Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 257 of 438
Found at i:79679511 original size:86 final size:87
Alignment explanation
Indices: 79679373--79679542 Score: 195
Period size: 86 Copynumber: 2.0 Consensus size: 87
79679363 TTGGATTCCA
* * *
79679373 ATATGAGTTATCGTGTAAGACCATGTCTGGGACGTTGGCATCAATTTGTGATTTACGTGTAAGAC
1 ATATGAGTTATCGTGTAAAACCATATCTGGGACGTTGGCATCAATTTGTGATTT-CATGTAAGAC
* *
79679438 CATGTCTGGGACATTGGCATCGT
65 CATATCTAGGACATTGGCATCGT
* * *
79679461 ATATGA-TT-TCGTGTAAAACCCTATCTTGGACAG-TGGCATCGATATT-TGATTTCATGTAAGA
1 ATATGAGTTATCGTGTAAAACCATATCTGGGAC-GTTGGCATCAAT-TTGTGATTTCATGTAAGA
* *
79679522 TCATATCTAGGACGTTGGCAT
64 CCATATCTAGGACATTGGCAT
79679543 TGTACGAGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
85 25 0.36
86 34 0.49
87 5 0.07
88 6 0.09
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (87 bp):
ATATGAGTTATCGTGTAAAACCATATCTGGGACGTTGGCATCAATTTGTGATTTCATGTAAGACC
ATATCTAGGACATTGGCATCGT
Found at i:79684508 original size:13 final size:13
Alignment explanation
Indices: 79684457--79684510 Score: 74
Period size: 13 Copynumber: 4.2 Consensus size: 13
79684447 CCAAAATAAG
79684457 GTCACACGCCTC-T
1 GTCACACGCC-CGT
*
79684470 GTCACACTCCCGT
1 GTCACACGCCCGT
*
79684483 GTCACACGTCCGT
1 GTCACACGCCCGT
79684496 GTCACACGCCCGT
1 GTCACACGCCCGT
79684509 GT
1 GT
79684511 GGCCAAGCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
12 1 0.03
13 35 0.97
ACGTcount: A:0.15, C:0.43, G:0.20, T:0.22
Consensus pattern (13 bp):
GTCACACGCCCGT
Found at i:79686987 original size:35 final size:35
Alignment explanation
Indices: 79686932--79686999 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
79686922 CTCATTTCAA
*
79686932 GATTACCCATTCGGGCTAAATCCTTTCTATAATTG
1 GATTACCCATTCGGGATAAATCCTTTCTATAATTG
* *
79686967 GATTGCCCATTTGGGATAAATCCTTTCTATAAT
1 GATTACCCATTCGGGATAAATCCTTTCTATAAT
79687000 GAGATTAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (35 bp):
GATTACCCATTCGGGATAAATCCTTTCTATAATTG
Found at i:79695522 original size:38 final size:38
Alignment explanation
Indices: 79695479--79695636 Score: 163
Period size: 38 Copynumber: 3.9 Consensus size: 38
79695469 TTTCAAATTA
*
79695479 ACATGTATAACCGTGGCATATCCACTTAGCACTACATT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
* * *
79695517 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC----AT-T
* *
79695560 ATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACATT
* *
79695602 ACATGTTTAACCGTGGTATATCCACTTAGCACCAC
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC
79695637 GTTAATGAAT
Statistics
Matches: 99, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
38 59 0.60
40 3 0.03
41 1 0.01
42 3 0.03
43 2 0.02
44 1 0.01
45 3 0.03
47 27 0.27
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
Found at i:79695578 original size:47 final size:47
Alignment explanation
Indices: 79695524--79695783 Score: 331
Period size: 48 Copynumber: 5.7 Consensus size: 47
79695514 ATTACATGTT
79695524 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
79695571 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
79695609 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
79695656 TAACCGTGGCATATCCACTTAGCACCACGTTACACGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* * * * *
79695704 TAATCGTGGTATATCCATTTAGCACCATGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
79695752 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGTATATCCACTTAGCACCACGTTA
79695784 CACGTATAAC
Statistics
Matches: 188, Mismatches: 15, Indels: 19
0.85 0.07 0.09
Matches are distributed among these distances:
38 28 0.15
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 59 0.31
48 85 0.45
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:79695578 original size:85 final size:85
Alignment explanation
Indices: 79695486--79695820 Score: 445
Period size: 85 Copynumber: 3.8 Consensus size: 85
79695476 TTAACATGTA
*
79695486 TAACCGTGGCATATCCACTTAGCACTACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
79695551 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
79695571 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
79695636 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * *
79695656 TAACCGTGGCATATCCACTTAGCACCACGTTACACGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCA-C-C---ACA--T-T--ACATGTTTAACCGTGGTATATCCA
* * * *
79695721 TTTAGCACCATGTTACATGTATCAATATGTG
56 CTTAGCACCACGTTA-ATGAATCAATATATG
* * * * *
79695752 TAATCGTGGTATATCCACTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
79695817 CGTT
66 CGTT
79695821 TTTCCGTTCC
Statistics
Matches: 220, Mismatches: 19, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
85 107 0.49
86 33 0.15
87 1 0.00
88 1 0.00
89 1 0.00
90 2 0.01
91 2 0.01
92 1 0.00
93 1 0.00
94 1 0.00
95 35 0.16
96 35 0.16
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:79695637 original size:38 final size:38
Alignment explanation
Indices: 79695571--79695820 Score: 149
Period size: 38 Copynumber: 5.8 Consensus size: 38
79695561 TCAATATATG
*
79695571 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTT
*
79695609 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATAT
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-C-ATGT-T
* *
79695655 GTAACCGTGGCATATCCACTTAGCACCACGTTACACGTATCAATATGTG
1 -TAACCGTGGTATATCCACTTAGCACCACG-T-----TA-C---ATGTT
* * *
79695704 TAATCGTGGTATATCCATTTAGCACCATGTTACATGTATCAATATGT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATG--------T-T
* * *
79695751 GTAATCGTGGTATATCCACTTAGCACCACGTTACACGTA
1 -TAACCGTGGTATATCCACTTAGCACCACGTTACATGTT
79695790 TAACCGTGGTATATCCACTTAGCACCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
79695821 TTTCCGTTCC
Statistics
Matches: 170, Mismatches: 18, Indels: 48
0.72 0.08 0.20
Matches are distributed among these distances:
38 61 0.36
39 1 0.01
40 1 0.01
41 2 0.01
42 2 0.01
43 1 0.01
44 1 0.01
45 3 0.02
46 2 0.01
47 31 0.18
48 61 0.36
50 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (38 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTT
Found at i:79702303 original size:56 final size:56
Alignment explanation
Indices: 79702232--79702340 Score: 209
Period size: 56 Copynumber: 1.9 Consensus size: 56
79702222 ATTTTGGTGG
*
79702232 AGATTATTCTGTAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATTGGA
1 AGATTATTCTATAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATTGGA
79702288 AGATTATTCTATAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATT
1 AGATTATTCTATAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATT
79702341 AGAGGCTTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (56 bp):
AGATTATTCTATAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATTGGA
Found at i:79705047 original size:21 final size:21
Alignment explanation
Indices: 79704996--79705037 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79704986 AAATAAAGCC
79704996 AAAATCAGCCATTTTTCTCCT
1 AAAATCAGCCATTTTTCTCCT
79705017 AAAATCAGCCATTTTTCTCCT
1 AAAATCAGCCATTTTTCTCCT
79705038 TCATCCAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATCAGCCATTTTTCTCCT
Found at i:79706436 original size:24 final size:24
Alignment explanation
Indices: 79706404--79706452 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
79706394 TATGGATGTA
79706404 TGCTAATTACTCAGAAAGTTTACT
1 TGCTAATTACTCAGAAAGTTTACT
79706428 TGCTAATTACTCAGAAAGTTTACT
1 TGCTAATTACTCAGAAAGTTTACT
79706452 T
1 T
79706453 TCTGGTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (24 bp):
TGCTAATTACTCAGAAAGTTTACT
Found at i:79712754 original size:46 final size:47
Alignment explanation
Indices: 79712699--79712833 Score: 179
Period size: 46 Copynumber: 2.9 Consensus size: 47
79712689 TAGGATGGTT
79712699 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-C
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAC
* * *
79712745 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--AC
*
79712791 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79712834 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
43 4 0.05
45 2 0.03
46 35 0.47
47 31 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (47 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAC
Found at i:79717620 original size:15 final size:15
Alignment explanation
Indices: 79717600--79717645 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
79717590 TTAAATTTAG
*
79717600 TATTTACTTTTTCAA
1 TATTTAATTTTTCAA
*
79717615 TATTTAAATTTTCAGA
1 TATTTAATTTTTCA-A
79717631 TA-TTAATTTTTCAA
1 TATTTAATTTTTCAA
79717645 T
1 T
79717646 TTACCGAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 2 0.07
15 22 0.81
16 3 0.11
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.57
Consensus pattern (15 bp):
TATTTAATTTTTCAA
Found at i:79717810 original size:15 final size:15
Alignment explanation
Indices: 79717792--79717822 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
79717782 TGTTTGATAA
79717792 ATTGAAAATTTAAGT
1 ATTGAAAATTTAAGT
79717807 ATTGAAAATTTAAGT
1 ATTGAAAATTTAAGT
79717822 A
1 A
79717823 CTGGATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (15 bp):
ATTGAAAATTTAAGT
Found at i:79720337 original size:2 final size:2
Alignment explanation
Indices: 79720330--79720355 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
79720320 TTCATTCAGC
79720330 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
79720356 GAAAATTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79722253 original size:18 final size:17
Alignment explanation
Indices: 79722219--79722264 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
79722209 ACATTTAATT
79722219 AATATTTTAAAATTTAA
1 AATATTTTAAAATTTAA
79722236 AATACTTTTATAAA-TT-A
1 AATA-TTTTA-AAATTTAA
79722253 AATAATTTTAAA
1 AAT-ATTTTAAA
79722265 TAATTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
16 2 0.08
17 13 0.50
18 8 0.31
19 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATATTTTAAAATTTAA
Found at i:79722269 original size:18 final size:17
Alignment explanation
Indices: 79722222--79722269 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
79722212 TTTAATTAAT
*
79722222 ATTTTAAAATTTAAAATA
1 ATTTTAAAAATT-AAATA
* *
79722240 CTTTTATAAATTAAATA
1 ATTTTAAAAATTAAATA
79722257 ATTTTAAATAATT
1 ATTTTAAA-AATT
79722270 TTTTTAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTTTAAAAATTAAATA
Found at i:79723593 original size:10 final size:10
Alignment explanation
Indices: 79723578--79723603 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
79723568 AGATAATAAT
79723578 AAAATATTTA
1 AAAATATTTA
79723588 AAAATATTTA
1 AAAATATTTA
79723598 AAAATA
1 AAAATA
79723604 ATAAGATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATATTTA
Found at i:79723600 original size:39 final size:39
Alignment explanation
Indices: 79723556--79723631 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
79723546 TAAATAATTA
79723556 TTAAAAATAATAAGATAATAATAAAATATTTAAAAATAT
1 TTAAAAATAATAAGATAATAATAAAATATTTAAAAATAT
79723595 TTAAAAATAATAAGATAATAATAAAATATTTAAAAAT
1 TTAAAAATAATAAGATAATAATAAAATATTTAAAAAT
79723632 TATTAAGGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (39 bp):
TTAAAAATAATAAGATAATAATAAAATATTTAAAAATAT
Found at i:79724522 original size:11 final size:11
Alignment explanation
Indices: 79724446--79724529 Score: 60
Period size: 12 Copynumber: 7.0 Consensus size: 11
79724436 ATTTTTTTCT
*
79724446 TTTTATTTCTA
1 TTTTATTTTTA
*
79724457 TTTCTATTTTTC
1 TTT-TATTTTTA
*
79724469 TTGTTATTTTTG
1 TT-TTATTTTTA
79724481 TTTTATATTTTACA
1 TTTTAT-TTTT--A
* *
79724495 CTTATATGTTCTA
1 -TTTTAT-TTTTA
79724508 TTTTATTTTTA
1 TTTTATTTTTA
79724519 TTTTATTTTTA
1 TTTTATTTTTA
79724530 CTGTTATTGT
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
11 22 0.38
12 26 0.45
13 2 0.03
15 8 0.14
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:79724704 original size:2 final size:2
Alignment explanation
Indices: 79724697--79724735 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
79724687 AGCAATTTCA
79724697 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
79724736 TAAATATTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:79742479 original size:59 final size:60
Alignment explanation
Indices: 79742383--79742515 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
79742373 GACAAGATTG
* * *
79742383 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
79742443 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
79742502 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79742516 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:79742528 original size:29 final size:29
Alignment explanation
Indices: 79742413--79742515 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
79742403 AAAATTGTAC
*
79742413 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
79742442 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
79742472 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
79742501 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79742516 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:79750488 original size:59 final size:60
Alignment explanation
Indices: 79750392--79750524 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
79750382 GACAAGATTG
* * *
79750392 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
79750452 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
79750511 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79750525 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:79750537 original size:29 final size:29
Alignment explanation
Indices: 79750422--79750524 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
79750412 AAAATTGTAC
*
79750422 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
79750451 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
79750481 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
79750510 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79750525 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:79752432 original size:24 final size:25
Alignment explanation
Indices: 79752405--79752452 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
79752395 AAAAAATAAA
79752405 ATACATGTGTAATAAATAT-TGTAC
1 ATACATGTGTAATAAATATATGTAC
* *
79752429 ATACATTTGTAATACATATATGTA
1 ATACATGTGTAATAAATATATGTA
79752453 TTTACTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (25 bp):
ATACATGTGTAATAAATATATGTAC
Found at i:79752682 original size:15 final size:15
Alignment explanation
Indices: 79752658--79752686 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
79752648 GAAATAAAAG
79752658 AAAGAAATAGAATGA
1 AAAGAAATAGAATGA
79752673 AAAGAAATAGAATG
1 AAAGAAATAGAATG
79752687 TGGAACGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.21, T:0.14
Consensus pattern (15 bp):
AAAGAAATAGAATGA
Found at i:79752727 original size:17 final size:19
Alignment explanation
Indices: 79752707--79752744 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
79752697 CAGGGGAAGG
79752707 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
79752724 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
79752743 AA
1 AA
79752745 TTAAAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:79753364 original size:3 final size:3
Alignment explanation
Indices: 79753356--79753400 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
79753346 GAATGGTAAG
*
79753356 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
79753401 GGTATTGAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:79755211 original size:16 final size:15
Alignment explanation
Indices: 79755185--79755214 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
79755175 ACTAGATCGG
79755185 CAAAAGCCGAAAAGT
1 CAAAAGCCGAAAAGT
79755200 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
79755215 CCAGCATCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.20, G:0.20, T:0.07
Consensus pattern (15 bp):
CAAAAGCCGAAAAGT
Found at i:79755962 original size:60 final size:60
Alignment explanation
Indices: 79755891--79756025 Score: 152
Period size: 60 Copynumber: 2.2 Consensus size: 60
79755881 CTATGTTAAT
*
79755891 ATGGG-TAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTGAC
1 ATGGGCTAAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTGAC
* * * * *
79755951 ATGGGCT-AGGCCCAGTATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTGAT
1 ATGGGCTAAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTGAC
79756011 ATGGGCTAAGGCCCA
1 ATGGGCTAAGGCCCA
79756026 GTTAACTTTG
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
59 1 0.02
60 47 0.73
61 16 0.25
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (60 bp):
ATGGGCTAAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTGAC
Found at i:79757031 original size:18 final size:18
Alignment explanation
Indices: 79756974--79757050 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 18
79756964 GACTGTCTAC
* *
79756974 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* *
79756992 TACAGAATAAAAGACTGA-
1 TACTGAATAAATGACT-AT
*
79757010 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
* * *
79757028 TACTGATTAACTGATTAT
1 TACTGAATAAATGACTAT
79757046 TACTG
1 TACTG
79757051 TTGACTGACT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
17 1 0.02
18 46 0.98
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:79762023 original size:43 final size:42
Alignment explanation
Indices: 79761913--79762024 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
79761903 TGATTTACGA
* *
79761913 GTAAGACCATGTCTAGGACATTGACATCATATATGATTTCAT
1 GTAAGACCATGTCTAGGACATTGGCATCATATATGATTACAT
* * * * *
79761955 GTAAGACCCTGTCTGGGA-TTGTGGCATCGATATTTTATTACAT
1 GTAAGACCATGTCTAGGACAT-TGGCATC-ATATATGATTACAT
*
79761998 GTAAGACCATGTCTTGGACATTGGCAT
1 GTAAGACCATGTCTAGGACATTGGCAT
79762025 TGTATGATCT
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 22 0.39
43 33 0.58
44 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (42 bp):
GTAAGACCATGTCTAGGACATTGGCATCATATATGATTACAT
Found at i:79765919 original size:18 final size:18
Alignment explanation
Indices: 79765875--79765913 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
79765865 GAAAACCAAA
79765875 AAGCTTAAAGACTTATCT
1 AAGCTTAAAGACTTATCT
79765893 AAGCTTAAAGACTTATCT
1 AAGCTTAAAGACTTATCT
79765911 AAG
1 AAG
79765914 TCTAAATGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (18 bp):
AAGCTTAAAGACTTATCT
Found at i:79775169 original size:27 final size:27
Alignment explanation
Indices: 79775147--79775197 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
79775137 AAAAAAAATT
*
79775147 ATTAA-TAATTCAAT-GAATTAAAAAA
1 ATTAATTAATTCAATAAAATTAAAAAA
*
79775172 ATTAATTAATTGAATAAAATTAAAAA
1 ATTAATTAATTCAATAAAATTAAAAA
79775198 TTAAGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 8 0.36
27 9 0.41
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (27 bp):
ATTAATTAATTCAATAAAATTAAAAAA
Found at i:79777895 original size:36 final size:36
Alignment explanation
Indices: 79777848--79777920 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
79777838 ACTCTTGAAG
79777848 TAGAAGCACCCACCAGATCAGCCTCAGCTTAGCATC
1 TAGAAGCACCCACCAGATCAGCCTCAGCTTAGCATC
*
79777884 TAGAAGCACCCACCGGATCAGCCTCAGCTTAGCATC
1 TAGAAGCACCCACCAGATCAGCCTCAGCTTAGCATC
79777920 T
1 T
79777921 TTCTTGGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.18
Consensus pattern (36 bp):
TAGAAGCACCCACCAGATCAGCCTCAGCTTAGCATC
Found at i:79785661 original size:78 final size:81
Alignment explanation
Indices: 79785516--79785697 Score: 221
Period size: 78 Copynumber: 2.3 Consensus size: 81
79785506 TCGAATGATG
* * * *
79785516 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
*
79785581 GTGCGAGTTAATA-AA
66 GTGCGAGTCAATATAA
* **
79785596 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
79785658 CGTGCGAGTCACTATAA
65 CGTGCGAGTCAATATAA
**
79785675 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
79785698 TGAGCGAGTC
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 47 0.53
79 29 0.33
80 11 0.12
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATATAA
Found at i:79785690 original size:40 final size:40
Alignment explanation
Indices: 79785569--79785707 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
79785559 GGACTAGGAT
* * * *
79785569 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTTAGTC
* *
79785608 CCGAAGGCATT-GTGCAAGTTACTAAACCCGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTT-AGTC
*
79785647 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCCGGGCTTAGTC
* *
79785687 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
79785708 GTTATATCCG
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
37 1 0.01
38 20 0.23
39 23 0.27
40 38 0.44
41 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGCTTAGTC
Found at i:79793647 original size:39 final size:40
Alignment explanation
Indices: 79793547--79793728 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
79793537 TCGAATGATG
* * *
79793547 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
79793587 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
79793627 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
79793665 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
79793706 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
79793729 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:79793692 original size:78 final size:80
Alignment explanation
Indices: 79793547--79793728 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
79793537 TCGAATGATG
* * * *
79793547 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
79793612 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
79793627 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
79793689 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
79793706 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
79793729 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:79796850 original size:40 final size:40
Alignment explanation
Indices: 79796729--79796906 Score: 249
Period size: 40 Copynumber: 4.5 Consensus size: 40
79796719 TATTCGGATG
* *
79796729 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
79796769 ATAT-CGGGCTAAGTCCCGAAGGCA-TT-TGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
79796806 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
79796846 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
79796886 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79796907 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
37 13 0.10
38 22 0.18
39 34 0.27
40 54 0.43
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:79804892 original size:40 final size:39
Alignment explanation
Indices: 79804837--79804937 Score: 157
Period size: 40 Copynumber: 2.5 Consensus size: 39
79804827 TATTCAGATG
79804837 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
79804877 ATATCCGGCCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
1 ATATCCGG-CTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
79804917 ATATCCGGCTAAATCCCGAAG
1 ATATCCGGCTAAGTCCCGAAG
79804938 ATACTTGGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
39 14 0.25
40 43 0.75
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (39 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:79809625 original size:31 final size:31
Alignment explanation
Indices: 79809587--79809649 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
79809577 TCATGTCCAA
79809587 ATCACCAACTTATATAAATAAGGTATAACAT
1 ATCACCAACTTATATAAATAAGGTATAACAT
79809618 ATCACCAACTTATATAAATAAGGTATAACAT
1 ATCACCAACTTATATAAATAAGGTATAACAT
79809649 A
1 A
79809650 CTCAAAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.16, G:0.06, T:0.29
Consensus pattern (31 bp):
ATCACCAACTTATATAAATAAGGTATAACAT
Found at i:79811171 original size:40 final size:40
Alignment explanation
Indices: 79811107--79811297 Score: 201
Period size: 39 Copynumber: 4.8 Consensus size: 40
79811097 GCTACTCGTT
* * * ***
79811107 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
79811147 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
79811187 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* **
79811226 GC-ATTGCCTTCGGG-CTTAGCCCGGATATCACAACTTGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
79811265 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
79811298 TTCGCACATT
Statistics
Matches: 134, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
38 1 0.01
39 87 0.65
40 46 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:79811224 original size:39 final size:39
Alignment explanation
Indices: 79811143--79811305 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
79811133 TATGGTAACC
* *
79811143 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
79811183 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
79811222 CGCAGC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCA-CAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
79811261 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
79811300 CGCACA
1 CGCACA
79811306 TTCATACACA
Statistics
Matches: 112, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 93 0.83
40 18 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:79813948 original size:20 final size:18
Alignment explanation
Indices: 79813925--79813961 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
79813915 ACCTAACATG
79813925 AATTAAATCTAAGACATATT
1 AATTAAAT-TAA-ACATATT
79813945 AATTAAATTAAACATAT
1 AATTAAATTAAACATAT
79813962 CAACATCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 3 0.18
20 8 0.47
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (18 bp):
AATTAAATTAAACATATT
Found at i:79817562 original size:40 final size:39
Alignment explanation
Indices: 79817531--79817630 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 39
79817521 CGGAATAGGA
*
79817531 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGATAAG
* * * * * *
79817570 CCCGAAGGCATTTGTGCAAGTTATTAAACCCGGGTTAAG
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGATAAG
79817609 TCCCGAAGGCATTCGTGCGAGT
1 T-CCGAAGGCATTCGTGCGAGT
79817631 CACTATAGCC
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 33 0.65
40 18 0.35
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGATAAG
Found at i:79817619 original size:79 final size:81
Alignment explanation
Indices: 79817479--79817663 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
79817469 TCGAATGATG
* * *
79817479 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGAATAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGAATAAGATCCGAAGGCATT
*
79817543 CGTGCGAGTTAATAAA
66 CGTGCGAGTCAATAAA
* * **
79817559 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTATTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGAATAAGAT-CCGAAGGCAT
* *
79817621 TCGTGCGAGTCACTATA
65 TCGTGCGAGTCAATAAA
* **
79817638 GCCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79817664 AGCGAGTCAT
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGAATAAGATCCGAAGGCATT
CGTGCGAGTCAATAAA
Found at i:79817643 original size:40 final size:40
Alignment explanation
Indices: 79817479--79817688 Score: 169
Period size: 40 Copynumber: 5.3 Consensus size: 40
79817469 TCGAATGATG
* * *
79817479 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTATA
** * * * * *
79817519 TCCGGAATAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTATA
* * * * *
79817559 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTATA
* *
79817598 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTATA
* * * *
79817638 GCCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTCATTATA
1 TCCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTCACTATA
79817678 TCC-GGTTAAGT
1 TCCGGGTTAAGT
79817689 TCCTAAGGTA
Statistics
Matches: 136, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 37 0.27
40 88 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTATA
Found at i:79817685 original size:79 final size:79
Alignment explanation
Indices: 79817532--79817688 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
79817522 GGAATAGGAT
* * * *
79817532 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTATTAA
1 CCGAAGGCATTCGTGCGAGTCAATAAAGCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCATTAA
79817597 ACCCGGGTTAAGTC
66 ACCCGGGTTAAGTC
* * ** *
79817611 CCGAAGGCATTCGTGCGAGTCACTATAGCCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATTA
1 CCGAAGGCATTCGTGCGAGTCAATAAAGCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCATTA
* *
79817676 TATCC-GGTTAAGT
65 AACCCGGGTTAAGT
79817689 TCCTAAGGTA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
79 40 0.61
80 26 0.39
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTCAATAAAGCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCATTAA
ACCCGGGTTAAGTC
Found at i:79821898 original size:30 final size:30
Alignment explanation
Indices: 79821841--79821898 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
79821831 TGCCTTTGAA
* * *
79821841 AATAGTTACAAAAAGAGACATCTAATTTCT
1 AATAGTTACAAAAAGAGAAACCAAATTTCT
*
79821871 AATATTTACAAAAAGAGAAACCAAATTT
1 AATAGTTACAAAAAGAGAAACCAAATTT
79821899 TGAAAATAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.28
Consensus pattern (30 bp):
AATAGTTACAAAAAGAGAAACCAAATTTCT
Found at i:79823646 original size:58 final size:58
Alignment explanation
Indices: 79823576--79823691 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
79823566 GATTTCTCGG
79823576 AGTAGAAGTACCCATTTGATAAATCTCAGCTTAGTGTCTTTCTTGGCAAGTAAATATT
1 AGTAGAAGTACCCATTTGATAAATCTCAGCTTAGTGTCTTTCTTGGCAAGTAAATATT
79823634 AGTAGAAGTACCCATTTGATAAATCTCAGCTTAGTGTCTTTCTTGGCAAGTAAATATT
1 AGTAGAAGTACCCATTTGATAAATCTCAGCTTAGTGTCTTTCTTGGCAAGTAAATATT
79823692 TAATTGCCGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (58 bp):
AGTAGAAGTACCCATTTGATAAATCTCAGCTTAGTGTCTTTCTTGGCAAGTAAATATT
Found at i:79827477 original size:24 final size:24
Alignment explanation
Indices: 79827450--79827509 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
79827440 ATTATGTTCA
79827450 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
79827474 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
79827498 CACACATAGTGC
1 CACACATAGTGC
79827510 ATTTGAGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATAGTAAATCG
Found at i:79829072 original size:27 final size:25
Alignment explanation
Indices: 79829035--79829146 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 25
79829025 ACAATGGCTG
*
79829035 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAG-CA
*
79829061 CCAGATACAGATAATCGTGGTAGAGCTA
1 CCAGA-ACAGATAAT-GTGGCAGAGC-A
79829089 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAG-CA
** *
79829116 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAG-CA
79829143 CCAG
1 CCAG
79829147 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (25 bp):
CCAGAACAGATAATGTGGCAGAGCA
Found at i:79829146 original size:54 final size:54
Alignment explanation
Indices: 79829035--79829146 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
79829025 ACAATGGCTG
* * *
79829035 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCTA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
79829089 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
79829143 CCAG
1 CCAG
79829147 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:79830601 original size:24 final size:24
Alignment explanation
Indices: 79830566--79830642 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
79830556 CCAACACTGT
*
79830566 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
79830590 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
79830614 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
79830638 TCTCC
1 TCTCC
79830643 TGACAGCCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:79834142 original size:31 final size:31
Alignment explanation
Indices: 79834107--79834167 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
79834097 ATACTTTAAC
79834107 AAGTGCAATACTCTTATTCCTCAATTGTTTA
1 AAGTGCAATACTCTTATTCCTCAATTGTTTA
79834138 AAGTGCAATACTCTTATTCCTCAATTGTTT
1 AAGTGCAATACTCTTATTCCTCAATTGTTT
79834168 TACTTCTCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.43
Consensus pattern (31 bp):
AAGTGCAATACTCTTATTCCTCAATTGTTTA
Found at i:79840310 original size:49 final size:48
Alignment explanation
Indices: 79840233--79840357 Score: 153
Period size: 49 Copynumber: 2.5 Consensus size: 48
79840223 AGATGCCGAC
* * *
79840233 GCTATGTCCAAGACATGGTCTTACACTGGCTTTCATGTAGCGAG-GTCGAT
1 GCTATGTCC-AGACA-GGTCTTACACTGGCTCTCATCTACCG-GTGTCGAT
79840283 GCTATGTCTCAGACAGGTCTTACACTGGCTCTCATCTACCGGTGTCGAT
1 GCTATGTC-CAGACAGGTCTTACACTGGCTCTCATCTACCGGTGTCGAT
* *
79840332 GCCATATCCCAGACAGGTCTTACACT
1 GCTATGT-CCAGACAGGTCTTACACT
79840358 AACACAGCCC
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
48 1 0.01
49 51 0.76
50 14 0.21
51 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (48 bp):
GCTATGTCCAGACAGGTCTTACACTGGCTCTCATCTACCGGTGTCGAT
Found at i:79850611 original size:56 final size:55
Alignment explanation
Indices: 79850517--79850681 Score: 206
Period size: 56 Copynumber: 2.9 Consensus size: 55
79850507 CATGGCATCA
** * **
79850517 ATATATGTGTGCGAGTAAGACCAAATTTAATAGGTTGGCATCGATATGTGATTCTG
1 ATATATGTGTGCGAGTAAGACC-CGTTTAGTACATTGGCATCGATATGTGATTCTG
*
79850573 ATATATGTGTGCGAGTAAGACCGCGTTTAGTTCATTGGCATCGATATGTGATTCTG
1 ATATATGTGTGCGAGTAAGACC-CGTTTAGTACATTGGCATCGATATGTGATTCTG
* * *
79850629 TTATATGTGTGCGAGTAAGACCCTGTCTTAG-ACAGTGGCATTGATATGTGATT
1 ATATATGTGTGCGAGTAAGACCC-GT-TTAGTACATTGGCATCGATATGTGATT
79850682 ACATGTAAGA
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 1 0.01
56 91 0.95
57 4 0.04
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (55 bp):
ATATATGTGTGCGAGTAAGACCCGTTTAGTACATTGGCATCGATATGTGATTCTG
Found at i:79852740 original size:51 final size:51
Alignment explanation
Indices: 79852663--79852787 Score: 162
Period size: 51 Copynumber: 2.5 Consensus size: 51
79852653 CGGATGCCCG
* **
79852663 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTACCACACTTGTAACCAAAGCTACCTT-TTACACAAA
* * *
79852714 GTGGCCTTCACATAGTACCACACTTGTAACCAAAGCTATCTTTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTAACCAAAGCTACCTTTTACACAAA
* *
79852765 GCGGCCTGCACTTAGTACCACAC
1 GTGGCCTGCACATAGTACCACAC
79852788 ATGTGATCGA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 2 0.03
51 62 0.97
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTAACCAAAGCTACCTTTTACACAAA
Found at i:79852801 original size:51 final size:50
Alignment explanation
Indices: 79852665--79852804 Score: 156
Period size: 51 Copynumber: 2.7 Consensus size: 50
79852655 GATGCCCGGT
* * *
79852665 GGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGT
1 GGCCTGCACATAGTACCACACTTGTA-TCAAAGCTATCTTCTTCACAAAGC
* * *
79852716 GGCCTTCACATAGTACCACACTTGTAACCAAAGCTATCTT-TTACACATAGC
1 GGCCTGCACATAGTACCACACTTGT-ATCAAAGCTATCTTCTT-CACAAAGC
* * *
79852767 GGCCTGCACTTAGTACCACACATGTGATCGAAGCTATC
1 GGCCTGCACATAGTACCACACTTGT-ATCAAAGCTATC
79852805 GGGAATGCAT
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
50 2 0.03
51 72 0.96
52 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (50 bp):
GGCCTGCACATAGTACCACACTTGTATCAAAGCTATCTTCTTCACAAAGC
Found at i:79854445 original size:19 final size:20
Alignment explanation
Indices: 79854421--79854458 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79854411 GGTACCACCA
79854421 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79854440 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79854459 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79856030 original size:39 final size:40
Alignment explanation
Indices: 79855856--79856178 Score: 462
Period size: 40 Copynumber: 8.2 Consensus size: 40
79855846 TCTTCAGAAT
* ** *
79855856 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
79855895 TTAACCCGGGTATATCAACTCGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79855935 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
79855975 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
79856015 -TAGCCCGGATATAACAACTCGCACGAATG-CTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79856053 -TAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
79856092 TCAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
79856131 TTAGCCCGGATATAATC-ACTAGCATAAAT-CCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
79856170 TTAGCCCGG
1 TTAGCCCGG
79856179 GTATCATTCA
Statistics
Matches: 260, Mismatches: 19, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
38 37 0.14
39 97 0.37
40 125 0.48
41 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:79856165 original size:117 final size:119
Alignment explanation
Indices: 79855858--79856178 Score: 463
Period size: 117 Copynumber: 2.7 Consensus size: 119
79855848 TTCAGAATTT
* ** * * *
79855858 AGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTAT-ATCAACTCGCACAA
1 AGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCAACTCGCACAA
* *
79855922 ATGCCTTTGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTT
66 AT-CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTC
* *
79855977 AGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC-TAGCCCGGATATAA-CAACTCGCACG
1 AG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCAACTCGCACA
*
79856040 AATGCTTCGGGTC-TAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTC
65 AATCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTC
* *
79856094 AGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAA
1 AGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCAACTCGCACAA
*
79856158 ATCCTTCGGGACTTAGCCCGG
66 ATCCTTCGGGTCTTAGCCCGG
79856179 GTATCATTCA
Statistics
Matches: 180, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
116 34 0.19
117 73 0.41
118 17 0.09
119 25 0.14
120 31 0.17
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (119 bp):
AGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCAACTCGCACAA
ATCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTC
Found at i:79864269 original size:74 final size:75
Alignment explanation
Indices: 79864183--79864442 Score: 337
Period size: 74 Copynumber: 3.4 Consensus size: 75
79864173 ATAACCACAA
* * * *
79864183 GCACAATTGCCTTCGGGTC-TAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
79864247 CGGATAACTC
66 CGGATAACTC
*
79864257 GCACAAATGCCTTC-GGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
79864321 CGGATATAACAACTC
66 CGG--AT---AACTC
79864336 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAG-C
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
79864400 CGGATATAATCACTA
66 CGG--AT-A--ACTC
* *
79864415 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
79864443 GTATCATTCA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
73 4 0.02
74 57 0.34
76 2 0.01
77 1 0.01
79 56 0.34
80 47 0.28
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (75 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATAACTC
Found at i:79864423 original size:39 final size:40
Alignment explanation
Indices: 79864163--79864442 Score: 382
Period size: 40 Copynumber: 7.2 Consensus size: 40
79864153 TCTTCGGAAT
* ** *
79864163 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
79864202 -TAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79864241 TTAGCCCGG--AT---AACTCGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
79864275 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79864315 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
79864355 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
79864395 TTAG-CCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
79864434 TTAGCCCGG
1 TTAGCCCGG
79864443 GTATCATTCA
Statistics
Matches: 218, Mismatches: 13, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
34 13 0.06
35 19 0.09
36 2 0.01
38 4 0.02
39 81 0.37
40 99 0.45
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:79866627 original size:93 final size:93
Alignment explanation
Indices: 79866468--79866638 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
79866458 GCCCCTAAGT
* * *
79866468 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCAATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCAA
79866533 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
79866561 GAACTCGGACTCAACTCAACAAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCAA
79866626 CGAGTTCGGATGC
66 CGAGTTCGGATGC
79866639 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79866635 original size:46 final size:46
Alignment explanation
Indices: 79866463--79866635 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
79866453 AACCTGCCCC
* * * * *
79866463 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
79866509 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
79866557 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
79866602 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79866636 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:79867092 original size:30 final size:30
Alignment explanation
Indices: 79867058--79867117 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
79867048 ATTTAATACG
79867058 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
79867088 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
79867118 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:79872289 original size:29 final size:29
Alignment explanation
Indices: 79872222--79872346 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
79872212 AAGTCTACAT
* * *
79872222 ACATGCATATGGCCCACTATGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
79872250 TCATTCATATGGTCCATTAGGCCCAAATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
79872279 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
**
79872308 ACATTCATACAGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
79872337 ACATTCATAT
1 ACATTCATAT
79872347 ACATGCTTTC
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 19 0.23
29 63 0.77
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:79879149 original size:18 final size:18
Alignment explanation
Indices: 79879126--79879165 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
79879116 TTTAAACTGT
79879126 TACTGCACTGATTACTCC
1 TACTGCACTGATTACTCC
* *
79879144 TACTGCACTGTTTACTGC
1 TACTGCACTGATTACTCC
79879162 TACT
1 TACT
79879166 ATAATGGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.38
Consensus pattern (18 bp):
TACTGCACTGATTACTCC
Found at i:79883430 original size:56 final size:56
Alignment explanation
Indices: 79883337--79883472 Score: 209
Period size: 56 Copynumber: 2.4 Consensus size: 56
79883327 CCCATGGCAT
*
79883337 CGATATATGTGTGCGAGTAAGACCACGTTTAAAACGTTGGCATCAATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAAAACGTTAGCATCAATATGTGATTC
* * *
79883393 CGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTAGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAAAACGTTAGCATCAATATGTGATTC
** *
79883449 CTTTATATGTGTGTGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
79883473 CTATTTGGAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAAAACGTTAGCATCAATATGTGATTC
Found at i:79895691 original size:29 final size:29
Alignment explanation
Indices: 79895659--79895717 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
79895649 GTTTCACATA
79895659 TATATACATAACATTGCTGAATCATCAAT
1 TATATACATAACATTGCTGAATCATCAAT
79895688 TATATACATAACATTGCTGAATCATCAAT
1 TATATACATAACATTGCTGAATCATCAAT
79895717 T
1 T
79895718 TAATAATTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (29 bp):
TATATACATAACATTGCTGAATCATCAAT
Found at i:79896129 original size:12 final size:12
Alignment explanation
Indices: 79896112--79896147 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
79896102 AAAATAAAAC
79896112 TTTCTCAAACTT
1 TTTCTCAAACTT
79896124 TTTCTCAAACTT
1 TTTCTCAAACTT
*
79896136 TTTCTAAAACTT
1 TTTCTCAAACTT
79896148 CTCATCATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTCTCAAACTT
Found at i:79897831 original size:27 final size:27
Alignment explanation
Indices: 79897794--79897904 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
79897784 AGCATGGCTG
* * *
79897794 CCAGA-ACAGATATTGTGACAAAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCA
79897820 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCA
* *
79897847 CCAGAAATAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATA-TTGTGGCAGAGCCA
*
79897875 CCAGAT-CAGATATTTGTGGTAGAGCCA
1 CCAGATACAGATA-TTGTGGCAGAGCCA
79897902 CCA
1 CCA
79897905 AAATGCTTCC
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
26 5 0.07
27 51 0.68
28 19 0.25
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAGAGCCA
Found at i:79897877 original size:55 final size:53
Alignment explanation
Indices: 79897801--79897908 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 53
79897791 CTGCCAGAAC
*
79897801 AGATATTGTGACAAAGTCACCAGATACAGATA-TTGTGGCAGAGCCACCAGAAAT
1 AGATATTGTGACAAAGCCACCAGAT-CAGATATTTGTGGCAGAGCCACCA-AAAT
* * *
79897855 AGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGTAGAGCCACCAAAAT
1 AGATA-TTGTGACAAAGCCACCAGATCAGATATTTGTGGCAGAGCCACCAAAAT
79897909 GCTTCCTCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 15 0.31
55 33 0.69
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (53 bp):
AGATATTGTGACAAAGCCACCAGATCAGATATTTGTGGCAGAGCCACCAAAAT
Found at i:79898039 original size:26 final size:27
Alignment explanation
Indices: 79898010--79898072 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 27
79898000 TAAAATTAAC
79898010 CCTAGGGGTACAATGGTAATTTT-ACA
1 CCTAGGGGTACAATGGTAATTTTCACA
* *
79898036 CCTAGGGGTATAATGGTAATTTTCATA
1 CCTAGGGGTACAATGGTAATTTTCACA
*
79898063 CTTAGGGGTA
1 CCTAGGGGTA
79898073 TTTTAGTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 22 0.67
27 11 0.33
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (27 bp):
CCTAGGGGTACAATGGTAATTTTCACA
Found at i:79900416 original size:47 final size:47
Alignment explanation
Indices: 79900340--79900462 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
79900330 GGTATAATAC
* * *
79900340 CAATGCCATGTCCCAGACATGGTCATACACTGGCTTATCCATCAAGT
1 CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
*
79900387 CAATATCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * *
79900434 CGATGCCATGTCCAAGACATGGTCTTACA
1 CAATACCATGTCCCAGACATGGTCTTACA
79900463 TTGACTATCG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (47 bp):
CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:79900554 original size:50 final size:47
Alignment explanation
Indices: 79900490--79900709 Score: 159
Period size: 46 Copynumber: 4.7 Consensus size: 47
79900480 GGCCGACGCT
*
79900490 ATGTCCCAGACATGGTCTTACACTAGCTTTCACATATTCGT-GCAAATGCC
1 ATGTCCCAGACATGGTCTTACACTAGC--TCACATATT-GTAGCCAATG-C
* * * * **
79900540 ATGTCCCAGACATGGTCTTACA-TTG-GCACCTCTATACATGCCAATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATAT-TGTA-GCCAATG-C
** * **
79900588 ATGTCCC-GTACATGGTCTTACACT-G-AAACATCTTGTAGCTGATGC
1 ATGTCCCAG-ACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
* * * *
79900633 ATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
*
79900679 ATGTCCCAGACAT-GTCTTACACTAGCACACA
1 ATGTCCCAGACATGGTCTTACACTAGCTCACA
79900710 AATAACCCGA
Statistics
Matches: 139, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 10 0.07
45 13 0.09
46 53 0.38
47 4 0.03
48 34 0.24
49 3 0.02
50 22 0.16
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
Found at i:79902820 original size:29 final size:29
Alignment explanation
Indices: 79902788--79902859 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
79902778 GACATATCTT
* *
79902788 GCCCAGTTCATATTCTTATGGCCCACTAG
1 GCCCAATTCATATTCATATGGCCCACTAG
* * *
79902817 GCCCAATTCACATTCATATGGCCCATTAT
1 GCCCAATTCATATTCATATGGCCCACTAG
*
79902846 GCCCAAATCATATT
1 GCCCAATTCATATT
79902860 ATACTCATGC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (29 bp):
GCCCAATTCATATTCATATGGCCCACTAG
Found at i:79902857 original size:58 final size:57
Alignment explanation
Indices: 79902747--79902859 Score: 129
Period size: 58 Copynumber: 2.0 Consensus size: 57
79902737 CATACATGCA
* * * * **
79902747 TATGGCCCATTGGGCCCAATCTCATTCATATGACATATCTTGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCATATGACACATCTTGCCCAAATCATATTCT
* *
79902804 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCAT-TATGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCATATGACACATCT-TGCCCAAATCATATT
79902860 ATACTCATGC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
57 18 0.39
58 28 0.61
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGACACATCTTGCCCAAATCATATTCT
Found at i:79903099 original size:16 final size:16
Alignment explanation
Indices: 79903080--79903125 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
79903070 CGGCTTTTTA
79903080 GCATTTTAGCTTTTCG
1 GCATTTTAGCTTTTCG
* **
79903096 GCATTTTGGCAATTCG
1 GCATTTTAGCTTTTCG
*
79903112 GCATTTCAGCTTTT
1 GCATTTTAGCTTTT
79903126 GCCGATTCAT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.46
Consensus pattern (16 bp):
GCATTTTAGCTTTTCG
Found at i:79905502 original size:56 final size:56
Alignment explanation
Indices: 79905436--79905773 Score: 424
Period size: 56 Copynumber: 6.2 Consensus size: 56
79905426 TCCCAGACAA
* * * * * *
79905436 GGTCTTACTCGTAAACACATATCGGAATCACCTATTGATGCCTACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
*
79905492 GGTCTTACTCGCACACACATATTGGAATCACATATC--T----A--TATTAAACGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
* *
79905540 GGTCTTACTCGCATACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
* * * * *
79905596 GGTCTTACTCGTACACACAAATCGAAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
* **
79905652 GGTCTTACTTGCACACACATATCAAAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
* * *
79905708 GGTCTTACTTGCACACACATATCGGAATCATATATCGATGCCAATGTATT-AACAT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
*
79905763 AGTCTTACTCG
1 GGTCTTACTCG
79905774 TAATCACATG
Statistics
Matches: 247, Mismatches: 27, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
48 43 0.17
50 2 0.01
54 2 0.01
55 13 0.05
56 187 0.76
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGT
Found at i:79905673 original size:160 final size:162
Alignment explanation
Indices: 79905436--79905781 Score: 455
Period size: 160 Copynumber: 2.1 Consensus size: 162
79905426 TCCCAGACAA
* * * * * *
79905436 GGTCTTACTCGTAAACACATATCGGAATCACCTATTGATGCCTACGTATTAAACGTGGTCTTACT
1 GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
*** *
79905501 CGCACACACATATTGGAATCACATATC-T-A-TATTAAACGTGGTCTTACTCGCATACACATATC
66 CGCACACACATATCAAAATCACATATCATCAGTATTAAACGTGGTCTTACTCGCACACACATATC
*
79905563 AGAATCACATATCGATGCCAATGTATTAAACGT
131 AGAATCACATATCGATGCCAATGTATT-AACAT
*
79905596 GGTCTTACTCGTACACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
1 GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
* *
79905661 TGCACACACATATCAAAATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACAC
66 CGCACACACATATCAAAATCACATATC-AT--C-A-GTATTAAACGTGGTCTTACTCGCACACAC
* *
79905726 ATATCGGAATCATATATCGATGCCAATGTATTAACAT
126 ATATCAGAATCACATATCGATGCCAATGTATTAACAT
* *
79905763 AGTCTTACTCGTAATCACA
1 GGTCTTACTCGTAAACACA
79905782 TGTCGATGCC
Statistics
Matches: 159, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
160 81 0.51
162 1 0.01
166 1 0.01
167 20 0.13
168 56 0.35
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (162 bp):
GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
CGCACACACATATCAAAATCACATATCATCAGTATTAAACGTGGTCTTACTCGCACACACATATC
AGAATCACATATCGATGCCAATGTATTAACAT
Found at i:79905821 original size:43 final size:43
Alignment explanation
Indices: 79905764--79905957 Score: 255
Period size: 43 Copynumber: 4.5 Consensus size: 43
79905754 TATTAACATA
* *
79905764 GTCTTACTCGTAATCACATGTCGATGCCAACGTCCCAAACGTG
1 GTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTG
* * ** *
79905807 GTCTTACATGTAATCACATATCAATGCCAATATCCCAGACGTG
1 GTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTG
* * * *
79905850 GTATTACACGTAATCACATATCGATGCCAACGTCCCAGACATA
1 GTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTG
* *
79905893 CTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAA-GTG
1 GTCTTACACGTAATCACATATCGATGCCAACGTCCCA-AACGTG
79905936 GTCTTACACGTAATCACATATC
1 GTCTTACACGTAATCACATATC
79905958 AGAAATCCTA
Statistics
Matches: 129, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
43 128 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (43 bp):
GTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTG
Found at i:79905877 original size:86 final size:86
Alignment explanation
Indices: 79905767--79905957 Score: 283
Period size: 86 Copynumber: 2.2 Consensus size: 86
79905757 TAACATAGTC
* * * ** *
79905767 TTACTCGTAATCACATGTCGATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATCAAT
1 TTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATATCAAT
*
79905832 GCCAATATCCCAGACGTGGTA
66 GCCAATATCCCAGAAGTGGTA
* *
79905853 TTACACGTAATCACATATCGATGCCAACGTCCCAGACATACTCTTACACGTAATCACATATCGAT
1 TTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATATCAAT
* *
79905918 GCCAATGTCCCAGAAGTGGTC
66 GCCAATATCCCAGAAGTGGTA
79905939 TTACACGTAATCACATATC
1 TTACACGTAATCACATATC
79905958 AGAAATCCTA
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 94 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (86 bp):
TTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATATCAAT
GCCAATATCCCAGAAGTGGTA
Found at i:79916834 original size:47 final size:47
Alignment explanation
Indices: 79916798--79917024 Score: 382
Period size: 47 Copynumber: 4.7 Consensus size: 47
79916788 CTTCCACTTC
*
79916798 CATCACATTGACCATTCGGCCTTATCATATACATACACCTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCATATACATACACCTTCACATT
* *
79916845 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCATATACATACACCTTCACATT
79916892 CATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATT
1 CATCACATTGGCCATTCGGCCTTAT--CATATACATACACCTTCACATT
*
79916941 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCATATACATACACCTTCACATT
79916988 CATCACATTGGCCATTCGGCCTTATCACATATACATA
1 CATCACATTGGCCATTCGGCCTTAT--CATATACATA
79917025 TCTTGTACAT
Statistics
Matches: 169, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
47 115 0.68
49 54 0.32
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.31
Consensus pattern (47 bp):
CATCACATTGGCCATTCGGCCTTATCATATACATACACCTTCACATT
Found at i:79916961 original size:96 final size:96
Alignment explanation
Indices: 79916783--79917024 Score: 427
Period size: 96 Copynumber: 2.5 Consensus size: 96
79916773 TATCACAGTT
* *
79916783 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTAT--CATATACATACACCTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATT
79916845 CATCACATTGGCCATTCGGCCTTATCACATAC
65 CATCACATTGGCCATTCGGCCTTATCACATAC
79916877 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
79916942 ATCACATTGGCCATTCGGCCTTATCACATAC
66 ATCACATTGGCCATTCGGCCTTATCACATAC
*
79916973 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATA
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATA
79917025 TCTTGTACAT
Statistics
Matches: 142, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
94 35 0.25
95 2 0.01
96 105 0.74
ACGTcount: A:0.29, C:0.33, G:0.08, T:0.31
Consensus pattern (96 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:79920075 original size:25 final size:25
Alignment explanation
Indices: 79920041--79920095 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
79920031 CGGTTAAAGG
*
79920041 ATTCGCACACACAGTGTCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
79920066 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
79920091 ATTCG
1 ATTCG
79920096 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:79920308 original size:40 final size:40
Alignment explanation
Indices: 79920264--79920460 Score: 295
Period size: 40 Copynumber: 4.9 Consensus size: 40
79920254 CACATCATCG
* * *
79920264 GCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
*
79920304 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
* *
79920344 GCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
* **
79920384 GCACGAATGCTCTTCGGGACTTAGCCCGGATACATTACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
* *
79920424 GCACGAATGCTCTTCAGGACCTAGCCCGGATATAACA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
79920461 TACTGAACTT
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
Found at i:79922520 original size:47 final size:47
Alignment explanation
Indices: 79922454--79922882 Score: 621
Period size: 47 Copynumber: 9.0 Consensus size: 47
79922444 TTATCACAGT
*
79922454 TATACA-CTTC-CATTCCATCACATTGACCATTCGGCCTTATCATATA
1 TATACACCTTCACATT-CATCACATTGGCCATTCGGCCTTATCATATA
* * *
79922500 TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
* *
79922547 CATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATA
*
79922596 CATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
1 TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
* *
79922643 TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATA
*
79922692 CATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
1 TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
* *
79922739 TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATA
* * *
79922788 CATACA-CTTCACATTCATCATATTGGCCATTCGGCCTTATCACATA
1 TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
* *
79922834 CATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
79922881 TA
1 TA
79922883 CATATCTTGT
Statistics
Matches: 350, Mismatches: 24, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
46 16 0.05
47 199 0.57
48 36 0.10
49 99 0.28
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
TATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATA
Found at i:79922628 original size:96 final size:96
Alignment explanation
Indices: 79922455--79922886 Score: 712
Period size: 96 Copynumber: 4.5 Consensus size: 96
79922445 TATCACAGTT
* * * *
79922455 ATACAC-TTC-CATTCCATCACATTGACCATTCGGCCTTAT--CATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATT
79922516 CATCACATTGGCCATTCGGCCTTATCACATAC
65 CATCACATTGGCCATTCGGCCTTATCACATAC
79922548 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
* *
79922613 ATCACATTGGCCATTCGGCCTTATCATATAT
66 ATCACATTGGCCATTCGGCCTTATCACATAC
*
79922644 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
* *
79922709 ATCACATTGGCCATTCGGCCTTATCATATAT
66 ATCACATTGGCCATTCGGCCTTATCACATAC
*
79922740 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACA-CTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
*
79922804 ATCATATTGGCCATTCGGCCTTATCACATAC
66 ATCACATTGGCCATTCGGCCTTATCACATAC
*
79922835 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATA
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATA
79922887 TCTTGTACAT
Statistics
Matches: 323, Mismatches: 12, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
93 6 0.02
94 27 0.08
95 92 0.28
96 198 0.61
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (96 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:79922737 original size:143 final size:142
Alignment explanation
Indices: 79922455--79922886 Score: 708
Period size: 143 Copynumber: 3.0 Consensus size: 142
79922445 TATCACAGTT
*
79922455 ATACA-CTTC-CATTCCATCACATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCA
1 ATACACCTTCACATT-CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCA
*
79922518 TCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGC
65 TCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTCATCACATTGGCCATTCGGC
79922583 CTTATCACATATAC
130 CTTAT-ACATATAC
79922597 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCAT
1 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCAT
79922662 CACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTCATCACATTGGCCATTCGG
66 CACATTGGCCATTCGGCCTTATCAC--ATACATACACCTTCACATTCATCACATTGGCCATTCGG
*
79922727 CCTTAT-CATATAT
129 CCTTATACATATAC
* * * * *
79922740 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTCACATTCA
1 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATATATATAC-TTTCACATTCA
*
79922805 TCATATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTCATCACATTGGCCATTCGGC
65 TCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTCATCACATTGGCCATTCGGC
79922870 CTTATCACATATAC
130 CTTAT-ACATATAC
79922884 ATA
1 ATA
79922887 TCTTGTACAT
Statistics
Matches: 273, Mismatches: 10, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
142 49 0.18
143 133 0.49
144 48 0.18
145 43 0.16
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (142 bp):
ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCAT
CACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTCATCACATTGGCCATTCGGCC
TTATACATATAC
Found at i:79928252 original size:15 final size:15
Alignment explanation
Indices: 79928228--79928272 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
79928218 AATGATATCA
79928228 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * *
79928243 TATTTTGGATTCCTC
1 TATCTTGGATTTCTT
*
79928258 TATCTTGGTTTTCTT
1 TATCTTGGATTTCTT
79928273 ATCATCTTTA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.11, C:0.16, G:0.13, T:0.60
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:79930718 original size:43 final size:43
Alignment explanation
Indices: 79930546--79930719 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
79930536 TGATGAGATC
* *
79930546 TCGTATAAGACCATATCTGGGATATGGCATCAGCATCGTTATG-TGTT
1 TCGTATAAGACCATATCTGGGATATGGCATC-G-AT--ATAAGAT-TT
* * * * * *
79930593 ATCATGTAAGACCATATCTGGGATACGGCTTTGATATGAGA-TT
1 -TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
* ** * *
79930636 TCGTGTAAGACCACGTCTGGGACATGGCATCGAAATAAGATTT
1 TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
*
79930679 TCGTATAAGACCATATCTGGGATATGGCATCGATGTAAGAT
1 TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGAT
79930720 CCCATGTAAG
Statistics
Matches: 101, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 31 0.31
43 39 0.39
44 2 0.02
46 2 0.02
47 1 0.01
48 26 0.26
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (43 bp):
TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
Found at i:79932533 original size:18 final size:18
Alignment explanation
Indices: 79932510--79932548 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
79932500 GTCGCAAGAG
79932510 AGTAAACCT-CCCACAATT
1 AGTAAA-CTGCCCACAATT
79932528 AGTAAACTGCCCACAATT
1 AGTAAACTGCCCACAATT
79932546 AGT
1 AGT
79932549 CAAAAAGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.23
Consensus pattern (18 bp):
AGTAAACTGCCCACAATT
Found at i:79934058 original size:40 final size:40
Alignment explanation
Indices: 79933996--79934208 Score: 247
Period size: 40 Copynumber: 5.3 Consensus size: 40
79933986 AAACCAAGTA
* * * * *
79933996 CCTTCGGGATTTA-ACCGGATATAGCT-ACTAGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* ** *
79934035 CCTTCGGGACTCAGCCCGGATATAGTAGTTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79934075 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79934115 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* *
79934155 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
79934195 CCTTCGGAACTTAG
1 CCTTCGGGACTTAG
79934209 TGTAACACCC
Statistics
Matches: 153, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 14 0.09
40 138 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79935719 original size:39 final size:39
Alignment explanation
Indices: 79935638--79935761 Score: 185
Period size: 39 Copynumber: 3.2 Consensus size: 39
79935628 TATGGTAACC
** *
79935638 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
79935678 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
79935717 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
79935756 CGCACA
1 CGCACA
79935762 TTCATTCACA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 60 0.79
40 16 0.21
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:79943588 original size:40 final size:39
Alignment explanation
Indices: 79943544--79943697 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
79943534 GTTCAAAACA
* * ** * *
79943544 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
79943584 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
79943624 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
79943663 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
79943698 TTCATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:79943655 original size:39 final size:39
Alignment explanation
Indices: 79943574--79943697 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
79943564 TATGGTAACC
* *
79943574 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
79943614 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
79943653 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
79943692 CGCACA
1 CGCACA
79943698 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:79950793 original size:72 final size:72
Alignment explanation
Indices: 79950704--79950845 Score: 239
Period size: 72 Copynumber: 2.0 Consensus size: 72
79950694 AGGGCACACG
** *
79950704 CCCGTGTCCCCCAATTTCAGCCTGTGTGATTTGCGAATTTCAAATTTGGGCACATCTAACATTTA
1 CCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTAACATTTA
79950769 GTACATA
66 GTACATA
* *
79950776 CCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACGTCTGACATTTA
1 CCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTAACATTTA
79950841 GTACA
66 GTACA
79950846 CGCCTGTGTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.32
Consensus pattern (72 bp):
CCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTAACATTTA
GTACATA
Found at i:79958697 original size:39 final size:40
Alignment explanation
Indices: 79958597--79958778 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
79958587 TCGAATGATG
* * *
79958597 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
79958637 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
*
79958677 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * *
79958716 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
79958757 --CGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
79958779 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
39 52 0.44
40 56 0.48
41 9 0.08
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:79958771 original size:79 final size:80
Alignment explanation
Indices: 79958598--79958780 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
79958588 CGAATGATGT
* * *
79958598 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
*
79958662 GTGCGAGTTAATAAA
66 GTGCGAGTCAATAAA
* **
79958677 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
79958739 TCGTGCGAGTCACTATAA
64 TCGTGCGAGTCAATA-AA
**
79958757 -CGGGCTTCGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79958781 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 8 0.09
79 62 0.70
80 19 0.21
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATAAA
Found at i:79968315 original size:40 final size:40
Alignment explanation
Indices: 79968260--79968468 Score: 217
Period size: 40 Copynumber: 5.2 Consensus size: 40
79968250 TGAATGATAC
* * * *
79968260 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
*
79968300 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATAT
**
79968340 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATAT
* * * ** *
79968380 CCGGGCTAAGACCCCAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
* * **
79968420 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GATTATAT
79968461 CC-GGCTAA
1 CCGGGCTAA
79968469 ATTCCGAAGA
Statistics
Matches: 142, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 133 0.94
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
Found at i:79968467 original size:80 final size:80
Alignment explanation
Indices: 79968260--79968468 Score: 244
Period size: 80 Copynumber: 2.6 Consensus size: 80
79968250 TGAATGATAC
* * * *
79968260 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATATCCGGGCTAAGACCCCAAGGCATTCG
* *** *
79968325 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
*
79968340 CCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTG-TTATATCCGGGCTAAGACCCCAAGGCATT
1 CCGGGCTAAGACCCGAAGGCAATT-ATGCTAG-TGATTATATCCGGGCTAAGACCCCAAGGCATT
*
79968403 TGTGCAAGTTACCAAAT
64 CGTGCAAGTTACCAAAT
* * *
79968420 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGATTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGT-GATTATATCCGGGCTAA
79968469 ATTCCGAAGA
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
79 3 0.03
80 93 0.85
81 13 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATATCCGGGCTAAGACCCCAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:79970058 original size:12 final size:12
Alignment explanation
Indices: 79970041--79970067 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
79970031 AGACATTCAG
79970041 ATGTTTGTTGGT
1 ATGTTTGTTGGT
79970053 ATGTTTGTTGGT
1 ATGTTTGTTGGT
79970065 ATG
1 ATG
79970068 CTTGAGCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.11, C:0.00, G:0.33, T:0.56
Consensus pattern (12 bp):
ATGTTTGTTGGT
Found at i:79975916 original size:31 final size:31
Alignment explanation
Indices: 79975852--79975926 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
79975842 GTCCCAAGCA
*
79975852 ACACAAGCGTGTGTGACCACACGGCTAGCCC
1 ACACAGGCGTGTGTGACCACACGGCTAGCCC
** *
79975883 ACATGGGCGTGTGTGACCACACGGCTTA-TCC
1 ACACAGGCGTGTGTGACCACACGGC-TAGCCC
79975914 ACACAGGCGTGTG
1 ACACAGGCGTGTG
79975927 ACCCTCTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
31 35 0.95
32 2 0.05
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (31 bp):
ACACAGGCGTGTGTGACCACACGGCTAGCCC
Found at i:79977682 original size:64 final size:64
Alignment explanation
Indices: 79977601--79977784 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
79977591 AGACATTATG
* *
79977601 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * *
79977665 ATGTAGCTAGGTCGCATGCATGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
79977730 AA
63 AA
* * * *
79977732 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
79977785 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 20 0.21
65 8 0.08
66 15 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79983276 original size:43 final size:42
Alignment explanation
Indices: 79983202--79983311 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 42
79983192 GAGATTAGTA
* * * *
79983202 TAAGACCATATCTGGGATATGACATCGATATGAGA-CTTCGTG
1 TAAGACCATATCTAGGATATGGCATCGATATGAGATC-CCATG
* *
79983244 TAAGACCATAGCTAGGCTATTGGCATCGATATGAGATCCCATG
1 TAAGACCATATCTAGGATA-TGGCATCGATATGAGATCCCATG
79983287 TAAGACCATATCTAGGATATGGCAT
1 TAAGACCATATCTAGGATATGGCAT
79983312 TGGTATGGTG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 22 0.38
43 35 0.60
44 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGGCATCGATATGAGATCCCATG
Found at i:79985967 original size:48 final size:46
Alignment explanation
Indices: 79985901--79986023 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
79985891 AAGCTGACGC
* * * * *
79985901 CATGTCCTAGACAGGTCTTACACTAGCTTGTATATCCCAAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCCCAAGGCCGATG
* * *
79985949 CATGTCCCAGACATGTCTTGCACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCCCAAGGCCGATG
*
79985995 CATGTCCCAGACATGTCTTACACTGGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
79986024 ACATACCACC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 39 0.60
47 2 0.03
48 24 0.37
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCCCAAGGCCGATG
Found at i:79989887 original size:48 final size:48
Alignment explanation
Indices: 79989816--79990099 Score: 286
Period size: 48 Copynumber: 5.9 Consensus size: 48
79989806 AGGGTAAATT
* ** * * *
79989816 GCCGATGCCATATCTTAGACATGGTCTTACACTGGCT-TACATGTCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CATATCGAG
* * *
79989864 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAG
* * * * *
79989912 GTCGATGCCATGTCCTAGACATGGTCTTAC-CTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAT-ATCGAG
* * * * *
79989959 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAG
* *
79990007 GCCGATGCCATGTCCCAAACATGGTCTTACATTAGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAG
* * * * * *
79990055 GCCGACGCCATGTCTCAGACATGGTTTTACACTAGCACACATATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC
79990100 ACCCAATGTC
Statistics
Matches: 192, Mismatches: 40, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
47 38 0.20
48 153 0.80
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAG
Found at i:79990089 original size:96 final size:96
Alignment explanation
Indices: 79989816--79990100 Score: 378
Period size: 96 Copynumber: 3.0 Consensus size: 96
79989806 AGGGTAAATT
* * * * *
79989816 GCCGATGCCATATCTTAGACATGGTCTTACACTGGCT-TACATGTCGAGGCCGATGCCATGTCCC
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCT-CATATCGTGGCCGACGCCATGTCCC
* * * *
79989880 AAACATGGTCTTACACTAGCTCTCATCTCAAT
65 AAACATGGTCTTACACTAGCACACATATCAAC
*
79989912 GTCGATGCCATGTCCTAGACATGGTCTTAC-CTGGCTCTCATAAT-GTGGCCGACGCCATGTCCC
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCAT-ATCGTGGCCGACGCCATGTCCC
79989975 AAACATGGTCTTACACTAGCACACATATCAAC
65 AAACATGGTCTTACACTAGCACACATATCAAC
* * * * *
79990007 GCCGATGCCATGTCCCAAACATGGTCTTACATTAGCTCTCATATCGTGGCCGACGCCATGTCTCA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCGTGGCCGACGCCATGTCCCA
* *
79990072 GACATGGTTTTACACTAGCACACATATCA
66 AACATGGTCTTACACTAGCACACATATCA
79990101 CCCAATGTCA
Statistics
Matches: 167, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
95 83 0.50
96 84 0.50
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (96 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCGTGGCCGACGCCATGTCCCA
AACATGGTCTTACACTAGCACACATATCAAC
Found at i:79991428 original size:56 final size:58
Alignment explanation
Indices: 79991293--79991441 Score: 166
Period size: 56 Copynumber: 2.6 Consensus size: 58
79991283 TATTGACCTT
* * * *
79991293 GTTATAGAAAGGATTTAGCCCGGAC-GAGTAATCCTAATATAATACCTCTCGAGTATAT
1 GTTATATAAAGGATTTAGCCTGGACTG-GTAATCCTAATATAATACCTCTCGAGCATAC
* *
79991351 GTTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGAACT-CCT-T-GAGCATAC
1 GTTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATAT-AA-TACCTCTCGAGCATAC
79991407 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
79991442 GTTATACAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
55 2 0.03
56 36 0.46
57 2 0.03
58 35 0.45
59 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATAC
Found at i:79998781 original size:72 final size:72
Alignment explanation
Indices: 79998664--79998810 Score: 285
Period size: 72 Copynumber: 2.0 Consensus size: 72
79998654 TTACACACAC
*
79998664 ATACCTGCACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
79998729 CGGAATA
66 CGGAATA
79998736 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
79998801 CGGAATA
66 CGGAATA
79998808 ATA
1 ATA
79998811 ACGGATATCG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (72 bp):
ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
CGGAATA
Found at i:79998954 original size:51 final size:51
Alignment explanation
Indices: 79998822--79999101 Score: 185
Period size: 51 Copynumber: 5.5 Consensus size: 51
79998812 CGGATATCGG
* * * * * *
79998822 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCT-TCTTCACAAA
1 GTGGCCTGCACATAGTACCACACATGTGA-TCAAAGCCATCTAT-TACACATA
* * * *
79998873 GTGGCCTTCACATAGTACCACACTTTTGATCAAAGCCATCTCTTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * *
79998924 GTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGAGTATACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * * *
79998975 GTAGCCTGCACTTAGT-CCTATACATGCGACCTAA-CCATCTAGTACACATA
1 GTGGCCTGCACATAGTACC-ACACATGTGATCAAAGCCATCTATTACACATA
* * * * * * *
79999025 GTAGCCTGCACTTCGTACTACACACGTGACCTAAAACCAT-T-TTAAACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATC-AAAGCCATCTATT--ACACATA
*
79999077 GTGGCCTGCACATAGTACTACACAT
1 GTGGCCTGCACATAGTACCACACAT
79999102 TTTTTCTCAT
Statistics
Matches: 185, Mismatches: 36, Indels: 15
0.78 0.15 0.06
Matches are distributed among these distances:
50 40 0.22
51 111 0.60
52 34 0.18
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
Found at i:79999056 original size:50 final size:50
Alignment explanation
Indices: 79998916--79999101 Score: 185
Period size: 50 Copynumber: 3.7 Consensus size: 50
79998906 AGCCATCTCT
* * * * * *
79998916 TACACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGAG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CCATCTAG
* * * *
79998967 TATACATAGTAGCCTGCACTTAGTCCTATACATGCGACCTAACCATCTAG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAG
* * *
79999017 TACACATAGTAGCCTGCACTTCGTACTACACACGTGACCTAAAACCATTTTA-
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCA-TCTAG
* * *
79999069 AACACATAGTGGCCTGCACATAGTACTACACAT
1 TACACATAGTAGCCTGCACTTAGTACTACACAT
79999102 TTTTTCTCAT
Statistics
Matches: 110, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
50 40 0.36
51 34 0.31
52 33 0.30
53 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAG
Found at i:80004318 original size:40 final size:40
Alignment explanation
Indices: 80004263--80004361 Score: 164
Period size: 40 Copynumber: 2.5 Consensus size: 40
80004253 ATTGATTATT
80004263 TATGGCACTTAGTGTGTGATACAACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGTGATACAACATAGCTTCGGCTATA
* *
80004303 TATGGCACTTAGTGTGCT-ATTCGACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTG-TGATACAACATAGCTTCGGCTATA
80004343 TATGGCACTTAGTGTGTGA
1 TATGGCACTTAGTGTGTGA
80004362 CTTGAGATAG
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
39 1 0.02
40 53 0.96
41 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (40 bp):
TATGGCACTTAGTGTGTGATACAACATAGCTTCGGCTATA
Found at i:80004372 original size:40 final size:39
Alignment explanation
Indices: 80004263--80004398 Score: 157
Period size: 40 Copynumber: 3.4 Consensus size: 39
80004253 ATTGATTATT
**
80004263 TATGGCACTTAGTGTGTGATACAACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGTGAT-TGACATAGCTTCGGCTATA
80004303 TATGGCACTTAGTGTGCT-ATTCGACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTG-TGATT-GACATAGCTTCGGCTATA
* * * *
80004343 TATGGCACTTAGTGTGTGACTTGAGATAGCTTCAGATATG
1 TATGGCACTTAGTGTGTGA-TTGACATAGCTTCGGCTATA
* *
80004383 CATAGCACTTAGTGTG
1 TATGGCACTTAGTGTG
80004399 GAAGATATCT
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
39 1 0.01
40 80 0.95
41 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (39 bp):
TATGGCACTTAGTGTGTGATTGACATAGCTTCGGCTATA
Found at i:80005868 original size:28 final size:28
Alignment explanation
Indices: 80005836--80005895 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
80005826 TTGTGTTGAA
*
80005836 TGATTTATAAGAATGAATGCTTTATGTT
1 TGATTTATAAGAATAAATGCTTTATGTT
* *
80005864 TGATTTATGAGAATAAATGTTTTATGTT
1 TGATTTATAAGAATAAATGCTTTATGTT
80005892 TGAT
1 TGAT
80005896 AAATGTATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (28 bp):
TGATTTATAAGAATAAATGCTTTATGTT
Found at i:80012053 original size:40 final size:40
Alignment explanation
Indices: 80011992--80012082 Score: 128
Period size: 40 Copynumber: 2.3 Consensus size: 40
80011982 GTTATTTGTA
* * * *
80011992 GCACTTAGTGTGCGATACAACATATCGTCGGCTATATATG
1 GCACTTAGTGTACGATACAACAGAGCGTCAGCTATATATG
* *
80012032 GCACTTAGTGTACGATTCAACAGAGCTTCAGCTATATATG
1 GCACTTAGTGTACGATACAACAGAGCGTCAGCTATATATG
80012072 GCACTTAGTGT
1 GCACTTAGTGT
80012083 GCAACTTGAG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (40 bp):
GCACTTAGTGTACGATACAACAGAGCGTCAGCTATATATG
Found at i:80012099 original size:40 final size:39
Alignment explanation
Indices: 80011992--80012124 Score: 115
Period size: 40 Copynumber: 3.3 Consensus size: 39
80011982 GTTATTTGTA
* * * * *
80011992 GCACTTAGTGTGCGATACAACATATCGTCGGCTATATATG
1 GCACTTAGTGTGCAATTCAACAGAGCTTC-GCTATATATG
* *
80012032 GCACTTAGTGTACGATTCAACAGAGCTTCAGCTATATATG
1 GCACTTAGTGTGCAATTCAACAGAGCTTC-GCTATATATG
* * * * *
80012072 GCACTTAGTGTGCAACTT-GAGATAGCTTCGACTATGTACG
1 GCACTTAGTGTGCAA-TTCAACAGAGCTTCG-CTATATATG
80012112 GCACTTAGTGTGC
1 GCACTTAGTGTGC
80012125 TAGATATCAA
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 75 0.96
41 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (39 bp):
GCACTTAGTGTGCAATTCAACAGAGCTTCGCTATATATG
Done.