Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 255 of 438
Found at i:79045177 original size:25 final size:26
Alignment explanation
Indices: 79045078--79045199 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
79045068 GAGGAAGTGC
*
79045078 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
79045104 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
79045130 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
79045156 AAAAGGGCTT-TGCCCCAATTTA-CC
1 AAAAGGGCTTATGCCCCAGTTTATCG
79045180 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
79045200 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
24 19 0.21
25 11 0.12
26 60 0.67
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:79045493 original size:31 final size:31
Alignment explanation
Indices: 79045458--79045536 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
79045448 CGTTTACAGT
*
79045458 AAAGGCTTTGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
79045489 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
79045520 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
79045537 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:79049128 original size:48 final size:47
Alignment explanation
Indices: 79049057--79049233 Score: 171
Period size: 48 Copynumber: 3.7 Consensus size: 47
79049047 TATGTGCGCT
* *
79049057 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGACATTATGAGAACC
1 AGTGTAAGACCATGTCTTGGACATGGCATCGGCG-CATTATGAGAGCC
* * *
79049105 AGTGTAAGACCATGTCTTGGACATGGCA-CTG-GTATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTTGGACATGGCATCGGCGCATT---ATGAGAGCC
** * * ** *
79049153 AGTGTAAGACCATGTCTAAGACATGCCATCGGCCTCAACATGTGAGCC
1 AGTGTAAGACCATGTCTTGGACATGGCATCGG-CGCATTATGAGAGCC
79049201 AGTGTAAGACCATGT-TTGGAACATGGCATCGGC
1 AGTGTAAGACCATGTCTTGG-ACATGGCATCGGC
79049234 AGTTCACCCT
Statistics
Matches: 104, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
45 3 0.03
46 1 0.01
47 5 0.05
48 92 0.88
49 2 0.02
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTTGGACATGGCATCGGCGCATTATGAGAGCC
Found at i:79049225 original size:96 final size:96
Alignment explanation
Indices: 79049054--79049228 Score: 253
Period size: 96 Copynumber: 1.8 Consensus size: 96
79049044 TGATATGTGC
** * * **
79049054 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGACATTATGAGAACCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAAGACATGCCATCGGCCACAACATGAGAACCAGTGTAAGACCATG
79049119 TCTTGGACATGGCACTGGTATTGAGATGAGA
66 TCTTGGACATGGCACTGGTATTGAGATGAGA
* * *
79049150 GCTAGTGTAAGACCATGTCTAAGACATGCCATCGGCCTCAACATGTGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAAGACATGCCATCGGCCACAACATGAGAACCAGTGTAAGACCATG
79049215 T-TTGGAACATGGCA
66 TCTTGG-ACATGGCA
79049229 TCGGCAGTTC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
95 4 0.06
96 65 0.94
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTAAGACATGCCATCGGCCACAACATGAGAACCAGTGTAAGACCATG
TCTTGGACATGGCACTGGTATTGAGATGAGA
Found at i:79052595 original size:49 final size:49
Alignment explanation
Indices: 79052527--79052817 Score: 325
Period size: 51 Copynumber: 5.8 Consensus size: 49
79052517 TCTATTGTGA
* * *
79052527 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATT
* * *
79052576 GGTCGCATGTGTAGTACTAACTGCAGGCTACTATGCGTACCCG-ATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCGAATAA-TT
* * *
79052626 CGATCACATGTGTAGGACTAAGTGCAGGCTACTATGCGTACCCG-ATAACTTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCGAATAA--TT
* * * **
79052678 GATCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATT
* * * *
79052727 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATT
* *
79052777 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
79052818 AGATAGCTTT
Statistics
Matches: 204, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
49 74 0.36
50 46 0.23
51 82 0.40
52 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATT
Found at i:79052852 original size:150 final size:151
Alignment explanation
Indices: 79052535--79052855 Score: 355
Period size: 150 Copynumber: 2.1 Consensus size: 151
79052525 GAGGTCACGT
* * * * *
79052535 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATTATTGGTCGCATGTGTAGTACTAACTGC
1 GTGTAGAAATAAGTGCAGGCTACTACGTGTACCAAATGATTGGTCACATGTGTAGTACTAACTGC
*
79052600 AGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGGACTAAGTGCAGGCTACTATGCGT
66 AGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGGACTAAGTGCAGGCTACTATGCGT
* *
79052665 ACCCGATAACTTTGATCACAT
131 ACCAGATAACTTTGATCACAA
* * * * * * *
79052686 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATGGTTAGGTCACGTGTGTAGTACTAAGTG
1 GTGTAGAAATAAGTGCAGGCTACTACGTGTACCAAATGATT-GGTCACATGTGTAGTACTAACTG
* * * * * *
79052751 TAGGCTACTACGTGTA-CTGAATAA-TT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
65 CAGGCTACTACGCGTACCCG-ATAACTTCGATCACATGTGTAGGACTAAGTGCAGGCTACTATGC
* *
79052813 GTACCAGATAGCTTTG-GCTACAA
129 GTACCAGATAACTTTGATC-ACAA
*
79052836 GTGT-GAAAATATGTGCAGGC
1 GTGTAG-AAATAAGTGCAGGC
79052856 AACTGAGTAT
Statistics
Matches: 144, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
149 2 0.01
150 65 0.45
151 40 0.28
152 37 0.26
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (151 bp):
GTGTAGAAATAAGTGCAGGCTACTACGTGTACCAAATGATTGGTCACATGTGTAGTACTAACTGC
AGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGGACTAAGTGCAGGCTACTATGCGT
ACCAGATAACTTTGATCACAA
Found at i:79056247 original size:56 final size:56
Alignment explanation
Indices: 79056174--79056542 Score: 499
Period size: 56 Copynumber: 6.6 Consensus size: 56
79056164 ATGTGACATT
* * * * *
79056174 GATATGTGACTCTGATATATGTGTGTGAGTAAGACCACGTTTAATACGGTGGCATC
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATC
*
79056230 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCCAC-ATTACATACGTTGGCATC
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTA-ATACGTTGGCATC
* * * * *
79056286 GATATGTGACTCTGATATATGTGTACGAGTAACTCCACGTTTAATATGTTGGCATC
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATC
* *
79056342 GATATGTGATTCCGACATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATC
* * * *
79056398 GATATGTGATTCCGATACATCTGTGCGAGTAAGTCCAC-ATTACATATGTTGGCATC
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTA-ATACGTTGGCATC
* * ** *
79056454 GATATGTGACTCTGATATATGTGTGCGAGTAAGTCCAAATTTAATACGTTGGCAAC
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATC
*
79056510 GATATGTGATTCCGATATATGTGTACGAGTAAG
1 GATATGTGATTCCGATATATGTGTGCGAGTAAG
79056543 ACTGTAACAC
Statistics
Matches: 273, Mismatches: 36, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
55 6 0.02
56 261 0.96
57 6 0.02
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (56 bp):
GATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATC
Found at i:79056452 original size:168 final size:168
Alignment explanation
Indices: 79056174--79056544 Score: 607
Period size: 168 Copynumber: 2.2 Consensus size: 168
79056164 ATGTGACATT
* * *
79056174 GATATGTGACTCTGATATATGTGTGTGAGTAAGACCACGTTTAATACGGTGGCATCGATATGTGA
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTAATACGGTGGCATCGATATGTGA
* *
79056239 TTCCGATATATGTGTGCGAGTAAGTCCACATTACATACGTTGGCATCGATATGTGACTCTGATAT
66 TTCCGATACATCTGTGCGAGTAAGTCCACATTACATACGTTGGCATCGATATGTGACTCTGATAT
** * *
79056304 ATGTGTACGAGTAACTCCACGTTTAATATGTTGGCATC
131 ATGTGTACGAGTAACTCCAAATTTAATACGTTGGCAAC
* *
79056342 GATATGTGATTCCGACATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGA
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTAATACGGTGGCATCGATATGTGA
*
79056407 TTCCGATACATCTGTGCGAGTAAGTCCACATTACATATGTTGGCATCGATATGTGACTCTGATAT
66 TTCCGATACATCTGTGCGAGTAAGTCCACATTACATACGTTGGCATCGATATGTGACTCTGATAT
* *
79056472 ATGTGTGCGAGTAAGTCCAAATTTAATACGTTGGCAAC
131 ATGTGTACGAGTAACTCCAAATTTAATACGTTGGCAAC
*
79056510 GATATGTGATTCCGATATATGTGTACGAGTAAGAC
1 GATATGTGATTCCGATATATGTGTGCGAGTAAGAC
79056545 TGTAACACCC
Statistics
Matches: 187, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
168 187 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (168 bp):
GATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTAATACGGTGGCATCGATATGTGA
TTCCGATACATCTGTGCGAGTAAGTCCACATTACATACGTTGGCATCGATATGTGACTCTGATAT
ATGTGTACGAGTAACTCCAAATTTAATACGTTGGCAAC
Found at i:79059851 original size:59 final size:59
Alignment explanation
Indices: 79059780--79059905 Score: 245
Period size: 59 Copynumber: 2.2 Consensus size: 59
79059770 TATAGGTATG
79059780 AGTTGTTAAAGTTGGAATTATGAGAATATGTATGTTAGTCTATGAGCATTTGGTTATAT
1 AGTTGTTAAAGTTGGAATTATGAGAATATGTATGTTAGTCTATGAGCATTTGGTTATAT
79059839 AGTTGTTAAAGTTGGAATTATGAGAATATGTATGTTAGTCTATGAGCATTTGGTTATAT
1 AGTTGTTAAAGTTGGAATTATGAGAATATGTATGTTAGTCTATGAGCATTTGGTTATAT
79059898 AGTT-TTAA
1 AGTTGTTAA
79059906 TATGCCTTTG
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
58 4 0.06
59 63 0.94
ACGTcount: A:0.31, C:0.03, G:0.23, T:0.43
Consensus pattern (59 bp):
AGTTGTTAAAGTTGGAATTATGAGAATATGTATGTTAGTCTATGAGCATTTGGTTATAT
Found at i:79059874 original size:29 final size:29
Alignment explanation
Indices: 79059783--79059875 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
79059773 AGGTATGAGT
79059783 TGTTAAAGTTGGAATTATGAGAATATGTA
1 TGTTAAAGTTGGAATTATGAGAATATGTA
*** * *
79059812 TGTTAGTCTATGAGCATT-TG-GTTATATAGT-
1 TGTTAAAGT-TG-GAATTATGAG-AATAT-GTA
79059842 TGTTAAAGTTGGAATTATGAGAATATGTA
1 TGTTAAAGTTGGAATTATGAGAATATGTA
79059871 TGTTA
1 TGTTA
79059876 GTCTATGAGC
Statistics
Matches: 47, Mismatches: 10, Indels: 14
0.66 0.14 0.20
Matches are distributed among these distances:
28 6 0.13
29 20 0.43
30 15 0.32
31 6 0.13
ACGTcount: A:0.32, C:0.02, G:0.24, T:0.42
Consensus pattern (29 bp):
TGTTAAAGTTGGAATTATGAGAATATGTA
Found at i:79061496 original size:2 final size:2
Alignment explanation
Indices: 79061489--79061513 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79061479 GTATAATGTA
79061489 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
79061514 AAGGTTAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79065034 original size:17 final size:19
Alignment explanation
Indices: 79065008--79065044 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
79064998 TGTATAACTC
79065008 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
79065026 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
79065044 A
1 A
79065045 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:79071569 original size:37 final size:37
Alignment explanation
Indices: 79071519--79071593 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
79071509 ATTATTTTGA
79071519 AGTAGGGTTCATGTTTAAAAATTTACCCGTGTGTAAC
1 AGTAGGGTTCATGTTTAAAAATTTACCCGTGTGTAAC
79071556 AGTAGGGTTCATGTTTAAAAATTTACCCGTGTGTAAC
1 AGTAGGGTTCATGTTTAAAAATTTACCCGTGTGTAAC
79071593 A
1 A
79071594 TGCATGTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (37 bp):
AGTAGGGTTCATGTTTAAAAATTTACCCGTGTGTAAC
Found at i:79072567 original size:17 final size:19
Alignment explanation
Indices: 79072541--79072577 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
79072531 TGTATAACTC
79072541 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
79072559 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
79072577 A
1 A
79072578 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:79078209 original size:40 final size:40
Alignment explanation
Indices: 79078165--79078307 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
79078155 TGACAAATCA
* *
79078165 GCTATATGTGGCACTTAGTGTGCGATTCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGATTCGAGATAGCTTCG
* *
79078205 GCTATATATGGCGCTTAGTGTGCGAGATCGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGA-TTCGAGATAGCTTCG
* ** ** *
79078246 ACTATATATATCACTTAGTGTGCGATTTAAGATAGTTTCG
1 GCTATATATGGCACTTAGTGTGCGATTCGAGATAGCTTCG
* **
79078286 GCTATGTAAAGCACTTAGTGTG
1 GCTATATATGGCACTTAGTGTG
79078308 TGAGATATCG
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 52 0.60
41 34 0.40
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGATTCGAGATAGCTTCG
Found at i:79078251 original size:41 final size:40
Alignment explanation
Indices: 79078166--79078270 Score: 138
Period size: 41 Copynumber: 2.6 Consensus size: 40
79078156 GACAAATCAG
* * *
79078166 CTATATGTGGCACTTAGTGTGCGATTCGACATAGCTTCGG
1 CTATATATGGCACTTAGTGTGCGAATCGACATAGCTTCGA
* *
79078206 CTATATATGGCGCTTAGTGTGCGAGATCGAGATAGCTTCGA
1 CTATATATGGCACTTAGTGTGCGA-ATCGACATAGCTTCGA
**
79078247 CTATATATATCACTTAGTGTGCGA
1 CTATATATGGCACTTAGTGTGCGA
79078271 TTTAAGATAG
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 22 0.39
41 34 0.61
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (40 bp):
CTATATATGGCACTTAGTGTGCGAATCGACATAGCTTCGA
Found at i:79079375 original size:12 final size:12
Alignment explanation
Indices: 79079358--79079405 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
79079348 TTTTGGCACG
79079358 GCCTAGCACACA
1 GCCTAGCACACA
*
79079370 GCCTAGCACACG
1 GCCTAGCACACA
* *
79079382 GCCTGGCACACT
1 GCCTAGCACACA
*
79079394 GGCTAG-ACACA
1 GCCTAGCACACA
79079405 G
1 G
79079406 GCGTGTCTGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 5 0.17
12 25 0.83
ACGTcount: A:0.27, C:0.38, G:0.25, T:0.10
Consensus pattern (12 bp):
GCCTAGCACACA
Found at i:79079399 original size:24 final size:25
Alignment explanation
Indices: 79079354--79079404 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
79079344 ACAGTTTTGG
79079354 CACGGCCTAGCACACAGCCTAG-CA
1 CACGGCCTAGCACACAGCCTAGACA
* * *
79079378 CACGGCCTGGCACACTGGCTAGACA
1 CACGGCCTAGCACACAGCCTAGACA
79079403 CA
1 CA
79079405 GGCGTGTCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.27, C:0.39, G:0.24, T:0.10
Consensus pattern (25 bp):
CACGGCCTAGCACACAGCCTAGACA
Found at i:79082534 original size:40 final size:40
Alignment explanation
Indices: 79082389--79082552 Score: 150
Period size: 40 Copynumber: 4.1 Consensus size: 40
79082379 CGGGATTTAA
* * * * * *
79082389 CCGGATTTAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTTGGGTCTTAGC
* *** * *
79082429 CCGGATTTGGTAACTTGCACAATTGCCTTTGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTTGGGTCTTAGC
* *
79082469 CCGGATATAACAACTCGCACGAATGCCTTTGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTTGGGTCTTAGC
* * * *
79082509 CCGGATATAATC-ACTAGGATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTAGCACAAATGCCTTTGGGTCTTAGC
79082549 CCGG
1 CCGG
79082553 GTGTCATTCA
Statistics
Matches: 102, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
40 101 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTTGGGTCTTAGC
Found at i:79085437 original size:29 final size:29
Alignment explanation
Indices: 79085404--79085534 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
79085394 GTGACGAGAT
79085404 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
79085433 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
79085462 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
79085491 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
79085520 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
79085535 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:79093494 original size:29 final size:29
Alignment explanation
Indices: 79093462--79093524 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
79093452 TGCACGAGAT
79093462 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
79093491 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
79093520 CGGCA
1 TGGCA
79093525 TGGGTGTGCG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:79101550 original size:22 final size:23
Alignment explanation
Indices: 79101520--79101611 Score: 95
Period size: 22 Copynumber: 4.0 Consensus size: 23
79101510 CGAGATTGGC
79101520 ACTAAGTGTGCATGCTGGAAATG
1 ACTAAGTGTGCATGCTGGAAATG
79101543 A-TAAGTGTGCATGCT-G-AATG
1 ACTAAGTGTGCATGCTGGAAATG
79101563 ACT--GTGTGCATGCTGGAAATATATGG
1 ACTAAGTGTGCATGCTGG--A-A-AT-G
79101589 CACTAAGTGTGCATGCTGGAAAT
1 -ACTAAGTGTGCATGCTGGAAAT
79101612 ATACGGCACT
Statistics
Matches: 58, Mismatches: 0, Indels: 20
0.74 0.00 0.26
Matches are distributed among these distances:
19 11 0.19
20 6 0.10
21 2 0.03
22 14 0.24
23 1 0.02
24 1 0.02
25 4 0.07
26 2 0.03
27 4 0.07
29 13 0.22
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.28
Consensus pattern (23 bp):
ACTAAGTGTGCATGCTGGAAATG
Found at i:79101608 original size:29 final size:29
Alignment explanation
Indices: 79101566--79101687 Score: 104
Period size: 29 Copynumber: 4.2 Consensus size: 29
79101556 CTGAATGACT
79101566 GTGTGCATGCTGGAAATATATGGCACTAA
1 GTGTGCATGCTGGAAATATATGGCACTAA
* **
79101595 GTGTGCATGCTGGAAATATACGGCACTGG
1 GTGTGCATGCTGGAAATATATGGCACTAA
* *** *
79101624 GTGTGCGA-GCTCGAAGGGTATGGCACTAT
1 GTGTGC-ATGCTGGAAATATATGGCACTAA
** * *
79101653 GTGTGCGGGCT-TAAATCACATGGCACTAA
1 GTGTGCATGCTGGAAAT-ATATGGCACTAA
79101682 GTGTGC
1 GTGTGC
79101688 GAAATCGAGT
Statistics
Matches: 73, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
28 2 0.03
29 70 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
GTGTGCATGCTGGAAATATATGGCACTAA
Found at i:79113581 original size:40 final size:40
Alignment explanation
Indices: 79113496--79113646 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
79113486 AATTGAATGA
* * *
79113496 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
79113536 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
79113577 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
79113616 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
79113647 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:79113660 original size:40 final size:40
Alignment explanation
Indices: 79113532--79113662 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
79113522 TATGCTGGAA
* * *
79113532 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
79113572 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
79113612 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
79113652 ATTATATCCGG
1 ATTATATCCGG
79113663 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:79115455 original size:42 final size:42
Alignment explanation
Indices: 79115405--79115490 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
79115395 GATTTATGGA
79115405 GTATAAATGCTTGAGAAATGCCTTGATGAGGTATGATTTTAG
1 GTATAAATGCTTGAGAAATGCCTTGATGAGGTATGATTTTAG
79115447 GTATAAATGCTTGAGAAATGCCTTGATGAGGTATGATTTTAG
1 GTATAAATGCTTGAGAAATGCCTTGATGAGGTATGATTTTAG
79115489 GT
1 GT
79115491 GTTATGTGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (42 bp):
GTATAAATGCTTGAGAAATGCCTTGATGAGGTATGATTTTAG
Found at i:79128415 original size:27 final size:27
Alignment explanation
Indices: 79128399--79128649 Score: 312
Period size: 27 Copynumber: 9.3 Consensus size: 27
79128389 CGACTTGTAA
79128399 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
79128426 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
**
79128453 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
79128480 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
79128507 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
** *
79128534 AATTACTGTTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
79128561 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
*
79128588 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
79128615 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
79128642 AATTACCA
1 AATTACCA
79128650 AAATACCCTT
Statistics
Matches: 199, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.02
27 191 0.96
28 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:79128656 original size:27 final size:27
Alignment explanation
Indices: 79128410--79128737 Score: 93
Period size: 27 Copynumber: 12.2 Consensus size: 27
79128400 ATTACCATTT
* ***
79128410 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* *****
79128437 TACCCTCAGTTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
79128464 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ***
79128491 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * *****
79128518 TATCCTCGATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * * ***
79128545 TCCCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ****
79128572 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
79128599 TACCCTCAGTTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
*
79128626 TACCTTCAATTTACAGAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
*** * * *
79128653 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
* ** * *
79128680 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AATTTACAGAATTACCAAAA
*** *
79128707 TACCCTTGGTTTA-AAAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
79128733 TACCC
1 TACCC
79128738 CTGGTTTGTA
Statistics
Matches: 248, Mismatches: 51, Indels: 5
0.82 0.17 0.02
Matches are distributed among these distances:
26 17 0.07
27 231 0.93
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCAAAA
Found at i:79128665 original size:54 final size:54
Alignment explanation
Indices: 79128399--79128648 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
79128389 CGACTTGTAA
* *
79128399 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
79128453 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
79128507 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
79128561 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
79128615 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
79128649 AAAATACCCT
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:79128667 original size:81 final size:81
Alignment explanation
Indices: 79128399--79128649 Score: 371
Period size: 81 Copynumber: 3.1 Consensus size: 81
79128389 CGACTTGTAA
79128399 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
79128464 TACCCTCGATTTACAG
66 TACCCTCAATTTACAG
* * *
79128480 AATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTACTGT
1 AATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
* *
79128543 TTTCCCCTCAGTTTACAG
64 TTTACCCTCAATTTACAG
* * * *
79128561 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
79128626 TACCTTCAATTTACAG
66 TACCCTCAATTTACAG
79128642 AATTACCA
1 AATTACCA
79128650 AAATACCCTT
Statistics
Matches: 149, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
80 2 0.01
81 145 0.97
82 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCCTCAATTTACAG
Found at i:79128739 original size:27 final size:26
Alignment explanation
Indices: 79128642--79128794 Score: 180
Period size: 27 Copynumber: 5.7 Consensus size: 26
79128632 CAATTTACAG
79128642 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTA-AA
* * * *
79128669 AATCACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTT-AAA
*
79128696 AATTACTAAAATACCCTTGGTTTAAA
1 AATTACCAAAATACCCTTGGTTTAAA
* *
79128722 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTT-AAA
* *
79128749 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTA-AA
*
79128776 AATTACCGAAATACCCTTG
1 AATTACCAAAATACCCTTG
79128795 TAGGGTAGAA
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
26 23 0.22
27 81 0.78
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (26 bp):
AATTACCAAAATACCCTTGGTTTAAA
Found at i:79128744 original size:80 final size:80
Alignment explanation
Indices: 79128642--79128794 Score: 225
Period size: 80 Copynumber: 1.9 Consensus size: 80
79128632 CAATTTACAG
* * *
79128642 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTACCAAAA
79128707 TACCCTTGGTTTAAA
66 TACCCTTGGTTTAAA
* * * * * *
79128722 AATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCGAAA
1 AATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTACCAAAA
79128787 TACCCTTG
66 TACCCTTG
79128795 TAGGGTAGAA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (80 bp):
AATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATTACCAAAA
TACCCTTGGTTTAAA
Found at i:79128808 original size:54 final size:54
Alignment explanation
Indices: 79128642--79128791 Score: 248
Period size: 53 Copynumber: 2.8 Consensus size: 54
79128632 CAATTTACAG
* *
79128642 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
*
79128696 AATTACTAAAATACCCTTGGTTTA-AAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
79128749 AATTACTAAAATACCCTTTGTTTATAAAATTACCGAAATACCC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC
79128792 TTGTAGGGTA
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 50 0.56
54 40 0.44
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:79132270 original size:27 final size:27
Alignment explanation
Indices: 79132254--79132504 Score: 312
Period size: 27 Copynumber: 9.3 Consensus size: 27
79132244 CGACTTGTAA
79132254 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
79132281 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
**
79132308 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
79132335 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
79132362 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
** *
79132389 AATTACTGTTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
79132416 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
*
79132443 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
79132470 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
79132497 AATTACCA
1 AATTACCA
79132505 AAATACCCTT
Statistics
Matches: 199, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.02
27 191 0.96
28 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:79132511 original size:27 final size:27
Alignment explanation
Indices: 79132265--79132593 Score: 102
Period size: 27 Copynumber: 12.2 Consensus size: 27
79132255 ATTACCATTT
* ***
79132265 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* *****
79132292 TACCCTCAGTTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
79132319 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ***
79132346 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * *****
79132373 TATCCTCGATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * * ***
79132400 TCCCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ****
79132427 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
79132454 TACCCTCAGTTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
*
79132481 TACCTTCAATTTACAGAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
*** * * *
79132508 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
* ** * *
79132535 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AATTTACAGAATTACCAAAA
*** *
79132562 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
79132589 TACCC
1 TACCC
79132594 CTGGTTTGTA
Statistics
Matches: 248, Mismatches: 52, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
27 248 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCAAAA
Found at i:79132520 original size:54 final size:54
Alignment explanation
Indices: 79132254--79132503 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
79132244 CGACTTGTAA
* *
79132254 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
79132308 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
79132362 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
79132416 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
79132470 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
79132504 AAAATACCCT
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:79132522 original size:81 final size:81
Alignment explanation
Indices: 79132254--79132504 Score: 371
Period size: 81 Copynumber: 3.1 Consensus size: 81
79132244 CGACTTGTAA
79132254 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
79132319 TACCCTCGATTTACAG
66 TACCCTCAATTTACAG
* * *
79132335 AATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTACTGT
1 AATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
* *
79132398 TTTCCCCTCAGTTTACAG
64 TTTACCCTCAATTTACAG
* * * *
79132416 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
79132481 TACCTTCAATTTACAG
66 TACCCTCAATTTACAG
79132497 AATTACCA
1 AATTACCA
79132505 AAATACCCTT
Statistics
Matches: 149, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
80 2 0.01
81 145 0.97
82 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCCTCAATTTACAG
Found at i:79132598 original size:27 final size:27
Alignment explanation
Indices: 79132497--79132650 Score: 209
Period size: 27 Copynumber: 5.7 Consensus size: 27
79132487 CAATTTACAG
79132497 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * * *
79132524 AATCACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
79132551 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
79132578 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
79132605 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
79132632 AATTACCGAAATACCCTTG
1 AATTACCAAAATACCCTTG
79132651 TAGGGTAGAA
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:79132650 original size:81 final size:81
Alignment explanation
Indices: 79132490--79132650 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 81
79132480 TTACCTTCAA
* * *
79132490 TTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
79132555 ACTAAAATACCCTTGG
66 ACCAAAATACCCTTGG
* * * * *
79132571 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
79132636 ACCGAAATACCCTTG
66 ACCAAAATACCCTTG
79132651 TAGGGTAGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
ACCAAAATACCCTTGG
Found at i:79132664 original size:54 final size:54
Alignment explanation
Indices: 79132497--79132647 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
79132487 CAATTTACAG
* *
79132497 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
79132551 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
79132605 AATTACTAAAATACCCTTTGTTTATAAAATTACCGAAATACCC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC
79132648 TTGTAGGGTA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:79135257 original size:22 final size:22
Alignment explanation
Indices: 79135195--79135263 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
79135185 AGAGGACAGT
* * *
79135195 TTTCAATTCTGGTTTGGGCCGG
1 TTTCATTTCTGGTTTAGGCTGG
* **
79135217 TTTC-TTTTTCATTTCAGGCTGG
1 TTTCATTTCTGGTTT-AGGCTGG
*
79135239 TTTCATTTCTGGTTTAGGCTAG
1 TTTCATTTCTGGTTTAGGCTGG
79135261 TTT
1 TTT
79135264 TTTTTGGAAC
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
21 6 0.17
22 22 0.63
23 7 0.20
ACGTcount: A:0.10, C:0.16, G:0.23, T:0.51
Consensus pattern (22 bp):
TTTCATTTCTGGTTTAGGCTGG
Found at i:79135549 original size:20 final size:22
Alignment explanation
Indices: 79135510--79135549 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
79135500 TACAAAAAAA
*
79135510 TATCGAATACCTTTTTGTTTGG
1 TATCGAATACCTTGTTGTTTGG
79135532 TATCG-ATA-CTTGTTGTTT
1 TATCGAATACCTTGTTGTTT
79135550 CAAGTGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.17, C:0.12, G:0.17, T:0.53
Consensus pattern (22 bp):
TATCGAATACCTTGTTGTTTGG
Found at i:79137263 original size:19 final size:18
Alignment explanation
Indices: 79137220--79137263 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
79137210 TATTTTGTAC
79137220 AATATTTTTCTATACAAA
1 AATATTTTTCTATACAAA
79137238 AATATTTTTCTATACAAA
1 AATATTTTTCTATACAAA
79137256 AATCATTT
1 AAT-ATTT
79137264 CCCTTTTATC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.45
Consensus pattern (18 bp):
AATATTTTTCTATACAAA
Found at i:79142541 original size:21 final size:21
Alignment explanation
Indices: 79142517--79142580 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
79142507 ATGATTTCAA
* *
79142517 TCTCAATTATTGTTTTAGGTG
1 TCTCAAATATTGTTATAGGTG
* *
79142538 TCTCAAATGTTGTTATAGGTA
1 TCTCAAATATTGTTATAGGTG
* * * *
79142559 TTTTAAATGTAGTTATAGGTG
1 TCTCAAATATTGTTATAGGTG
79142580 T
1 T
79142581 ATAATAACCA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.25, C:0.06, G:0.20, T:0.48
Consensus pattern (21 bp):
TCTCAAATATTGTTATAGGTG
Found at i:79146704 original size:17 final size:17
Alignment explanation
Indices: 79146679--79146742 Score: 51
Period size: 17 Copynumber: 3.7 Consensus size: 17
79146669 AAGATTTAAT
79146679 ATAAT-TAAATAATACA
1 ATAATATAAATAATACA
**
79146695 ATAATATAAATTGTACA
1 ATAATATAAATAATACA
* *
79146712 A-AATGTGAAATTTAATTCA
1 ATAATAT-AAA--TAATACA
79146731 ATAATATAAATA
1 ATAATATAAATA
79146743 GTAGATATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
16 9 0.25
17 15 0.42
19 8 0.22
20 4 0.11
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (17 bp):
ATAATATAAATAATACA
Found at i:79147117 original size:11 final size:12
Alignment explanation
Indices: 79147095--79147127 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
79147085 CGGCCCTCCC
79147095 ATATTAATTTTT
1 ATATTAATTTTT
79147107 ATATT-ATTTTT
1 ATATTAATTTTT
*
79147118 ATATAAATTT
1 ATATTAATTT
79147128 AAAAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:79147152 original size:18 final size:18
Alignment explanation
Indices: 79147129--79147168 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
79147119 TATAAATTTA
*
79147129 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
79147147 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
79147165 AAAA
1 AAAA
79147169 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:79147288 original size:30 final size:30
Alignment explanation
Indices: 79147252--79147310 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
79147242 CTTAACAAAC
79147252 AAATGTCTCTAAAATAATAACAAAATTAAA
1 AAATGTCTCTAAAATAATAACAAAATTAAA
*
79147282 AAATGTCTTTAAAATAATAACAAAATTAA
1 AAATGTCTCTAAAATAATAACAAAATTAA
79147311 CAATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.29
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAACAAAATTAAA
Found at i:79148136 original size:17 final size:16
Alignment explanation
Indices: 79148109--79148164 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 16
79148099 TAGTTTTACA
79148109 TAATATTTTATATAATAT
1 TAATATTTTATA-AA-AT
79148127 TAAT-TTTTATAAAAT
1 TAATATTTTATAAAAT
79148142 TAATA--TTATAAAAT
1 TAATATTTTATAAAAT
*
79148156 TAAAATTTT
1 TAATATTTT
79148165 GTAATTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 13 0.38
15 6 0.18
16 4 0.12
17 7 0.21
18 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATTTTATAAAAT
Found at i:79149389 original size:22 final size:22
Alignment explanation
Indices: 79149363--79149436 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
79149353 TTGGCAGACT
79149363 ATGTCTCAAGACAAACAGACAC
1 ATGTCTCAAGACAAACAGACAC
** ** *
79149385 ATGTCTTGAGACATTGGGCAGAC-T
1 ATGTCTCAAGACA---AACAGACAC
79149409 ATGTCTCAAGACAAACAGACAC
1 ATGTCTCAAGACAAACAGACAC
79149431 ATGTCT
1 ATGTCT
79149437 TGAGACATTG
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
21 5 0.13
22 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (22 bp):
ATGTCTCAAGACAAACAGACAC
Found at i:79149420 original size:24 final size:21
Alignment explanation
Indices: 79149355--79149421 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 21
79149345 TATAGCCGTT
79149355 GGCAGACTATGTCTCAAGACA
1 GGCAGACTATGTCTCAAGACA
** * **
79149376 AACAGACACATGTCTTGAGACA
1 GGCAGAC-TATGTCTCAAGACA
79149398 TTGGGCAGACTATGTCTCAAGACA
1 ---GGCAGACTATGTCTCAAGACA
79149422 AACAGACACA
Statistics
Matches: 32, Mismatches: 10, Indels: 5
0.68 0.21 0.11
Matches are distributed among these distances:
21 5 0.16
22 11 0.34
24 11 0.34
25 5 0.16
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (21 bp):
GGCAGACTATGTCTCAAGACA
Found at i:79149422 original size:46 final size:46
Alignment explanation
Indices: 79149355--79149449 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
79149345 TATAGCCGTT
79149355 GGCAGACTATGTCTCAAGACAAACAGACACATGTCTTGAGACATTG
1 GGCAGACTATGTCTCAAGACAAACAGACACATGTCTTGAGACATTG
79149401 GGCAGACTATGTCTCAAGACAAACAGACACATGTCTTGAGACATTG
1 GGCAGACTATGTCTCAAGACAAACAGACACATGTCTTGAGACATTG
79149447 GGC
1 GGC
79149450 CATTGTCTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (46 bp):
GGCAGACTATGTCTCAAGACAAACAGACACATGTCTTGAGACATTG
Found at i:79150080 original size:15 final size:16
Alignment explanation
Indices: 79150054--79150083 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
79150044 TGACATTATG
79150054 AAAATCACGTATTTAC
1 AAAATCACGTATTTAC
79150070 AAAAT-ACGTATTTA
1 AAAATCACGTATTTA
79150084 GAATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (16 bp):
AAAATCACGTATTTAC
Found at i:79150165 original size:18 final size:18
Alignment explanation
Indices: 79150130--79150168 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
79150120 TAATCACACA
79150130 TATTTTGTAGAAACCACG
1 TATTTTGTAGAAACCACG
*
79150148 TATTTATGTA-AAATCACG
1 TATTT-TGTAGAAACCACG
79150166 TAT
1 TAT
79150169 GTATATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (18 bp):
TATTTTGTAGAAACCACG
Found at i:79157279 original size:40 final size:40
Alignment explanation
Indices: 79157231--79157356 Score: 184
Period size: 40 Copynumber: 3.2 Consensus size: 40
79157221 GGACTAAGAT
79157231 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
79157271 CCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
79157311 CCGAAGGCATTTGT-CTGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCT-AGTTACTATATCCGGGCTAAGTC
*
79157350 TCGAAGG
1 CCGAAGG
79157357 TACTTGGGTT
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.19
40 63 0.81
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:79159839 original size:46 final size:46
Alignment explanation
Indices: 79159789--79159915 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 46
79159779 AACCTGTATG
* * *
79159789 CTCGAGTCCGCAACATATGTAAGAGCTCAAAACCTATTCCCATATT
1 CTCGAGTCCGCAACATATGCAAGAGCTCAGAACCTATTCACATATT
* * * **
79159835 CTCGAGTTCACAACATATGCAGGAGCTCAGAACCTATTCATGTATT
1 CTCGAGTCCGCAACATATGCAAGAGCTCAGAACCTATTCACATATT
* * *
79159881 CTTGAGTCTGCAACATATGCAAAAGCTCAGAACCT
1 CTCGAGTCCGCAACATATGCAAGAGCTCAGAACCT
79159916 GGGCAAAACT
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (46 bp):
CTCGAGTCCGCAACATATGCAAGAGCTCAGAACCTATTCACATATT
Found at i:79159894 original size:92 final size:92
Alignment explanation
Indices: 79159732--79159915 Score: 235
Period size: 92 Copynumber: 2.0 Consensus size: 92
79159722 AGGGCTTAAC
* ** *
79159732 ATTCCTATATTCTCGAGTCTACAACATATGCAGGAGCTTGGAAACTAAACCTGTATGCTCGAGTC
1 ATTCCCATATTCTCGAGTCTACAACATATGCAGGAGCTCAGAAACTAAACATGTATGCTCGAGTC
* *
79159797 CGCAACATATGTAAGAGCTCAAAACCT
66 CGCAACATATGCAAAAGCTCAAAACCT
* ** * *
79159824 ATTCCCATATTCTCGAGT-TCACAACATATGCAGGAGCTCAGAACCTATTCATGTATTCTTGAGT
1 ATTCCCATATTCTCGAGTCT-ACAACATATGCAGGAGCTCAGAAACTAAACATGTATGCTCGAGT
* *
79159888 CTGCAACATATGCAAAAGCTCAGAACCT
65 CCGCAACATATGCAAAAGCTCAAAACCT
79159916 GGGCAAAACT
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
91 1 0.01
92 77 0.99
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (92 bp):
ATTCCCATATTCTCGAGTCTACAACATATGCAGGAGCTCAGAAACTAAACATGTATGCTCGAGTC
CGCAACATATGCAAAAGCTCAAAACCT
Found at i:79165408 original size:39 final size:39
Alignment explanation
Indices: 79165351--79165566 Score: 274
Period size: 39 Copynumber: 5.5 Consensus size: 39
79165341 TATTTGAGAT
* *
79165351 TTATATCCGGACTAAAAGTCCGCAGGCTATATGCGGGAA
1 TTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGGAA
* **
79165390 TTATATCCGGACTTAAAGTCCATAGGCTATATGCAAGAA
1 TTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGGAA
* * *
79165429 TTATATCCAGACTTAAAGTCCGTAAGCTATATGCGAGAA
1 TTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGGAA
* *
79165468 TTATATCCGGACTTAAAGTCCGCAGGCTATATGCAGGAA
1 TTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGGAA
* **
79165507 TTATATCCGAACTT-AAGATCCGTAGGCTACGTGCTGGGAA
1 TTATATCCGGACTTAAAG-TCCGTAGGCTATATGC-GGGAA
*
79165547 -TATATCCGGGCTTAAAGTCC
1 TTATATCCGGACTTAAAGTCC
79165567 CGAAGGCTTT
Statistics
Matches: 153, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
38 3 0.02
39 143 0.93
40 7 0.05
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (39 bp):
TTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGGAA
Found at i:79167841 original size:48 final size:48
Alignment explanation
Indices: 79167708--79167843 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 48
79167698 CATTAGGGTT
* * *
79167708 ATATGAGATCCAATGTAAGACCATGTCTGGGACATGGCATTGGTATTG
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* * * *
79167756 ATGTGAGATCCCATGTAAGACCATATTTGGGATATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* **** *
79167804 ATATGTGATTTTGTGTAAGACCATGTCTAGGACATGGCAT
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCAT
79167844 CAATATGAGA
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
Found at i:79174398 original size:29 final size:29
Alignment explanation
Indices: 79174356--79174422 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
79174346 ACATGGCTTG
79174356 GAAT-TGATTCGGGCCAAATAGGCCATAT
1 GAATGTGATTCGGGCCAAATAGGCCATAT
* * *
79174384 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTCGGGCCAAATAGGCCATAT
*
79174413 GAATGAGATT
1 GAATGTGATT
79174423 GGGACTAGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 4 0.12
29 30 0.88
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.28
Consensus pattern (29 bp):
GAATGTGATTCGGGCCAAATAGGCCATAT
Found at i:79174434 original size:28 final size:29
Alignment explanation
Indices: 79174376--79174440 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 29
79174366 GGGCCAAATA
* *
79174376 GGCCATATGAATGTGATTTGGGCCTAATG
1 GGCCATATGAATGAGATTTGGGACTAATG
*
79174405 GGCCATATGAATGAGA-TTGGGACTAGTG
1 GGCCATATGAATGAGATTTGGGACTAATG
79174433 GGCCATAT
1 GGCCATAT
79174441 ACATGTATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 18 0.55
29 15 0.45
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
GGCCATATGAATGAGATTTGGGACTAATG
Found at i:79175836 original size:46 final size:46
Alignment explanation
Indices: 79175781--79175961 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
79175771 TAGGATGGTT
79175781 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
79175827 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
79175873 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
79175920 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79175962 CGGGTTACAT
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:79175942 original size:93 final size:93
Alignment explanation
Indices: 79175783--79175953 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
79175773 GGATGGTTGA
* *
79175783 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79175848 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
79175876 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79175941 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79175954 ACTTATGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79178929 original size:15 final size:15
Alignment explanation
Indices: 79178909--79178977 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
79178899 GTATCTTGGG
79178909 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
79178924 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
79178939 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
79178954 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
79178969 TTTCTTTAT
1 TTTCTTTAT
79178978 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:79178978 original size:30 final size:30
Alignment explanation
Indices: 79178900--79178987 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
79178890 CATAGTATCG
* * * *
79178900 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
79178930 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
79178960 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
79178988 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:79183064 original size:40 final size:40
Alignment explanation
Indices: 79182998--79183164 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79182988 AAATTGAATG
* * *
79182998 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79183037 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
79183077 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79183117 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79183157 ATATCCGG
1 ATATCCGG
79183165 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79190538 original size:42 final size:42
Alignment explanation
Indices: 79190455--79190615 Score: 211
Period size: 42 Copynumber: 3.8 Consensus size: 42
79190445 AGGGTTACTA
*
79190455 AGACTACGTGTAAGACCATA-TTGGGATATGGCATC-ACTATG
1 AGACTACTTGTAAGACCATATTTGGGATATGGCATCGA-TATG
*
79190496 AGACTACTTGTAAGACCATATTTGGGATATGACATCGATATG
1 AGACTACTTGTAAGACCATATTTGGGATATGGCATCGATATG
* * *
79190538 AGACT-TTGTGTAAGACCATAGTTGGGCTATTGGCATCGATATG
1 AGACTACT-TGTAAGACCATATTTGGGATA-TGGCATCGATATG
* *
79190581 AGATTACATGTAAGACCATATTTGGGATATGGCAT
1 AGACTACTTGTAAGACCATATTTGGGATATGGCAT
79190616 TGGTATGGTA
Statistics
Matches: 104, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
41 20 0.19
42 48 0.46
43 36 0.35
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.30
Consensus pattern (42 bp):
AGACTACTTGTAAGACCATATTTGGGATATGGCATCGATATG
Found at i:79190633 original size:85 final size:83
Alignment explanation
Indices: 79190462--79190634 Score: 224
Period size: 85 Copynumber: 2.1 Consensus size: 83
79190452 CTAAGACTAC
*
79190462 GTGTAAGACCATATTGGGATATGGCATCACTATGAGACTACTTGTAAGACCATATTTGGGATATG
1 GTGTAAGACCATATTGGGATATGGCATCACTATGAGACTACATGTAAGACCATATTTGGGATATG
**
79190527 ACATCGATATGAGACTTT
66 ACATCGATATGAGACCGT
* *
79190545 GTGTAAGACCATAGTTGGGCTATTGGCATCGA-TATGAGATTACATGTAAGACCATATTTGGGAT
1 GTGTAAGACCATA-TTGGGATA-TGGCATC-ACTATGAGACTACATGTAAGACCATATTTGGGAT
* * *
79190609 ATGGCATTGGTATG-GTACCGT
63 ATGACATCGATATGAG-ACCGT
79190630 GTGTA
1 GTGTA
79190635 CAAGATTCCT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
83 13 0.17
84 8 0.10
85 56 0.72
86 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (83 bp):
GTGTAAGACCATATTGGGATATGGCATCACTATGAGACTACATGTAAGACCATATTTGGGATATG
ACATCGATATGAGACCGT
Found at i:79199453 original size:42 final size:41
Alignment explanation
Indices: 79199394--79199555 Score: 162
Period size: 42 Copynumber: 3.9 Consensus size: 41
79199384 GGGGTTACTA
79199394 AGACTACATGTAAGACCATATCTGGGATATGGCATCACTATG
1 AGACTACATGTAAGACCATATCTGGGATATGGCATCA-TATG
* * ** *
79199436 AGACTACGTGTAAGACCATATCTAGGATATGATATCAATGTG
1 AGACTACATGTAAGACCATATCTGGGATATGGCATC-ATATG
* * * * * * *
79199478 AGACTTCGTGTAATATCATAGCTGGGCTATTGGCATCGATACG
1 AGACTACATGTAAGACCATATCTGGGATA-TGGCATC-ATATG
* *
79199521 AGATTACATGTAAGACCATGTCTGGGATATGGCAT
1 AGACTACATGTAAGACCATATCTGGGATATGGCAT
79199556 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
42 64 0.68
43 30 0.32
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (41 bp):
AGACTACATGTAAGACCATATCTGGGATATGGCATCATATG
Found at i:79201432 original size:40 final size:41
Alignment explanation
Indices: 79201287--79201472 Score: 141
Period size: 40 Copynumber: 4.6 Consensus size: 41
79201277 ACTTGATATC
* *
79201287 TCGCACACTTAGTGCCAATACATAGCCGAAGCTATTAT--AA
1 TCGCACACTAAGTGCC-ATATATAGCCGAAGCTATTATCGAA
* * * * * * **
79201327 TTTTGCACGCCAAGTGCCTTATATAGCTGAAGCTA-TCTCGGTC
1 --TCGCACACTAAGTGCCATATATAGCCGAAGCTATTATC-GAA
*
79201370 TCACACACTAAGTGCC-TAATATAGCCGAAGCTATT-TCGAA
1 TCGCACACTAAGTGCCAT-ATATAGCCGAAGCTATTATCGAA
* * *
79201410 TCGCACACTAAGTGCCATATATAGCCGAAGCT-TTCTTGAG
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTATCGAA
* *
79201450 TTGCACACTAAGTGCCACATATA
1 TCGCACACTAAGTGCCATATATA
79201473 TATATCTGAA
Statistics
Matches: 115, Mismatches: 22, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
39 2 0.02
40 57 0.50
41 43 0.37
42 13 0.11
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (41 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATTATCGAA
Found at i:79204978 original size:42 final size:43
Alignment explanation
Indices: 79204911--79204991 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
79204901 TTACATGTGA
79204911 TCAAATATCGATGCCACTATCCCAGACAGGGCCTTACACGAAG
1 TCAAATATCGATGCCACTATCCCAGACAGGGCCTTACACGAAG
* * *
79204954 TCAAATA-CGATGCCGA-TGTCCCAGACATGGTCTTACAC
1 TCAAATATCGATGCC-ACTATCCCAGACAGGGCCTTACAC
79204992 ATAAATCATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 26 0.76
43 8 0.24
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (43 bp):
TCAAATATCGATGCCACTATCCCAGACAGGGCCTTACACGAAG
Found at i:79207440 original size:29 final size:29
Alignment explanation
Indices: 79207408--79207514 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
79207398 ATACCCTCCG
** *
79207408 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
79207437 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
79207466 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
79207495 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
79207515 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:79215362 original size:29 final size:29
Alignment explanation
Indices: 79215330--79215435 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 29
79215320 ATACCCTCCG
** *
79215330 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
79215359 AGCTTGCACACATAGTGTCATA-TTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
79215387 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
79215416 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
79215436 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
28 23 0.37
29 40 0.63
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:79215394 original size:28 final size:28
Alignment explanation
Indices: 79215343--79215435 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 28
79215333 TCGCACACCC
* * *
79215343 AGTGCCGTATTTTTCCAGCTTGCACACAT
1 AGTGCCATA-TTTTCCAGCATGCACACTT
*
79215372 AGTGTCATATTTTCCAGCATGCACACTT
1 AGTGCCATATTTTCCAGCATGCACACTT
* *
79215400 AGTGCCTTATATTTCCAGCACGCACACTT
1 AGTGCCATAT-TTTCCAGCATGCACACTT
79215429 AGTGCCA
1 AGTGCCA
79215436 ATCTCGTCAC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 25 0.45
29 30 0.55
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (28 bp):
AGTGCCATATTTTCCAGCATGCACACTT
Found at i:79223652 original size:42 final size:43
Alignment explanation
Indices: 79223550--79223711 Score: 143
Period size: 43 Copynumber: 3.8 Consensus size: 43
79223540 AGCTCATACA
* * * *
79223550 ATGCCAACGTCCTAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCTAGACAG-GGTCTTACACGAAATCAAATATCG
* * *
79223593 ATGCCACTGTCCAAGACAGGGTCTTACGCGAAATCAAATA-CG
1 ATGCCAATGTCCTAGACAGGGTCTTACACGAAATCAAATATCG
* * * *
79223635 ATGCTAATGTCCTAGACATGGTCTTACACGTAAATTATAA-GTCG
1 ATGCCAATGTCCTAGACAGGGTCTTACACG-AAATCA-AATATCG
* *
79223679 ATGCCAATGTCCCAGA-TGTGGTCTTACACGAAA
1 ATGCCAATGTCCTAGACAG-GGTCTTACACGAAA
79223712 AAACATATAG
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 26 0.27
43 40 0.42
44 30 0.31
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:79227514 original size:53 final size:53
Alignment explanation
Indices: 79227335--79227538 Score: 160
Period size: 53 Copynumber: 3.8 Consensus size: 53
79227325 AGGGTTTAAG
* * * * * * * *
79227335 GATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * *
79227389 GAAATCATGTAAGACCATGTCAAGAAATGGCATTGATAAACTAAT-ATAAGGCAAA
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGT-AAGT--TCATAAGGCAAA
* * * * * *
79227444 GATCCCATGTAAGACCATG-CTAAGGCATGGCAATGGTGAGTTCATAAGGTAAG
1 GATACCACGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCATAAGGCAAA
79227497 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
79227539 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 26, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
52 1 0.01
53 44 0.37
54 34 0.29
55 38 0.32
56 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:79231475 original size:39 final size:39
Alignment explanation
Indices: 79231344--79231534 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
79231334 GGATATAACG
* ** **
79231344 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
79231384 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
79231424 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
79231462 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
79231502 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
79231535 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:79231479 original size:78 final size:80
Alignment explanation
Indices: 79231384--79231534 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
79231374 GGTTATAGCG
* * * *
79231384 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
79231446 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
79231462 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
79231527 AGCCCGGA
66 AGCCCGGA
79231535 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:79240064 original size:39 final size:39
Alignment explanation
Indices: 79239933--79240123 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
79239923 GGATATAACG
* ** **
79239933 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
79239973 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
79240013 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
79240051 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
79240091 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
79240124 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:79240068 original size:78 final size:80
Alignment explanation
Indices: 79239973--79240123 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
79239963 GGTTATAGCG
* * * *
79239973 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
79240035 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
79240051 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
79240116 AGCCCGGA
66 AGCCCGGA
79240124 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:79243198 original size:37 final size:37
Alignment explanation
Indices: 79243155--79243227 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
79243145 AAATGAGAAT
* *
79243155 CAAAATCAAAATCAGAATTAGGTGATAGAATCAAAAC
1 CAAAATCAAAATCAGAATTAGGTAACAGAATCAAAAC
*
79243192 CAAAATCAGAATCAGAATTAGGTAACAGAATCAAAA
1 CAAAATCAAAATCAGAATTAGGTAACAGAATCAAAA
79243228 TCAGTATCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.18
Consensus pattern (37 bp):
CAAAATCAAAATCAGAATTAGGTAACAGAATCAAAAC
Found at i:79243204 original size:6 final size:6
Alignment explanation
Indices: 79243181--79243346 Score: 110
Period size: 6 Copynumber: 26.8 Consensus size: 6
79243171 ATTAGGTGAT
* * * * *
79243181 AGAATC AAAACC AAAATC AGAATC AGAATT AGGTAA-C AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
79243230 AGTATC AAGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC AGAATC
1 AGAATC -AG-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
79243280 AGAA-C TAGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC AAGTAA-C
1 AGAATC -AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC -AG-AATC
79243330 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
79243347 GTGAATGAAA
Statistics
Matches: 127, Mismatches: 16, Indels: 34
0.72 0.09 0.19
Matches are distributed among these distances:
5 11 0.09
6 95 0.75
7 14 0.11
8 7 0.06
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:79243224 original size:25 final size:25
Alignment explanation
Indices: 79243195--79243283 Score: 133
Period size: 25 Copynumber: 3.6 Consensus size: 25
79243185 TCAAAACCAA
*
79243195 AATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
* * *
79243220 AATCAAAATCAGTATCAAGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
79243245 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
79243270 AATCAGAATCAGAA
1 AATCAGAATCAGAA
79243284 CTAGAATCAG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:79243227 original size:31 final size:31
Alignment explanation
Indices: 79243150--79243323 Score: 98
Period size: 31 Copynumber: 5.6 Consensus size: 31
79243140 AATCAAAATG
*
79243150 AGAATCAAAATCAAAATCAGAATTAGGTGATAGAATC
1 AGAATCAAAATCAGAATCAGAATTA-G-G-T--AA-C
* *
79243187 AAAACCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAAAATCAGAATCAGAATTAGGTAAC
*
79243218 AGAATCAAAATCAGTATC---A--A-GTAAC
1 AGAATCAAAATCAGAATCAGAATTAGGTAAC
* * *
79243243 AGAATCAGAATCAGTATCAGGTAA-CA-G-AATC
1 AGAATCAAAATCAGAATCA-G-AATTAGGTAA-C
*
79243274 AGAATCAGAA-CTAGAATCAGAATTAGGTAAC
1 AGAATCAAAATC-AGAATCAGAATTAGGTAAC
* *
79243305 AGAATCAGAATCAGTATCA
1 AGAATCAAAATCAGAATCA
79243324 AGTAACAGAA
Statistics
Matches: 115, Mismatches: 10, Indels: 30
0.74 0.06 0.19
Matches are distributed among these distances:
25 22 0.19
26 1 0.01
28 1 0.01
29 2 0.02
30 6 0.05
31 53 0.46
32 5 0.04
34 1 0.01
35 1 0.01
36 1 0.01
37 22 0.19
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATTAGGTAAC
Found at i:79243273 original size:87 final size:87
Alignment explanation
Indices: 79243158--79243346 Score: 281
Period size: 87 Copynumber: 2.2 Consensus size: 87
79243148 TGAGAATCAA
* * * *
79243158 AATCAAAATCAGAATTAGGTGATAGAATCAAAACCAAAA-TCAGAATCAGAATTAGGTAACAGAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAAAACCAAAACT-AGAATCAGAATTAGGTAACAGAA
79243222 TCAAAATCAGTATCAAGTAACAG
65 TCAAAATCAGTATCAAGTAACAG
* * * *
79243245 AATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACTAGAATCAGAATTAGGTAACAGAAT
1 AATCAGAATCAGAATCAGGTAACAGAATCAAAACCAAAACTAGAATCAGAATTAGGTAACAGAAT
*
79243310 CAGAATCAGTATCAAGTAACAG
66 CAAAATCAGTATCAAGTAACAG
79243332 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
79243347 GTGAATGAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 90 0.99
88 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (87 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAAAACCAAAACTAGAATCAGAATTAGGTAACAGAAT
CAAAATCAGTATCAAGTAACAG
Found at i:79243314 original size:25 final size:25
Alignment explanation
Indices: 79243286--79243346 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
79243276 AATCAGAACT
* *
79243286 AGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAAGTAACAGAATC
*
79243311 AGAATCAGTATCAAGTAACAGAATC
1 AGAATCAGAATCAAGTAACAGAATC
79243336 AGAATCAGAAT
1 AGAATCAGAAT
79243347 GTGAATGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAAGTAACAGAATC
Found at i:79243342 original size:19 final size:19
Alignment explanation
Indices: 79243248--79243318 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
79243238 GTAACAGAAT
*
79243248 CAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGGTAA
79243267 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
79243284 CTAGAATCAGAATTAGGTAA
1 C-AGAATCAGAATCAGGTAA
79243304 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
79243319 TATCAAGTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
17 3 0.07
18 13 0.28
19 27 0.59
20 3 0.07
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:79243893 original size:27 final size:26
Alignment explanation
Indices: 79243862--79243924 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 26
79243852 GGGTAAAATG
*
79243862 GTAATTTTACCCCACAAGGGTATCTC
1 GTAATTTTACCCCACAAGGGTATCTA
* * * *
79243888 GATAATTCTACCCTACAGGGGTATTTA
1 G-TAATTTTACCCCACAAGGGTATCTA
79243915 GTAATTTTAC
1 GTAATTTTAC
79243925 AAACTAGGGG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.35
Consensus pattern (26 bp):
GTAATTTTACCCCACAAGGGTATCTA
Found at i:79243951 original size:27 final size:27
Alignment explanation
Indices: 79243904--79244029 Score: 191
Period size: 27 Copynumber: 4.7 Consensus size: 27
79243894 TCTACCCTAC
*
79243904 AGGGGTA-TTTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
79243930 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
79243957 AGGGGTATTTTGGTGATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
79243984 AAGGGTATTTTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
79244011 AGGGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTT
79244030 GGTAAATTAA
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 7 0.08
27 81 0.92
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:79245997 original size:41 final size:40
Alignment explanation
Indices: 79245944--79246112 Score: 152
Period size: 41 Copynumber: 4.2 Consensus size: 40
79245934 AGTCTGACTC
*
79245944 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
79245983 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
79246023 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
79246068 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTC-GA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
79246106 TTTAGAC
1 -TTAGAC
79246113 CCCGATTAGC
Statistics
Matches: 106, Mismatches: 10, Indels: 27
0.74 0.07 0.19
Matches are distributed among these distances:
38 1 0.01
39 8 0.08
40 16 0.15
41 48 0.45
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:79254341 original size:41 final size:40
Alignment explanation
Indices: 79254288--79254457 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
79254278 AGTCCGACTC
*
79254288 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
79254327 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
79254367 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
79254412 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
79254451 TTTAGAC
1 -TTAGAC
79254458 CCGATTAGCA
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:79255588 original size:37 final size:39
Alignment explanation
Indices: 79255521--79255631 Score: 154
Period size: 37 Copynumber: 2.9 Consensus size: 39
79255511 GTGCGAATTG
79255521 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
79255560 TGATATCCGGGCT-AG-CCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* **
79255597 TGATATCCGGGTTAAGTCCCGAAGGCGTTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
79255632 GTTACCATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
37 32 0.50
38 4 0.06
39 13 0.20
40 15 0.23
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:79262596 original size:40 final size:39
Alignment explanation
Indices: 79262475--79262628 Score: 182
Period size: 39 Copynumber: 3.9 Consensus size: 39
79262465 TGTGAATGAA
* *
79262475 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
79262514 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
79262553 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
79262593 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
79262629 TGTTTGAACG
Statistics
Matches: 99, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 60 0.61
40 39 0.39
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:79262614 original size:79 final size:79
Alignment explanation
Indices: 79262475--79262628 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
79262465 TGTGAATGAA
** *
79262475 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
79262540 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * ** * *
79262553 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
79262618 TGTCCCGAAGG
65 AGTCCCGAAGG
79262629 TGTTTGAACG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 25 0.39
79 31 0.48
80 8 0.12
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:79266935 original size:22 final size:21
Alignment explanation
Indices: 79266893--79266935 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
79266883 AAAACAGACT
**
79266893 TTTAGCGGCGTTTTTTTTGCC
1 TTTAGCGGCGTTTTTAGTGCC
*
79266914 TTTAGCTGCGTTTTTAAGTGCC
1 TTTAGCGGCGTTTTT-AGTGCC
79266936 ACTAATACTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.09, C:0.19, G:0.23, T:0.49
Consensus pattern (21 bp):
TTTAGCGGCGTTTTTAGTGCC
Found at i:79267127 original size:43 final size:43
Alignment explanation
Indices: 79267024--79267208 Score: 291
Period size: 43 Copynumber: 4.3 Consensus size: 43
79267014 TTTTTTTGGA
79267024 AAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTAT-
1 AAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTATG
* * * *
79267066 AAAAACACCTCTAAAGACCAAGACTTTTAGCGGCACTTTTATG
1 AAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTATG
* *
79267109 AAAAACACCGCTAAAGACCAGGACTTTTAGCGGTGCTTTTATG
1 AAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTATG
* *
79267152 AAAAACGCCGCTAAAGACTAGGACTTTTAGCGGCGCTTTTATA
1 AAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTATG
79267195 AAAAACGCCGCTAA
1 AAAAACGCCGCTAA
79267209 TTTACCCAGT
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 38 0.29
43 92 0.71
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTATG
Found at i:79268833 original size:40 final size:39
Alignment explanation
Indices: 79268788--79268918 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 39
79268778 CGGAATATAA
79268788 CCGGATATAATCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79268828 CCGGATAAAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--TCATTGCACAAATGCCTTCGGGTCTTAGC
* ** * * * *
79268868 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCA-TTGCACAAATGCCTTCGGGTCTTAGC
79268908 CCGGATATAAT
1 CCGGATATAAT
79268919 TTCCAGCATA
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
38 1 0.01
40 68 0.94
41 1 0.01
42 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79268932 original size:40 final size:40
Alignment explanation
Indices: 79268804--79268954 Score: 130
Period size: 40 Copynumber: 3.8 Consensus size: 40
79268794 ATAATCATGT
* * *
79268804 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
79268844 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
79268884 GCGCAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79268924 GCATAATTGTCTTCGGGAT-TTAG-CCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
79268955 CATTCAATTT
Statistics
Matches: 88, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
39 10 0.11
40 75 0.85
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:79274111 original size:16 final size:17
Alignment explanation
Indices: 79274080--79274124 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
79274070 AAAGAGATGC
79274080 AAGAATA-AGAGAAAAG
1 AAGAATATAGAGAAAAG
79274096 AAGAATATAGAG-AAAG
1 AAGAATATAGAGAAAAG
79274112 AGAGAATTATAGA
1 A-AGAA-TATAGA
79274125 TAGAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.13
Consensus pattern (17 bp):
AAGAATATAGAGAAAAG
Found at i:79275387 original size:17 final size:18
Alignment explanation
Indices: 79275354--79275387 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79275344 TATCTCTTAA
79275354 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
79275372 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
79275388 AAAACAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:79275623 original size:27 final size:26
Alignment explanation
Indices: 79275588--79275647 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
79275578 TCAATTTTCC
79275588 AATAGTAAACCCTA-AACCTAAACCCCA
1 AATA-TAAA-CCTATAACCTAAACCCCA
* *
79275615 AACTATAAACCTATATCCTAAACCCTA
1 AA-TATAAACCTATAACCTAAACCCCA
79275642 AATATA
1 AATATA
79275648 TGTATATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
26 8 0.28
27 19 0.66
28 2 0.07
ACGTcount: A:0.48, C:0.28, G:0.02, T:0.22
Consensus pattern (26 bp):
AATATAAACCTATAACCTAAACCCCA
Found at i:79275643 original size:20 final size:20
Alignment explanation
Indices: 79275593--79275643 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
79275583 TTTCCAATAG
79275593 TAAACCCTAAACCTAAACCC
1 TAAACCCTAAACCTAAACCC
* ** * *
79275613 CAAACTATAAACCTATATCC
1 TAAACCCTAAACCTAAACCC
79275633 TAAACCCTAAA
1 TAAACCCTAAA
79275644 TATATGTATA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAACCCTAAACCTAAACCC
Found at i:79276011 original size:21 final size:22
Alignment explanation
Indices: 79275975--79276015 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
79275965 TGTTTTTTAG
79275975 AGTTTAGGGTTTTAGGGGTTAT
1 AGTTTAGGGTTTTAGGGGTTAT
*
79275997 AGTTTAGTG-TTTAGGGGTT
1 AGTTTAGGGTTTTAGGGGTT
79276016 TTTAGGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (22 bp):
AGTTTAGGGTTTTAGGGGTTAT
Found at i:79276148 original size:41 final size:41
Alignment explanation
Indices: 79276103--79276384 Score: 352
Period size: 41 Copynumber: 6.9 Consensus size: 41
79276093 ATTATATGAC
* **
79276103 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTATT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
79276144 TTTTAGCGGTGTTTTACCAAATGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
79276185 TTTTAGCGGCGTTTTGCCAAAAGCGCGGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
79276226 TTTTAGCGGCGTTCTGCCAAAAGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
79276267 TTTTAGCGGCGTTCTGCCAAAAGCGCCGCTAATGCT-TTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * ** *
79276307 TTTTAGCGGTGTTTTAACAAAAAATGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCTGGT
* * *
79276348 TTTTAGCGGCATTTTACCAAAAACGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
79276385 CGTGTTTTAT
Statistics
Matches: 214, Mismatches: 25, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
40 35 0.16
41 178 0.83
42 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:79283416 original size:43 final size:42
Alignment explanation
Indices: 79283351--79283438 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 42
79283341 ATAGGCATCG
*
79283351 CATCCACAATGAACTCAGACCACTCAACGAGCTCAGATGCTCA
1 CATCCACAATGAACTCAGACCACTCAACAAGCTCAGATGC-CA
* * *
79283394 CATCCATAATGAACTC-GAACCACTCAACAAGTTCGGATGCCA
1 CATCCACAATGAACTCAG-ACCACTCAACAAGCTCAGATGCCA
79283436 CAT
1 CAT
79283439 ATCTCACGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 6 0.15
43 34 0.85
ACGTcount: A:0.35, C:0.33, G:0.14, T:0.18
Consensus pattern (42 bp):
CATCCACAATGAACTCAGACCACTCAACAAGCTCAGATGCCA
Found at i:79286807 original size:19 final size:19
Alignment explanation
Indices: 79286785--79286843 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
79286775 CACTTATGTG
79286785 CCCCTGTTGTACTTCGGTA
1 CCCCTGTTGTACTTCGGTA
* *
79286804 CCCCTGATCGTACTTAC-GTG
1 CCCCTG-TTGTACTT-CGGTA
79286824 CCCCTGTTGTACTTCGGTA
1 CCCCTGTTGTACTTCGGTA
79286843 C
1 C
79286844 GCTAATCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 1 0.03
19 16 0.48
20 15 0.45
21 1 0.03
ACGTcount: A:0.12, C:0.34, G:0.20, T:0.34
Consensus pattern (19 bp):
CCCCTGTTGTACTTCGGTA
Found at i:79286825 original size:39 final size:39
Alignment explanation
Indices: 79286764--79286971 Score: 197
Period size: 39 Copynumber: 5.4 Consensus size: 39
79286754 ATATAATTAC
* * *
79286764 ACCCTTGATCACACTTATGTGCCCCTGTTGTACTTCGGT
1 ACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGT
*
79286803 ACCCCTGATCGTACTTACGTGCCCCTGTTGTACTTCGGT
1 ACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGT
* * * ** **
79286842 A-CGCTAATCTCACTTGTGTGCCCCTGTTGTACTTTTGT
1 ACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGT
* * **
79286880 ACCCCTGATCGCACTTACATGCCCCTATTGTACTTCAAT
1 ACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGT
* * * *
79286919 AACCCTTATCGCACTTAC--GCCCTTATTGTACTTCGGT
1 ACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGT
* * *
79286956 ACTCCTAATAGCACTT
1 ACCCCTGATCGCACTT
79286972 TTTTTTCGTG
Statistics
Matches: 137, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
37 28 0.20
38 30 0.22
39 79 0.58
ACGTcount: A:0.18, C:0.32, G:0.15, T:0.35
Consensus pattern (39 bp):
ACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGT
Found at i:79290417 original size:93 final size:93
Alignment explanation
Indices: 79290305--79290477 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
79290295 CGCCCATAAG
* * *
79290305 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGCGAACTCGGACTCAACTCA
79290370 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
79290398 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGCGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGCGAACTCGGACTCAACTCA
79290463 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
79290478 CAAATATCCC
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.27, C:0.32, G:0.22, T:0.19
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGCGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:79290473 original size:46 final size:46
Alignment explanation
Indices: 79290298--79290473 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
79290288 TGTAACCCGC
* *
79290298 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * * *
79290344 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
*
79290394 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
79290437 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
79290474 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.61
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:79298801 original size:40 final size:40
Alignment explanation
Indices: 79298703--79298879 Score: 171
Period size: 40 Copynumber: 4.4 Consensus size: 40
79298693 TTCGAATGGT
* * *
79298703 ATCCGGGCTAAGTCTCGAAGG-ATTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCA-TTTGTGC-GAGTTACTAA
* *
79298744 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
79298784 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* ** * * *
79298824 ATCCGGGCTAATTCTTGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
79298865 A-CCGGGCTATGTCCC
1 ATCCGGGCTAAGTCCC
79298880 AAAGACAATC
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
40 84 0.75
41 27 0.24
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:79298846 original size:80 final size:81
Alignment explanation
Indices: 79298705--79298879 Score: 203
Period size: 80 Copynumber: 2.2 Consensus size: 81
79298695 CGAATGGTAT
* *
79298705 CCGGGCTAAGTCTCGAAGGATTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGATTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
79298770 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * * **
79298786 CCGGGTTAAGTCCCGAAGGCA-TTTGTGC-GAGTTACTAAATCCGGG-CTAATTCTTGAAGGCAA
1 CCGGGCTAAGTCCCGAAGG-ATTTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAA
* * * *
79298848 TTGTGCGAATCACTATAA
64 TTGTGCGAGTTACCAAAA
*
79298866 CCGGGCTATGTCCC
1 CCGGGCTAAGTCCC
79298880 AAAGACAATC
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 53 0.67
81 24 0.30
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGATTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:79298896 original size:80 final size:80
Alignment explanation
Indices: 79298739--79298923 Score: 176
Period size: 80 Copynumber: 2.3 Consensus size: 80
79298729 GTGCTAAGTG
* * * * *
79298739 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCAAAG
* * * *
79298804 GCATTTGTGCGAGTT
66 ACAATCGAGCGAGTT
** * * *
79298819 ACTAAATCCGGG-CTAATTCTTGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCAAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCAAA
*
79298883 GACAATCGAGCGAGTC
65 GACAATCGAGCGAGTT
* * * *
79298899 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
79298924 TACGTGATTC
Statistics
Matches: 82, Mismatches: 21, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
79 6 0.07
80 76 0.93
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCAAAG
ACAATCGAGCGAGTT
Found at i:79304430 original size:46 final size:45
Alignment explanation
Indices: 79304380--79304553 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
79304370 TGGTTGAGCA
79304380 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
79304426 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
*
79304472 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
79304518 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79304554 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 16 0.15
46 83 0.76
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:79304534 original size:92 final size:91
Alignment explanation
Indices: 79304377--79304546 Score: 295
Period size: 92 Copynumber: 1.9 Consensus size: 91
79304367 GGATGGTTGA
* *
79304377 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79304442 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGT-CGAGTTCGTGAATGTAACTAG
* *
79304469 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79304534 TGAGTCGAGTTCG
66 TGAGTCGAGTTCG
79304547 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 8 0.11
92 66 0.89
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (91 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAATGTAACTAG
Found at i:79321840 original size:80 final size:80
Alignment explanation
Indices: 79321702--79321882 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
79321692 TTCGAATGAT
* * * *
79321702 GTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGC-AT
1 GTCCGGGCTAAGACCCGAAGGCTTCGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCAAT
* *
79321766 TGGTGCGAGTTAATAA
66 T-GTGCAAGTTAACAA
* * *
79321782 GTCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTTG-TTATATCCGGGCTAAGACCCGAAGGCA
1 GTCCGGGCTAAGACCCGAAGGC-TTCGTGCTAAG-TGACTATATCCGGACTAAGACCCGAAGGCA
*
79321845 ATTGTGCAAGTTACCAA
64 ATTGTGCAAGTTAACAA
* * *
79321862 ATCCGGGTTAAGACCTGAAGG
1 GTCCGGGCTAAGACCCGAAGG
79321883 TAATTGTGCT
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 74 0.87
81 11 0.13
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (80 bp):
GTCCGGGCTAAGACCCGAAGGCTTCGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCAAT
TGTGCAAGTTAACAA
Found at i:79321866 original size:40 final size:39
Alignment explanation
Indices: 79321703--79321891 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 39
79321693 TCGAATGATG
* * * *
79321703 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCATTGTGC-AAGTTACTAAA
* * * * * *
79321743 TCCGGACTAGGATCCGAAGGCATTGGTGCGAGTTAATAAG
1 TCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTTACTAAA
* ** *
79321783 TCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATA
1 TCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTTACTAAA
*
79321823 TCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAA
1 TCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTTACTAAA
* * *
79321863 TCCGGGTTAAGACCTGAAGGTAATTGTGC
1 TCCGGGCTAAGACCCGAAGG-CATTGTGC
79321892 TTGTGGTTAT
Statistics
Matches: 120, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
40 113 0.94
41 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGACCCGAAGGCATTGTGCAAGTTACTAAA
Found at i:79321901 original size:80 final size:80
Alignment explanation
Indices: 79321703--79321907 Score: 191
Period size: 80 Copynumber: 2.6 Consensus size: 80
79321693 TCGAATGATG
* * * * ** * *
79321703 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGAATTCGTGC-GAGTGGTTATATCCGGACTAAGACCCGAAGGCATT
* * *
79321767 GGTGCGAGTTAATAAG
65 GGTGCAAGTTAACAAA
* * *
79321783 TCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCAATT
1 TCCGGGCTAAGACCCGAAGGAATTCGTGCGAGTGGTTATATCCGGACTAAGACCCGAAGGC-ATT
*
79321848 -GTGCAAGTTACCAAA
65 GGTGCAAGTTAACAAA
* * **
79321863 TCCGGGTTAAGACCTGAAGGTAATT-GTGCTTGTGGTTATATCCGG
1 TCCGGGCTAAGACCCGAAGG-AATTCGTGCGAGTGGTTATATCCGG
79321908 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
80 90 0.88
81 12 0.12
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGACCCGAAGGAATTCGTGCGAGTGGTTATATCCGGACTAAGACCCGAAGGCATTG
GTGCAAGTTAACAAA
Found at i:79321906 original size:40 final size:40
Alignment explanation
Indices: 79321783--79321921 Score: 122
Period size: 40 Copynumber: 3.5 Consensus size: 40
79321773 AGTTAATAAG
* * *
79321783 TCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATA
1 TCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGTTATA
* **** *
79321823 TCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAA
1 TCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGTTATA
* * **
79321863 TCCGGGTTAAGACCTGAAGGTAATTGTGCTTGTGGTTATA
1 TCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGTTATA
79321903 TCC-GGTTAA-ATCCCGAAGG
1 TCCGGGTTAAGA-CCCGAAGG
79321922 TATGTGACTC
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.16
40 64 0.79
41 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGTTATA
Found at i:79329741 original size:39 final size:40
Alignment explanation
Indices: 79329641--79329802 Score: 183
Period size: 39 Copynumber: 4.2 Consensus size: 40
79329631 TCGAATGATG
* *
79329641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * *
79329681 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
79329721 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* *
79329760 -CCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
79329798 -CCGGG
1 TCCGGG
79329803 TTCGACTCGA
Statistics
Matches: 104, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
38 30 0.29
39 34 0.33
40 33 0.32
41 7 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:79329785 original size:38 final size:38
Alignment explanation
Indices: 79329642--79329802 Score: 173
Period size: 40 Copynumber: 4.1 Consensus size: 38
79329632 CGAATGATGT
* * *
79329642 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGC-AAGTTACTA-AA
* * * *
79329682 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATT-GTGCAAGTTACTAAA
79329721 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCA-TTGTGCAAGTTACTAAA
* *
79329760 CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTGTGCAAGTTACTAAA
79329798 CCGGG
1 CCGGG
79329803 TTCGACTCGA
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
38 30 0.29
39 33 0.32
40 34 0.33
41 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCAAGTTACTAAA
Done.