0.51
Consensus pattern (39 bp):
ATGCTTACTTAGTTTTATTTCCCTATTTTATAGTAAATC
Found at i:78937408 original size:30 final size:29
Alignment explanation
Indices: 78937314--78937415 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
78937304 TATAGTGAAT
* * *
78937314 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
78937343 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
78937371 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
78937401 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
78937416 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:78945256 original size:30 final size:29
Alignment explanation
Indices: 78945162--78945263 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
78945152 TATAGTGAAT
* * *
78945162 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
78945191 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
78945219 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
78945249 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
78945264 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:78948422 original size:39 final size:40
Alignment explanation
Indices: 78948364--78948464 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
78948354 AAATTGAATG
* *
78948364 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
78948403 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
78948443 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
78948465 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:78948457 original size:40 final size:40
Alignment explanation
Indices: 78948364--78948546 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
78948354 AAATTGAATG
* * * * *
78948364 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
78948403 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
78948443 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
78948483 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
78948523 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
78948547 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:78956363 original size:40 final size:40
Alignment explanation
Indices: 78956261--78956444 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
78956251 AAATTGAATG
* * * * *
78956261 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
78956301 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
78956341 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
78956381 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
78956421 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
78956445 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:78967491 original size:40 final size:40
Alignment explanation
Indices: 78967432--78967583 Score: 157
Period size: 40 Copynumber: 3.8 Consensus size: 40
78967422 AAATTGAATG
* *
78967432 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGGCAATTGTGCTGGAAATT
* * * **
78967472 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
78967512 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
78967552 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
78967584 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 3 0.03
40 85 0.93
41 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:78981052 original size:43 final size:43
Alignment explanation
Indices: 78980986--78981142 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
78980976 ATATCATACA
* *
78980986 ATGCCAATGTCCCAAAC-GCGGTCTTACATGTAATCACATATCG
1 ATGCCACTGTTCCAAACAG-GGTCTTACATGTAATCACATATCG
* *
78981029 ATACCACTGTTCCAAACAGGGTCTTACATG-AATCAAATA-CG
1 ATGCCACTGTTCCAAACAGGGTCTTACATGTAATCACATATCG
* *
78981070 ATGCCGA-TG-TCTCAAACATGGTCTTACATGTAATCACGTATCG
1 ATGCC-ACTGTTC-CAAACAGGGTCTTACATGTAATCACATATCG
* * * *
78981113 ATGCCACTATCCCAGATAGGGTCTTACATG
1 ATGCCACTGTTCCAAACAGGGTCTTACATG
78981143 AGAACACATA
Statistics
Matches: 94, Mismatches: 13, Indels: 14
0.78 0.11 0.12
Matches are distributed among these distances:
40 2 0.02
41 25 0.27
42 17 0.18
43 48 0.51
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCACTGTTCCAAACAGGGTCTTACATGTAATCACATATCG
Found at i:78981093 original size:41 final size:41
Alignment explanation
Indices: 78980981--78981105 Score: 128
Period size: 41 Copynumber: 3.0 Consensus size: 41
78980971 CATACATATC
* * * *
78980981 ATACAATGCCAATGTCCCAAACGCGGTCTTACATGTAATCAC
1 ATACGATGCC-ATGTCTCAAACACGGTCTTACATGTAATCAA
* *
78981023 ATATCGATACCACTGT-TCCAAACAGGGTCTTACATG-AATCAA
1 ATA-CGATGCCA-TGTCT-CAAACACGGTCTTACATGTAATCAA
*
78981065 ATACGATGCCGATGTCTCAAACATGGTCTTACATGTAATCA
1 ATACGATGCC-ATGTCTCAAACACGGTCTTACATGTAATCA
78981106 CGTATCGATG
Statistics
Matches: 69, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
41 26 0.38
42 19 0.28
43 24 0.35
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (41 bp):
ATACGATGCCATGTCTCAAACACGGTCTTACATGTAATCAA
Found at i:78981134 original size:84 final size:84
Alignment explanation
Indices: 78980981--78981143 Score: 227
Period size: 84 Copynumber: 1.9 Consensus size: 84
78980971 CATACATATC
* * *
78980981 ATACAATGCCAATGTCCCAAACGCGGTCTTACATGTAATCACATATCGATACCACTGTTCCAAAC
1 ATACAATGCCAATGTCCCAAACACGGTCTTACATGTAATCACATATCGATACCACTATCCCAAAC
78981046 AGGGTCTTACATGAATCAA
66 AGGGTCTTACATGAATCAA
* * * * * * * *
78981065 ATACGATGCCGATGTCTCAAACATGGTCTTACATGTAATCACGTATCGATGCCACTATCCCAGAT
1 ATACAATGCCAATGTCCCAAACACGGTCTTACATGTAATCACATATCGATACCACTATCCCAAAC
78981130 AGGGTCTTACATGA
66 AGGGTCTTACATGA
78981144 GAACACATAT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 68 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (84 bp):
ATACAATGCCAATGTCCCAAACACGGTCTTACATGTAATCACATATCGATACCACTATCCCAAAC
AGGGTCTTACATGAATCAA
Found at i:78981829 original size:14 final size:15
Alignment explanation
Indices: 78981810--78981839 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
78981800 GAATGAAATT
78981810 TTCACACAT-ATAAA
1 TTCACACATAATAAA
78981824 TTCACACATAATAAA
1 TTCACACATAATAAA
78981839 T
1 T
78981840 AAAAAAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:78993173 original size:20 final size:20
Alignment explanation
Indices: 78993150--78993233 Score: 168
Period size: 20 Copynumber: 4.2 Consensus size: 20
78993140 TCACACACCT
78993150 GTGTGGCTTGGGACACGCCC
1 GTGTGGCTTGGGACACGCCC
78993170 GTGTGGCTTGGGACACGCCC
1 GTGTGGCTTGGGACACGCCC
78993190 GTGTGGCTTGGGACACGCCC
1 GTGTGGCTTGGGACACGCCC
78993210 GTGTGGCTTGGGACACGCCC
1 GTGTGGCTTGGGACACGCCC
78993230 GTGT
1 GTGT
78993234 AGTAGGCCGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.10, C:0.29, G:0.40, T:0.21
Consensus pattern (20 bp):
GTGTGGCTTGGGACACGCCC
Found at i:78995071 original size:19 final size:19
Alignment explanation
Indices: 78995047--78995099 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
78995037 AAATGAGAAT
78995047 CAGAATTAGAATCAGGTGA
1 CAGAATTAGAATCAGGTGA
* *
78995066 CAGAATCAGAATTAGGTGA
1 CAGAATTAGAATCAGGTGA
78995085 CAGAATTAGAATCAG
1 CAGAATTAGAATCAG
78995100 AATCAGTATC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.21
Consensus pattern (19 bp):
CAGAATTAGAATCAGGTGA
Found at i:78995120 original size:25 final size:25
Alignment explanation
Indices: 78995042--78995129 Score: 74
Period size: 25 Copynumber: 3.5 Consensus size: 25
78995032 AATCAAAATG
* * *
78995042 AGAATCAGAATTAGAATCAGGTGAC
1 AGAATCAGAATCAGTATCAGGTAAC
* *
78995067 AGAATCAGAATTAGGTGA-CA-G-AATT
1 AGAATCAGAATCA-GT-ATCAGGTAA-C
78995092 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAAC
*
78995117 AGAATCAAAATCA
1 AGAATCAGAATCA
78995130 AAATGTGAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
23 1 0.02
24 5 0.10
25 39 0.76
26 5 0.10
27 1 0.02
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGTATCAGGTAAC
Found at i:78995129 original size:31 final size:31
Alignment explanation
Indices: 78995066--78995129 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
78995056 AATCAGGTGA
* * * *
78995066 CAGAATCAGAATTAGGTGACAGAATTAGAAT
1 CAGAATCAGAATCAGGTAACAGAATCAAAAT
*
78995097 CAGAATCAGTATCAGGTAACAGAATCAAAAT
1 CAGAATCAGAATCAGGTAACAGAATCAAAAT
78995128 CA
1 CA
78995130 AAATGTGAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGGTAACAGAATCAAAAT
Found at i:78995315 original size:2 final size:2
Alignment explanation
Indices: 78995308--78995341 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
78995298 ACCAGAACAG
78995308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78995342 GTGGCGAAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78995422 original size:27 final size:26
Alignment explanation
Indices: 78995374--78995425 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
78995364 GCGAGGCTAC
*
78995374 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
78995400 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
78995426 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:78995690 original size:27 final size:27
Alignment explanation
Indices: 78995660--78995989 Score: 410
Period size: 27 Copynumber: 12.2 Consensus size: 27
78995650 TAACACCCTA
** *
78995660 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
78995687 AGGGTAAAAC-GATAATTCTGTAAATCA
1 AGGGTAAAACAG-TAATTTTGTAAATCG
* *
78995714 AGGGTAAAATAGTAATTTTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
78995741 AGGGTAAAATAGTAATTCTGTCAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
78995768 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
78995795 AGGGTAAAACAGTAATTTTGTAAATCA
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
78995822 AAGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
78995849 AGGGTAAAATAGTAATTCTGTCAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
78995876 AGGGTAAAATAGTAATTTTGTAAATCA
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
78995903 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
78995930 AGGGTAAAACAATAATTCTGTAAATTG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
78995957 AGGGTAAAATAGTAATTTTATAATTCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
78995984 AGGGTA
1 AGGGTA
78995990 CTTTGATAAT
Statistics
Matches: 262, Mismatches: 39, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 260 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTTTGTAAATCG
Found at i:78995999 original size:27 final size:26
Alignment explanation
Indices: 78995968--78996114 Score: 125
Period size: 27 Copynumber: 5.5 Consensus size: 26
78995958 GGGTAAAATA
* *
78995968 GTAATTTTATAATTCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTA-TTTG
* * * * *
78995995 ATAATTTTACAAGTTGAGGGCATTTCA
1 GTAATTTTACAAATCGAGGGTATTT-G
*
78996022 GTAATTTTGCAAA-CTGAGGGTATTTCG
1 GTAATTTTACAAATC-GAGGGTATTT-G
*
78996049 GTAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTACAAATCGAGGGTATTT-G
* * *
78996076 GTAATTTTATAAACCGGGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTA-TTTG
78996103 GTAATTTTACAA
1 GTAATTTTACAA
78996115 CTGTGGGTAT
Statistics
Matches: 96, Mismatches: 20, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
26 3 0.03
27 89 0.93
28 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAATCGAGGGTATTTG
Found at i:78996025 original size:54 final size:54
Alignment explanation
Indices: 78995967--78996114 Score: 156
Period size: 54 Copynumber: 2.7 Consensus size: 54
78995957 AGGGTAAAAT
* * * * *
78995967 AGTAATTTTATAATTCGAGGGTACTTTGATAATTTTACAAGTTGAGGGCATTTC
1 AGTAATTTTATAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGACATTTC
** * *
78996021 AGTAATTTTGCAAA-CTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTATAAATC-GAGGGTACTTT-GGTAATTTTACAAATCGAGGACATTTC
* * *
78996075 GGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA
1 AGTAATTTTATAAATCGAGGGTACTTTGGTAATTTTACAA
78996115 CTGTGGGTAT
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
53 4 0.05
54 69 0.90
55 4 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
AGTAATTTTATAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGACATTTC
Found at i:78996132 original size:26 final size:26
Alignment explanation
Indices: 78995968--78996135 Score: 115
Period size: 27 Copynumber: 6.3 Consensus size: 26
78995958 GGGTAAAATA
* *
78995968 GTAATTTTATAATTCGAGGGTACTTT-G
1 GTAATTTTACAACT-GAGGGTA-TTTCG
* * * *
78995995 ATAATTTTACAAGTTGAGGGCATTTCA
1 GTAATTTTACAA-CTGAGGGTATTTCG
*
78996022 GTAATTTTGCAAACTGAGGGTATTTCG
1 GTAATTTTAC-AACTGAGGGTATTTCG
* * *
78996049 GTAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTACAACT-GAGGGTATTTCG
* * *
78996076 GTAATTTTATAAACCGGGGGTACTTT-G
1 GTAATTTTA-CAACTGAGGGTA-TTTCG
* **
78996103 GTAATTTTACAACTGTGGGTATTTTA
1 GTAATTTTACAACTGAGGGTATTTCG
78996129 GTAATTT
1 GTAATTT
78996136 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 22, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
25 3 0.03
26 22 0.20
27 78 0.70
28 9 0.08
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAACTGAGGGTATTTCG
Found at i:78997827 original size:16 final size:17
Alignment explanation
Indices: 78997798--78997829 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
78997788 AAGGTCACTT
78997798 TCATAATGATCATGAAC
1 TCATAATGATCATGAAC
78997815 TCATAAT-ATCATGAA
1 TCATAATGATCATGAA
78997830 GCCAATGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (17 bp):
TCATAATGATCATGAAC
Found at i:79001430 original size:48 final size:46
Alignment explanation
Indices: 79001359--79001631 Score: 248
Period size: 48 Copynumber: 5.7 Consensus size: 46
79001349 TGATATGTGT
*
79001359 GCTAGTGTAAGACTATGTCTGGGACATGGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG--ACATTATGAGA
* * * *
79001407 GCTAGTGTAAGACCATGTTTGGGACATGGCAACGG-CATTAATATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACA-T--TATGAGA
* *
79001455 GCTAGTGTAAGACCATGTCTCGGACATGACATCGG-CATTGA-GACGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACATT-ATGA-G--A
* * * *
79001503 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTAATATGTGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-A-CATTATGAGA
* *
79001551 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACATT---ATGAGA
* * *
79001599 GCTAGTGGAAGACCATGTTTGGAACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
79001632 AGCAGTTCAC
Statistics
Matches: 184, Mismatches: 27, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
45 6 0.03
46 3 0.02
47 1 0.01
48 169 0.92
50 2 0.01
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACATTATGAGA
Found at i:79001630 original size:96 final size:96
Alignment explanation
Indices: 79001351--79001631 Score: 406
Period size: 96 Copynumber: 2.9 Consensus size: 96
79001341 CATTTGGGTG
* * *
79001351 ATATGTGTGCTAGTGTAAGACTATGTCTGGGACATGGCATCGGCCACATT---ATGAGAGCTAGT
1 ATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG---CATTGAGACGAGAGCTAGT
*
79001413 GTAAGACCATGTTTGGGACATGGCAACGGCATTA
63 GTAAGACCATGTTTGGGACATGGCATCGGCATTA
* * *
79001447 ATATGTGTGCTAGTGTAAGACCATGTCTCGGACATGACATCGGCATTGAGACGAAAGCTAGTGTA
1 ATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTA
* *
79001512 AGACCATGTCTGGGACATGGCATCGGTATTA
66 AGACCATGTTTGGGACATGGCATCGGCATTA
* *
79001543 ATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGGA
1 ATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTA
*
79001608 AGACCATGTTTGGAACATGGCATC
66 AGACCATGTTTGGGACATGGCATC
79001632 AGCAGTTCAC
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
93 4 0.02
96 163 0.98
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (96 bp):
ATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTA
AGACCATGTTTGGGACATGGCATCGGCATTA
Found at i:79002954 original size:15 final size:15
Alignment explanation
Indices: 79002934--79002963 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79002924 ATTATGAAAG
79002934 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
79002949 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
79002964 GATTTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:79003649 original size:56 final size:56
Alignment explanation
Indices: 79003583--79003707 Score: 196
Period size: 56 Copynumber: 2.2 Consensus size: 56
79003573 TCAATACATA
* *
79003583 TGTGCGAGTAAGACCACGCTTAATACGTTGGCATCAATATGTGATTCTGATATGTG
1 TGTGCGAGTAAGACCACACTTAATACGTTGGCATCAATATGTGATTCTGATATATG
* * * *
79003639 TGTGCAAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCTGATTTATG
1 TGTGCGAGTAAGACCACACTTAATACGTTGGCATCAATATGTGATTCTGATATATG
79003695 TGTGCGAGTAAGA
1 TGTGCGAGTAAGA
79003708 TCCTGTCTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (56 bp):
TGTGCGAGTAAGACCACACTTAATACGTTGGCATCAATATGTGATTCTGATATATG
Found at i:79006652 original size:37 final size:37
Alignment explanation
Indices: 79006505--79006654 Score: 246
Period size: 37 Copynumber: 4.1 Consensus size: 37
79006495 CTTTAGCTCA
* * *
79006505 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCA
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
79006542 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
79006579 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
79006616 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
79006653 GA
1 GA
79006655 ATATATTTCC
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:79006855 original size:48 final size:48
Alignment explanation
Indices: 79006801--79007081 Score: 454
Period size: 48 Copynumber: 5.8 Consensus size: 48
79006791 GCACATCGCC
* *
79006801 TACATATTTCACACTATCCATTCGGCTTTACCAAATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
79006849 TACATATTTCACACTATCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79006897 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
79006945 TATATATTTCACACTATCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79006993 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCCCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
79007043 TATATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
79007082 TGCATGTTCA
Statistics
Matches: 218, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
48 180 0.83
50 38 0.17
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79007103 original size:47 final size:47
Alignment explanation
Indices: 79006809--79007175 Score: 309
Period size: 48 Copynumber: 7.7 Consensus size: 47
79006799 CCTACATATT
* * * *
79006809 TCACACTATCCATTCGGCTTTACCAAATATACATATCTCATACATAT-T
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT--ATATCA
* * * *
79006857 TCACACTATCCATTCGACTTTACCACATATACATATCTCATACATAT-T
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT--ATATCA
* *
79006905 TCACACTAGCCATTCGGCTTTACCACATATACATATCCCATATAT-A
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATCA
* * *
79006951 TTTCACACTATCCATTCGGCTTTACCACATATACATATCTCATACATAT-T
1 --TCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT--ATATCA
* * *
79007001 TCACACTAGCCATTCGGCTTTACCACATATACATATCCCATATATATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT-CA
*
79007049 TTTCACATTAGCCATTCGGCTTTACCACATATATGCATGT-TCATAT-TCA
1 --TCACATTAGCCATTCGGCTTTACCACATATA--CATATCTCATATATCA
* * * * * *
79007098 TCACATTGGTCATTCGGCCTTATCACACATATGCAT-GCTCACAT-TCA
1 TCACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATATATCA
* * *
79007145 TCACATTGGCCATTCGGCCTTATCACATATA
1 TCACATTAGCCATTCGGCTTTACCACATATA
79007176 TGCATGCTCA
Statistics
Matches: 281, Mismatches: 25, Indels: 29
0.84 0.07 0.09
Matches are distributed among these distances:
45 7 0.02
46 8 0.03
47 51 0.18
48 163 0.58
49 8 0.03
50 35 0.12
51 5 0.02
52 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATCA
Found at i:79007177 original size:47 final size:47
Alignment explanation
Indices: 79007051--79007197 Score: 231
Period size: 47 Copynumber: 3.1 Consensus size: 47
79007041 TATATATATT
* * * * *
79007051 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
79007098 TCACATTGGTCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
79007145 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
79007192 TCACAT
1 TCACAT
79007198 AAAATCCTAA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:79012469 original size:18 final size:18
Alignment explanation
Indices: 79012418--79012469 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
79012408 GAGCCCCTTT
*
79012418 CTCACTTTTTCATCATCC
1 CTCACTTATTCATCATCC
***
79012436 CTCA-TCCCTCATTCATCC
1 CTCACTTATTCA-TCATCC
79012454 CTCACTTATTCATCAT
1 CTCACTTATTCATCAT
79012470 TCTCTCCTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 4 0.15
18 18 0.69
19 4 0.15
ACGTcount: A:0.19, C:0.40, G:0.00, T:0.40
Consensus pattern (18 bp):
CTCACTTATTCATCATCC
Found at i:79016363 original size:49 final size:49
Alignment explanation
Indices: 79016234--79016590 Score: 578
Period size: 49 Copynumber: 7.4 Consensus size: 49
79016224 CCGTTCGGGA
* *
79016234 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79016281 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79016328 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79016377 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79016426 CATATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79016475 CTTATCACATATATATACACTTTCACATTCATCACGTAGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79016524 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79016573 CTTATCACATATATATAC
1 CTTATCACATATATATAC
79016591 CTCATACAAA
Statistics
Matches: 286, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 47 0.16
49 238 0.83
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79024341 original size:38 final size:38
Alignment explanation
Indices: 79024298--79024388 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 38
79024288 GCAAGCTATA
* * * *
79024298 TGCTGGAAATATATCCGGGTTAAATCCCACAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAG
*
79024336 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAG
79024374 TGCTGGTATTATATC
1 TGCTGGTATTATATC
79024389 TGAGCTTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAG
Found at i:79024417 original size:40 final size:38
Alignment explanation
Indices: 79024269--79024420 Score: 133
Period size: 38 Copynumber: 3.9 Consensus size: 38
79024259 ATTTGATGTG
* * * * *
79024269 TATCCGAGCTTAAAGACCCGCAAGCTATATGCTGGAAATA
1 TATCCG-GCTTAAA-TCCCGCAAGCTTTGTGCTGGTATTA
* * * *
79024309 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTA
1 TATCCGGCTTAAATCCCGCAAGCTTTGTGCTGGTATTA
* * * *
79024347 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGCTTAAATCCCGCAAGCTTTGTGCTGGTATTA
* *
79024385 TATCTGAGCTTAAAGTCCCGCAAGTTTTGTGCTGGT
1 TATCCG-GCTTAAA-TCCCGCAAGCTTTGTGCTGGT
79024421 GACTGGATTC
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
38 57 0.62
39 12 0.13
40 23 0.25
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (38 bp):
TATCCGGCTTAAATCCCGCAAGCTTTGTGCTGGTATTA
Found at i:79033714 original size:27 final size:28
Alignment explanation
Indices: 79033663--79033717 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
79033653 ATAGCCGAAC
*
79033663 CTAGTTTAAATCACACATTTAGTGCCAAG
1 CTAGATTAAATCACACA-TTAGTGCCAAG
79033692 CTAGATTAAATCACAC-TTAGTGCCAA
1 CTAGATTAAATCACACATTAGTGCCAA
79033718 AACTTCTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 10 0.40
29 15 0.60
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (28 bp):
CTAGATTAAATCACACATTAGTGCCAAG
Found at i:79041026 original size:29 final size:29
Alignment explanation
Indices: 79040984--79041043 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
79040974 CAAATAGCCG
*
79040984 AAGCTAGTTTAAATCGCACACTTAGTGCC
1 AAGCTAGTTTAAATCACACACTTAGTGCC
79041013 AAGCTAGTTTAAATCACACACTTAGTGCC
1 AAGCTAGTTTAAATCACACACTTAGTGCC
79041042 AA
1 AA
79041044 AACTTCCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTTAAATCACACACTTAGTGCC
Found at i:79043853 original size:27 final size:25
Alignment explanation
Indices: 79043823--79043925 Score: 98
Period size: 26 Copynumber: 3.9 Consensus size: 25
79043813 ATTACCAAAG
*
79043823 TACCCTCGATTTATAGAATTACTGTCT
1 TACCCTCGA-TTAT-GAATTACTGTTT
* * *
79043850 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGA-TTA-TGAATTACTGTTT
* *
79043877 TACCCTCGATTGTGAAATTACCGTTT
1 TACCCTCGATTATG-AATTACTGTTT
79043903 TACCCTCGATTATGATATTACTG
1 TACCCTCGATTATGA-ATTACTG
79043926 AAATACCCCT
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.03
26 30 0.48
27 30 0.48
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.42
Consensus pattern (25 bp):
TACCCTCGATTATGAATTACTGTTT
Found at i:79043975 original size:27 final size:27
Alignment explanation
Indices: 79043945--79044043 Score: 146
Period size: 27 Copynumber: 3.7 Consensus size: 27
79043935 TATAGGGTAG
79043945 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
79043972 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
79043999 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
79044026 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
79044044 GATTTACAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.05
27 56 0.89
28 4 0.06
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:79043986 original size:54 final size:54
Alignment explanation
Indices: 79043926--79044046 Score: 147
Period size: 54 Copynumber: 2.2 Consensus size: 54
79043916 GATATTACTG
* *
79043926 AAATACCCCT-ATAGGGTAGAATTACCAAAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCCTGAT-GGGTAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCA
* * ** *
79043980 AAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCCTGATGGGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCA
79044034 AAATACCCCTGAT
1 AAATACCCCTGAT
79044047 TTACAAAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
54 54 0.96
55 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.27
Consensus pattern (54 bp):
AAATACCCCTGATGGGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCA
Found at i:79044048 original size:27 final size:27
Alignment explanation
Indices: 79043945--79044057 Score: 140
Period size: 27 Copynumber: 4.2 Consensus size: 27
79043935 TATAGGGTAG
79043945 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* *
79043972 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
79043999 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
**
79044026 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
79044053 AATTA
1 AATTA
79044058 TAGAAATACC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
26 3 0.04
27 66 0.90
28 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:79044055 original size:54 final size:54
Alignment explanation
Indices: 79043945--79044125 Score: 175
Period size: 54 Copynumber: 3.3 Consensus size: 54
79043935 TATAGGGTAG
* * **
79043945 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTAA
1 AATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCACTGGTTTACAA
* *
79043999 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTACAA
** * * * *** **
79044053 AATTATAGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCGTTGGTTTACAA
1 AATTACCGAAATACCC-TCAATTTGT-AAAATTACCAAAATACCACTGGTTTACAA
*
79044109 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
79044126 TGGTTTGTAG
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
54 60 0.57
55 8 0.08
56 37 0.35
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTACAA
Found at i:79044128 original size:27 final size:27
Alignment explanation
Indices: 79043945--79044131 Score: 117
Period size: 27 Copynumber: 6.9 Consensus size: 27
79043935 TATAGGGTAG
* * * **
79043945 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCCTTGGTTTACAA
* **
79043972 AATTACCAAAATACCAC-TGGTTTGTAA
1 AATTACCGAAATACC-CTTGGTTTACAA
*** **
79043999 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCGAAATACCCTTGGTTTACAA
* * *
79044026 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTTGGTTTACAA
** *
79044053 AATTATAGAAATACCCTTGACTTT-CTAAA
1 AATTACCGAAATACCCTTG-GTTTAC--AA
** *
79044082 AATTATGGAAATACCGTTGGTTTACAA
1 AATTACCGAAATACCCTTGGTTTACAA
*
79044109 AATTACTGAAATACCCTTGGTTT
1 AATTACCGAAATACCCTTGGTTT
79044132 GTAGATTTAC
Statistics
Matches: 132, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 7 0.05
29 20 0.15
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGGTTTACAA
Found at i:79044215 original size:27 final size:27
Alignment explanation
Indices: 79044185--79044276 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
79044175 ACCCCTATTA
*
79044185 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
79044212 GGTAAAGTGATCGTAAAGCCCCTATAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
79044239 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
79044266 GGTAAAATGAC
1 GGTAAAATGAC
79044277 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Done.