Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 258 of 438
Found at i:80018662 original size:47 final size:47
Alignment explanation
Indices: 80018594--80018809 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
80018584 CCTGTATATA
* *
80018594 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
80018641 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
80018688 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
80018735 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
80018782 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
80018810 CGAAATGTGT
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:80018874 original size:65 final size:65
Alignment explanation
Indices: 80018793--80018924 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
80018783 ATATGTGGTA
80018793 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
1 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
80018858 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
1 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
80018923 AG
1 AG
80018925 ATATGTATGA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.34, C:0.11, G:0.31, T:0.24
Consensus pattern (65 bp):
AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
Found at i:80018913 original size:32 final size:32
Alignment explanation
Indices: 80018812--80018913 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
80018802 GGCTAATGCG
80018812 AAATGTGTATGAGATAGATATGTGGTAAAGCC
1 AAATGTGTATGAGATAGATATGTGGTAAAGCC
*** * * *
80018844 AAATG-GCTAATGTGAGGCCGA-ATG-GCTAATGCG
1 AAATGTG-T-A--TGAGATAGATATGTGGTAAAGCC
80018877 AAATGTGTATGAGATAGATATGTGGTAAAGCC
1 AAATGTGTATGAGATAGATATGTGGTAAAGCC
80018909 AAATG
1 AAATG
80018914 GCTAATGTGA
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
30 6 0.12
31 4 0.08
32 18 0.35
33 13 0.25
34 4 0.08
35 6 0.12
ACGTcount: A:0.36, C:0.09, G:0.29, T:0.25
Consensus pattern (32 bp):
AAATGTGTATGAGATAGATATGTGGTAAAGCC
Found at i:80018946 original size:2 final size:2
Alignment explanation
Indices: 80018939--80018963 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80018929 GTATGAGATG
80018939 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
80018964 TGTGGCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80023381 original size:39 final size:40
Alignment explanation
Indices: 80023324--80023504 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
80023314 AACCCAAGTA
* *
80023324 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
80023363 CCTTCGGG-TTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80023402 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80023442 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80023482 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80023505 CATTCGAATA
Statistics
Matches: 135, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
38 5 0.04
39 37 0.27
40 93 0.69
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:80031430 original size:40 final size:40
Alignment explanation
Indices: 80031356--80031457 Score: 147
Period size: 40 Copynumber: 2.6 Consensus size: 40
80031346 AACCCAAGTA
*
80031356 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATG
80031395 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAATG
*
80031435 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
80031458 CATTCGAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 44 0.76
41 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:80034133 original size:12 final size:12
Alignment explanation
Indices: 80034116--80034147 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
80034106 CTCATTTATT
80034116 CACACTTTACCA
1 CACACTTTACCA
80034128 CACACTTTA-CA
1 CACACTTTACCA
80034139 -ACACTTTAC
1 CACACTTTAC
80034148 AAATAAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 8 0.42
11 2 0.11
12 9 0.47
ACGTcount: A:0.34, C:0.38, G:0.00, T:0.28
Consensus pattern (12 bp):
CACACTTTACCA
Found at i:80035673 original size:3 final size:3
Alignment explanation
Indices: 80035665--80035730 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
80035655 TGTCTTAGAG
80035665 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
80035713 TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA
80035731 AAGGAAGAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:80036730 original size:19 final size:17
Alignment explanation
Indices: 80036687--80036725 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
80036677 TTAGATATAT
80036687 TAACATTTTTTATACAC
1 TAACATTTTTTATACAC
80036704 TAACATTTTTTATACAC
1 TAACATTTTTTATACAC
80036721 TAACA
1 TAACA
80036726 CATTTCCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (17 bp):
TAACATTTTTTATACAC
Found at i:80038105 original size:40 final size:40
Alignment explanation
Indices: 80038061--80038141 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
80038051 TTAATTTTTG
80038061 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
1 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
**
80038101 GACTTTATTTTACTCATCTTAGTTAATTATTGATTTGCTA
1 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
80038141 G
1 G
80038142 TGTAACAGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.49
Consensus pattern (40 bp):
GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
Found at i:80040772 original size:21 final size:22
Alignment explanation
Indices: 80040733--80040773 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
80040723 TTGGAATGGT
80040733 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
80040755 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
80040774 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:80043105 original size:25 final size:25
Alignment explanation
Indices: 80043077--80043155 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
80043067 ACTCGGCCCT
*
80043077 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
80043102 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
80043124 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
80043149 ATCACAT
1 ATCACAT
80043156 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:80043201 original size:49 final size:47
Alignment explanation
Indices: 80043027--80043470 Score: 663
Period size: 47 Copynumber: 9.3 Consensus size: 47
80043017 CCCTTCAGGA
* * * * * *
80043027 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
80043074 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
80043121 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
80043168 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
80043217 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTAGGC
* *
80043266 CTTATCACATATATACACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
80043315 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
80043362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
80043409 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
80043456 CTTATCACATATATA
1 CTTATCACATATATA
80043471 TATCTCATAC
Statistics
Matches: 366, Mismatches: 27, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 228 0.62
49 138 0.38
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:80043371 original size:22 final size:22
Alignment explanation
Indices: 80043343--80043465 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
80043333 TTTCACATTC
80043343 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
80043365 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
* *
80043389 CATCACATCGGCCATTAGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
80043412 ATCACATATATGCACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
80043436 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
80043459 ATCACAT
1 ATCACAT
80043466 ATATATATCT
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 28 0.41
23 10 0.14
24 10 0.14
25 21 0.30
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:80049641 original size:2 final size:2
Alignment explanation
Indices: 80049634--80049671 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
80049624 TTAATGTGAA
80049634 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80049672 GAGATATGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80049721 original size:48 final size:48
Alignment explanation
Indices: 80049664--80050112 Score: 675
Period size: 48 Copynumber: 9.1 Consensus size: 48
80049654 ATATATATAT
*
80049664 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80049712 ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
80049760 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80049808 ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGCGAAATA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A
* * *
80049859 TATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A
*
80049911 TATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80049960 ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA
* *
80050009 TATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80050058 ATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
80050106 ATATGTA
1 ATATGTA
80050113 GGCGATGTGT
Statistics
Matches: 374, Mismatches: 19, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
47 1 0.00
48 232 0.62
49 5 0.01
50 43 0.11
51 2 0.01
52 91 0.24
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:80050058 original size:98 final size:98
Alignment explanation
Indices: 80049664--80050109 Score: 677
Period size: 98 Copynumber: 4.5 Consensus size: 98
80049654 ATATATATAT
* *
80049664 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATAT
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATAT
80049727 GCATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 GCATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80049760 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATAT
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATAT
*
80049823 GCATATGTGGTAAAGCCGAATGGCTAATGCGAAATA
66 GCATATGTGGTAAAGCCGAATGGCTAATGTG--A-A
* * *
80049859 TATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATGAGA
*
80049924 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
63 TATGCATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
80049960 ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATA
* *
80050024 TGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
65 TGCATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80050058 ATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATAT
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
80050110 GTAGGCGATG
Statistics
Matches: 325, Mismatches: 15, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
96 92 0.28
98 97 0.30
99 5 0.02
100 84 0.26
101 1 0.00
102 2 0.01
103 1 0.00
104 43 0.13
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (98 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATAT
GCATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:80050128 original size:98 final size:97
Alignment explanation
Indices: 80049664--80050112 Score: 654
Period size: 100 Copynumber: 4.6 Consensus size: 97
80049654 ATATATATAT
*
80049664 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA-TATG
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAGTATG
*
80049728 CATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
80049760 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA-TATG
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAGTATG
* *
80049824 CATATGTGGTAAAGCCGAATGGCTAATGCGAAATA
66 TATATGTGGTAAAGCCGAATGGCTAATGTG--A-A
* * * * *
80049859 TATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT-GA-GAG-
80049924 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80049960 ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATAT-ATGAGAT
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTATGA-GAG-T
*
80050023 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
63 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
80050058 ATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
80050113 GGCGATGTGT
Statistics
Matches: 326, Mismatches: 17, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
96 92 0.28
98 91 0.28
99 3 0.01
100 103 0.32
101 2 0.01
102 3 0.01
104 32 0.10
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (97 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAGTATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:80050128 original size:248 final size:248
Alignment explanation
Indices: 80049660--80050109 Score: 778
Period size: 248 Copynumber: 1.8 Consensus size: 248
80049650 ATATATATAT
80049660 ATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
80049725 ATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
66 ATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAG
80049790 CCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGCGA
131 CCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGCGA
* *
80049855 AATATATATATATGAGATATGTATA-TGTGGTAAAGCTGAATGGTTAATGTGAA
196 AATATATAGAGAT-AGATATGTATATTGTGGTAAAGCTGAATGGTTAATGTGAA
80049908 ATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
80049973 ATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTA
66 ATGCATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTA
* * * *
80050037 AAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTG
128 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATG
*
80050102 TGAAATAT
193 CGAAATAT
80050110 GTAGGCGATG
Statistics
Matches: 193, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
247 1 0.01
248 96 0.50
249 2 0.01
250 94 0.49
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (248 bp):
ATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
ATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAG
CCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGCGA
AATATATAGAGATAGATATGTATATTGTGGTAAAGCTGAATGGTTAATGTGAA
Found at i:80050367 original size:37 final size:37
Alignment explanation
Indices: 80050259--80050367 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
80050249 GGAAATATAT
*
80050259 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
80050296 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
* *
80050333 TCCGAGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
80050368 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:80053656 original size:40 final size:40
Alignment explanation
Indices: 80053554--80053656 Score: 161
Period size: 40 Copynumber: 2.6 Consensus size: 40
80053544 TAGTTTGATA
* * **
80053554 ATTGAGTTGCTAGACTTTATTAAACTCATCTTAGTTAATT
1 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
80053594 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
1 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
*
80053634 ATTGATTTGCTGGACTTCATTTT
1 ATTGATTTGCTGGACTTTATTTT
80053657 CATTAAACTC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.24, C:0.13, G:0.14, T:0.50
Consensus pattern (40 bp):
ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
Found at i:80055444 original size:13 final size:13
Alignment explanation
Indices: 80055428--80055454 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80055418 TTTAAATACC
80055428 AAATTAAATTTTG
1 AAATTAAATTTTG
80055441 AAATTAAATTTTG
1 AAATTAAATTTTG
80055454 A
1 A
80055455 TATCAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
AAATTAAATTTTG
Found at i:80055544 original size:2 final size:2
Alignment explanation
Indices: 80055537--80055578 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
80055527 CTTACAAAAG
80055537 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80055579 TACAAAACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80056351 original size:21 final size:22
Alignment explanation
Indices: 80056319--80056364 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
80056309 ATTAAAAAAT
80056319 AAATTAATTATTT-T-AATTAA
1 AAATTAATTATTTCTAAATTAA
*
80056339 AAATTTATCTATTTCTAAATTAA
1 AAATTAAT-TATTTCTAAATTAA
80056362 AAA
1 AAA
80056365 CTAGCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 5 0.23
22 1 0.05
23 9 0.41
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (22 bp):
AAATTAATTATTTCTAAATTAA
Found at i:80056461 original size:24 final size:23
Alignment explanation
Indices: 80056432--80056504 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 23
80056422 ATAGACATCT
80056432 ATTTTTAATAGTAAAAATAAATAA
1 ATTTTTAATA-TAAAAATAAATAA
* * * *
80056456 ATTTTTAACAAAAAAATTAATTTA
1 ATTTTTAATATAAAAA-TAAATAA
*
80056480 ATTTTTAATAT-AATATAAATAA
1 ATTTTTAATATAAAAATAAATAA
80056502 ATT
1 ATT
80056505 AATTTATCTA
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 23 0.59
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (23 bp):
ATTTTTAATATAAAAATAAATAA
Found at i:80069391 original size:21 final size:21
Alignment explanation
Indices: 80069367--80069429 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
80069357 TCATAATTGG
80069367 CAATGAGTAATAATAATGCGC
1 CAATGAGTAATAATAATGCGC
**
80069388 CAAT-CTTAA-AAGT-ATG-G-
1 CAATGAGTAATAA-TAATGCGC
80069405 CAATGAGTAATAATAATGCGC
1 CAATGAGTAATAATAATGCGC
80069426 CAAT
1 CAAT
80069430 CTTAAAAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
17 4 0.12
18 5 0.16
19 10 0.31
20 5 0.16
21 8 0.25
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.25
Consensus pattern (21 bp):
CAATGAGTAATAATAATGCGC
Found at i:80069415 original size:38 final size:38
Alignment explanation
Indices: 80069364--80069440 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
80069354 GGGTCATAAT
80069364 TGGCAATGAGTAATAATAATGCGCCAATCTTAAAAGTA
1 TGGCAATGAGTAATAATAATGCGCCAATCTTAAAAGTA
80069402 TGGCAATGAGTAATAATAATGCGCCAATCTTAAAAGTA
1 TGGCAATGAGTAATAATAATGCGCCAATCTTAAAAGTA
80069440 T
1 T
80069441 TTTAAGGCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (38 bp):
TGGCAATGAGTAATAATAATGCGCCAATCTTAAAAGTA
Found at i:80071070 original size:18 final size:18
Alignment explanation
Indices: 80071047--80071085 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
80071037 TACGAAATGG
80071047 AGTTTGTAAGGCTAAGTC
1 AGTTTGTAAGGCTAAGTC
80071065 AGTTTGTAAGGCTAAGTC
1 AGTTTGTAAGGCTAAGTC
80071083 AGT
1 AGT
80071086 ATGCGACTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.33
Consensus pattern (18 bp):
AGTTTGTAAGGCTAAGTC
Found at i:80083631 original size:29 final size:29
Alignment explanation
Indices: 80083598--80083662 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
80083588 GTGACGAGAT
*
80083598 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
80083627 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
80083656 CGGCACT
1 TGGCACT
80083663 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:80090298 original size:24 final size:24
Alignment explanation
Indices: 80090258--80090319 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
80090248 GATTATGTAG
80090258 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
80090282 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
80090307 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
80090320 AAAAAAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Found at i:80091517 original size:29 final size:29
Alignment explanation
Indices: 80091484--80091548 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
80091474 GTGACGAGAT
*
80091484 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
80091513 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
80091542 CGGCACT
1 TGGCACT
80091549 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:80095960 original size:11 final size:11
Alignment explanation
Indices: 80095946--80095970 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80095936 TTCATTTTTC
80095946 TTTAATATTAG
1 TTTAATATTAG
80095957 TTTAATATTAG
1 TTTAATATTAG
80095968 TTT
1 TTT
80095971 TTATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (11 bp):
TTTAATATTAG
Found at i:80098035 original size:13 final size:13
Alignment explanation
Indices: 80098017--80098056 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
80098007 AGAGCAATCG
*
80098017 CACACGGGCGTGT
1 CACACGAGCGTGT
80098030 CACACGAGCGTGT
1 CACACGAGCGTGT
80098043 CACACGAGCGTGT
1 CACACGAGCGTGT
80098056 C
1 C
80098057 CCTATCGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.20, C:0.33, G:0.33, T:0.15
Consensus pattern (13 bp):
CACACGAGCGTGT
Found at i:80107691 original size:25 final size:25
Alignment explanation
Indices: 80107647--80107723 Score: 120
Period size: 25 Copynumber: 3.1 Consensus size: 25
80107637 GCTTAGCCTC
*
80107647 TTTTAATAAA-TGGGGCAAAGCCCT
1 TTTTGATAAACTGGGGCAAAGCCCT
80107671 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTGATAAACTGGGGCAAAGCCCT
* *
80107696 TTTCGATAAACTGGGGCATAGCCCT
1 TTTTGATAAACTGGGGCAAAGCCCT
80107721 TTT
1 TTT
80107724 AGCACTTCCT
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
24 9 0.18
25 40 0.82
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (25 bp):
TTTTGATAAACTGGGGCAAAGCCCT
Found at i:80107955 original size:27 final size:27
Alignment explanation
Indices: 80107925--80108221 Score: 382
Period size: 27 Copynumber: 11.0 Consensus size: 27
80107915 AGGGCAAAAT
* * *
80107925 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
80107952 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
80107979 GATATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
80108006 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
80108033 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
80108060 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
80108087 AGTAATTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
80108114 GGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
*
80108141 AGTAATTCTACCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* ***
80108168 AGTAATTCTACCCTATGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
80108195 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
80108222 AATATTTTAC
Statistics
Matches: 236, Mismatches: 31, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
26 3 0.01
27 230 0.97
28 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:80108222 original size:54 final size:54
Alignment explanation
Indices: 80107925--80108221 Score: 425
Period size: 54 Copynumber: 5.5 Consensus size: 54
80107915 AGGGCAAAAT
* * *
80107925 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
80107979 GATATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
80108033 GGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
80108087 AGTAATTCTACCCTACAAGAGTATTTCGGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * **
80108141 AGTAATTCTACCCTAC-AGAGGTATTTCAGTAATTCTACCCTATGGGGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
80108195 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
80108222 AATATTTTAC
Statistics
Matches: 220, Mismatches: 21, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
53 2 0.01
54 217 0.99
55 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:80108308 original size:54 final size:53
Alignment explanation
Indices: 80108225--80108432 Score: 209
Period size: 54 Copynumber: 3.8 Consensus size: 53
80108215 GTATTTCAAT
* * * * *
80108225 ATTTTACAAATCGAGAGTATTTCGATAATTTCACAAATTAGGAGTATTTTGGTA
1 ATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAATTAGG-GTATTTTGGTA
* * *
80108279 ATTTTACAAGCCGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTA
1 ATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAATTA-GGGTATTTTGGTA
* * *
80108333 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAATCGAGGGTATTTTGGTA
1 ATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAAT-TAGGGTATTTTGGTA
** * * ** **
80108387 ATTTTGTAAACCAAGGGCATTTTATTAATTTTTTAAATTAAGGGTA
1 ATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAATT-AGGGTA
80108433 AAACGGTATT
Statistics
Matches: 128, Mismatches: 23, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
54 125 0.98
55 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (53 bp):
ATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAATTAGGGTATTTTGGTA
Found at i:80108430 original size:81 final size:81
Alignment explanation
Indices: 80108250--80108432 Score: 226
Period size: 81 Copynumber: 2.3 Consensus size: 81
80108240 AGTATTTCGA
*
80108250 TAATTTCACAAATT-AGGAGTATTTTGGTAATTTTACAAGCCGAGGGTATTTTGGTAATTTTACA
1 TAATTTTACAAATTAAGG-GTATTTTGGTAATTTTACAAGCCGAGGGTATTTTGGTAATTTTACA
* * *
80108314 AACTAGGGGTATTTTAG
65 AACCAAGGGCATTTTAG
** * **
80108331 TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAA-TCGAGGGTATTTTGGTAATTTTGTA
1 TAATTTTACAAATTAAGGGTATTTTGGTAATTTTAC-AAGCCGAGGGTATTTTGGTAATTTTACA
*
80108395 AACCAAGGGCATTTTAT
65 AACCAAGGGCATTTTAG
**
80108412 TAATTTTTTAAATTAAGGGTA
1 TAATTTTACAAATTAAGGGTA
80108433 AAACGGTATT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
81 81 0.94
82 5 0.06
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
TAATTTTACAAATTAAGGGTATTTTGGTAATTTTACAAGCCGAGGGTATTTTGGTAATTTTACAA
ACCAAGGGCATTTTAG
Found at i:80108475 original size:80 final size:81
Alignment explanation
Indices: 80108383--80108557 Score: 181
Period size: 80 Copynumber: 2.2 Consensus size: 81
80108373 AGGGTATTTT
* *** * * * *
80108383 GGTAATTTTGTAAACCAAGGGCATTTTATTAATTTTTTAAATTAAGGGTAAAACGGT-ATTCTGT
1 GGTAATTCTGTAAACCAAGGGCAAAATAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
*
80108447 AAATCGAGGGTAAAAC
66 AAATCGAGAGTAAAAC
* * * * *
80108463 GGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTCTGTAAACCAAGGGCAAAATAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
* * *
80108528 AAATTGAGAGTAACAT
66 AAATCGAGAGTAAAAC
*
80108544 GGTAATTCTATAAA
1 GGTAATTCTGTAAA
80108558 TCGAGGGTAC
Statistics
Matches: 76, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
80 44 0.58
81 32 0.42
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.33
Consensus pattern (81 bp):
GGTAATTCTGTAAACCAAGGGCAAAATAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
AAATCGAGAGTAAAAC
Found at i:80108478 original size:27 final size:27
Alignment explanation
Indices: 80108427--80108566 Score: 210
Period size: 27 Copynumber: 5.2 Consensus size: 27
80108417 TTTTAAATTA
80108427 AGGGTAAAACGGT-ATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
80108453 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
80108480 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
80108507 AGGGTAAAACGGTAATTCTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * * *
80108534 AGAGTAACATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
80108561 AGGGTA
1 AGGGTA
80108567 CTTTGGTAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 13 0.13
27 89 0.87
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATCG
Found at i:80108573 original size:27 final size:27
Alignment explanation
Indices: 80108225--80108605 Score: 185
Period size: 27 Copynumber: 14.1 Consensus size: 27
80108215 GTATTTCAAT
* * * *
80108225 ATTTTACAAATCGAGAGTATTTCGATA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * *
80108252 ATTTCACAAAT-TAGGAGTATTTTGGTA
1 ATTTTATAAATCGAGG-GTATTTTGGTA
* **
80108279 ATTTTACAAGCCGAGGGTATTTTGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * *
80108306 ATTTTACAAA-CTAGGGGTATTTTAGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
* * *
80108333 ATTTTACAAACCAAGGGTATTTTGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
80108360 ATTTTACT-AATCGAGGGTATTTTGGTA
1 ATTTTA-TAAATCGAGGGTATTTTGGTA
* * * * **
80108387 ATTTTGTAAACCAAGGGCATTTTATTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ** ****
80108414 ATTTTTTAAATTAAGGGTAAAACGGT-
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ****
80108440 ATTCTGTAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
80108467 ATTCTGTAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
80108494 ATTCTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * * ***
80108521 ATTCTGTAAATTGAGAGTAACATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* *
80108548 ATTCTATAAATCGAGGGTACTTTGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * *
80108575 ATTTTACAAATTGAGGGCATTTTAGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
80108602 ATTT
1 ATTT
80108606 GGTAAACTAA
Statistics
Matches: 290, Mismatches: 57, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
26 27 0.09
27 258 0.89
28 5 0.02
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
ATTTTATAAATCGAGGGTATTTTGGTA
Found at i:80108574 original size:81 final size:80
Alignment explanation
Indices: 80108427--80108591 Score: 222
Period size: 81 Copynumber: 2.0 Consensus size: 80
80108417 TTTTAAATTA
* *
80108427 AGGGTAAAACGGTATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
1 AGGGTAAAACGGTATTCTGTAAATCGAGAGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGG
*
80108492 TAATTCTATAAATCG
66 TAATTCTACAAATCG
* * * ***
80108507 AGGGTAAAACGGTAATTCTGTAAATTGAGAGTAACATGGTAATTCTATAAATCGAGGGTACTTTG
1 AGGGTAAAACGGT-ATTCTGTAAATCGAGAGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
* *
80108572 GTAATTTTACAAATTG
65 GTAATTCTACAAATCG
80108588 AGGG
1 AGGG
80108592 CATTTTAGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 13 0.18
81 60 0.82
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (80 bp):
AGGGTAAAACGGTATTCTGTAAATCGAGAGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGG
TAATTCTACAAATCG
Found at i:80110970 original size:24 final size:25
Alignment explanation
Indices: 80110943--80110995 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
80110933 TTGAAGGCCT
80110943 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCCTCTTTTAATAAACTGGGGCAA
* *
80110967 AGCCTTTTTTGATAAACTGGGGCAA
1 AGCCTCTTTTAATAAACTGGGGCAA
80110992 AGCC
1 AGCC
80110996 CATTTCGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (25 bp):
AGCCTCTTTTAATAAACTGGGGCAA
Found at i:80111007 original size:25 final size:25
Alignment explanation
Indices: 80110956--80111021 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
80110946 CTCTTTTAAT
** *
80110956 AACTGGGGCAAAGCCTTTTTTGATA
1 AACTGGGGCAAAGCCCATTTCGATA
*
80110981 AACTGGGGCAAAGCCCATTTCGGTA
1 AACTGGGGCAAAGCCCATTTCGATA
* * *
80111006 AATTGAGGCATAGCCC
1 AACTGGGGCAAAGCCC
80111022 TTTTAGCACT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCATTTCGATA
Found at i:80111258 original size:27 final size:27
Alignment explanation
Indices: 80111228--80111416 Score: 243
Period size: 27 Copynumber: 7.0 Consensus size: 27
80111218 GGGGCAAAAT
* * * *
80111228 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80111255 GGTAATTCTACCCTACAGAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
80111282 GATATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80111309 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
80111336 GGTAATTCTACTTTATAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80111363 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80111390 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80111417 AATATTTTAC
Statistics
Matches: 142, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80111489 original size:80 final size:79
Alignment explanation
Indices: 80111377--80111560 Score: 183
Period size: 80 Copynumber: 2.3 Consensus size: 79
80111367 ATTCTACCCT
* * *** **
80111377 ACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATATTTTACAAATTGAGAGG-ATT
1 ACAGGGGTATTTTGGTAATTTTACAAGACAGGGGTATTTCAATATTTTACAAA-CCAGAGGTATT
80111441 TT-GTTAATTTCACAA
65 TTAG-TAATTTCACAA
* *** ** *
80111456 ATCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTATTTTACTCACCAGGGGTATT
1 A-CAGGGGTATTTTGGTAATTTTACAAGACAGGGGTATTTCAATATTTTACAAACCAGAGGTATT
*
80111521 TTAGTAATTTTACAA
65 TTAGTAATTTCACAA
80111536 ACTAGGGGTATTTTGGTAATTTTAC
1 AC-AGGGGTATTTTGGTAATTTTAC
80111561 TAATCGATGG
Statistics
Matches: 86, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
79 6 0.07
80 79 0.92
81 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (79 bp):
ACAGGGGTATTTTGGTAATTTTACAAGACAGGGGTATTTCAATATTTTACAAACCAGAGGTATTT
TAGTAATTTCACAA
Found at i:80111513 original size:26 final size:27
Alignment explanation
Indices: 80111438--80111612 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
80111428 AATTGAGAGG
* * * *
80111438 ATTTTGTTAATTTCACAAATCAGGGGT
1 ATTTTGGTAATTTTACTAACCAGGGGT
80111465 ATTTTGGTAATTTTAC-AAGCCAGGGGT
1 ATTTTGGTAATTTTACTAA-CCAGGGGT
*
80111492 ATTTTGGT-ATTTTACTCACCAGGGGT
1 ATTTTGGTAATTTTACTAACCAGGGGT
* * *
80111518 ATTTTAGTAATTTTACAAACTAGGGGT
1 ATTTTGGTAATTTTACTAACCAGGGGT
* *
80111545 ATTTTGGTAATTTTACTAATC-GATGGT
1 ATTTTGGTAATTTTACTAACCAG-GGGT
* *
80111572 ATTTTGGTAATTTT-GTAAACCAAGGGT
1 ATTTTGGTAATTTTACT-AACCAGGGGT
**
80111599 ATTTCAGTAATTTT
1 ATTTTGGTAATTTT
80111613 GTAAATTGAG
Statistics
Matches: 123, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 26 0.21
27 97 0.79
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (27 bp):
ATTTTGGTAATTTTACTAACCAGGGGT
Found at i:80111582 original size:54 final size:54
Alignment explanation
Indices: 80111438--80111612 Score: 192
Period size: 54 Copynumber: 3.3 Consensus size: 54
80111428 AATTGAGAGG
* * * * *
80111438 ATTTTGTTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGT
1 ATTTTGGTAATTTTACTAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGT
* * *
80111492 ATTTTGGT-ATTTTACTCACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGT
1 ATTTTGGTAATTTTACTAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGT
* * ** *
80111545 ATTTTGGTAATTTTACTAATC-GATGGTATTTTGGTAATTTTGTAAACCAAGGGT
1 ATTTTGGTAATTTTACTAACCAG-GGGTATTTTGGTAATTTTACAAACCAGGGGT
**
80111599 ATTTCAGTAATTTT
1 ATTTTGGTAATTTT
80111613 GTAAATTGAG
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 47 0.47
54 54 0.53
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (54 bp):
ATTTTGGTAATTTTACTAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGT
Found at i:80111637 original size:54 final size:53
Alignment explanation
Indices: 80111605--80111786 Score: 229
Period size: 54 Copynumber: 3.4 Consensus size: 53
80111595 GGGTATTTCA
* * * *
80111605 GTAATTTTGTAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGT-AAATG
* * * *
80111659 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGT-AAATG
**
80111713 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTACTTTG
1 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTA-AATG
* *
80111767 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATTGAGGG
80111787 CATTTCAGTA
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 112 0.99
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (53 bp):
GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAATG
Found at i:80111647 original size:81 final size:80
Alignment explanation
Indices: 80111576--80111786 Score: 278
Period size: 81 Copynumber: 2.6 Consensus size: 80
80111566 GATGGTATTT
* * * * * *
80111576 TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATTGAGGGTAAAACGATAATTCTG
1 TGGTAATTCTGTAAATCGAGGGTATTT-GGTAATTTTATAAATTGAGGGTAAAACGATAATTCTA
80111641 TAAATCGAGGGTAAAA
65 TAAATCGAGGGTAAAA
** * * *
80111657 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGT-ATTTGGTAATTTTATAAATTGAGGGTAAAACGATAATTCTA
*
80111722 TAAATTGAGGGTAAAA
65 TAAATCGAGGGTAAAA
*
80111738 TGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGG
1 TGGTAATTCTGTAAATCGAGGGTA-TTTGGTAATTTTATAAATTGAGGG
80111787 CATTTCAGTA
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 108 0.97
82 2 0.02
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.33
Consensus pattern (80 bp):
TGGTAATTCTGTAAATCGAGGGTATTTGGTAATTTTATAAATTGAGGGTAAAACGATAATTCTAT
AAATCGAGGGTAAAA
Found at i:80111772 original size:27 final size:27
Alignment explanation
Indices: 80111605--80111761 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
80111595 GGGTATTTCA
* * *
80111605 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
80111632 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
80111659 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
80111686 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
80111713 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
80111740 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
80111762 CTTTGGTAAT
Statistics
Matches: 119, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 119 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:80111780 original size:27 final size:27
Alignment explanation
Indices: 80111420--80111800 Score: 153
Period size: 27 Copynumber: 14.1 Consensus size: 27
80111410 GTATTTCAAT
* *
80111420 ATTTTACAAATTGAGAGG-ATTTTGTTA
1 ATTTTACAAATCGAG-GGTATTTTGGTA
*
80111447 ATTTCACAAATC-AGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
* *
80111474 ATTTTAC-AAGCCAGGGGTATTTTGGT-
1 ATTTTACAAATCGA-GGGTATTTTGGTA
** * *
80111500 ATTTTACTCA-CCAGGGGTATTTTAGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
*
80111527 ATTTTACAAA-CTAGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
* *
80111554 ATTTTACTAATCGATGGTATTTTGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
** * * **
80111581 ATTTTGTAAACCAAGGGTATTTCAGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
** * **** *
80111608 ATTTTGTAAATTGAGGGTAAAACGATA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* ** ***
80111635 ATTCTGTAAATCGAGGGTAAAATGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* ** ***
80111662 ATTCTGTAAATCGAGGGTAAAATGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* * ****
80111689 ATTCTATAAATCGAGGGTAAAACGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* * * ***
80111716 ATTCTATAAATTGAGGGTAAAATGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* ** *
80111743 ATTCTGTAAATCGAGGGTACTTTGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* * **
80111770 ATTTTACAAATTGAGGGCATTTCAGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
80111797 ATTT
1 ATTT
80111801 AGTAAACTAA
Statistics
Matches: 297, Mismatches: 51, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
26 28 0.09
27 267 0.90
28 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.37
Consensus pattern (27 bp):
ATTTTACAAATCGAGGGTATTTTGGTA
Found at i:80113584 original size:26 final size:26
Alignment explanation
Indices: 80113548--80113632 Score: 116
Period size: 26 Copynumber: 3.3 Consensus size: 26
80113538 CTTATCTGGG
* * * *
80113548 TAATCAAAAAGTTCACAAAGAACTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
80113574 TAATCAGAAAGCTCACGAAGAGCTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
*
80113600 TCATCAGAAAGCTCACGAAGAGCTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
*
80113626 TCATCAG
1 TAATCAG
80113633 GAGCTCCGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (26 bp):
TAATCAGAAAGCTCACGAAGAGCTTT
Found at i:80113760 original size:65 final size:65
Alignment explanation
Indices: 80113678--80113828 Score: 203
Period size: 65 Copynumber: 2.3 Consensus size: 65
80113668 GAGCCATATC
* ** * *
80113678 AGGATGCTCACAAAGAGCTGTGTTTGAGTTTGCAACATATGCAGGATCACAACCGATTATAAAAT
1 AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
* * * * *
80113743 AGGATGCTCACACAGAGCTGCGTTTGTGTCCGCAATATAAGCAGGATCATAACCGATCATATAAT
1 AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
*
80113808 AGGACGCTCACAAAGAGCTGC
1 AGGATGCTCACAAAGAGCTGC
80113829 AATAGTCCTC
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 74 1.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (65 bp):
AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
Found at i:80115529 original size:40 final size:40
Alignment explanation
Indices: 80115449--80115629 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
80115439 ACCCAAGTTT
* * * *
80115449 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * * *
80115488 CTTCGGGTCTTAACCCGGACATAGCAACTCGTACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
80115528 CTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
80115568 CTTTGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
80115608 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
80115630 CATTCAAATG
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 112 0.91
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:80119236 original size:22 final size:22
Alignment explanation
Indices: 80119211--80119261 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
80119201 CATTAGGGAC
80119211 TATGTGATCTGAGCTCATGAGT
1 TATGTGATCTGAGCTCATGAGT
*
80119233 TATGTGGTCTGAGCTCATGAGT
1 TATGTGATCTGAGCTCATGAGT
80119255 TATGTGA
1 TATGTGA
80119262 CACATGTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.12, G:0.29, T:0.37
Consensus pattern (22 bp):
TATGTGATCTGAGCTCATGAGT
Found at i:80123625 original size:40 final size:40
Alignment explanation
Indices: 80123445--80123625 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 40
80123435 ACATTCAAAT
* * * *
80123445 GCCTTCGGGACATAGCCCGGTTACAGTAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
* * * * *
80123485 GCCTTCGGGACTTAACCCGAATTTAGTAGCTCGCTCGAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
* * * *
80123525 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTTGCACGAAT
1 GCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCACGAAA
* * * *
80123565 GCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACGAAA
80123605 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
80123626 CATCATTCGA
Statistics
Matches: 115, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.03
40 104 0.90
41 8 0.07
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
Found at i:80138943 original size:40 final size:40
Alignment explanation
Indices: 80138816--80138945 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
80138806 ATGCTGGAAA
* *
80138816 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
80138856 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
80138896 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
80138936 TTATATCCGG
1 TTATATCCGG
80138946 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:80141727 original size:40 final size:40
Alignment explanation
Indices: 80141682--80141865 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 40
80141672 TACACATTCA
* *
80141682 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACG
* * *
80141722 AATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
* * *
80141762 AAAGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * * * *
80141802 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACG
* *
80141842 AAAGCCTTCAGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
80141866 CATCATTCGA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 107 0.89
41 10 0.08
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Found at i:80144042 original size:24 final size:23
Alignment explanation
Indices: 80144011--80144056 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
80144001 CAATATAATA
*
80144011 GGAAGCTCACCAAGAGCCATATCG
1 GGAAGCTCACAAAGAGCC-TATCG
80144035 GGAAGCTCACAAAGAGCCTATC
1 GGAAGCTCACAAAGAGCCTATC
80144057 AAGAAGCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.35, C:0.28, G:0.24, T:0.13
Consensus pattern (23 bp):
GGAAGCTCACAAAGAGCCTATCG
Found at i:80144062 original size:23 final size:24
Alignment explanation
Indices: 80144012--80144064 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
80144002 AATATAATAG
* **
80144012 GAAGCTCACCAAGAGCCATATCGG
1 GAAGCTCACAAAGAGCCATATCAA
80144036 GAAGCTCACAAAGAGCC-TATCAA
1 GAAGCTCACAAAGAGCCATATCAA
80144059 GAAGCT
1 GAAGCT
80144065 TATCTGGGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.38, C:0.26, G:0.23, T:0.13
Consensus pattern (24 bp):
GAAGCTCACAAAGAGCCATATCAA
Found at i:80146818 original size:15 final size:15
Alignment explanation
Indices: 80146798--80146829 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80146788 AAACCTATAG
*
80146798 AAGTTAAATTAAACT
1 AAGTTAAATAAAACT
80146813 AAGTTAAATAAAACT
1 AAGTTAAATAAAACT
80146828 AA
1 AA
80146830 CAGAATTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGTTAAATAAAACT
Found at i:80150439 original size:27 final size:27
Alignment explanation
Indices: 80150409--80150549 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
80150399 GTGATGAAGT
80150409 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
80150436 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* * *
80150463 CACTAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
80150490 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
80150517 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
80150544 CACCAG
1 CACCAG
80150550 GACGCTTCCT
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 10 0.10
27 86 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:80150493 original size:54 final size:54
Alignment explanation
Indices: 80150409--80150549 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
80150399 GTGATGAAGT
*
80150409 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
80150463 CACTAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
80150517 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
80150550 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:80150716 original size:28 final size:26
Alignment explanation
Indices: 80150654--80150716 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
80150644 AAAGTAACCC
** * *
80150654 TAGGGGTATAATGGTAATTTTGCTCC
1 TAGGGGTATAACAGTAATTTTCCTCA
80150680 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC-T-CA
80150708 TAGGGGTAT
1 TAGGGGTAT
80150717 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
27 1 0.03
28 10 0.32
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCTCA
Found at i:80152186 original size:26 final size:26
Alignment explanation
Indices: 80152155--80152262 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
80152145 TGAAATTTCC
80152155 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80152181 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
80152207 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
80152233 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
80152259 ATCA
1 ATCA
80152263 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80155738 original size:30 final size:30
Alignment explanation
Indices: 80155702--80155803 Score: 111
Period size: 28 Copynumber: 3.5 Consensus size: 30
80155692 GACAAGATTG
* *
80155702 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGGGTTTAAAATTATATA
* * *
80155732 GCACTAAGTGTGCGCGTTT--GATTCTATA
1 GCACTAAGTGTGCGGGTTTAAAATTATATA
* * *
80155760 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGGGTTTAAAATTATATA
80155789 GCACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
80155804 ATTCACTATA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 22 0.37
29 19 0.32
30 19 0.32
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGGGTTTAAAATTATATA
Found at i:80155814 original size:29 final size:28
Alignment explanation
Indices: 80155731--80155806 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
80155721 AAAATTGTAC
* *
80155731 AGCACTAAGTGTGCGCGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
80155759 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
80155788 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
80155807 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:80158011 original size:27 final size:27
Alignment explanation
Indices: 80157981--80158035 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
80157971 TATGGAAGGA
80157981 TGATAATACTAGAAAGAACATATGTTT
1 TGATAATACTAGAAAGAACATATGTTT
* *
80158008 TGATAGTATTAGAAAGAACATATGTTT
1 TGATAATACTAGAAAGAACATATGTTT
80158035 T
1 T
80158036 CTCTCTCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.36
Consensus pattern (27 bp):
TGATAATACTAGAAAGAACATATGTTT
Found at i:80190209 original size:13 final size:13
Alignment explanation
Indices: 80190191--80190217 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80190181 GGAGCAATCG
80190191 CACACGGGCGTGT
1 CACACGGGCGTGT
80190204 CACACGGGCGTGT
1 CACACGGGCGTGT
80190217 C
1 C
80190218 TTTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:80190610 original size:12 final size:13
Alignment explanation
Indices: 80190574--80190611 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
80190564 AAATATTTGA
80190574 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
80190587 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
80190601 CTTG-TCTTAAT
1 CTTGTTCTTAAT
80190612 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:80192989 original size:26 final size:26
Alignment explanation
Indices: 80192960--80193067 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80192950 TGGTACAAAT
80192960 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80192986 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80193012 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80193038 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80193064 TGAT
1 TGAT
80193068 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80194729 original size:27 final size:27
Alignment explanation
Indices: 80194689--80194802 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
80194679 AGGAAGCGTC
*
80194689 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
80194716 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
80194743 CTGGTGGCTATGCCACGATTATATGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
80194770 CTGGTGGCTCTACCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
80194797 CTGGTG
1 CTGGTG
80194803 ACTTTGTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.09
27 65 0.88
28 2 0.03
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:80194771 original size:54 final size:54
Alignment explanation
Indices: 80194689--80194802 Score: 176
Period size: 54 Copynumber: 2.1 Consensus size: 54
80194679 AGGAAGCGTC
* * *
80194689 CTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAATTATATGATCTGGTGGCTCTACCACA-ATATCTGTAT
*
80194743 CTGGTGGCTATGCCACGATTATATGATCTGGTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTATGCCACAATTATATGATCTGGTGGCTCTACCACAATATCTGTAT
80194797 CTGGTG
1 CTGGTG
80194803 ACTTTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 8 0.15
54 47 0.85
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATATGATCTGGTGGCTCTACCACAATATCTGTAT
Found at i:80194813 original size:27 final size:26
Alignment explanation
Indices: 80194689--80194820 Score: 129
Period size: 27 Copynumber: 4.9 Consensus size: 26
80194679 AGGAAGCGTC
* *
80194689 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
80194716 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
* * *
80194743 CTGGTGGCTATGCCACGATTATATGAT
1 CTGGTGGCTCTGCCAC-AATATCTGAT
*
80194770 CTGGTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* * * *
80194797 CTGGTGACTTTGTCACAGTATCTG
1 CTGGTGGCTCTGCCACAATATCTG
80194821 GCAGCCTCGC
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
26 6 0.07
27 78 0.91
28 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:80195823 original size:17 final size:16
Alignment explanation
Indices: 80195792--80195822 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80195782 GGTTTACAAA
*
80195792 AAAAACAAAGATTTTC
1 AAAAACAAAAATTTTC
80195808 AAAAACAAAAATTTT
1 AAAAACAAAAATTTT
80195823 TTTATAAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26
Consensus pattern (16 bp):
AAAAACAAAAATTTTC
Found at i:80198313 original size:40 final size:40
Alignment explanation
Indices: 80198269--80198416 Score: 237
Period size: 40 Copynumber: 3.7 Consensus size: 40
80198259 GCTACTTGGT
80198269 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
80198309 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
80198349 CAAATGCCTTCCGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
80198388 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
80198417 CATCCAAATA
Statistics
Matches: 99, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.33
40 64 0.65
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:80198367 original size:79 final size:80
Alignment explanation
Indices: 80198269--80198416 Score: 237
Period size: 79 Copynumber: 1.9 Consensus size: 80
80198259 GCTACTTGGT
* * *
80198269 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCCGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
80198333 GTTATAGTAACTCGCA
65 GTTATAGTAACTCGCA
*
80198349 CAAATGCCTTCCGG-CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCCGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
80198413 TTAT
66 TTAT
80198417 CATCCAAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
79 49 0.78
80 14 0.22
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCCGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
TTATAGTAACTCGCA
Found at i:80203263 original size:26 final size:26
Alignment explanation
Indices: 80203234--80203341 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80203224 TGGTACAAAT
80203234 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80203260 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80203286 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80203312 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80203338 TGAT
1 TGAT
80203342 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80205006 original size:27 final size:27
Alignment explanation
Indices: 80204950--80205104 Score: 198
Period size: 27 Copynumber: 5.9 Consensus size: 27
80204940 AGGAAGCGTC
* * *
80204950 CTGGTGGCTATGCCAAAT-TATCTGAT
1 CTGGTGGCTCTGCCACATATATCTGTT
80204976 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
* *
80205003 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGTT
80205030 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
80205057 CT-GTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTGT-T
80205083 CTGGT-GCTCTG-CACA-ATATCTG
1 CTGGTGGCTCTGCCACATATATCTG
80205105 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
25 19 0.16
26 41 0.35
27 55 0.47
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:80205034 original size:54 final size:53
Alignment explanation
Indices: 80204950--80205104 Score: 237
Period size: 54 Copynumber: 3.0 Consensus size: 53
80204940 AGGAAGCGTC
*
80204950 CTGGTGGCTATGCCAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
80205003 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
80205057 CT-GTGGCTCTGCCACAATATCTGTATCTGGT-GCTCTG-CACA-ATATCTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTGGCTCTGCCACATATATCTG
80205105 GCAGCCTCGC
Statistics
Matches: 97, Mismatches: 3, Indels: 7
0.91 0.03 0.07
Matches are distributed among these distances:
50 7 0.07
51 4 0.04
52 13 0.13
53 34 0.35
54 39 0.40
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:80214831 original size:40 final size:40
Alignment explanation
Indices: 80214786--80214952 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80214776 CGGAATATAA
80214786 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80214826 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80214866 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80214906 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80214945 CCGGATAT
1 CCGGATAT
80214953 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80222801 original size:40 final size:40
Alignment explanation
Indices: 80222756--80222923 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80222746 CGGAATATAA
80222756 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80222796 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
80222836 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
80222876 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80222916 CCGGATAT
1 CCGGATAT
80222924 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80224755 original size:13 final size:13
Alignment explanation
Indices: 80224737--80224766 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
80224727 GCTCAGCAGG
80224737 GACACGCCCGTGT
1 GACACGCCCGTGT
*
80224750 GACACGGCCGTGT
1 GACACGCCCGTGT
80224763 GACA
1 GACA
80224767 TGATTGCCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.33, G:0.33, T:0.13
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:80233325 original size:39 final size:39
Alignment explanation
Indices: 80233167--80233321 Score: 247
Period size: 39 Copynumber: 3.9 Consensus size: 39
80233157 TATGGTAACC
** *
80233167 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
80233207 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80233246 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
80233285 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
80233322 TTCGACATTC
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 91 0.85
40 16 0.15
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:80241159 original size:40 final size:39
Alignment explanation
Indices: 80241115--80241296 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
80241105 GTTCAAAACA
* * ** * *
80241115 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
80241155 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
80241195 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
80241234 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
80241273 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
80241297 CAATTCGACA
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:80241303 original size:39 final size:39
Alignment explanation
Indices: 80241145--80241299 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
80241135 TATGGTAACC
* *
80241145 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
80241185 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80241224 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
80241263 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
80241300 TTCGACATTC
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:80243168 original size:25 final size:25
Alignment explanation
Indices: 80243139--80243188 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
80243129 TAGTTAGCTA
80243139 GACTTCTTAGTTTCATGCTTCTTGC
1 GACTTCTTAGTTTCATGCTTCTTGC
80243164 GACTTCTTAGTTTCATGCTTCTTGC
1 GACTTCTTAGTTTCATGCTTCTTGC
80243189 TTAGGAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.24, G:0.16, T:0.48
Consensus pattern (25 bp):
GACTTCTTAGTTTCATGCTTCTTGC
Found at i:80248708 original size:43 final size:43
Alignment explanation
Indices: 80248660--80248760 Score: 157
Period size: 43 Copynumber: 2.3 Consensus size: 43
80248650 CCGTCCGGGC
* * *
80248660 TAAATCCTTTCTACACTGAGATTAATAGATTATCCATCTGGGT
1 TAAATCCTTTCTACACTAAGATTAATAGATTACCCACCTGGGT
*
80248703 TAAATCCTTTCTACACTAAGATTAATAGATTACCCGCCTGGGT
1 TAAATCCTTTCTACACTAAGATTAATAGATTACCCACCTGGGT
*
80248746 TAAATCCTTTTTACA
1 TAAATCCTTTCTACA
80248761 AAATATGCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (43 bp):
TAAATCCTTTCTACACTAAGATTAATAGATTACCCACCTGGGT
Found at i:80253294 original size:40 final size:40
Alignment explanation
Indices: 80253167--80253296 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
80253157 ATGCTGGAAA
* *
80253167 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
80253207 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
80253247 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
80253287 TTATATCCGG
1 TTATATCCGG
80253297 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:80258350 original size:2 final size:2
Alignment explanation
Indices: 80258343--80258377 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
80258333 AAGACTAGTC
80258343 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80258378 CATGTCATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80259665 original size:67 final size:63
Alignment explanation
Indices: 80259462--80259703 Score: 310
Period size: 63 Copynumber: 3.8 Consensus size: 63
80259452 CATATAGTTG
*
80259462 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCAT-CTGACCTAGCCAATTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGC-GACCTAGCCAATTTATCTCGTA
* *
80259525 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAATTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCCAATTTATCTCGTA
* * * * *
80259588 GCTCTCTTGTCTACATGGTGTCCTTCACTTAGAACCACGCATGCGACCTAGCTACATATATCTCG
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCCA-ATTTATCTCG
80259653 TA
62 TA
* *
80259655 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGC
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGC
80259704 TACATCATAA
Statistics
Matches: 160, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
62 1 0.01
63 79 0.49
64 24 0.15
66 25 0.16
67 31 0.19
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (63 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCCAATTTATCTCGTA
Found at i:80261225 original size:13 final size:13
Alignment explanation
Indices: 80261192--80261217 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80261182 AAATTTTCAC
80261192 ACAATCATGCAAT
1 ACAATCATGCAAT
80261205 ACAATCATGCAAT
1 ACAATCATGCAAT
80261218 CATATCATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
ACAATCATGCAAT
Found at i:80262248 original size:19 final size:20
Alignment explanation
Indices: 80262213--80262283 Score: 108
Period size: 20 Copynumber: 3.6 Consensus size: 20
80262203 ATTGTTGCGA
*
80262213 TATTTATGGCTTTGTGCCAC
1 TATTGATGGCTTTGTGCCAC
*
80262233 TACTGATGGC-TTGTGCCAC
1 TATTGATGGCTTTGTGCCAC
*
80262252 TATTGATGCCTTTGTGCCAC
1 TATTGATGGCTTTGTGCCAC
80262272 TATTGATGGCTT
1 TATTGATGGCTT
80262284 CGAGCCGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
19 17 0.38
20 28 0.62
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (20 bp):
TATTGATGGCTTTGTGCCAC
Found at i:80262998 original size:24 final size:24
Alignment explanation
Indices: 80262971--80263068 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
80262961 AAGGCTGTCA
80262971 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
80262995 GGAGAGGATTTAAGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
80263019 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
80263043 GGAGAAGTTTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
80263068 G
1 G
80263069 AGCAAAAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
24 63 0.95
25 3 0.05
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:80264495 original size:27 final size:25
Alignment explanation
Indices: 80264454--80264559 Score: 86
Period size: 27 Copynumber: 4.0 Consensus size: 25
80264444 GGAAGCGTCC
*
80264454 TGGTGGCTATGCCACAATTATCTGATT
1 TGGTGGCTCTGCCAC-ATTATCTG-TT
* *
80264481 TGGTGGCTCTACCACATACATCTGTT
1 TGGTGGCTCTGCCACAT-TATCTGTT
* *
80264507 CTAGTGGCTTTGCCACAATTATCTGTTT
1 -TGGTGGCTCTGCCAC-ATTATCTG-TT
* * *
80264535 TTGTGACTCTGTCACATTATCTGTT
1 TGGTGGCTCTGCCACATTATCTGTT
80264560 CTGGCAGCCA
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
25 2 0.03
26 12 0.19
27 46 0.72
28 4 0.06
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41
Consensus pattern (25 bp):
TGGTGGCTCTGCCACATTATCTGTT
Found at i:80264551 original size:54 final size:53
Alignment explanation
Indices: 80264456--80264561 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
80264446 AAGCGTCCTG
*
80264456 GTGGCTATGCCACAATTATCTGATTTGGTGGCTCTACCACATACATCTGTTCTA
1 GTGGCTATGCCACAATTATCTGATTTGGTGACTCTACCACAT-CATCTGTTCTA
* * * ** *
80264510 GTGGCTTTGCCACAATTATCTGTTTTTGTGACTCTGTCACATTATCTGTTCT
1 GTGGCTATGCCACAATTATCTGATTTGGTGACTCTACCACATCATCTGTTCT
80264562 GGCAGCCATG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 9 0.20
54 36 0.80
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (53 bp):
GTGGCTATGCCACAATTATCTGATTTGGTGACTCTACCACATCATCTGTTCTA
Found at i:80271728 original size:39 final size:40
Alignment explanation
Indices: 80271674--80271828 Score: 215
Period size: 39 Copynumber: 3.9 Consensus size: 40
80271664 TGTGTATGAA
**
80271674 TGTGCGAACTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
80271713 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* *
80271752 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
*** * *
80271792 TGTGCGAGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
80271829 GTTTGAACGA
Statistics
Matches: 105, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 63 0.60
40 42 0.40
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.24
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:80271800 original size:79 final size:79
Alignment explanation
Indices: 80271674--80271828 Score: 213
Period size: 79 Copynumber: 2.0 Consensus size: 79
80271664 TGTGTATGAA
*** *
80271674 TGTGCGAACTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
1 TGTGCGAACTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
80271739 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
** * *
80271752 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCGGGCTA
1 TGTGCGAACTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTA
*
80271817 TGTCCCGAAGGC
65 AGTCCCGAAGGC
80271829 GTTTGAACGA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 24 0.36
79 33 0.50
80 9 0.14
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAACTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:80271855 original size:79 final size:78
Alignment explanation
Indices: 80271684--80271866 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 78
80271674 TGTGCGAACT
* *** *
80271684 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
** *
80271749 AATTGTGCGAGTT
66 AATTGAACGAGTA
* *
80271762 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAG-CCCGAAG
**
80271827 GCGTTTGAACGAGTA
64 GCAATTGAACGAGTA
*
80271842 GCT-ATATCC-GGTTAAACTCCGAAGG
1 G-TGATATCCGGGTTAAGC-CCGAAGG
80271867 TATGTGATTT
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
78 17 0.19
79 46 0.52
80 24 0.27
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
AATTGAACGAGTA
Found at i:80273982 original size:24 final size:24
Alignment explanation
Indices: 80273955--80274028 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 24
80273945 AAGGCTGTCA
80273955 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
80273979 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
80274003 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
80274028 G
1 G
80274029 AGCAAGAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 42 0.93
25 3 0.07
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:80275453 original size:27 final size:26
Alignment explanation
Indices: 80275413--80275547 Score: 144
Period size: 27 Copynumber: 5.0 Consensus size: 26
80275403 AGGAAGTGTC
* *
80275413 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
80275440 CTGGTGGCTTTGCCACATACATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
80275467 CTGGTGGCTCTGCCACATACATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
80275494 CTGGTGGCTCTACCACAAAATATCTGTT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
* *
80275522 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
80275548 ATGGCAGTCA
Statistics
Matches: 94, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
26 11 0.12
27 62 0.66
28 20 0.21
29 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:80275497 original size:54 final size:55
Alignment explanation
Indices: 80275413--80275547 Score: 159
Period size: 54 Copynumber: 2.5 Consensus size: 55
80275403 AGGAAGTGTC
* * * * *
80275413 CTGGTGGCTATGCCACA-ATTATCTGATCTGGTGGCTTTGCCAC-ATACATCTGTT
1 CTGGTGGCTCTGCCACATA-TATCTGTTCTGGTGGCTCTACCACAAAACATCTGTT
* *
80275467 CTGGTGGCTCTGCCACATACATCTGTTCTGGTGGCTCTACCACAAAATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTACCACAAAACATCTGTT
* *
80275522 CTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
80275548 ATGGCAGTCA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
54 43 0.62
55 26 0.38
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (55 bp):
CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTACCACAAAACATCTGTT
Found at i:80280245 original size:20 final size:20
Alignment explanation
Indices: 80280208--80280385 Score: 180
Period size: 20 Copynumber: 8.9 Consensus size: 20
80280198 ATTGCTGCGA
* *
80280208 TATTTATGGCTTTCTGCCAC
1 TATTGATGGCTTTGTGCCAC
* * * *
80280228 TACTCATGGATTTGTGCCAT
1 TATTGATGGCTTTGTGCCAC
*
80280248 TATTGATGGC-TTATGCCAC
1 TATTGATGGCTTTGTGCCAC
* *
80280267 TATTCAAGGCTTTGTGCCAC
1 TATTGATGGCTTTGTGCCAC
*
80280287 TATTGATGGC-TTGTGCTAC
1 TATTGATGGCTTTGTGCCAC
80280306 TATTGATGGCTTTGTGCCAC
1 TATTGATGGCTTTGTGCCAC
* *
80280326 TATTGGTGGCTTTGTGCCGC
1 TATTGATGGCTTTGTGCCAC
* * *
80280346 TACTGAATGGCTTTGAGCGAC
1 TATTG-ATGGCTTTGTGCCAC
* *
80280367 TACTCATGGCTTTGTGCCA
1 TATTGATGGCTTTGTGCCA
80280386 TATACTGATA
Statistics
Matches: 128, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
19 33 0.26
20 80 0.62
21 15 0.12
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (20 bp):
TATTGATGGCTTTGTGCCAC
Found at i:80280268 original size:39 final size:39
Alignment explanation
Indices: 80280208--80280337 Score: 161
Period size: 39 Copynumber: 3.3 Consensus size: 39
80280198 ATTGCTGCGA
* * * * *
80280208 TATTTATGGCTTTCTGCCACTACTCATGGATTTGTGCCAT
1 TATTGATGGC-TTATGCCACTATTCATGGCTTTGTGCCAC
*
80280248 TATTGATGGCTTATGCCACTATTCAAGGCTTTGTGCCAC
1 TATTGATGGCTTATGCCACTATTCATGGCTTTGTGCCAC
* * *
80280287 TATTGATGGCTTGTGCTACTATTGATGGCTTTGTGCCAC
1 TATTGATGGCTTATGCCACTATTCATGGCTTTGTGCCAC
*
80280326 TATTGGTGGCTT
1 TATTGATGGCTT
80280338 TGTGCCGCTA
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 70 0.89
40 9 0.11
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (39 bp):
TATTGATGGCTTATGCCACTATTCATGGCTTTGTGCCAC
Found at i:80280324 original size:59 final size:59
Alignment explanation
Indices: 80280215--80280385 Score: 173
Period size: 59 Copynumber: 2.9 Consensus size: 59
80280205 CGATATTTAT
* * * * *
80280215 GGCTTTCTGCCACTACTCATGGATTTGTGCCATTATTGATGGC-TTATGCCACTATTCAA
1 GGCTTTGTGCCACTACTGATGG-CTTGTGCCACTATTGATGGCTTTGTGCCACTATTCAA
* * ***
80280274 GGCTTTGTGCCACTATTGATGGCTTGTGCTACTATTGATGGCTTTGTGCCACTATTGGT
1 GGCTTTGTGCCACTACTGATGGCTTGTGCCACTATTGATGGCTTTGTGCCACTATTCAA
* * * * *
80280333 GGCTTTGTGCCGCTACTGAATGGCTTTGAGCGACTACTCATGGCTTTGTGCCA
1 GGCTTTGTGCCACTACTG-ATGGC-TTGTGCCACTATTGATGGCTTTGTGCCA
80280386 TATACTGATA
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
58 17 0.18
59 47 0.51
60 5 0.05
61 24 0.26
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.37
Consensus pattern (59 bp):
GGCTTTGTGCCACTACTGATGGCTTGTGCCACTATTGATGGCTTTGTGCCACTATTCAA
Found at i:80282284 original size:2 final size:2
Alignment explanation
Indices: 80282277--80282311 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
80282267 GAATCAACAC
80282277 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80282312 ACAGGTTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80285836 original size:24 final size:24
Alignment explanation
Indices: 80285808--80285854 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
80285798 TACCGATTCT
*
80285808 CAGCTCGT-ATGAGCTTACCAATTG
1 CAGCTCGTGA-GACCTTACCAATTG
80285832 CAGCTCGTGAGACCTTACCAATT
1 CAGCTCGTGAGACCTTACCAATT
80285855 CTCAACTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (24 bp):
CAGCTCGTGAGACCTTACCAATTG
Found at i:80290389 original size:48 final size:50
Alignment explanation
Indices: 80290173--80290439 Score: 176
Period size: 48 Copynumber: 5.6 Consensus size: 50
80290163 TGCAATACCA
* * *
80290173 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCATC-CATCA-A-GT-T-G
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-ACCACAT-ATACGTGTCG
* * * *
80290220 ATGCCAAT-TCCCAGACATGGTCTTACACT-GACTATCA-AAAT-CGAGGCCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACTAG-CTACCACATATACG-TGTCG
* ** * *
80290269 ACGCCATGTCCCAGACATGGTCTTACACTAGCTTTCACATATATGTGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTACCACATATACGTGTCG
*
80290319 ATGCCATGTCCCAGACATGGTCTTACA-TAGAC-ACCTC-TATACGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTACCACATATACGTGTCG
* * * *
80290367 ATGCCATGTCCTAGACATGGTCTTAAACT-G--A-CACATCT-CGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTACCACATATACGT-GTCG
*
80290413 ATG-AATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
80290440 GGCTTACATC
Statistics
Matches: 179, Mismatches: 25, Indels: 35
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.05
45 18 0.10
46 15 0.08
47 27 0.15
48 39 0.22
49 37 0.21
50 33 0.18
51 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTACCACATATACGTGTCG
Found at i:80290467 original size:46 final size:46
Alignment explanation
Indices: 80290412--80290534 Score: 124
Period size: 46 Copynumber: 2.7 Consensus size: 46
80290402 TCTCGTAGCC
* * ** *
80290412 GATGAATGTCCCAGACATGTCTTACACTGGCT-TACATCTTGAGGTT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAATGAGGCT
* * *
80290458 GATGCATGTCCCAGAAATTTCATT-CACTAGCTCTCATAATGTGGCT
1 GATGCATGTCCCAGACATGTC-TTACACTAGCTCTCATAATGAGGCT
* *
80290504 GATGCATGTCCCAAACTTGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
80290535 ACACAAATAA
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
45 2 0.03
46 57 0.92
47 3 0.05
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCT
Found at i:80292057 original size:21 final size:20
Alignment explanation
Indices: 80292033--80292078 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
80292023 TGTAACTTGG
* * *
80292033 TCACACAGTCGTGTGCCTCTT
1 TCACACAGCCATGTGACTC-T
80292054 TCACACAGCCATGTGACTCT
1 TCACACAGCCATGTGACTCT
80292074 TCACA
1 TCACA
80292079 TGGCCTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.28
Consensus pattern (20 bp):
TCACACAGCCATGTGACTCT
Found at i:80295498 original size:21 final size:20
Alignment explanation
Indices: 80295457--80295501 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
80295447 AATCATGCTA
**
80295457 ATTTGGTATATGTTTGATTG
1 ATTTGGTATATGAATGATTG
*
80295477 ATTTGAGTATATGAATGCTTG
1 ATTTG-GTATATGAATGATTG
80295498 ATTT
1 ATTT
80295502 TGAAATGGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.51
Consensus pattern (20 bp):
ATTTGGTATATGAATGATTG
Found at i:80297964 original size:45 final size:44
Alignment explanation
Indices: 80297889--80298006 Score: 110
Period size: 44 Copynumber: 2.7 Consensus size: 44
80297879 ATCTGAATTT
* * * ** * * *
80297889 GTTGAGTTAGTCCAAGTTCGTGATATATATGAGGCATCTGAGCTC
1 GTTGAGTTGGTCCAAGTTCATAATGGATATGA-ACATCCGAACTC
*
80297934 GTTGAGTTGGTCCAAGTTCATTATGGATATGAACATCCGAACTC
1 GTTGAGTTGGTCCAAGTTCATAATGGATATGAACATCCGAACTC
* * * *
80297978 GTTAAATTGGTTCGAGTTCATAATGGATA
1 GTTGAGTTGGTCCAAGTTCATAATGGATA
80298007 CGATACATGT
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
44 33 0.55
45 27 0.45
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (44 bp):
GTTGAGTTGGTCCAAGTTCATAATGGATATGAACATCCGAACTC
Found at i:80302695 original size:48 final size:48
Alignment explanation
Indices: 80302623--80302944 Score: 321
Period size: 48 Copynumber: 6.7 Consensus size: 48
80302613 TAGGGTAAAT
* *
80302623 TGTCGATGCCATGTCCCAGACATGGT-TATACACTGGCTCACATGTCGA
1 TGTCGATGCCATGTCCCAGACATGGTCT-TACACTGGCTCTCATATCGA
* ** ** * *
80302671 GGTCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTTGTCTCAA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA
* *
80302719 TGCCGATGCCTTGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G-
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGA
* * * * * * *
80302766 TAGCCAACGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCGA
1 T-GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA
* *
80302815 TGTCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAC-A
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA
* * *
80302862 TTGTCGATGCCATTTTCCACACATGGTCTTACACTGGCTCTCATATCG-
1 -TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA
* * * *
80302910 TGGCCAACGCCATGTCCCACACATGGTCTTACACT
1 T-GTCGATGCCATGTCCCAGACATGGTCTTACACT
80302945 AGCACACATA
Statistics
Matches: 223, Mismatches: 43, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
47 5 0.02
48 215 0.96
49 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA
Found at i:80302890 original size:144 final size:144
Alignment explanation
Indices: 80302630--80302956 Score: 444
Period size: 144 Copynumber: 2.3 Consensus size: 144
80302620 AATTGTCGAT
* * * *
80302630 GCCATGTCCCAGACATGGT-TATACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGACAT
1 GCCATGTCCCAAACATGGTCT-TACACTAGCACACATATCGAGGTCGATGCCATGTCCCAGACAT
** ** *
80302694 GGTCTTACACTAACTCTTGTCTCAATGCCGATGCCTTGTCCCAGACATGGTCTTACACTGGCTCT
65 GGTCTTACACTAACTCTCATAACAATGCCGATGCCTTGTCCCACACATGGTCTTACACTGGCTCT
80302759 CATAAT-GTAGCCAAC
130 CAT-ATCGTAGCCAAC
*
80302774 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCGATGTCGATGCCATGTCCCAGACATG
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCGAGGTCGATGCCATGTCCCAGACATG
* ** * * *
80302839 GTCTTACATTGGCTCTCATAACATTGTCGATGCCATT-TTCCACACATGGTCTTACACTGGCTCT
66 GTCTTACACTAACTCTCATAACAATGCCGATGCC-TTGTCCCACACATGGTCTTACACTGGCTCT
*
80302903 CATATCGTGGCCAAC
130 CATATCGTAGCCAAC
*
80302918 GCCATGTCCCACACATGGTCTTACACTAGCACACATATC
1 GCCATGTCCCAAACATGGTCTTACACTAGCACACATATC
80302957 ACCCAATGTC
Statistics
Matches: 162, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
143 2 0.01
144 157 0.97
145 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (144 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCACACATATCGAGGTCGATGCCATGTCCCAGACATG
GTCTTACACTAACTCTCATAACAATGCCGATGCCTTGTCCCACACATGGTCTTACACTGGCTCTC
ATATCGTAGCCAAC
Found at i:80303730 original size:31 final size:31
Alignment explanation
Indices: 80303676--80303754 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
80303666 TCAGTACAAT
* *
80303676 CTGGGCCAAAGCCCTATTCATAAATCATATCA
1 CTGGGCCGAAG-CCTTTTCATAAATCATATCA
80303708 CTGGGCCGAAGCCTTTTCATAAATCATATCA
1 CTGGGCCGAAGCCTTTTCATAAATCATATCA
80303739 CTGGGCCGAAGCCTTT
1 CTGGGCCGAAGCCTTT
80303755 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
31 35 0.78
32 10 0.22
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (31 bp):
CTGGGCCGAAGCCTTTTCATAAATCATATCA
Found at i:80304043 original size:26 final size:26
Alignment explanation
Indices: 80303960--80304147 Score: 240
Period size: 26 Copynumber: 7.3 Consensus size: 26
80303950 CTGGAGGCCT
*
80303960 AGCCTCTTTT-AAT-AATTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
80303984 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
80304009 AGCCCTTTTCAATAAACCGAGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
80304035 AGCTCTTTTCGATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
80304061 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* **
80304087 AGCCCATTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
80304113 AGCCCATTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
80304139 AGCCCTTTT
1 AGCCCTTTT
80304148 GCACTTCCTC
Statistics
Matches: 142, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
23 5 0.04
24 5 0.04
25 30 0.21
26 102 0.72
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:80304085 original size:52 final size:52
Alignment explanation
Indices: 80303960--80304147 Score: 276
Period size: 52 Copynumber: 3.7 Consensus size: 52
80303950 CTGGAGGCCT
*
80303960 AGCCTCTTTT-AAT-AATTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
* * * *
80304009 AGCCCTTTTCAATAAACCGAGGCATAAGCTCTTTTCGATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
*
80304061 AGCCCTTTTCAATAAACTGGGGCATAAGCCCATTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
*
80304113 AGCCCATTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
80304148 GCACTTCCTC
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
48 5 0.04
49 7 0.06
50 7 0.06
51 23 0.19
52 81 0.66
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
Found at i:80304976 original size:27 final size:27
Alignment explanation
Indices: 80304946--80305037 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
80304936 GGGCACGTTC
* *
80304946 GTCATTTTACCATACAGGGG-TATTACA
1 GTCATTTTACCCTACAGGGGCT-TTACG
*
80304973 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCCTACAGGGGCTTTACG
80305000 GTC-TCTTTACCCTACAGGGGCTTTACG
1 GTCAT-TTTACCCTACAGGGGCTTTACG
*
80305027 GTCTTTTTACC
1 GTCATTTTACC
80305038 TATTCTTGGC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCTTTACG
Found at i:80306767 original size:29 final size:29
Alignment explanation
Indices: 80306725--80306782 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
80306715 TAATGGCAGA
80306725 AAGTTTCAAGCTTCAAAGACCCCTTTCTT
1 AAGTTTCAAGCTTCAAAGACCCCTTTCTT
80306754 AAGTTTCAAGCTTCAAAGACCCCTTTCTT
1 AAGTTTCAAGCTTCAAAGACCCCTTTCTT
80306783 GCTAAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (29 bp):
AAGTTTCAAGCTTCAAAGACCCCTTTCTT
Done.