Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 256 of 438
Found at i:79329803 original size:38 final size:37
Alignment explanation
Indices: 79329694--79329804 Score: 159
Period size: 38 Copynumber: 2.9 Consensus size: 37
79329684 GGACTAGGAT
* *
79329694 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGC
1 CCGAAGGCATT-GTGCGAGTTACTAAA-CCGGGTTAAGC
*
79329733 CCGAAGGCATTTGTGCAAGTTACTAAACCGGGTTAAGTC
1 CCGAAGGCA-TTGTGCGAGTTACTAAACCGGGTTAAG-C
79329772 CCGAAGGCATTGTGCGAGTTACTAAACCGGGTT
1 CCGAAGGCATTGTGCGAGTTACTAAACCGGGTT
79329805 CGACTCGAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
38 32 0.48
39 32 0.48
40 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (37 bp):
CCGAAGGCATTGTGCGAGTTACTAAACCGGGTTAAGC
Found at i:79334958 original size:47 final size:47
Alignment explanation
Indices: 79334837--79335008 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 47
79334827 GGATGGTTGA
*
79334837 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
79334885 G--TCTGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
* **
79334928 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAAT
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
79334978 G---CC-AGCTCATTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
79335009 TAGGGGCGGG
Statistics
Matches: 107, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 26 0.24
45 5 0.05
46 29 0.27
47 29 0.27
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:79338459 original size:38 final size:43
Alignment explanation
Indices: 79338407--79338522 Score: 152
Period size: 38 Copynumber: 2.7 Consensus size: 43
79338397 ATGGTTGAGC
79338407 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAG-GATG-A-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGAGATGAACTAG
*
79338446 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-AGAGATG-AACTA-G
79338491 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
79338523 CTTATGGATG
Statistics
Matches: 66, Mismatches: 2, Indels: 11
0.84 0.03 0.14
Matches are distributed among these distances:
38 29 0.44
39 1 0.02
40 4 0.06
42 1 0.02
43 1 0.02
45 1 0.02
47 29 0.44
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (43 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGAGATGAACTAG
Found at i:79338470 original size:20 final size:20
Alignment explanation
Indices: 79338408--79338470 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
79338398 TGGTTGAGCA
79338408 TCCGAACTCGTTGAGTTGAG
1 TCCGAACTCGTTGAGTTGAG
* *
79338428 TCCG-A---GTTCAGGATGATG
1 TCCGAACTCGTTGA-GTTGA-G
79338446 TCCGAACTCGTTGAGTTGAG
1 TCCGAACTCGTTGAGTTGAG
79338466 TCCGA
1 TCCGA
79338471 GTTCGTGAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 4 0.12
17 4 0.12
18 5 0.15
19 2 0.06
20 10 0.30
21 4 0.12
22 4 0.12
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (20 bp):
TCCGAACTCGTTGAGTTGAG
Found at i:79345988 original size:46 final size:45
Alignment explanation
Indices: 79345938--79346110 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
79345928 TGGTTGAGCA
79345938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * * *
79345984 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G
* *
79346029 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATAGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * *
79346077 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
79346111 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAATG
Found at i:79346094 original size:93 final size:93
Alignment explanation
Indices: 79345935--79346105 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
79345925 GGATGGTTGA
* * * *
79345935 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
79346000 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
*
79346028 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATAGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
79346093 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
79346106 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:79351397 original size:40 final size:40
Alignment explanation
Indices: 79351295--79351478 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
79351285 AAATTGAATG
* * * * *
79351295 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
79351335 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
79351375 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCCAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
79351415 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
79351455 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
79351479 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 114 0.95
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:79357090 original size:40 final size:40
Alignment explanation
Indices: 79356989--79357173 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
79356979 TATTCGAATG
* * * *
79356989 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTGACT
* * * *
79357030 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
79357070 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
79357110 ATATCCGGGCTAAGTCCCGAAGGCGTTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
79357149 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
79357174 CTTGTGCGAG
Statistics
Matches: 120, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 93 0.77
41 26 0.22
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:79357133 original size:80 final size:81
Alignment explanation
Indices: 79356989--79357173 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 81
79356979 TATTCGAATG
* * * *
79356989 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
*
79357054 ATTTATGCGAGTTA-C
66 ATTTATGCGAGTGATC
* * *
79357069 TATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCCGAAG
1 -ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGAT-CCGAAG
* *
79357132 GCGTTTATGCTAGTGATC
64 GCATTTATGCGAGTGATC
79357150 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
79357174 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 60 0.67
81 29 0.32
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
ATTTATGCGAGTGATC
Found at i:79362546 original size:40 final size:40
Alignment explanation
Indices: 79362445--79362629 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
79362435 TATTCGAATG
* * * * * *
79362445 ATATCCGGGCTAAGTCCTGATGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTGACT
* * * *
79362486 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
79362526 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * *
79362566 ATATCTGGGCTAAGTCCCGAAGGCGTTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
79362605 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
79362630 CTTGTGTGAG
Statistics
Matches: 116, Mismatches: 27, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 91 0.78
41 24 0.21
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:79367513 original size:29 final size:29
Alignment explanation
Indices: 79367480--79367539 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
79367470 GCACGATGAG
*
79367480 AATGTGTATAGACTATCAATAGCTCAACA
1 AATGTGTATAGACTATCAACAGCTCAACA
79367509 AATGTGTATAGACTATCAACAGCTCAACA
1 AATGTGTATAGACTATCAACAGCTCAACA
79367538 AA
1 AA
79367540 GTGACTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.25
Consensus pattern (29 bp):
AATGTGTATAGACTATCAACAGCTCAACA
Found at i:79369206 original size:24 final size:24
Alignment explanation
Indices: 79369179--79369245 Score: 95
Period size: 23 Copynumber: 2.9 Consensus size: 24
79369169 CAGCTTGTAA
79369179 GAGCTTACTGTTTTCAGCTCAT-T
1 GAGCTTACTGTTTTCAGCTCATAT
*
79369202 GGAGCTTACTGTTTT-AGCTCGTAT
1 -GAGCTTACTGTTTTCAGCTCATAT
79369226 GAGCTTACTG-TTTCAGCTCA
1 GAGCTTACTGTTTTCAGCTCA
79369246 ATAAAGCTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
22 3 0.08
23 21 0.54
24 15 0.38
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (24 bp):
GAGCTTACTGTTTTCAGCTCATAT
Found at i:79369229 original size:23 final size:23
Alignment explanation
Indices: 79369170--79369244 Score: 89
Period size: 23 Copynumber: 3.2 Consensus size: 23
79369160 CCGATATATC
* *
79369170 AGCTTGTAAGAGCTTACTGTTTT
1 AGCTCGTATGAGCTTACTGTTTT
*
79369193 CAGCTCAT-TGGAGCTTACTGTTTT
1 -AGCTCGTAT-GAGCTTACTGTTTT
*
79369217 AGCTCGTATGAGCTTACTGTTTC
1 AGCTCGTATGAGCTTACTGTTTT
79369240 AGCTC
1 AGCTC
79369245 AATAAAGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
23 24 0.55
24 20 0.45
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (23 bp):
AGCTCGTATGAGCTTACTGTTTT
Found at i:79369253 original size:23 final size:23
Alignment explanation
Indices: 79369178--79369257 Score: 90
Period size: 23 Copynumber: 3.4 Consensus size: 23
79369168 TCAGCTTGTA
*
79369178 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACTG-TTTCAGCTCAAT
* * *
79369202 GGAGCTTACTGTTTTAGCTC-GT
1 AGAGCTTACTGTTTCAGCTCAAT
79369224 ATGAGCTTACTGTTTCAGCTCAAT
1 A-GAGCTTACTGTTTCAGCTCAAT
*
79369248 AAAGCTTACT
1 AGAGCTTACT
79369258 ATTCATCAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 1 0.02
23 34 0.72
24 12 0.26
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.39
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:79369282 original size:26 final size:25
Alignment explanation
Indices: 79369250--79369299 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
79369240 AGCTCAATAA
* *
79369250 AGCTTACTATTCATCAGCTCGAAAGG
1 AGCTTACCAATCAT-AGCTCGAAAGG
*
79369276 AGCTTACCAATCATGGCTCGAAAG
1 AGCTTACCAATCATAGCTCGAAAG
79369300 AGCATAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (25 bp):
AGCTTACCAATCATAGCTCGAAAGG
Found at i:79370401 original size:65 final size:66
Alignment explanation
Indices: 79370248--79370403 Score: 174
Period size: 66 Copynumber: 2.4 Consensus size: 66
79370238 CAGTATGCTC
* * **
79370248 CACACGGCCTAGCACACGGGCGTCTGACTGGCCATATGGTACAAGTCAGTATACTCCTTTAGATG
1 CACACGGCCTAGCACACGGGTGTGTGACTGGCCATATGGTACAAGTCAGTATACTCCTGCAGATG
79370313 G
66 G
* * * *
79370314 CACACGGCCTAGCACATGGGTGTGTGACTTGGCCATGTTG-ATAAGTCAGTATA-TCCTGCA-AT
1 CACACGGCCTAGCACACGGGTGTGTGAC-TGGCCATATGGTACAAGTCAGTATACTCCTGCAGA-
*
79370376 TGT
64 TGG
* *
79370379 CACACTGCCTGGCACACGGGTGTGT
1 CACACGGCCTAGCACACGGGTGTGT
79370404 CCTCGACCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
64 1 0.01
65 29 0.38
66 37 0.49
67 9 0.12
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (66 bp):
CACACGGCCTAGCACACGGGTGTGTGACTGGCCATATGGTACAAGTCAGTATACTCCTGCAGATG
G
Found at i:79373502 original size:15 final size:15
Alignment explanation
Indices: 79373478--79373508 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79373468 GGTTGTGTCT
79373478 CTACCCGTATGTTTA
1 CTACCCGTATGTTTA
*
79373493 CTACCTGTATGTTTA
1 CTACCCGTATGTTTA
79373508 C
1 C
79373509 CACCATGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.26, G:0.13, T:0.42
Consensus pattern (15 bp):
CTACCCGTATGTTTA
Found at i:79375506 original size:22 final size:21
Alignment explanation
Indices: 79375467--79375507 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
79375457 TACTAGATAC
*
79375467 AGGGGCACACGCCTGTGTGGG
1 AGGGGCACACGCCCGTGTGGG
*
79375488 AGGGGCAACACTCCCGTGTG
1 AGGGGC-ACACGCCCGTGTG
79375508 ACCAATTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.17, C:0.27, G:0.41, T:0.15
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGGG
Found at i:79376630 original size:46 final size:45
Alignment explanation
Indices: 79376578--79376744 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 45
79376568 CTCGTAGCCA
*
79376578 ATGCATGTCCCAGACATGTTTTACACTG-ACTTACGTCTCGAGAT-C-G
1 ATGCATGTCCCAGACATGTCTTACACTGCAC-T-CGTCTC-A-ATGCTG
*
79376624 ATGCATGTCCCAGATATGTCTTACACTAGCACTCGTCTCAATGCTG
1 ATGCATGTCCCAGACATGTCTTACACT-GCACTCGTCTCAATGCTG
** *
79376670 ATGCAATGTCCCAGACATGATCTTACACTG-GTTC-TCAT-AATGTGGCCG
1 ATGC-ATGTCCCAGACATG-TCTTACACTGCACTCGTC-TCAA--T-GCTG
79376718 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
79376745 AGCTCACAAT
Statistics
Matches: 105, Mismatches: 6, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
44 2 0.02
45 6 0.06
46 48 0.46
47 31 0.30
48 18 0.17
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGCACTCGTCTCAATGCTG
Found at i:79377288 original size:17 final size:17
Alignment explanation
Indices: 79377266--79377299 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
79377256 ATAGTCATTT
79377266 TAGGTGTTTTCATGCTA
1 TAGGTGTTTTCATGCTA
79377283 TAGGTGTTTTCATGCTA
1 TAGGTGTTTTCATGCTA
79377300 AAACCTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.47
Consensus pattern (17 bp):
TAGGTGTTTTCATGCTA
Found at i:79383474 original size:30 final size:30
Alignment explanation
Indices: 79383440--79383499 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
79383430 ACTTAACAAG
*
79383440 CAAATACCTCTAAAATAGTAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
79383470 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
79383500 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.57, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:79386568 original size:230 final size:230
Alignment explanation
Indices: 79386165--79386623 Score: 810
Period size: 230 Copynumber: 2.0 Consensus size: 230
79386155 TGACTACGCA
*
79386165 CAAAATCAGGTTGTTACATGGTAAAACCCTAATCTCTCAACCATTTTGCAAAATAACCCCCTTCA
1 CAAAATCAGGTTGTTACATGGTAAAACACTAATCTCTCAACCATTTTGCAAAATAACCCCCTTCA
*
79386230 TATAAAGATTATGTTACAAGGAGTCCAAAATAAAAAAATCATCAAGAATAACCTTATAAATGACT
66 TAGAAAGATTATGTTACAAGGAGTCCAAAATAAAAAAATCATCAAGAATAACCTTATAAATGACT
* *
79386295 TACTTGTAAGAGATGTTAATGGTTGATATTTTGTGCTCTCAAAACCCCCCTTTTGAAGATGAAAA
131 TACTTGTAAGAGATGTTAATGGCTGATATTTTGTGCTCTCAAAACCCCCCTTTTGAAAATGAAAA
* *
79386360 TTGGTTGAAGAAGAAGAAAATAAAAAGATGAAGCC
196 TCGGTTGAAAAAGAAGAAAATAAAAAGATGAAGCC
* * *
79386395 CAAAATCGGGTTGTTACATTGTAAAACACTAATCTCTCAACCATTTTGCAAAATAATCCCCTTCA
1 CAAAATCAGGTTGTTACATGGTAAAACACTAATCTCTCAACCATTTTGCAAAATAACCCCCTTCA
* * *
79386460 TAGAAAGCTTATGTTACAAGGAGTCCAAAATACAAAAATCATCAAGAATAACCTTATAGATGACT
66 TAGAAAGATTATGTTACAAGGAGTCCAAAATAAAAAAATCATCAAGAATAACCTTATAAATGACT
79386525 TACTTGTAAGAGATGTTAATGGCTGATATTTTGTGCTCTCAAAACCCCCCTTTTGAAAATGAAAA
131 TACTTGTAAGAGATGTTAATGGCTGATATTTTGTGCTCTCAAAACCCCCCTTTTGAAAATGAAAA
79386590 TCGGTTGAAAAAGAAGAAAATAAAAAGATGAAGC
196 TCGGTTGAAAAAGAAGAAAATAAAAAGATGAAGC
79386624 ATTTTTTTGT
Statistics
Matches: 217, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
230 217 1.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (230 bp):
CAAAATCAGGTTGTTACATGGTAAAACACTAATCTCTCAACCATTTTGCAAAATAACCCCCTTCA
TAGAAAGATTATGTTACAAGGAGTCCAAAATAAAAAAATCATCAAGAATAACCTTATAAATGACT
TACTTGTAAGAGATGTTAATGGCTGATATTTTGTGCTCTCAAAACCCCCCTTTTGAAAATGAAAA
TCGGTTGAAAAAGAAGAAAATAAAAAGATGAAGCC
Found at i:79391312 original size:79 final size:81
Alignment explanation
Indices: 79391211--79391395 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 81
79391201 ACGACTCGCT
** * *
79391211 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGA-CTCGCATGAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TA-TGATCTCGCACGAATGCCTTC-GGATCCTAACC
* *
79391273 CGGGTTTAGTAACTT-GCA
63 CGGATATAGTAACTTAGCA
* * **
79391291 CAAATGCCCTCGGG-CTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTATGATCTCGCACGAATGCCTTCGGATCCTAACCCGG
*
79391355 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
79391371 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79391396 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
78 5 0.06
79 50 0.57
80 33 0.38
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTATGATCTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:79391336 original size:39 final size:40
Alignment explanation
Indices: 79391204--79391395 Score: 133
Period size: 40 Copynumber: 4.8 Consensus size: 40
79391194 GGATATAACG
* * * *
79391204 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
* *
79391244 ACTCGCATGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * * *
79391284 ACTTGCACAAATGCCCTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * ** * *
79391323 TCTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAGTA
* * *
79391363 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
79391396 CATCATTCGA
Statistics
Matches: 120, Mismatches: 26, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 77 0.64
41 12 0.10
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:79398965 original size:40 final size:40
Alignment explanation
Indices: 79398872--79399010 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 40
79398862 GGATATAACG
* * *
79398872 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCC-GATTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
* *
79398912 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * * *
79398952 ACTTGCACAAATGCCCTCGGG-CTTAGCCTGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
* *
79398991 TCTCGCACGAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
79399011 ATCCTAGTCC
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 30 0.37
40 46 0.57
41 5 0.06
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:79399063 original size:40 final size:40
Alignment explanation
Indices: 79398874--79399063 Score: 111
Period size: 40 Copynumber: 4.8 Consensus size: 40
79398864 ATATAACGAC
* ** * *
79398874 TCGCTCAAATGCCTTCGGGACGAAGCCCGATTATAGTGAC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGAATATAGTAACT
* * ** *
79398914 TCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACT
1 TCGCAC-AAAGCCTTCGGGACTTAGCCCGAATATAGTAACT
* * * * * *
79398955 T-GCACAAATGCCCTCGGG-CTTAGCCTGGATTTATTATC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGAATATAGTAACT
* * * *
79398993 TCGCACGAATGCCTTC-GGATCCTAGTCCGAATATAGTCACT
1 TCGCAC-AAAGCCTTCGGGA-CTTAGCCCGAATATAGTAACT
*
79399034 TAGCACAAAGCCTTCGGGACTTAGCCCGAA
1 TCGCACAAAGCCTTCGGGACTTAGCCCGAA
79399064 CATCATTCGA
Statistics
Matches: 111, Mismatches: 30, Indels: 18
0.70 0.19 0.11
Matches are distributed among these distances:
38 3 0.03
39 26 0.23
40 71 0.64
41 11 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCGCACAAAGCCTTCGGGACTTAGCCCGAATATAGTAACT
Found at i:79401538 original size:28 final size:28
Alignment explanation
Indices: 79401469--79401569 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79401459 GACAAGATTG
* * * *
79401469 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79401499 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79401527 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79401556 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79401570 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79401563 original size:29 final size:28
Alignment explanation
Indices: 79401498--79401569 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
79401488 AAAATTGTAC
*
79401498 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
79401526 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
79401555 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79401570 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:79409350 original size:28 final size:28
Alignment explanation
Indices: 79409281--79409381 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79409271 GACAAGATTG
* * * *
79409281 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79409311 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79409339 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79409368 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79409382 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79409375 original size:29 final size:28
Alignment explanation
Indices: 79409310--79409381 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
79409300 AAAATTGTAC
*
79409310 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
79409338 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
79409367 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79409382 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:79425674 original size:28 final size:26
Alignment explanation
Indices: 79425618--79425707 Score: 99
Period size: 28 Copynumber: 3.3 Consensus size: 26
79425608 CAACATGGCT
* *
79425618 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGGCAGAGCC
*
79425644 ACCAGATACAGATAATTGTGGCAGGGCC
1 ACCAGA-ACAGAT-ATTGTGGCAGAGCC
* *
79425672 ACCAGAAACAGATTTTTGTGGCAGATCC
1 ACCAG-AACAGA-TATTGTGGCAGAGCC
79425700 ACCAGAAC
1 ACCAGAAC
79425708 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
26 6 0.11
27 9 0.17
28 37 0.69
29 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGCAGAGCC
Found at i:79425845 original size:26 final size:26
Alignment explanation
Indices: 79425809--79425870 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
79425799 CAAAATCAAC
* *
79425809 CCTAAGGGTATAATGGTTATTTTGCA
1 CCTAGGGGTATAATGGTCATTTTGCA
79425835 CCTAGGGGTATAATGGTCATTTTGCA
1 CCTAGGGGTATAATGGTCATTTTGCA
79425861 CCTAGGGGTA
1 CCTAGGGGTA
79425871 CAGTGGTGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTCATTTTGCA
Found at i:79425877 original size:26 final size:26
Alignment explanation
Indices: 79425809--79425883 Score: 96
Period size: 26 Copynumber: 2.9 Consensus size: 26
79425799 CAAAATCAAC
* * *
79425809 CCTAAGGGTATAATGGTTATTTTGCA
1 CCTAGGGGTACAATGGTCATTTTGCA
*
79425835 CCTAGGGGTATAATGGTCATTTTGCA
1 CCTAGGGGTACAATGGTCATTTTGCA
* *
79425861 CCTAGGGGTACAGTGGTGATTTT
1 CCTAGGGGTACAATGGTCATTTT
79425884 CATACTTAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.36
Consensus pattern (26 bp):
CCTAGGGGTACAATGGTCATTTTGCA
Found at i:79433545 original size:28 final size:28
Alignment explanation
Indices: 79433490--79433577 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
79433480 AGCATGGTTG
* * *
79433490 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGAGGCAGAGCCA
* *
79433516 CCAGATACAGATAATTGAGGCAGGGCCA
1 CCAGAAACAGATAATTGAGGCAGAGCCA
* *
79433544 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGAGGCAGAGCCA
79433572 CCAGAA
1 CCAGAA
79433578 TGCTTCCTCC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.08
27 6 0.12
28 41 0.80
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.16
Consensus pattern (28 bp):
CCAGAAACAGATAATTGAGGCAGAGCCA
Found at i:79437106 original size:40 final size:40
Alignment explanation
Indices: 79437047--79437250 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
79437037 TGGATGATAA
* * * * * *
79437047 CCGGGCTAAGTTCCAAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-TAT
*
79437087 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
79437127 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
79437167 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
* * *
79437207 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTA-CTATAT
79437247 CCGG
1 CCGG
79437251 TTAAATTCCG
Statistics
Matches: 153, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 3 0.02
40 150 0.98
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
Found at i:79443664 original size:47 final size:47
Alignment explanation
Indices: 79443610--79443835 Score: 353
Period size: 49 Copynumber: 4.7 Consensus size: 47
79443600 GATTTTACGC
79443610 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
79443657 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
79443704 GATGAATGTGAAAGTGTGTATATATGTGATAAGACCTAATGGCCGATGT
1 GATGAATGTG-AA-TGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
79443753 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCAGATGT
1 GATGAATGTG-AA-TGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
79443802 GATGAATGTGAAGGTGTATATATGTGATAAGGCC
1 GATGAATGTGAATGTGTATATATGTGATAAGGCC
79443836 GATGAATGTG
Statistics
Matches: 165, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 74 0.45
48 4 0.02
49 87 0.53
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:79443734 original size:96 final size:97
Alignment explanation
Indices: 79443610--79443835 Score: 372
Period size: 96 Copynumber: 2.4 Consensus size: 97
79443600 GATTTTACGC
79443610 GATGAATGTGAA-TGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GT
1 GATGAATGTGAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
79443672 GTATATATGTGATAAGGCCGAATGGCCA-ATGT
66 ATATATATGTGATAAGGCCGAATGG-CAGATGT
*
79443704 GATGAATGTGAAAGTGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
79443769 TATATATATGTGATAAGGCCTAATGGCAGATGT
65 TATATATATGTGATAAGGCCGAATGGCAGATGT
79443802 GATGAATGTGAAG-GTGTATATATGTGATAAGGCC
1 GATGAATGTGAAGTGTGTATATATGTGATAAGGCC
79443836 GATGAATGTG
Statistics
Matches: 123, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
94 10 0.08
95 2 0.02
96 64 0.52
97 8 0.07
98 39 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (97 bp):
GATGAATGTGAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATATGTGATAAGGCCGAATGGCAGATGT
Found at i:79443826 original size:16 final size:16
Alignment explanation
Indices: 79443807--79443862 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
79443797 GATGTGATGA
79443807 ATGTGAAGGTGTATAT
1 ATGTGAAGGTGTATAT
*
79443823 ATGTGATAAGGCCG-ATGA-
1 ATGTG--AAGG-TGTAT-AT
79443841 ATGTGAAGGTGTATAT
1 ATGTGAAGGTGTATAT
79443857 ATGTGA
1 ATGTGA
79443863 TAGGGCCGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 2 0.06
16 17 0.53
18 11 0.34
19 2 0.06
ACGTcount: A:0.32, C:0.04, G:0.32, T:0.32
Consensus pattern (16 bp):
ATGTGAAGGTGTATAT
Found at i:79443841 original size:34 final size:34
Alignment explanation
Indices: 79443802--79443871 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
79443792 TGGCAGATGT
79443802 GATGAATGTGAAGGTGTATATATGTGATAAGGCC
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCC
*
79443836 GATGAATGTGAAGGTGTATATATGTGATAGGGCC
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCC
79443870 GA
1 GA
79443872 GTGGCCAACG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.31, C:0.06, G:0.34, T:0.29
Consensus pattern (34 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCC
Found at i:79443892 original size:81 final size:83
Alignment explanation
Indices: 79443753--79443913 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 83
79443743 TGGCCGATGT
* * *
79443753 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAGGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCAGACGTGATGAATGTGAAAGTG
*
79443818 TATATATGTGATAAGGCC
66 TATAAATGTGATAAGGCC
* * * *
79443836 GATGAATGTG-AAG-GTGTATATATGTGATAGGGCCGAGTGGCCA-ACGTGATGGATGTGAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGG-CAGACGTGATGAATGTGAAAGT
79443898 GTATAAATGTGATAAG
65 GTATAAATGTGATAAG
79443914 TCCCGAAGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 54 0.78
82 5 0.07
83 10 0.14
ACGTcount: A:0.33, C:0.06, G:0.32, T:0.29
Consensus pattern (83 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCAGACGTGATGAATGTGAAAGTG
TATAAATGTGATAAGGCC
Found at i:79444575 original size:2 final size:2
Alignment explanation
Indices: 79444568--79444593 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
79444558 TATTCGAAGG
79444568 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
79444594 AGACAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:79450041 original size:40 final size:40
Alignment explanation
Indices: 79449986--79450071 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
79449976 CGGAATTTAA
* * *
79449986 CCGGATATAGCGATTCGCTCGATTGTCTTCGGGACA-TAGC
1 CCGGATATAGCGATTCGCACAATTGCCTTCGGGA-ATTAGC
* *
79450026 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGATATAGCGATTCGCACAATTGCCTTCGGGAATTAGC
79450066 CCGGAT
1 CCGGAT
79450072 TTAATAACTC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.03
40 38 0.97
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCGATTCGCACAATTGCCTTCGGGAATTAGC
Found at i:79450084 original size:40 final size:40
Alignment explanation
Indices: 79450012--79450191 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
79450002 GCTCGATTGT
* * * *
79450012 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* * *
79450052 CTTCGGGAATTAGCCCGGATTTAATAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
79450092 CTTCAGGACTTAACCCGGTTTTGGTAACTCGCGCAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
79450132 CTTCGGGAGTT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
79450173 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
79450192 CACCATTCGA
Statistics
Matches: 111, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
40 83 0.75
41 27 0.24
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:79457567 original size:40 final size:40
Alignment explanation
Indices: 79457459--79457668 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79457449 CGGGATTTAA
* * * * *
79457459 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79457499 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79457539 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79457579 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79457619 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79457659 CCGGATATAT
1 CCGGATATAT
79457669 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79470090 original size:40 final size:40
Alignment explanation
Indices: 79469982--79470191 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79469972 CGGGATTTAA
* * * * *
79469982 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79470022 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79470062 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79470102 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79470142 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79470182 CCGGATATAT
1 CCGGATATAT
79470192 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79474029 original size:40 final size:39
Alignment explanation
Indices: 79473985--79474099 Score: 106
Period size: 40 Copynumber: 2.9 Consensus size: 39
79473975 TTATAGTGAT
79473985 TCGCATAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCATAA-TGCCTTCGGGAATTAGCCCGGATTTAATAAC
* * * * **
79474025 TCGCATGAATGCCTTTGGGACTTAACCCGGTTTTGGTAAC
1 TCGCAT-AATGCCTTCGGGAATTAGCCCGGATTTAATAAC
* * *
79474065 TCGCACAAATGCCTTCAGGAGTT-GACCCGGATTTA
1 TCGCA-TAATGCCTTCGGGAATTAG-CCCGGATTTA
79474100 GTCATTTAGC
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
40 57 0.97
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (39 bp):
TCGCATAATGCCTTCGGGAATTAGCCCGGATTTAATAAC
Found at i:79494322 original size:31 final size:31
Alignment explanation
Indices: 79494284--79494345 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
79494274 TGTATGCTAA
79494284 TATACCATATGTATATAGCTTCATATTTCAT
1 TATACCATATGTATATAGCTTCATATTTCAT
79494315 TATACCATATGTATATAGCTTCATATTTCAT
1 TATACCATATGTATATAGCTTCATATTTCAT
79494346 GATTTTGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.45
Consensus pattern (31 bp):
TATACCATATGTATATAGCTTCATATTTCAT
Found at i:79498586 original size:16 final size:17
Alignment explanation
Indices: 79498559--79498590 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
79498549 ATAGTAGGGG
79498559 CAAATGTGTAAATTTTC
1 CAAATGTGTAAATTTTC
79498576 CAAAT-TGTAAATTTT
1 CAAATGTGTAAATTTT
79498591 AGGCTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (17 bp):
CAAATGTGTAAATTTTC
Found at i:79498909 original size:41 final size:41
Alignment explanation
Indices: 79498863--79499019 Score: 260
Period size: 41 Copynumber: 3.8 Consensus size: 41
79498853 GTGATTCGAC
* *
79498863 ATAGCTTCGGTTATATATGGCACTTAGTGTGCGAGATCAAG
1 ATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGATCAAG
*
79498904 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGATCAAG
1 ATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGATCAAG
*
79498945 ATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGATCGAG
1 ATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGATCAAG
* *
79498986 GTAGCTTCAGCTATATATGGCACTTAATGTGCGA
1 ATAGCTTCAGCTATATATGGCACTTAGTGTGCGA
79499020 TTTGAGTAGT
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 111 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
ATAGCTTCAGCTATATATGGCACTTAGTGTGCGAGATCAAG
Found at i:79501664 original size:29 final size:29
Alignment explanation
Indices: 79501625--79501703 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
79501615 CTTAATAATC
*
79501625 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
79501655 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
79501684 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
79501704 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:79502843 original size:17 final size:18
Alignment explanation
Indices: 79502806--79502843 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
79502796 CACTTTTTTT
79502806 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
79502825 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
79502842 TT
1 TT
79502844 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:79509459 original size:29 final size:29
Alignment explanation
Indices: 79509420--79509498 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
79509410 CTTAATAATC
*
79509420 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
79509450 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
79509479 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
79509499 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:79510632 original size:17 final size:18
Alignment explanation
Indices: 79510595--79510632 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
79510585 ACATTTTTTT
79510595 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
79510614 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
79510631 TT
1 TT
79510633 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:79513096 original size:16 final size:18
Alignment explanation
Indices: 79513075--79513112 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
79513065 AAACCATAAT
79513075 TAATATTA-CAAATTA-A
1 TAATATTATCAAATTACA
*
79513091 TAATATTATCCAATTACA
1 TAATATTATCAAATTACA
79513109 TAAT
1 TAAT
79513113 CAGTAGTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATATTATCAAATTACA
Found at i:79515308 original size:20 final size:20
Alignment explanation
Indices: 79515280--79515318 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
79515270 CTAGGAAATA
79515280 TGTGATCTGAGCTCATGATT
1 TGTGATCTGAGCTCATGATT
* *
79515300 TGTGGTCTGAGTTCATGAT
1 TGTGATCTGAGCTCATGAT
79515319 ATATGTGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.28, T:0.41
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGATT
Found at i:79524245 original size:42 final size:42
Alignment explanation
Indices: 79524191--79524309 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 42
79524181 TTAAGGTTAC
*
79524191 TGAGATTACATGTAAGACCATATCTAGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
*
79524233 TGAGACTT-CATGTAAGACCATAGT-TGGGCTATTGGCATCGATA
1 TGAGA-TTACATGTAAGACCATA-TCTGGGATA-TGGCATCGATA
* *
79524276 CGAAATTACATGTAAGACCATATCTGGGATATGG
1 TGAGATTACATGTAAGACCATATCTGGGATATGG
79524310 TCTTGGTATG
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
42 30 0.45
43 37 0.55
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:79525877 original size:17 final size:19
Alignment explanation
Indices: 79525845--79525887 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
79525835 CCATATTGCA
*
79525845 GGCCCATGTAGGCCCATAC
1 GGCCCATGTAGGCCCACAC
79525864 -GCCCATGT-GGCCCACAC
1 GGCCCATGTAGGCCCACAC
79525881 GGCCCAT
1 GGCCCAT
79525888 AATAGCCTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.19, C:0.42, G:0.26, T:0.14
Consensus pattern (19 bp):
GGCCCATGTAGGCCCACAC
Found at i:79528056 original size:51 final size:52
Alignment explanation
Indices: 79527987--79528124 Score: 160
Period size: 50 Copynumber: 2.7 Consensus size: 52
79527977 TGAGGTCGCA
* *
79527987 TGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGAAAACT-GTGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAA-TGGTGAGTCACG
* * ** *
79528038 TGTGTAGTACTAAATGCAGGCTACTA--CGTA-TATTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATGGTGA-GTCACG
79528088 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
79528125 TAGCTTCGGC
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
47 1 0.01
48 6 0.09
49 4 0.06
50 30 0.43
51 24 0.34
52 4 0.06
53 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (52 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATGGTGAGTCACG
Found at i:79530801 original size:28 final size:28
Alignment explanation
Indices: 79530769--79530866 Score: 164
Period size: 28 Copynumber: 3.5 Consensus size: 28
79530759 ATAGTAAGTC
79530769 CGCACACTTAGTGCTTAATATTCAAACT
1 CGCACACTTAGTGCTTAATATTCAAACT
79530797 CGCACACTTAGTGCTTAATATTCAAACT
1 CGCACACTTAGTGCTTAATATTCAAACT
79530825 CGCACACTTAGTGCTATACA-ATT-AAACT
1 CGCACACTTAGTGCT-TA-ATATTCAAACT
79530853 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79530867 CAATCTCATT
Statistics
Matches: 68, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
28 62 0.91
29 5 0.07
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATATTCAAACT
Found at i:79533906 original size:20 final size:18
Alignment explanation
Indices: 79533881--79533917 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
79533871 ATTGCTAAGT
79533881 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
79533901 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
79533918 TATGGGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:79534526 original size:46 final size:46
Alignment explanation
Indices: 79534476--79534649 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
79534466 GTTGAGCATC
*
79534476 CGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
* * * * *
79534522 CGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TT
* *
79534569 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-T
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
*
79534614 CTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79534650 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 59 0.56
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
Found at i:79534630 original size:93 final size:93
Alignment explanation
Indices: 79534471--79534641 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
79534461 GGATGGTTGA
*
79534471 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAGT
*
79534536 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
79534564 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-TCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTTC-GAACTCGTTGAG
79534628 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
79534642 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79535314 original size:43 final size:43
Alignment explanation
Indices: 79535251--79535338 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
79535241 TCCTTATTGA
79535251 GTCTATTTTTATGGGAAATAAACGGCATGGTCGTTGGAATTTT
1 GTCTATTTTTATGGGAAATAAACGGCATGGTCGTTGGAATTTT
*
79535294 GTCTATTTTTATGGGCAATAAACGGCATGGTCGTTGGAATTTT
1 GTCTATTTTTATGGGAAATAAACGGCATGGTCGTTGGAATTTT
79535337 GT
1 GT
79535339 ACAGGGAGAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (43 bp):
GTCTATTTTTATGGGAAATAAACGGCATGGTCGTTGGAATTTT
Found at i:79540375 original size:46 final size:45
Alignment explanation
Indices: 79540325--79540491 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 45
79540315 GACAAGGGCT
79540325 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* * ** **
79540371 AGTGTAAGACATGTCTGGGACATACATCGGCCTTGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-ACAGATGAGAGCC
* * * * * *
79540417 AATGTCAGACATGTCTGGGACATGCGTC-GACTAC-GA-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCACAGATGA-GAGCC
*
79540461 AGTGTAAGACATGTCTGGGACATGCGTCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
79540492 ACGGTTACAT
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
43 1 0.01
44 31 0.32
45 2 0.02
46 62 0.63
47 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:79543332 original size:20 final size:18
Alignment explanation
Indices: 79543307--79543343 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
79543297 ATTGCTAAGT
79543307 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
79543327 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
79543344 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:79543952 original size:46 final size:46
Alignment explanation
Indices: 79543900--79544075 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
79543890 TGGTTGAGCA
79543900 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
79543946 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
79543991 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
79544039 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79544076 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79544056 original size:93 final size:93
Alignment explanation
Indices: 79543897--79544067 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
79543887 GGATGGTTGA
* *
79543897 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
79543962 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
79543990 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
79544055 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79544068 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79551235 original size:29 final size:29
Alignment explanation
Indices: 79551176--79551272 Score: 139
Period size: 28 Copynumber: 3.4 Consensus size: 29
79551166 AGTAAGTCCA
*
79551176 CACACTTAGTGCT-TA-ATATTC-AATTCCG
1 CACACTTAGTGCTATACA-ATTCAAACT-CG
79551204 CACACTTAGTGCTATACAATTCAAACTCG
1 CACACTTAGTGCTATACAATTCAAACTCG
79551233 CACACTTAGTGCTATACAATT-AAACTCG
1 CACACTTAGTGCTATACAATTCAAACTCG
79551261 CACACTTAGTGC
1 CACACTTAGTGC
79551273 CAATCTCATT
Statistics
Matches: 65, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
28 32 0.49
29 29 0.45
30 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.30
Consensus pattern (29 bp):
CACACTTAGTGCTATACAATTCAAACTCG
Found at i:79553239 original size:40 final size:40
Alignment explanation
Indices: 79553131--79553380 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
79553121 CGGGATTTAA
* * * * *
79553131 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79553171 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79553211 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79553251 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79553291 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79553331 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79553371 CCGGATATAT
1 CCGGATATAT
79553381 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79556604 original size:22 final size:22
Alignment explanation
Indices: 79556579--79556620 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
79556569 AACTTAGAAT
*
79556579 AAATAAACAAAACAAAATGAAA
1 AAATAAACAAAAAAAAATGAAA
79556601 AAATAAACAAAAAAAAATGA
1 AAATAAACAAAAAAAAATGA
79556621 GAGGATACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.79, C:0.07, G:0.05, T:0.10
Consensus pattern (22 bp):
AAATAAACAAAAAAAAATGAAA
Found at i:79560658 original size:27 final size:28
Alignment explanation
Indices: 79560601--79560670 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
79560591 AAACTTGTAC
*
79560601 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
79560629 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
79560656 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79560671 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:79560681 original size:27 final size:27
Alignment explanation
Indices: 79560601--79560682 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
79560591 AAACTTGTAC
* * *
79560601 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
79560629 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
79560656 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
79560683 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:79567842 original size:27 final size:28
Alignment explanation
Indices: 79567785--79567854 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
79567775 AAACTTGTAC
*
79567785 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
79567813 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
79567840 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79567855 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:79567865 original size:27 final size:27
Alignment explanation
Indices: 79567785--79567866 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
79567775 AAACTTGTAC
* * *
79567785 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
79567813 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
79567840 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
79567867 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:79572695 original size:40 final size:40
Alignment explanation
Indices: 79572531--79572697 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
79572521 AAATTGAATG
* * * *
79572531 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGAGATT
* * * **
79572571 ATAT-CGGGTTAAGACCCGAAGGCAATTGGGCTAGAGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
**
79572610 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGAGATT
* * *
79572650 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GAGATT
79572690 ATATCCGG
1 ATATCCGG
79572698 TTATATTCCG
Statistics
Matches: 102, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
39 33 0.32
40 67 0.66
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
Found at i:79581575 original size:37 final size:37
Alignment explanation
Indices: 79581522--79581643 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
79581512 TATAAAAGAA
*
79581522 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
79581559 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
79581596 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
79581633 GTCTCACCCGG
1 GTCTTACCCGG
79581644 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:79581805 original size:49 final size:49
Alignment explanation
Indices: 79581745--79582057 Score: 581
Period size: 49 Copynumber: 6.4 Consensus size: 49
79581735 TCTTGCATTA
79581745 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
79581794 GCCATTGGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
79581843 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
79581892 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
79581941 GCCATTGGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
79581990 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
79582039 GCCATTAGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
79582058 CATATCTGTA
Statistics
Matches: 255, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 255 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:79594738 original size:40 final size:40
Alignment explanation
Indices: 79594678--79594858 Score: 215
Period size: 40 Copynumber: 4.5 Consensus size: 40
79594668 TATTCGGATG
* * *
79594678 ATATCCGGGCTAAGTTCCGAAGGCAATT-GTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGC-ATTCGTGCTAGTGACT
* *
79594718 ATATCCGGGCTAAGTCCCGAAGGCATTCTTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACT
* *
79594758 ATATCCGGGCTAAGTCCCGAATGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACT
* * * *
79594798 AGATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAG-TGACT
*
79594838 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79594859 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 16 0.13
40 104 0.85
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACT
Found at i:79596311 original size:27 final size:27
Alignment explanation
Indices: 79596281--79596364 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
79596271 CTGCCAGAAA
* *
79596281 CAGTGAATGTGGCAAAGCCACCAGTAT
1 CAGTGAATGTGACAAAGACACCAGTAT
*
79596308 CAGT-AATTGTGACATAGACACCAGTAT
1 CAGTGAA-TGTGACAAAGACACCAGTAT
* *
79596335 CAGTGAATGCGACATAA-TCACCAGTA-
1 CAGTGAATGTGACA-AAGACACCAGTAT
79596361 CAGT
1 CAGT
79596365 ACTTCCTCCA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 6 0.12
27 39 0.81
28 3 0.06
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
CAGTGAATGTGACAAAGACACCAGTAT
Found at i:79596543 original size:27 final size:26
Alignment explanation
Indices: 79596502--79596615 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
79596492 GGGCATACTA
79596502 GTCA-TTTACCCTACAAGGCCATTACG
1 GTCATTTTACCCTACAAGG-CATTACG
*
79596528 GTCATTTTACCCTACAATGGCATTATG
1 GTCATTTTACCCTACAA-GGCATTACG
* *
79596555 GTCATTTTACCCTACAGAGGCGTTACA
1 GTCATTTTACCCTACA-AGGCATTACG
**
79596582 GTCATTTTACCCTACGGGGGCATTACG
1 GTCATTTTACCCTAC-AAGGCATTACG
79596609 GTCATTT
1 GTCATTT
79596616 CCATCCACTA
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 4 0.05
27 69 0.91
28 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (26 bp):
GTCATTTTACCCTACAAGGCATTACG
Found at i:79596768 original size:20 final size:20
Alignment explanation
Indices: 79596738--79596777 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
79596728 AAAAGACTCA
79596738 GGTGACAAATATGGCCAAAAT
1 GGTGACAAATA-GGCCAAAAT
*
79596759 GGTG-CAAATAGGCCCAAAT
1 GGTGACAAATAGGCCAAAAT
79596778 CCCATTACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17
Consensus pattern (20 bp):
GGTGACAAATAGGCCAAAAT
Found at i:79602647 original size:43 final size:43
Alignment explanation
Indices: 79602586--79602718 Score: 180
Period size: 43 Copynumber: 3.1 Consensus size: 43
79602576 ACGGCATTAC
79602586 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
* * * *
79602629 GCCTGCTGGGCATGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
* * * *
79602672 GCCTGCTAGGCACGAAGGCCTGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
79602713 GCCTGC
1 GCCTGC
79602719 GGGATTTATC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 13 0.17
42 2 0.03
43 63 0.81
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.14
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
Found at i:79602738 original size:38 final size:38
Alignment explanation
Indices: 79602695--79602890 Score: 295
Period size: 38 Copynumber: 5.1 Consensus size: 38
79602685 GAAGGCCTGA
* * *
79602695 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
79602733 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** * *
79602771 ATATTTTACCAGCACGAAGCTTGCGGGTCTTTAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTT-AACCCGG
79602811 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
79602849 ATATAATACCAGCACGAAGCCTGCGGGA-TTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
79602886 ATATA
1 ATATA
79602891 CATCGAATAT
Statistics
Matches: 143, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
37 14 0.10
38 93 0.65
39 6 0.04
40 30 0.21
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:79602820 original size:78 final size:75
Alignment explanation
Indices: 79602695--79602890 Score: 284
Period size: 78 Copynumber: 2.6 Consensus size: 75
79602685 GAAGGCCTGA
* * *
79602695 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGA-TTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
79602760 ATTTAACCCAG
65 ATTTAACCCAG
** * *
79602771 ATATTTTACCAGCACGAAGCTTGCGGGTCTTTAAACCCGGATATAATACCAGCACGAAGCCTGCG
1 ATATAATACCAGCACGAAGCCTGCGGG--ATT-AACCCGGATATAATACCAGCACGAAGCCTGCG
*
79602836 GGATTTAACCCGG
63 GGATTTAACCCAG
79602849 ATATAATACCAGCACGAAGCCTGCGGGATTAACCCGGATATA
1 ATATAATACCAGCACGAAGCCTGCGGGATTAACCCGGATATA
79602891 CATCGAATAT
Statistics
Matches: 105, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
75 12 0.11
76 24 0.23
77 2 0.02
78 67 0.64
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (75 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTAACCCGGATATAATACCAGCACGAAGCCTGCGGGA
TTTAACCCAG
Found at i:79604258 original size:2 final size:2
Alignment explanation
Indices: 79604240--79604272 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
79604230 CACTTTCAAA
*
79604240 AT AT A- AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79604273 TCGACTTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:79605862 original size:27 final size:27
Alignment explanation
Indices: 79605832--79605915 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
79605822 CTGCCAGAAA
* *
79605832 CAGTGAATGTGGCAAAGCCACCAGTAT
1 CAGTGAATGTGACAAAGACACCAGTAT
*
79605859 CAGT-AATTGTGACATAGACACCAGTAT
1 CAGTGAA-TGTGACAAAGACACCAGTAT
* *
79605886 CAGTGAATGCGACATAA-TCACCAGTA-
1 CAGTGAATGTGACA-AAGACACCAGTAT
79605912 CAGT
1 CAGT
79605916 ACTTCCTCCA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 6 0.12
27 39 0.81
28 3 0.06
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
CAGTGAATGTGACAAAGACACCAGTAT
Found at i:79606094 original size:27 final size:26
Alignment explanation
Indices: 79606053--79606166 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
79606043 GGGCATACTA
79606053 GTCA-TTTACCCTACAAGGCCATTACG
1 GTCATTTTACCCTACAAGG-CATTACG
*
79606079 GTCATTTTACCCTACAATGGCATTATG
1 GTCATTTTACCCTACAA-GGCATTACG
* *
79606106 GTCATTTTACCCTACAGAGGCGTTACA
1 GTCATTTTACCCTACA-AGGCATTACG
**
79606133 GTCATTTTACCCTACGGGGGCATTACG
1 GTCATTTTACCCTAC-AAGGCATTACG
79606160 GTCATTT
1 GTCATTT
79606167 CCATCCACTA
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 4 0.05
27 69 0.91
28 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (26 bp):
GTCATTTTACCCTACAAGGCATTACG
Found at i:79606319 original size:20 final size:20
Alignment explanation
Indices: 79606289--79606328 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
79606279 AAAAGACTCA
79606289 GGTGACAAATATGGCCAAAAT
1 GGTGACAAATA-GGCCAAAAT
*
79606310 GGTG-CAAATAGGCCCAAAT
1 GGTGACAAATAGGCCAAAAT
79606329 CCCATTACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17
Consensus pattern (20 bp):
GGTGACAAATAGGCCAAAAT
Found at i:79613837 original size:40 final size:40
Alignment explanation
Indices: 79613777--79613957 Score: 215
Period size: 40 Copynumber: 4.5 Consensus size: 40
79613767 TATTCGGATG
* * *
79613777 ATATCCGGGCTAAGTTCCGAAGGCAATT-GTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGC-ATTCGTGCTAGTGACT
* *
79613817 ATATCCGGGCTAAGTCCCGAAGGCATTCTTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACT
* *
79613857 ATATCCGGGCTAAGTCCCGAATGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACT
* * * *
79613897 AGATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAG-TGACT
*
79613937 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79613958 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 16 0.13
40 104 0.85
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACT
Found at i:79615409 original size:27 final size:27
Alignment explanation
Indices: 79615379--79615462 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
79615369 CTGCCAGAAA
* *
79615379 CAGTGAATGTGGCAAAGCCACCAGTAT
1 CAGTGAATGTGACAAAGACACCAGTAT
*
79615406 CAGT-AATTGTGACATAGACACCAGTAT
1 CAGTGAA-TGTGACAAAGACACCAGTAT
* *
79615433 CAGTGAATGCGACATAA-TCACCAGTA-
1 CAGTGAATGTGACA-AAGACACCAGTAT
79615459 CAGT
1 CAGT
79615463 ACTTCCTCCA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 6 0.12
27 39 0.81
28 3 0.06
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
CAGTGAATGTGACAAAGACACCAGTAT
Found at i:79615641 original size:27 final size:26
Alignment explanation
Indices: 79615600--79615713 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
79615590 GGGCATACTA
79615600 GTCA-TTTACCCTACAAGGCCATTACG
1 GTCATTTTACCCTACAAGG-CATTACG
*
79615626 GTCATTTTACCCTACAATGGCATTATG
1 GTCATTTTACCCTACAA-GGCATTACG
* *
79615653 GTCATTTTACCCTACAGAGGCGTTACA
1 GTCATTTTACCCTACA-AGGCATTACG
**
79615680 GTCATTTTACCCTACGGGGGCATTACG
1 GTCATTTTACCCTAC-AAGGCATTACG
79615707 GTCATTT
1 GTCATTT
79615714 CCATCCACTA
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 4 0.05
27 69 0.91
28 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (26 bp):
GTCATTTTACCCTACAAGGCATTACG
Found at i:79615867 original size:20 final size:20
Alignment explanation
Indices: 79615837--79615876 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
79615827 AAAAGACTCA
79615837 GGTGACAAATATGGCCAAAAT
1 GGTGACAAATA-GGCCAAAAT
*
79615858 GGTG-CAAATAGGCCCAAAT
1 GGTGACAAATAGGCCAAAAT
79615877 CCCATTACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17
Consensus pattern (20 bp):
GGTGACAAATAGGCCAAAAT
Found at i:79621744 original size:43 final size:43
Alignment explanation
Indices: 79621683--79621815 Score: 180
Period size: 43 Copynumber: 3.1 Consensus size: 43
79621673 ACGGCATTAC
79621683 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
* * * *
79621726 GCCTGCTGGGCATGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
* * * *
79621769 GCCTGCTAGGCACGAAGGCCTGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
79621810 GCCTGC
1 GCCTGC
79621816 GGGATTTATC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 13 0.17
42 2 0.03
43 63 0.81
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.14
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAA
Found at i:79621835 original size:38 final size:38
Alignment explanation
Indices: 79621792--79621987 Score: 295
Period size: 38 Copynumber: 5.1 Consensus size: 38
79621782 GAAGGCCTGA
* * *
79621792 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
79621830 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** * *
79621868 ATATTTTACCAGCACGAAGCTTGCGGGTCTTTAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTT-AACCCGG
79621908 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
79621946 ATATAATACCAGCACGAAGCCTGCGGGA-TTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
79621983 ATATA
1 ATATA
79621988 CATCGAATAT
Statistics
Matches: 143, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
37 14 0.10
38 93 0.65
39 6 0.04
40 30 0.21
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:79621917 original size:78 final size:75
Alignment explanation
Indices: 79621792--79621987 Score: 284
Period size: 78 Copynumber: 2.6 Consensus size: 75
79621782 GAAGGCCTGA
* * *
79621792 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGA-TTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
79621857 ATTTAACCCAG
65 ATTTAACCCAG
** * *
79621868 ATATTTTACCAGCACGAAGCTTGCGGGTCTTTAAACCCGGATATAATACCAGCACGAAGCCTGCG
1 ATATAATACCAGCACGAAGCCTGCGGG--ATT-AACCCGGATATAATACCAGCACGAAGCCTGCG
*
79621933 GGATTTAACCCGG
63 GGATTTAACCCAG
79621946 ATATAATACCAGCACGAAGCCTGCGGGATTAACCCGGATATA
1 ATATAATACCAGCACGAAGCCTGCGGGATTAACCCGGATATA
79621988 CATCGAATAT
Statistics
Matches: 105, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
75 12 0.11
76 24 0.23
77 2 0.02
78 67 0.64
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (75 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTAACCCGGATATAATACCAGCACGAAGCCTGCGGGA
TTTAACCCAG
Found at i:79623354 original size:2 final size:2
Alignment explanation
Indices: 79623336--79623368 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
79623326 CACTTTCAAA
*
79623336 AT AT A- AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79623369 TCGACTTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:79629128 original size:2 final size:2
Alignment explanation
Indices: 79629121--79629149 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
79629111 ATTTTATTTC
79629121 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79629150 CATTGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79630340 original size:131 final size:132
Alignment explanation
Indices: 79630097--79630351 Score: 289
Period size: 131 Copynumber: 1.9 Consensus size: 132
79630087 GTTTCACAAT
* * * * ** *
79630097 TATTAAAAATCCTTTAAAACGAAGGTGATATTCGATACTCGGTAATTCGTGGAATCGTACCCTAA
1 TATTAAAAATCCCTTAAAACAAAGGCGATATTCGATACTCGGCAATTCACGGAATCGTAACCTAA
* * * * * * *
79630162 CGTGTTGGGTTGCAATTCCTTGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCACG
66 CGTGCTGGGTTGCAATTCCTCGTTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCACG
79630227 GC
131 GC
* * *
79630229 TATTAAAAATCCCTT-AAACAAAGGCGATATGT-GATATTTGGCAATTCACGGAATTGTAACCTA
1 TATTAAAAATCCCTTAAAACAAAGGCGATAT-TCGATACTCGGCAATTCACGGAATCGTAACCTA
* * * * *
79630292 GCGTGCTGGGTTGCAATTTCTCGTTTGCTTAAAATAATTAAATATCCCTTCAAAATTTCA
65 ACGTGCTGGGTTGCAATTCCTCGTTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCA
79630352 TTCGTGTCTT
Statistics
Matches: 100, Mismatches: 22, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
131 85 0.85
132 15 0.15
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (132 bp):
TATTAAAAATCCCTTAAAACAAAGGCGATATTCGATACTCGGCAATTCACGGAATCGTAACCTAA
CGTGCTGGGTTGCAATTCCTCGTTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCACG
GC
Found at i:79630467 original size:131 final size:127
Alignment explanation
Indices: 79630288--79630625 Score: 318
Period size: 129 Copynumber: 2.6 Consensus size: 127
79630278 GGAATTGTAA
* * ** * *
79630288 CCTAGCGTGCTGGGTTGCAATTTCTCGTTTGCTTAAAATAATTAAATATCCCTTCAAAATTTCAT
1 CCTATCGTGCTGGGTTG-AATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAGAATTTCAC
* *
79630353 TCGTGTCTTCTAAAAATCCGTT-AAAACGAAGGCAATATTTGGTGTTTGACAATTCGAGAATCAT
65 TCGTGT-TTCTAAAAA-CCGTTCAAAAC-AAGG-AATATTCGATGTTTGACAATTCGAGAATCAT
79630417 GC
126 GC
* * * * **
79630419 CCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCAC
1 CCTATCGTGCTGGGTTG-AATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAGAATTTCAC
* * * * * * * * *
79630484 TCATGTTTGTTAAAAACCTTTCAAAACAAGGGATGTTCGATTTTTGGCAATTTGAGAATCGTGC
65 TCGTGTTT-CTAAAAACCGTTCAAAACAAGGAATATTCGATGTTTGACAATTCGAGAATCATGC
* * * * * *
79630548 CCTATCGTGCTGGGTTGCACTTTTTCATTTGTTCTAAATAATCGAATATCCCTTCTGAATTTCAC
1 CCTATCGTGCTGGGTTG-AATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAGAATTTCAC
*
79630613 TCGTATTTTCTAA
65 TCGT-GTTTCTAA
79630626 GGTGAGGCAA
Statistics
Matches: 164, Mismatches: 40, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
129 83 0.51
130 13 0.08
131 68 0.41
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (127 bp):
CCTATCGTGCTGGGTTGAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAGAATTTCACT
CGTGTTTCTAAAAACCGTTCAAAACAAGGAATATTCGATGTTTGACAATTCGAGAATCATGC
Found at i:79642185 original size:44 final size:44
Alignment explanation
Indices: 79642110--79642819 Score: 870
Period size: 44 Copynumber: 16.2 Consensus size: 44
79642100 GGCAAATCCT
* * * *
79642110 GCAGATTTGGCATCTCTATGTTGACAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
79642154 GTAGATTTGGCGTCTCTGTATTGGC-GAAGAGCAGATTGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAG-AGAGCAGATCGAAGATA
* ** * * *
79642198 GTAGATTTGGAATCTCTGTATTGACAGGGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
79642242 GCAGATTTGGTGTCTCTGTATTGTCAAAGGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* **
79642286 GCAGATTTGGCATCTCTGTATTGTTAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
** *
79642330 GCAGATTTGGCGTCTCTGTATTGGTGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
79642374 GCAGATTTGGCATCTCTGTGTTGACAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
79642418 GCAGATTTGGCGTTTCTGTATTGACAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
79642462 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * * *
79642506 GCAGATTTGGCATCTCTGTGTTGACAAAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * * *
79642550 GTAGATTTGGCATCTCTGTGTTGACAGAGAGCAGACCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
79642594 GCAG-TTTGGTGTCTCTGTATTGACAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
79642637 ACAGATTTGGCGTCTCTGTATTGGCAGGGAGCGGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
79642681 GCAGATTTGGCGTCTCTGTATTGTCAGA-AGACAGATCGAGGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAG-CAGATCGAAGATA
* * ** *
79642725 GCAGATTTGGCATCTCTGTGTTGATAGAGAGCAAATCGAAGAT-
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
79642768 GACAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAAATA
1 G-CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
79642813 ACAGATT
1 GCAGATT
79642820 GGTGTTCCCG
Statistics
Matches: 580, Mismatches: 79, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
43 42 0.07
44 535 0.92
45 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (44 bp):
GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
Found at i:79644422 original size:28 final size:25
Alignment explanation
Indices: 79644390--79644455 Score: 60
Period size: 28 Copynumber: 2.4 Consensus size: 25
79644380 TGTATTTACG
79644390 AATTATCCTTCCATTTTAACGTGATTTC
1 AATTATCCTTCC--TTT-ACGTGATTTC
* *
79644418 AATTAGGCCCTCTCCTTTATGTGATTTC
1 AATTA--TCCT-TCCTTTACGTGATTTC
79644446 AATTATCCTT
1 AATTATCCTT
79644456 TTTTTAGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
25 1 0.03
26 3 0.09
28 19 0.59
29 3 0.09
30 3 0.09
31 3 0.09
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (25 bp):
AATTATCCTTCCTTTACGTGATTTC
Found at i:79644662 original size:2 final size:2
Alignment explanation
Indices: 79644655--79644689 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
79644645 ATTTTATTTC
79644655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79644690 CATTGTTAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:79645910 original size:131 final size:131
Alignment explanation
Indices: 79645775--79646010 Score: 294
Period size: 131 Copynumber: 1.8 Consensus size: 131
79645765 CCACGACTAT
* * * **
79645775 TAAAAATCCCTT-AAACTAAGGCGATATGTGATATTTGGCAATTCACGGAATTGTGCCCTAGCGT
1 TAAAAATCCCTTAAAACGAAGGCAATATGTGATATTTGACAATT-ACGGAATCATGCCCTAGCGT
* *
79645839 GCTGGGTTGCAATTTCTCATTTGCTTAAAATAATCAAATATCCCTTCAAAATTTTGTTCGTGTCT
65 GCTGGGTTGCAATTTCTCATTTGCTCAAAACAATCAAATATCCCTTCAAAATTTTGTTCGTGTCT
79645904 TC
130 TC
* * * * ** *
79645906 TAAAAATCCGTTAAAACGAAGGCAATATTTGGTGTTTGACAATTTGGGAATCATGCCCTATCGTG
1 TAAAAATCCCTTAAAACGAAGGCAATATGTGATATTTGACAATTACGGAATCATGCCCTAGCGTG
** * *
79645971 CTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATAT
66 CTGGGTTGCAATTTCTCATTTGCTCAAAACAATCAAATAT
79646011 TCTTTTAGGT
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
131 61 0.71
132 25 0.29
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (131 bp):
TAAAAATCCCTTAAAACGAAGGCAATATGTGATATTTGACAATTACGGAATCATGCCCTAGCGTG
CTGGGTTGCAATTTCTCATTTGCTCAAAACAATCAAATATCCCTTCAAAATTTTGTTCGTGTCTT
C
Found at i:79647876 original size:27 final size:27
Alignment explanation
Indices: 79647846--79647910 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
79647836 CCCCAAAATA
*
79647846 GGTAAAATGATAGTAATACCCCTGTAG
1 GGTAAAATGACAGTAATACCCCTGTAG
* *
79647873 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACAGTAATACCCCTGTAG
79647900 GGTAAAATGAC
1 GGTAAAATGAC
79647911 GATTATGCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACAGTAATACCCCTGTAG
Found at i:79648090 original size:27 final size:26
Alignment explanation
Indices: 79648046--79648096 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
79648036 ATGGAGGAAG
*
79648046 TACTGTACTGGTGACTATGTCACATT
1 TACTGTACTGGTGACTATGCCACATT
*
79648072 TACTGTTACTGGTGGCTATGCCACA
1 TACTG-TACTGGTGACTATGCCACA
79648097 ACTGCTGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (26 bp):
TACTGTACTGGTGACTATGCCACATT
Found at i:79648108 original size:27 final size:27
Alignment explanation
Indices: 79648046--79648115 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
79648036 ATGGAGGAAG
* * **
79648046 TACTG-TACTGGTGACTATGTCACATT
1 TACTGATACTGGTGGCTATGCCACAAC
*
79648072 TACTGTTACTGGTGGCTATGCCACAAC
1 TACTGATACTGGTGGCTATGCCACAAC
* *
79648099 TGCTGATACTAGTGGCT
1 TACTGATACTGGTGGCT
79648116 TTACCACATT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 5 0.14
27 31 0.86
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.34
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACAAC
Found at i:79649610 original size:2 final size:2
Alignment explanation
Indices: 79649603--79649631 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
79649593 GAGACTAGTC
79649603 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79649632 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79651023 original size:184 final size:188
Alignment explanation
Indices: 79650799--79651182 Score: 605
Period size: 197 Copynumber: 2.0 Consensus size: 188
79650789 TCCTTCACTT
*
79650799 GGAACCACGCATGCGACCTAGCTACATATATCCTGTAGCTCTCTTG-T-C-T-ATAGTATCACCC
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGCTACGTAATAGTATCACCC
*
79650860 ATGTGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAGCACTA
66 ATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAGCACTA
*
79650925 TACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAACCG
131 TACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAACCG
79650983 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTG-CTAC-----GT--A-ATA
79651048 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
57 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
* *
79651113 TCAGCACTATACATGTGACCTAGCTACATCCCATCTATATCATCCAATCTTTCTGAAGGTTCAAC
122 TCAGCACTATACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAAC
*
79651178 TG
187 CG
79651180 GGA
1 GGA
79651183 TTTCTCTCTC
Statistics
Matches: 181, Mismatches: 6, Indels: 13
0.90 0.03 0.06
Matches are distributed among these distances:
184 45 0.25
186 1 0.01
187 1 0.01
193 1 0.01
197 133 0.73
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (188 bp):
GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGCTACGTAATAGTATCACCC
ATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCACTCAGCACTA
TACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAACCG
Found at i:79651841 original size:30 final size:30
Alignment explanation
Indices: 79651807--79651867 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79651797 TCATTAACTC
79651807 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
79651837 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
79651867 A
1 A
79651868 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:79657652 original size:27 final size:27
Alignment explanation
Indices: 79657617--79657683 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
79657607 AACCCCAAAA
*
79657617 TAGA-TAAAATGGCCGTAATACCCCTG
1 TAGAGTAAAATGACCGTAATACCCCTG
* *
79657643 TAGAGTAAAATGACTGTAATACCCTTG
1 TAGAGTAAAATGACCGTAATACCCCTG
79657670 TATG-GTAAAATGAC
1 TA-GAGTAAAATGAC
79657684 GATTATGCCC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.11
27 31 0.86
28 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.27
Consensus pattern (27 bp):
TAGAGTAAAATGACCGTAATACCCCTG
Found at i:79660083 original size:44 final size:43
Alignment explanation
Indices: 79660028--79660186 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
79660018 TATGTGTTAT
* * *
79660028 CATGCAAGACCACGTCTAGGACATTGGTATCGATTTGTGATTTA
1 CATGTAAGACCACATCTAGGACATTGGCATCGATTT-TGATTTA
** * * *
79660072 CATGTAAGACCATGTCTAGAACATTGGCGTCG-TATATGATTT-
1 CATGTAAGACCACATCTAGGACATTGGCATCGAT-TTTGATTTA
* * * *
79660114 CGTGTAAGACC-CTATCTGGGACAATAGCATCGATATTTGA-TTA
1 CATGTAAGACCAC-ATCTAGGACATTGGCATCGAT-TTTGATTTA
* *
79660157 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CATGTAAGACCACATCTAGGACATTGGCAT
79660187 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 25 0.27
43 37 0.41
44 29 0.32
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACATCTAGGACATTGGCATCGATTTTGATTTA
Found at i:79660588 original size:94 final size:94
Alignment explanation
Indices: 79660480--79660668 Score: 378
Period size: 94 Copynumber: 2.0 Consensus size: 94
79660470 ACTGAGTATA
79660480 AATGATGATATGAGATTTATGTATACGTATATACGATTAGATGTGTTATTTCCATAATGTGCTCA
1 AATGATGATATGAGATTTATGTATACGTATATACGATTAGATGTGTTATTTCCATAATGTGCTCA
79660545 TTTGGATATACGAAAGTGTGAATTGAATG
66 TTTGGATATACGAAAGTGTGAATTGAATG
79660574 AATGATGATATGAGATTTATGTATACGTATATACGATTAGATGTGTTATTTCCATAATGTGCTCA
1 AATGATGATATGAGATTTATGTATACGTATATACGATTAGATGTGTTATTTCCATAATGTGCTCA
79660639 TTTGGATATACGAAAGTGTGAATTGAATG
66 TTTGGATATACGAAAGTGTGAATTGAATG
79660668 A
1 A
79660669 TATAGGAAAA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 95 1.00
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.38
Consensus pattern (94 bp):
AATGATGATATGAGATTTATGTATACGTATATACGATTAGATGTGTTATTTCCATAATGTGCTCA
TTTGGATATACGAAAGTGTGAATTGAATG
Found at i:79668562 original size:53 final size:53
Alignment explanation
Indices: 79668505--79668675 Score: 220
Period size: 53 Copynumber: 3.2 Consensus size: 53
79668495 AGGGGCAAAA
* * * *
79668505 TGGTAATTTTACCCCACAAGGGT-TCTCGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTAT-TCGGTAATTCTACCCTACAGGGGTATTT
* *
79668558 TGGTAATTCTATCCTATAGGGGTATTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTCGGTAATTCTACCCTACAGGGGTATTT
** *
79668611 TAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACA-GGGTATTT
1 TGGTAATTCTACCCTACAGGGGTA-TTCGGTAATTCTACCCTACAGGGGTATTT
*
79668664 CGGTAATTCTAC
1 TGGTAATTCTAC
79668676 AACTTATCCA
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 82 0.80
54 20 0.20
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (53 bp):
TGGTAATTCTACCCTACAGGGGTATTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:79668573 original size:27 final size:27
Alignment explanation
Indices: 79668506--79668675 Score: 211
Period size: 27 Copynumber: 6.4 Consensus size: 27
79668496 GGGGCAAAAT
* * * *
79668506 GGTAATTTTACCCCACAAGGGT-TCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
79668532 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
79668559 GGTAATTCTATCCTATAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79668585 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
**
79668612 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79668639 GGTAATTCTACCTTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79668665 GGTAATTCTAC
1 GGTAATTCTAC
79668676 AACTTATCCA
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 61 0.50
27 62 0.50
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:79673551 original size:40 final size:40
Alignment explanation
Indices: 79673466--79673616 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
79673456 AATTGAATGA
* * *
79673466 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
79673506 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
79673547 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
79673586 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
79673617 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:79673630 original size:40 final size:40
Alignment explanation
Indices: 79673502--79673632 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
79673492 TATGCTGGAA
* * *
79673502 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
79673542 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
79673582 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
79673622 ATTATATCCGG
1 ATTATATCCGG
79673633 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:79678061 original size:26 final size:27
Alignment explanation
Indices: 79678032--79678082 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
79678022 CACAAGTTAG
*
79678032 TCATTT-ACGCACGAGGGGCAAAATAA
1 TCATTTAACACACGAGGGGCAAAATAA
* *
79678058 TCATTTAACACCCTAGGGGCAAAAT
1 TCATTTAACACACGAGGGGCAAAAT
79678083 GGTAAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
TCATTTAACACACGAGGGGCAAAATAA
Found at i:79678121 original size:27 final size:27
Alignment explanation
Indices: 79678087--79678255 Score: 153
Period size: 27 Copynumber: 6.3 Consensus size: 27
79678077 CAAAATGGTA
* *
79678087 AATT-TACCCCACAAGGGTATCTCGAT
1 AATTCTACCCTACAAGGGTATTTCGAT
* *
79678113 AATTCTACCCTATATGGGTATTTC-AGT
1 AATTCTACCCTACAAGGGTATTTCGA-T
* * *
79678140 AATTCTATCCTATAGGGGTATTTCGAT
1 AATTCTACCCTACAAGGGTATTTCGAT
* * **
79678167 AATTCTACCCTACAGGGGAATTTTAAT
1 AATTCTACCCTACAAGGGTATTTCGAT
* * *
79678194 CATTCTACCCTACAAGGGTGTTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGAT
* * * *
79678221 AATTCTACCTTAGAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGAT
79678248 AATTCTAC
1 AATTCTAC
79678256 AACTTATCCA
Statistics
Matches: 117, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.04
27 111 0.95
28 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
AATTCTACCCTACAAGGGTATTTCGAT
Found at i:79678160 original size:54 final size:54
Alignment explanation
Indices: 79678087--79678255 Score: 187
Period size: 54 Copynumber: 3.1 Consensus size: 54
79678077 CAAAATGGTA
* * * *
79678087 AATT-TACCCCACAAGGGTATCTCGATAATTCTACCCTATATGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
* * * * * *
79678140 AATTCTATCCTATAGGGGTATTTCGATAATTCTACCCTACAGGGGAATTTTAAT
1 AATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
* * * * * *
79678194 CATTCTACCCTACAAGGGTGTTTCGGTAATTCTACCTTAGAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
79678248 AATTCTAC
1 AATTCTAC
79678256 AACTTATCCA
Statistics
Matches: 92, Mismatches: 23, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
53 4 0.04
54 88 0.96
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
AATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
Found at i:79679492 original size:42 final size:43
Alignment explanation
Indices: 79679373--79679542 Score: 162
Period size: 43 Copynumber: 3.9 Consensus size: 43
79679363 TTGGATTCCA
* * * *
79679373 ATATGAGTTATCGTGTAAGACCATGTCTGGGACGTTGGCATCAAT
1 ATATGA-TT-TCGTGTAAGACCATATCTAGGACATTGGCATCGAT
* * * *
79679418 TTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCATCG-T
1 ATATGATTT-CGTGTAAGACCATATCTAGGACATTGGCATCGAT
* * * *
79679461 ATATGATTTCGTGTAAAACCCTATCTTGGACAGTGGCATCGAT
1 ATATGATTTCGTGTAAGACCATATCTAGGACATTGGCATCGAT
* * * *
79679504 ATTTGATTTCATGTAAGATCATATCTAGGACGTTGGCAT
1 ATATGATTTCGTGTAAGACCATATCTAGGACATTGGCAT
79679543 TGTACGAGCT
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
42 27 0.26
43 41 0.39
44 32 0.31
45 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
ATATGATTTCGTGTAAGACCATATCTAGGACATTGGCATCGAT
Done.