Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 259 of 438
Found at i:80311585 original size:42 final size:42
Alignment explanation
Indices: 80311538--80311617 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
80311528 ATTGAGATGT
* *
80311538 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
1 GATTACATGTAAGACCATGTCTAGAACATTGGCATCGTATTA
* *
80311580 GATTACGTGTAAGACCATGTCTATAACATTGGCATCGT
1 GATTACATGTAAGACCATGTCTAGAACATTGGCATCGT
80311618 TAATCGATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTAGAACATTGGCATCGTATTA
Found at i:80313616 original size:193 final size:192
Alignment explanation
Indices: 80313287--80313671 Score: 718
Period size: 193 Copynumber: 2.0 Consensus size: 192
80313277 CAAGTTGGCA
80313287 CAAGTAAAGGTGGAAAATGACTTGGTAAATAGCATTATTTTTGGCCACACAGGTAAAGACACGGC
1 CAAGTAAAGGTGGAAAATGACTTGGTAAATAGCATTATTTTTGGCCACACAGGTAAAGACACGGC
80313352 CGTGTGTCTCAGCCATGTGGACTTCACAGCCTCAGGCACGAGCGTGAGCCCAGGGCATGTGAAGT
66 CGTGTGTCTCAGCCATGTGGACTTCACAGCCTCAGGCACGAGCGTGAGCCCAGGGCATGTGAAGT
80313417 CCACACCTATTTTATGAAAATCTTCAAAAATTAAATCGCCCACATGAG-CTAAGTCACACGGCC
131 CCACACCTATTTTATGAAAATCTTCAAAAATTAAATCGCCCACATG-GCCTAAG-CACACGGCC
* *
80313480 CAAGTAAAGGTGGAAAATGACTTGGTAAATAGCTTTATTTTTGGCCACACAGGTAAAGACATGGC
1 CAAGTAAAGGTGGAAAATGACTTGGTAAATAGCATTATTTTTGGCCACACAGGTAAAGACACGGC
*
80313545 CGTGTGTCTCAGCCATGTGGACTTCACAGCCTCAGGCACGGGCGTGAGCCCAGGGCATGTGAAGT
66 CGTGTGTCTCAGCCATGTGGACTTCACAGCCTCAGGCACGAGCGTGAGCCCAGGGCATGTGAAGT
80313610 CCACACCTATTTTATGAAAATCTTCAAAAATTAAATCGCCCACATGGCCTAAGCACACGGCC
131 CCACACCTATTTTATGAAAATCTTCAAAAATTAAATCGCCCACATGGCCTAAGCACACGGCC
80313672 GTGTGACTTA
Statistics
Matches: 188, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
192 10 0.05
193 178 0.95
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (192 bp):
CAAGTAAAGGTGGAAAATGACTTGGTAAATAGCATTATTTTTGGCCACACAGGTAAAGACACGGC
CGTGTGTCTCAGCCATGTGGACTTCACAGCCTCAGGCACGAGCGTGAGCCCAGGGCATGTGAAGT
CCACACCTATTTTATGAAAATCTTCAAAAATTAAATCGCCCACATGGCCTAAGCACACGGCC
Found at i:80317230 original size:29 final size:29
Alignment explanation
Indices: 80317198--80317270 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
80317188 TGTAATGTAC
** *
80317198 GGCACTAAGTGTGCGAGTTTGGA-CTATAT
1 GGCACTAAGTGTGCGAGCATGAATC-ATAT
* *
80317227 GGCACTATGTGTGCGGGCATGAATCATAT
1 GGCACTAAGTGTGCGAGCATGAATCATAT
80317256 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
80317271 TGATTGAGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 36 0.97
30 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCATGAATCATAT
Found at i:80321532 original size:45 final size:45
Alignment explanation
Indices: 80321469--80321566 Score: 146
Period size: 45 Copynumber: 2.2 Consensus size: 45
80321459 TAAATAGGAA
* *
80321469 ATATGTG--ATCTGAACTCATTGCGTTGTGGTCTGAGTTCATGAT
1 ATATGTGACATCTGAACTCATTGAGCTGTGGTCTGAGTTCATGAT
*
80321512 ATATGTGACATCTGAGCTCATTGAGCTGTGGTCTGAGTTCATGAT
1 ATATGTGACATCTGAACTCATTGAGCTGTGGTCTGAGTTCATGAT
*
80321557 GTATGTGACA
1 ATATGTGACA
80321567 CATATTTTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 7 0.14
45 42 0.86
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (45 bp):
ATATGTGACATCTGAACTCATTGAGCTGTGGTCTGAGTTCATGAT
Found at i:80325880 original size:68 final size:68
Alignment explanation
Indices: 80325731--80325888 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
80325721 CTAGCCAATT
* * *
80325731 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
80325796 TTTA
65 CATA
* *
80325800 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGCGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
80325862 CTACATA
63 C-ACATA
*
80325869 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
80325889 ACACATGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:80328413 original size:21 final size:21
Alignment explanation
Indices: 80328374--80328414 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80328364 GGTACAATGG
*
80328374 ATATTGTTTTCTTATGTTAAA
1 ATATTGTTTTATTATGTTAAA
80328395 ATATGTGTTTTATTA-GTTAA
1 ATAT-TGTTTTATTATGTTAA
80328415 TAAAAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.56
Consensus pattern (21 bp):
ATATTGTTTTATTATGTTAAA
Found at i:80335070 original size:46 final size:44
Alignment explanation
Indices: 80334947--80335108 Score: 150
Period size: 46 Copynumber: 3.5 Consensus size: 44
80334937 GCCAATTCCG
* * *
80334947 TGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCA
1 TGTCCCAGACATGGTCTTACACTG-CACTTGTCTTAGCCGATGCA
* *
80334992 TGTCCCAGACAT-GTCTTATATTG-ACTTATGTCTTGAGGCCGATGCA
1 TGTCCCAGACATGGTCTTACACTGCAC-T-TGTCTT-A-GCCGATGCA
* *
80335038 TATCCCAGACAT-GTCTTACACTAGCACTTGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGGTCTTACACT-GCACTTGTCT-TA-GCCGATG-CA
*
80335085 TGTCCTAGACATGGTCTTACACTG
1 TGTCCCAGACATGGTCTTACACTG
80335109 ACTCTCATAA
Statistics
Matches: 96, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
44 13 0.14
45 13 0.14
46 41 0.43
47 15 0.16
48 12 0.12
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (44 bp):
TGTCCCAGACATGGTCTTACACTGCACTTGTCTTAGCCGATGCA
Found at i:80344323 original size:29 final size:29
Alignment explanation
Indices: 80344260--80344361 Score: 104
Period size: 28 Copynumber: 3.6 Consensus size: 29
80344250 TCAACATACC
* *
80344260 TGTATCTGGCCCATTAAGCCC-AATCA-T
1 TGTATATGGCCCATTAGGCCCAAATCACT
**
80344287 ATCCATATGGCCCATTAGGCCCAAATCACT
1 -TGTATATGGCCCATTAGGCCCAAATCACT
*
80344317 TGTATATGG-CCATTAGTCCCAAATCACAT
1 TGTATATGGCCCATTAGGCCCAAATCAC-T
*
80344346 T-TATATGGCCCGTTAG
1 TGTATATGGCCCATTAG
80344362 ACCTAGTCAC
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
28 41 0.66
29 20 0.32
30 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACT
Found at i:80345721 original size:16 final size:16
Alignment explanation
Indices: 80345700--80345730 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
80345690 GAAAGTTCGG
80345700 GATTTCAGGATTTTTA
1 GATTTCAGGATTTTTA
80345716 GATTTCAGGATTTTT
1 GATTTCAGGATTTTT
80345731 GGGGCGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (16 bp):
GATTTCAGGATTTTTA
Found at i:80350184 original size:35 final size:35
Alignment explanation
Indices: 80350145--80350216 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
80350135 CTAAGGCCTA
80350145 TATATATTTCATATATTCAACCATGCCAACAATTT
1 TATATATTTCATATATTCAACCATGCCAACAATTT
80350180 TATATATTTCATATATTCAACCATGCCAACAATTT
1 TATATATTTCATATATTCAACCATGCCAACAATTT
80350215 TA
1 TA
80350217 CATTCATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (35 bp):
TATATATTTCATATATTCAACCATGCCAACAATTT
Found at i:80352850 original size:18 final size:18
Alignment explanation
Indices: 80352801--80352861 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
80352791 CTACCCCTTT
* * *
80352801 TTCCTCACATGCATCTTT
1 TTCCTCACCTACATCTTC
*
80352819 TTCCTC-CTCGACATCTTC
1 TTCCTCAC-CTACATCTTC
*
80352837 TTCCTCACCTACATATTC
1 TTCCTCACCTACATCTTC
80352855 TTCCTCA
1 TTCCTCA
80352862 TCTGCGCCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 1 0.03
18 33 0.94
19 1 0.03
ACGTcount: A:0.16, C:0.39, G:0.03, T:0.41
Consensus pattern (18 bp):
TTCCTCACCTACATCTTC
Found at i:80358710 original size:27 final size:27
Alignment explanation
Indices: 80358680--80358733 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
80358670 TCATACAACC
* *
80358680 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
80358707 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
80358734 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:80359066 original size:31 final size:30
Alignment explanation
Indices: 80359031--80359088 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80359021 AAAATCATAT
*
80359031 TTTGTAAAAAATTACAATTTTCCCCCTAAAC
1 TTTGT-AAAAATTACAATTTTACCCCTAAAC
* *
80359062 TTTGTCAAAATTACATTTTTACCCCTA
1 TTTGTAAAAATTACAATTTTACCCCTA
80359089 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.34, C:0.22, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTGTAAAAATTACAATTTTACCCCTAAAC
Found at i:80362061 original size:28 final size:27
Alignment explanation
Indices: 80362000--80362069 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
80361990 ATAGTGAGTC
*
80362000 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
80362027 CGCACACTTAGTGCTATATGATCCAACT
1 CGCACACTTAGTGCTATATAAT-CAACT
80362055 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80362070 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:80369962 original size:28 final size:27
Alignment explanation
Indices: 80369901--80369970 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
80369891 ATAGTGAGTC
*
80369901 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
80369928 CGCACACTTAGTGCTATATGATCCAACT
1 CGCACACTTAGTGCTATATAAT-CAACT
80369956 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80369971 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:80377758 original size:27 final size:27
Alignment explanation
Indices: 80377740--80377808 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
80377730 ATAGTGAGTC
80377740 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
80377767 CGCACACTTAGTGCTATATGATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
80377794 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
80377809 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:80383010 original size:51 final size:49
Alignment explanation
Indices: 80382953--80383093 Score: 167
Period size: 49 Copynumber: 2.8 Consensus size: 49
80382943 AAGGTTATCT
*
80382953 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCTAAGTGA-TC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TGATTC
* * * * * *
80383003 AGTTACACATAGTAGCCTGCACTTAGTACTAAAGATGCGACCAATTATTC
1 -GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATGATTC
* *
80383053 GGTACACGTAATAGCCTGCACTTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
80383094 TCAGTATAGA
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 36 0.48
50 5 0.07
51 34 0.45
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATGATTC
Found at i:80383369 original size:27 final size:27
Alignment explanation
Indices: 80383339--80383392 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
80383329 TCATACAACC
* *
80383339 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
80383366 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
80383393 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:80388754 original size:51 final size:50
Alignment explanation
Indices: 80388686--80388833 Score: 183
Period size: 51 Copynumber: 3.0 Consensus size: 50
80388676 CACACTTGTA
* * *
80388686 GACAAGGTTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACAT
1 GACAAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACAC
* **
80388736 GATCAAAGTTATCAGGTACGA-ATAATAGCCTGCACTTAGTACTACACATGC
1 GA-CAAAGTTATCAGGTAC-ACATAGTAGCCTGCACTTAGTACTACACACAC
* * *
80388787 GACCAA-TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
1 GACAAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACAC
80388834 GTGACCTCAG
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
48 1 0.01
49 35 0.42
50 5 0.06
51 42 0.50
52 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (50 bp):
GACAAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACAC
Found at i:80389116 original size:27 final size:27
Alignment explanation
Indices: 80389086--80389142 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
80389076 TCATACAACC
* *
80389086 CATGTAATAGTAATTTGAC-ATTCAATT
1 CATGTAACAATAATTT-ACAATTCAATT
*
80389113 CATGTAACAATAATTTTCAATTCAATT
1 CATGTAACAATAATTTACAATTCAATT
80389140 CAT
1 CAT
80389143 CATCGGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (27 bp):
CATGTAACAATAATTTACAATTCAATT
Found at i:80389527 original size:46 final size:47
Alignment explanation
Indices: 80389420--80389641 Score: 213
Period size: 46 Copynumber: 4.7 Consensus size: 47
80389410 CGGCCACATT
*
80389420 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTTGAG
* *
80389468 ATGAGGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTTGAG
* * * *
80389514 ATGTA-AGCCAGTGTAAGA-CATGTCTAGGAC-TTGCATCGGCTACGAG
1 ATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCT-TGAG
* * * *
80389560 ATGATAGTCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTTGAG
* * * * *
80389607 AT-ACGAACCAGTATAAGGCCGTGTCTAGGACATGG
1 ATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGG
80389642 AATAGGCACT
Statistics
Matches: 144, Mismatches: 23, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
45 5 0.03
46 60 0.42
47 54 0.38
48 25 0.17
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTTGAG
Found at i:80389605 original size:93 final size:94
Alignment explanation
Indices: 80389425--80389641 Score: 241
Period size: 93 Copynumber: 2.3 Consensus size: 94
80389415 ACATTATGAG
* * * *
80389425 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGAGATGAAGGCTAATGTAAGACATG
*
80389490 TCTGGGACATGCATCAGCCTTGAGATGTA
66 TCTGGGACATGCATCAGACTTGAGATGTA
* *
80389519 AGCCAGTGTAAGA-CATGTCTAGGAC-TTGCATCGGC-TACGAGATGATAGTC-AATGTAAGACC
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT-CGAGATGA-AGGCTAATGTAAGA-C
80389580 ATGTCTGGGACATGGCATC-GACTTGAGATACG-A
63 ATGTCTGGGACAT-GCATCAGACTTGAGAT--GTA
* * *
80389613 A-CCAGTATAAGGCCGTGTCTAGGACATGG
1 AGCCAGTGTAAGACCATGTCTAGGACATGG
80389642 AATAGGCACT
Statistics
Matches: 104, Mismatches: 11, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
91 1 0.01
92 24 0.23
93 45 0.43
94 31 0.30
95 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGAGATGAAGGCTAATGTAAGACATG
TCTGGGACATGCATCAGACTTGAGATGTA
Found at i:80389639 original size:140 final size:140
Alignment explanation
Indices: 80389387--80389640 Score: 316
Period size: 140 Copynumber: 1.8 Consensus size: 140
80389377 TGAGCTAGTA
* * * *
80389387 TAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAATGTAAGACCATGTCTGGGACA
* ** * * *
80389452 TGGCATCGGCATTGAGATGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATG
66 TGGCATCGACATTGAGATGAGAACCAGTATAAGACATGTCTAGGACATGCATCAGCCTTGAGATG
80389517 TAAGCCAGTG
131 TAAGCCAGTG
* * * *
80389527 TAAGACATGTCTAGGACTTGCATCGGCTACGA-GATGATAGTCAATGTAAGACCATGTCTGGGAC
1 TAAGACATGTCTAGGACATGCATCGGCCAC-ATGATGAGAGCCAATGTAAGACCATGTCTGGGAC
* *
80389591 ATGGCATCGAC-TTGAGAT-ACGAACCAGTATAAGGCCGTGTCTAGGACATG
65 ATGGCATCGACATTGAGATGA-GAACCAGTATAA-GACATGTCTAGGACATG
80389641 GAATAGGCAC
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
138 1 0.01
139 15 0.16
140 78 0.82
141 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (140 bp):
TAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAATGTAAGACCATGTCTGGGACA
TGGCATCGACATTGAGATGAGAACCAGTATAAGACATGTCTAGGACATGCATCAGCCTTGAGATG
TAAGCCAGTG
Found at i:80394654 original size:39 final size:39
Alignment explanation
Indices: 80394598--80394780 Score: 267
Period size: 39 Copynumber: 4.7 Consensus size: 39
80394588 CATGGTATTT
*
80394598 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGTTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
* *
80394637 GGAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
* * *
80394676 GAAATATATCCGGACATGAATTCTGCAGGCTATATACTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
* * * *
80394715 GGAATATATCTGGACATGAGGTCCGCAGGCTATATGCAG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
*
80394754 GAAATATATCCGGACTTGAAGTCCGCA
1 GAAATATATCCGGACATGAAGTCCGCA
80394781 AGCCACGTGC
Statistics
Matches: 125, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (39 bp):
GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
Found at i:80394730 original size:78 final size:78
Alignment explanation
Indices: 80394598--80394780 Score: 303
Period size: 78 Copynumber: 2.3 Consensus size: 78
80394588 CATGGTATTT
**
80394598 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGTTGGGAATATATCCGGACATGAGGTCCGC
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATACTGGGAATATATCCGGACATGAGGTCCGC
*
80394663 AGGCTATATGCTG
66 AGGCTATATGCAG
* * *
80394676 GAAATATATCCGGACATGAATTCTGCAGGCTATATACTGGGAATATATCTGGACATGAGGTCCGC
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATACTGGGAATATATCCGGACATGAGGTCCGC
80394741 AGGCTATATGCAG
66 AGGCTATATGCAG
*
80394754 GAAATATATCCGGACTTGAAGTCCGCA
1 GAAATATATCCGGACATGAAGTCCGCA
80394781 AGCCACGTGC
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 96 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (78 bp):
GAAATATATCCGGACATGAAGTCCGCAGGCTATATACTGGGAATATATCCGGACATGAGGTCCGC
AGGCTATATGCAG
Found at i:80402599 original size:78 final size:78
Alignment explanation
Indices: 80402466--80402648 Score: 312
Period size: 78 Copynumber: 2.3 Consensus size: 78
80402456 CATGGTATTT
* * * *
80402466 GAAATATATCCGGACATGAAGTCCGTAGGCTATATGTTGTGAATATATCCGGACATGAGGTCCGC
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTGGGAATATATCCAGACATGAGGTCCGC
80402531 AGGCTATATGCTG
66 AGGCTATATGCTG
80402544 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTGGGAATATATCCAGACATGAGGTCCGC
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTGGGAATATATCCAGACATGAGGTCCGC
80402609 AGGCTATATGCTG
66 AGGCTATATGCTG
* *
80402622 GAAATATATCTGGACTTGAAGTCCGCA
1 GAAATATATCCGGACATGAAGTCCGCA
80402649 AGCCACGTGC
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 99 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (78 bp):
GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTGGGAATATATCCAGACATGAGGTCCGC
AGGCTATATGCTG
Found at i:80402663 original size:39 final size:39
Alignment explanation
Indices: 80402466--80402648 Score: 278
Period size: 39 Copynumber: 4.7 Consensus size: 39
80402456 CATGGTATTT
* *
80402466 GAAATATATCCGGACATGAAGTCCGTAGGCTATATGTTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
*
80402505 TG-AATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 -GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
80402544 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
* * *
80402583 GGAATATATCCAGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
* *
80402622 GAAATATATCTGGACTTGAAGTCCGCA
1 GAAATATATCCGGACATGAAGTCCGCA
80402649 AGCCACGTGC
Statistics
Matches: 130, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 128 0.98
40 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (39 bp):
GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
Found at i:80407274 original size:39 final size:39
Alignment explanation
Indices: 80407230--80407389 Score: 257
Period size: 39 Copynumber: 4.1 Consensus size: 39
80407220 AATTATGTTA
* *
80407230 CCAGCACAAAGCCTGCGGGACTTTTGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
80407269 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGGTACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
80407308 CCAGCATGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
80407347 CCAGCACGACGCCTGCGGGTCTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
80407386 CCAG
1 CCAG
80407390 TGTCTTGCTT
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.23
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:80413827 original size:39 final size:39
Alignment explanation
Indices: 80413783--80413864 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
80413773 AATTATGTTA
*
80413783 CCAGCACAAAGCCTGCGGGACTTTAGCCCAAATACATTT
1 CCAGCACAAAGCCTACGGGACTTTAGCCCAAATACATTT
* **
80413822 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTACGGGACTTTAGCCCAAATACATTT
80413861 CCAG
1 CCAG
80413865 TGTCTTGCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.20
Consensus pattern (39 bp):
CCAGCACAAAGCCTACGGGACTTTAGCCCAAATACATTT
Found at i:80414963 original size:2 final size:2
Alignment explanation
Indices: 80414956--80414981 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80414946 TAATAAAATC
80414956 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
80414982 CCTTTACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80420304 original size:39 final size:39
Alignment explanation
Indices: 80420260--80420341 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
80420250 AATTATGTTA
*
80420260 CCAGCACAAAGCCTGCGGGACTTTAGCCCAAATACATTT
1 CCAGCACAAAGCCTACGGGACTTTAGCCCAAATACATTT
* **
80420299 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTACGGGACTTTAGCCCAAATACATTT
80420338 CCAG
1 CCAG
80420342 TGTCTTGCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.20
Consensus pattern (39 bp):
CCAGCACAAAGCCTACGGGACTTTAGCCCAAATACATTT
Found at i:80426789 original size:39 final size:39
Alignment explanation
Indices: 80426745--80426826 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
80426735 AATTATGTTA
*
80426745 CCAGCACAAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
80426784 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
80426823 CCAG
1 CCAG
80426827 TGTCTTGCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:80427933 original size:2 final size:2
Alignment explanation
Indices: 80427921--80427955 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
80427911 TAATAAAATC
80427921 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80427956 CCTTTACCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80429021 original size:28 final size:28
Alignment explanation
Indices: 80428990--80429044 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
80428980 TTATAATTTA
80428990 CCCAAGCCTAGCCAAATATTTTTCTTAT
1 CCCAAGCCTAGCCAAATATTTTTCTTAT
80429018 CCCAAGCCTAGCCAAATATTTTTCTTA
1 CCCAAGCCTAGCCAAATATTTTTCTTA
80429045 CCTATAGCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.35
Consensus pattern (28 bp):
CCCAAGCCTAGCCAAATATTTTTCTTAT
Found at i:80431391 original size:38 final size:38
Alignment explanation
Indices: 80431340--80431415 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
80431330 CTCTCAAAGC
80431340 AAACAAAGATTTTCTGCTTAGTGCATCTGTGACCACAT
1 AAACAAAGATTTTCTGCTTAGTGCATCTGTGACCACAT
*
80431378 AAACAAGGATTTTCTGCTTAGTGCATCTGTGACCACAT
1 AAACAAAGATTTTCTGCTTAGTGCATCTGTGACCACAT
80431416 TCACCTTTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (38 bp):
AAACAAAGATTTTCTGCTTAGTGCATCTGTGACCACAT
Found at i:80433735 original size:42 final size:42
Alignment explanation
Indices: 80433631--80433779 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 42
80433621 TGAGATATCA
* *
80433631 TGTAAGACCGTGTCTGGGA-AACAGGCCTCGATTTGAGATTTACG
1 TGTAAGACCATGTCTGGGACAA-A-GCATCGATTT-AGATTTACG
*
80433675 TGTAAGACCATGTTTGGGACATAAGCATCGTATTT-GATTT-CG
1 TGTAAGACCATGTCTGGGACA-AAGCATCG-ATTTAGATTTACG
* * * *
80433717 TGTAAGACCCTGTCTGGGACAAAGGCATCGATACT-GAATTACA
1 TGTAAGACCATGTCTGGGACAAA-GCATCGAT-TTAGATTTACG
*
80433760 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
80433780 GTCAGCATTG
Statistics
Matches: 89, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
41 4 0.04
42 32 0.36
43 24 0.27
44 22 0.25
45 6 0.07
46 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAAAGCATCGATTTAGATTTACG
Found at i:80444618 original size:43 final size:43
Alignment explanation
Indices: 80444565--80444678 Score: 183
Period size: 43 Copynumber: 2.7 Consensus size: 43
80444555 AAATAGCTAT
*
80444565 GGCTAATTAATTGGCACTAAATGTGCGATACAATTATAGCCTC
1 GGCTAATTAATTGGCACTAAGTGTGCGATACAATTATAGCCTC
*
80444608 GGCTAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTC
1 GGCTAATTAATTGGCACTAAGTGTGCGATACAATTATAGCCTC
* * *
80444651 AGCTAAGTAATCGGCACTAAGTGTGCGA
1 GGCTAATTAATTGGCACTAAGTGTGCGA
80444679 GTTCGTTGAA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
GGCTAATTAATTGGCACTAAGTGTGCGATACAATTATAGCCTC
Found at i:80447657 original size:19 final size:19
Alignment explanation
Indices: 80447633--80447695 Score: 74
Period size: 19 Copynumber: 3.2 Consensus size: 19
80447623 TTTTATAATT
80447633 AAATCA-TAAAAATTATAAA
1 AAATCATTAAAAATT-TAAA
*
80447652 AAATCATTAAAACTTTTTAAA
1 AAATCATTAAAA--ATTTAAA
*
80447673 AAATCATTAAAAGTTTAAA
1 AAATCATTAAAAATTTAAA
80447692 AAAT
1 AAAT
80447696 ATAAAAGTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 16 0.41
20 5 0.13
21 16 0.41
22 2 0.05
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (19 bp):
AAATCATTAAAAATTTAAA
Found at i:80447694 original size:21 final size:20
Alignment explanation
Indices: 80447633--80447695 Score: 76
Period size: 21 Copynumber: 3.2 Consensus size: 20
80447623 TTTTATAATT
*
80447633 AAATCA-TAAAAATTATAAA
1 AAATCATTAAAATTTATAAA
*
80447652 AAATCATTAAAACTTTTTAAA
1 AAATCATTAAAA-TTTATAAA
*
80447673 AAATCATTAAAAGTT-TAAA
1 AAATCATTAAAATTTATAAA
80447692 AAAT
1 AAAT
80447696 ATAAAAGTGC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
19 14 0.36
20 7 0.18
21 18 0.46
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (20 bp):
AAATCATTAAAATTTATAAA
Found at i:80447700 original size:17 final size:17
Alignment explanation
Indices: 80447667--80447718 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
80447657 ATTAAAACTT
80447667 TTTAAAAAATCATTAAAAG
1 TTTAAAAAAT-A-TAAAAG
80447686 TTTAAAAAATATAAAAG
1 TTTAAAAAATATAAAAG
**
80447703 TGCAAAAAATATAAAA
1 TTTAAAAAATATAAAA
80447719 AATTATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 20 0.65
18 1 0.03
19 10 0.32
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (17 bp):
TTTAAAAAATATAAAAG
Found at i:80448451 original size:17 final size:18
Alignment explanation
Indices: 80448420--80448454 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80448410 TTAATGTGGT
80448420 ATTTTTCATCTATTTTTA
1 ATTTTTCATCTATTTTTA
*
80448438 ATTTTTTATC-ATTTTTA
1 ATTTTTCATCTATTTTTA
80448455 TGATTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTCATCTATTTTTA
Found at i:80448467 original size:28 final size:29
Alignment explanation
Indices: 80448436--80448513 Score: 68
Period size: 28 Copynumber: 2.6 Consensus size: 29
80448426 CATCTATTTT
* * *
80448436 TAATTTTTTATCATTTTTA-TGATTTTAA
1 TAATATTTTATAAATTTTATTGATTTTAA
*
80448464 TAATATTTTGTAAATTTTATTGATTTTTTAA
1 TAATATTTTATAAATTTTATTGA--TTTTAA
*
80448495 AAATATTGTTAATAAATTT
1 TAATATT-TT-ATAAATTT
80448514 CTATATTTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 15 0.38
29 3 0.08
31 12 0.31
32 2 0.05
33 7 0.18
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (29 bp):
TAATATTTTATAAATTTTATTGATTTTAA
Found at i:80448537 original size:28 final size:28
Alignment explanation
Indices: 80448495--80448566 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
80448485 GATTTTTTAA
* * *
80448495 AAATATTGTTAATAAATTTCTATA-TTTT
1 AAATATTTTTCATAAATTT-TACACTTTT
*
80448523 AAATATTTTTCATAACTTTTACACTTTT
1 AAATATTTTTCATAAATTTTACACTTTT
80448551 -AATA-TTTTCATAAATT
1 AAATATTTTTCATAAATT
80448567 ATATAATGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
26 11 0.29
27 7 0.18
28 20 0.53
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (28 bp):
AAATATTTTTCATAAATTTTACACTTTT
Found at i:80448587 original size:19 final size:20
Alignment explanation
Indices: 80448550--80448594 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
80448540 TTTACACTTT
80448550 TAATATTTTCATAAATTATA
1 TAATATTTTCATAAATTATA
* *
80448570 TAATGTTTT-ATAATTTATA
1 TAATATTTTCATAAATTATA
80448589 TAATAT
1 TAATAT
80448595 ATATTTTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (20 bp):
TAATATTTTCATAAATTATA
Found at i:80448716 original size:17 final size:17
Alignment explanation
Indices: 80448654--80448727 Score: 71
Period size: 17 Copynumber: 4.3 Consensus size: 17
80448644 ATTATATTTT
* *
80448654 TTTTATAATTTTTTTCA
1 TTTTATAATTTTTATGA
80448671 TTTATAATAATTTTATAT-A
1 TTT-T-ATAATTTT-TATGA
**
80448690 TTTT-CCATTTTTATGA
1 TTTTATAATTTTTATGA
80448706 TTTTATAATTTTTATGA
1 TTTTATAATTTTTATGA
80448723 TTTTA
1 TTTTA
80448728 ATCATAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
15 3 0.06
16 10 0.21
17 18 0.38
18 2 0.04
19 12 0.26
20 2 0.04
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTTATAATTTTTATGA
Found at i:80448718 original size:25 final size:26
Alignment explanation
Indices: 80448654--80448718 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 26
80448644 ATTATATTTT
*
80448654 TTTTATAATTTTTTTCATTTATAATAA
1 TTTTATAA-TTTTTCCATTTATAATAA
* *
80448681 TTTTAT-ATATTTTCCATTT-TTATGA
1 TTTTATAAT-TTTTCCATTTATAATAA
80448706 TTTTATAATTTTT
1 TTTTATAATTTTT
80448719 ATGATTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 15 0.45
26 12 0.36
27 6 0.18
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTTATAATTTTTCCATTTATAATAA
Found at i:80448726 original size:25 final size:24
Alignment explanation
Indices: 80448654--80448727 Score: 60
Period size: 25 Copynumber: 2.9 Consensus size: 24
80448644 ATTATATTTT
*
80448654 TTTTATAATTTTTTTCATTTATAATAA
1 TTTTATAATTTTTAT-ATTT-T-ATAA
* *
80448681 TTTTATATATTTTCCAT-TTTTATGA
1 TTTTATA-ATTTT-TATATTTTATAA
80448706 TTTTATAATTTTTATGATTTTA
1 TTTTATAATTTTTAT-ATTTTA
80448728 ATCATAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
23 2 0.05
24 5 0.13
25 15 0.38
26 1 0.03
27 10 0.26
28 5 0.13
29 1 0.03
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (24 bp):
TTTTATAATTTTTATATTTTATAA
Found at i:80448763 original size:30 final size:30
Alignment explanation
Indices: 80448727--80448785 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
80448717 TTATGATTTT
80448727 AATCATAAAATACTAGATTTCGCTATATGA
1 AATCATAAAATACTAGATTTCGCTATATGA
80448757 AATCATAAAATACTAGATTTCGCTATATG
1 AATCATAAAATACTAGATTTCGCTATATG
80448786 GCACAATCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (30 bp):
AATCATAAAATACTAGATTTCGCTATATGA
Found at i:80450614 original size:2 final size:2
Alignment explanation
Indices: 80450607--80450638 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80450597 TTTAAAACTC
80450607 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80450639 CAAGGCTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80453385 original size:3 final size:3
Alignment explanation
Indices: 80453379--80453413 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
80453369 TCTATCTCGA
*
80453379 TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
80453414 AATCTATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:80454873 original size:77 final size:76
Alignment explanation
Indices: 80454661--80454954 Score: 297
Period size: 77 Copynumber: 3.7 Consensus size: 76
80454651 ATTCCGCTTG
* * * * *
80454661 TAAACAAAAAATCAACTAAACAATTCTATTTCAGGATTTTATTCCTGTCGTTTAACAGGATTTGT
1 TAAACAGAAAATC-ATTGAACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTG-
80454726 TTTTTCTTATTTTCGTTT
64 ---TTCTT-TTTT-GTTT
* * * * * *
80454744 CAAACAAAAAATCATTGAACAGTTCTGTTTTAGGATTTTATTCATG-CTGTTTAACAAGACTTGT
1 TAAACAGAAAATCATTGAACAATTCTGTTTCAGGATTTTATTCCTGTC-GTTTAACAAGATTTGT
80454808 TCTTTTTTGTTT
65 TCTTTTTTGTTT
** * *
80454820 TAAATGGAAAATCTATTGAACAATTTTGTTTCAAGATTTTATTCCTGTCGTTTAACAAGATTTGT
1 TAAACAGAAAATC-ATTGAACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTGT
80454885 TCAATTTTTTGTTT
65 TC--TTTTTTGTTT
* *
80454899 TAAACAG-AAATCAATTGAATAATTCTGTTTCAGGATTCTT-TTCCTGTCGTTCAACA
1 TAAACAGAAAATC-ATTGAACAATTCTGTTTCAGGATT-TTATTCCTGTCGTTTAACA
80454955 GAATTTATTC
Statistics
Matches: 179, Mismatches: 26, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
76 13 0.07
77 49 0.27
78 47 0.26
79 17 0.09
81 1 0.01
82 40 0.22
83 12 0.07
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.45
Consensus pattern (76 bp):
TAAACAGAAAATCATTGAACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTGTT
CTTTTTTGTTT
Found at i:80454943 original size:78 final size:77
Alignment explanation
Indices: 80454679--80454971 Score: 290
Period size: 78 Copynumber: 3.7 Consensus size: 77
80454669 AAATCAACTA
* * ***
80454679 AACAATTCTATTTCAGGATTTTATTCCTGTCGTTTAACAGGATTTGTTTTTTCTTATTTTCGTTT
1 AACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTG--TTCAATT-TTTT-GTTT
* *
80454744 CAAACAAAAAATCATTG
62 TAAAC-AGAAATCATTG
* * * *
80454761 AACAGTTCTGTTTTAGGATTTTATTCATG-CTGTTTAACAAGACTTGTTC--TTTTTTGTTTTAA
1 AACAATTCTGTTTCAGGATTTTATTCCTGTC-GTTTAACAAGATTTGTTCAATTTTTTGTTTTAA
**
80454823 ATGGAAAATCTATTG
65 ACAG-AAATC-ATTG
* *
80454838 AACAATTTTGTTTCAAGATTTTATTCCTGTCGTTTAACAAGATTTGTTCAATTTTTTGTTTTAAA
1 AACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTGTTCAATTTTTTGTTTTAAA
80454903 CAGAAATCAATTG
66 CAGAAATC-ATTG
* * *
80454916 AATAATTCTGTTTCAGGATTCTT-TTCCTGTCGTTCAAC-AGAATTTATTCAATTTTT
1 AACAATTCTGTTTCAGGATT-TTATTCCTGTCGTTTAACAAG-ATTTGTTCAATTTTT
80454972 GTTGTCAACA
Statistics
Matches: 178, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
76 12 0.07
77 51 0.29
78 57 0.32
79 17 0.10
80 2 0.01
81 1 0.01
82 38 0.21
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (77 bp):
AACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTGTTCAATTTTTTGTTTTAAA
CAGAAATCATTG
Found at i:80456172 original size:46 final size:49
Alignment explanation
Indices: 80456042--80456175 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 49
80456032 AAGGGTAGGC
80456042 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTA
* * *
80456093 GTT-ACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTA
80456136 -TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTT
80456176 TGGATGCTCA
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 2 0.03
46 25 0.34
47 29 0.40
48 2 0.03
49 1 0.01
50 3 0.04
51 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (49 bp):
GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTA
Found at i:80456198 original size:46 final size:44
Alignment explanation
Indices: 80456055--80456198 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
80456045 CGCATCCATA
80456055 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
80456102 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
80456148 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
80456194 AGTGA
1 AGTGA
80456199 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 32 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:80461319 original size:40 final size:40
Alignment explanation
Indices: 80461264--80461473 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80461254 AACATTGGAA
80461264 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80461304 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80461344 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80461384 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80461423 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80461464 CTATATCCGG
1 ATATATCCGG
80461474 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80469453 original size:40 final size:40
Alignment explanation
Indices: 80469398--80469607 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80469388 AACATTGGAA
80469398 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80469438 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80469478 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80469518 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80469557 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80469598 CTATATCCGG
1 ATATATCCGG
80469608 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80472023 original size:70 final size:70
Alignment explanation
Indices: 80471910--80472067 Score: 160
Period size: 70 Copynumber: 2.3 Consensus size: 70
80471900 ACTCTCTGTC
* * *
80471910 TGGCGTGTT-TCGGTTAGATTAGCTCTTATGAGCATTAGCGTGTTATGATA-AGATTAGCTCTTA
1 TGGCGTGTTAT-GGTTGGATTAGCTCTTATAAGCACTAGCGTGTTATGATAGA-ATTAGCTCTTA
*
80471973 TGAGAAT
64 GGAGAAT
* * * * *
80471980 TGGCGTGTTATGGTTGGATTAGTTCTTATAAGCACT-GTTGTGTTTTGGTTGAATTAGCTCTTAG
1 TGGCGTGTTATGGTTGGATTAGCTCTTATAAGCACTAG-CGTGTTATGATAGAATTAGCTCTTAG
*
80472044 GAGCAT
65 GAGAAT
* *
80472050 TAGCATGTTATGGTTGGA
1 TGGCGTGTTATGGTTGGA
80472068 CTAACGATGT
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
69 1 0.01
70 70 0.96
71 2 0.03
ACGTcount: A:0.22, C:0.10, G:0.28, T:0.41
Consensus pattern (70 bp):
TGGCGTGTTATGGTTGGATTAGCTCTTATAAGCACTAGCGTGTTATGATAGAATTAGCTCTTAGG
AGAAT
Found at i:80472064 original size:35 final size:35
Alignment explanation
Indices: 80471927--80472065 Score: 138
Period size: 35 Copynumber: 4.0 Consensus size: 35
80471917 TTTCGGTTAG
* *
80471927 ATTAGCTCTTATGAGCATTAGCGTGTTAT-GATAA
1 ATTAGCTCTTATGAGCATTAGCGTGTTATGGTTGA
* * *
80471961 GATTAGCTCTTATGAGAATTGGCGTGTTATGGTTGG
1 -ATTAGCTCTTATGAGCATTAGCGTGTTATGGTTGA
* * * * *
80471997 ATTAGTTCTTATAAGCACT-GTTGTGTTTTGGTTGA
1 ATTAGCTCTTATGAGCATTAG-CGTGTTATGGTTGA
* *
80472032 ATTAGCTCTTAGGAGCATTAGCATGTTATGGTTG
1 ATTAGCTCTTATGAGCATTAGCGTGTTATGGTTG
80472066 GACTAACGAT
Statistics
Matches: 82, Mismatches: 19, Indels: 6
0.77 0.18 0.06
Matches are distributed among these distances:
34 1 0.01
35 78 0.95
36 3 0.04
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.41
Consensus pattern (35 bp):
ATTAGCTCTTATGAGCATTAGCGTGTTATGGTTGA
Found at i:80477543 original size:29 final size:29
Alignment explanation
Indices: 80477503--80477605 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
80477493 GTTGAGAGAT
*
80477503 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
80477532 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
80477561 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
80477590 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80477606 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:80482331 original size:17 final size:17
Alignment explanation
Indices: 80482294--80482331 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
80482284 AGTAACGTAA
*
80482294 TTTAATTTATCTCATAC
1 TTTAATTTATCTCAAAC
*
80482311 TTTAATTTATCTCAAAT
1 TTTAATTTATCTCAAAC
80482328 TTTA
1 TTTA
80482332 TCGCAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAATTTATCTCAAAC
Found at i:80485563 original size:20 final size:20
Alignment explanation
Indices: 80485538--80485576 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
80485528 AGGGACTAAA
*
80485538 ATGAAAAGTTTTAAAATTTG
1 ATGAAAAATTTTAAAATTTG
80485558 ATGAAAAATTTTAAAATTT
1 ATGAAAAATTTTAAAATTT
80485577 TATTAATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (20 bp):
ATGAAAAATTTTAAAATTTG
Found at i:80487101 original size:28 final size:29
Alignment explanation
Indices: 80487034--80487134 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
80487024 ATAGTGAATC
*
80487034 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
80487063 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
80487091 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
80487121 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80487135 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:80495181 original size:28 final size:29
Alignment explanation
Indices: 80495114--80495214 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
80495104 ATAGTGAATC
*
80495114 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
80495143 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
80495171 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
80495201 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80495215 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:80502028 original size:22 final size:22
Alignment explanation
Indices: 80502000--80502045 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
80501990 TTGCATGTTT
80502000 TAGGCTCAGAGACTAAATTGAA
1 TAGGCTCAGAGACTAAATTGAA
80502022 TAGGCTCAGAGACTAAATTGAA
1 TAGGCTCAGAGACTAAATTGAA
80502044 TA
1 TA
80502046 AAAGTAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.24
Consensus pattern (22 bp):
TAGGCTCAGAGACTAAATTGAA
Found at i:80514867 original size:27 final size:26
Alignment explanation
Indices: 80514819--80514878 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
80514809 GCAAAGCTAC
* *
80514819 CAGATATTGTGACGAAGTCACCAGTTA
1 CAGATATTGTGACGAAGCCACCAG-AA
* * *
80514846 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
80514872 CAGATAT
1 CAGATAT
80514879 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80514926 original size:71 final size:67
Alignment explanation
Indices: 80514847--80514983 Score: 175
Period size: 67 Copynumber: 2.0 Consensus size: 67
80514837 CACCAGTTAC
* * *
80514847 AGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGAG
1 AGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGAG
80514912 GCTGCT
62 GCTGCT
* * * *
80514918 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGTAGTGAGGCTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
80514983 C
66 C
80514984 CAGAATGCTT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
67 35 0.59
71 24 0.41
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
CT
Found at i:80514965 original size:27 final size:26
Alignment explanation
Indices: 80514918--80514968 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
80514908 CGAGGCTGCT
*
80514918 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
80514944 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
80514969 TTGTAGTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:80519324 original size:30 final size:33
Alignment explanation
Indices: 80519288--80519364 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
80519278 ATCAGATTAC
80519288 TGGCTCACACA-CCC-ATGTGGCC-TGCCCGTG
1 TGGCTCACACAGCCCAATGTGGCCTTGCCCGTG
*
80519318 TGGCTCACACAGCCCAATTTGGCCTTGCCCGTG
1 TGGCTCACACAGCCCAATGTGGCCTTGCCCGTG
* *
80519351 TGGATCTCACAGCC
1 TGGCTCACACAGCC
80519365 TGGCCCATGT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
30 11 0.27
31 3 0.07
32 7 0.17
33 20 0.49
ACGTcount: A:0.16, C:0.38, G:0.25, T:0.22
Consensus pattern (33 bp):
TGGCTCACACAGCCCAATGTGGCCTTGCCCGTG
Found at i:80519370 original size:23 final size:23
Alignment explanation
Indices: 80519339--80519392 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
80519329 GCCCAATTTG
* * *
80519339 GCCTTGCCCGTGTGGATCTCACA
1 GCCTGGCCCATGTGGATCCCACA
*
80519362 GCCTGGCCCATGTGGATCCCACG
1 GCCTGGCCCATGTGGATCCCACA
80519385 GCCTGGCC
1 GCCTGGCC
80519393 TAGATTCCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.11, C:0.39, G:0.30, T:0.20
Consensus pattern (23 bp):
GCCTGGCCCATGTGGATCCCACA
Found at i:80527989 original size:13 final size:13
Alignment explanation
Indices: 80527962--80527994 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
80527952 TGCCAGAAGC
80527962 AATTAAAAAGAAA
1 AATTAAAAAGAAA
80527975 AATTAGAAAAGAAA
1 AATTA-AAAAGAAA
80527989 AATTAA
1 AATTAA
80527995 GCTAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (13 bp):
AATTAAAAAGAAA
Found at i:80530181 original size:23 final size:23
Alignment explanation
Indices: 80530149--80530208 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
80530139 CATGCCCACC
*
80530149 AACCCTACACACCAACTCCGTCT
1 AACCCAACACACCAACTCCGTCT
*
80530172 AACCCAACACACCAACTCTGTCT
1 AACCCAACACACCAACTCCGTCT
*
80530195 AACCTAACACACCA
1 AACCCAACACACCA
80530209 TGTGGGGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.37, C:0.45, G:0.03, T:0.15
Consensus pattern (23 bp):
AACCCAACACACCAACTCCGTCT
Found at i:80530257 original size:40 final size:40
Alignment explanation
Indices: 80530211--80530286 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
80530201 ACACACCATG
* *
80530211 TGGGGATAAAATCGACCCA-CCCATCCCTGCACACCAAATT
1 TGGGGATAAAATCGACCCATCCAAT-CCTACACACCAAATT
*
80530251 TGGGGATAAAATTGACCCATCCAATCCTACACACCA
1 TGGGGATAAAATCGACCCATCCAATCCTACACACCA
80530287 TAAAGTACTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 28 0.88
41 4 0.12
ACGTcount: A:0.34, C:0.33, G:0.14, T:0.18
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCATCCAATCCTACACACCAAATT
Found at i:80532477 original size:17 final size:17
Alignment explanation
Indices: 80532457--80532489 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80532447 TAGAATTGAG
80532457 TTGAGAAAATAATTTAA
1 TTGAGAAAATAATTTAA
*
80532474 TTGAGAAATTAATTTA
1 TTGAGAAAATAATTTA
80532490 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
TTGAGAAAATAATTTAA
Found at i:80532496 original size:9 final size:9
Alignment explanation
Indices: 80532480--80532514 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
80532470 TTAATTGAGA
80532480 AATTAATTT
1 AATTAATTT
*
80532489 AGTTAATTT
1 AATTAATTT
*
80532498 AATTAATTA
1 AATTAATTT
80532507 AATTAATT
1 AATTAATT
80532515 GAGTAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (9 bp):
AATTAATTT
Found at i:80532521 original size:13 final size:13
Alignment explanation
Indices: 80532470--80532522 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
80532460 AGAAAATAAT
80532470 TTAATTGAG-AAA
1 TTAATTGAGTAAA
* *
80532482 TTAATTTAGTTAAT
1 TTAATTGAG-TAAA
* *
80532496 TTAATTAATTAAA
1 TTAATTGAGTAAA
80532509 TTAATTGAGTAAA
1 TTAATTGAGTAAA
80532522 T
1 T
80532523 AAATAATATT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
12 8 0.25
13 15 0.47
14 9 0.28
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (13 bp):
TTAATTGAGTAAA
Found at i:80535833 original size:27 final size:27
Alignment explanation
Indices: 80535782--80535857 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
80535772 AGCTCAGTTT
* * **
80535782 GTAAAATTACCAAAATACCTTTGTAGA
1 GTAAAATGACCATAATACCCCTGTAGA
* * *
80535809 GTAAAATGACCGTAATGCCCCTGTATA
1 GTAAAATGACCATAATACCCCTGTAGA
80535836 GTAAAATGACCATAATACCCCT
1 GTAAAATGACCATAATACCCCT
80535858 ATATGTTAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCATAATACCCCTGTAGA
Found at i:80536325 original size:17 final size:18
Alignment explanation
Indices: 80536303--80536336 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80536293 CACATTGAAG
80536303 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
80536320 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
80536337 CTTCTTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:80537633 original size:28 final size:28
Alignment explanation
Indices: 80537590--80537692 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
80537580 TGGCCCCTTT
80537590 AGGCCCAATCTA-ATTCATATGGCCCATC
1 AGGCCCAATC-ACATTCATATGGCCCATC
*
80537618 AGGCCCAACCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
80537646 AGACCCAATCACTTTCATTTGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
80537674 AGGCCCAATCATATTCATA
1 AGGCCCAATCACATTCATA
80537693 GTCATGCAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 1 0.02
28 63 0.98
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:80537946 original size:15 final size:16
Alignment explanation
Indices: 80537906--80537958 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
80537896 GTAGCCAAAC
80537906 TTTTGGCTTTTCGGTA
1 TTTTGGCTTTTCGGTA
80537922 TTTTGGCTTTTCGG-A
1 TTTTGGCTTTTCGGTA
*
80537937 -TTTGGACTTTTCAGTA
1 TTTTGG-CTTTTCGGTA
80537953 TTTTGG
1 TTTTGG
80537959 GATTTACAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
14 5 0.15
15 8 0.24
16 15 0.45
17 5 0.15
ACGTcount: A:0.09, C:0.11, G:0.25, T:0.55
Consensus pattern (16 bp):
TTTTGGCTTTTCGGTA
Found at i:80545830 original size:21 final size:21
Alignment explanation
Indices: 80545804--80545845 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
80545794 ATTAAAATCA
80545804 CTTACTAGAAGAGAAACTAAG
1 CTTACTAGAAGAGAAACTAAG
*
80545825 CTTACTAGAAGAGAAAGTAAG
1 CTTACTAGAAGAGAAACTAAG
80545846 TGGCTGGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.19
Consensus pattern (21 bp):
CTTACTAGAAGAGAAACTAAG
Found at i:80546605 original size:28 final size:28
Alignment explanation
Indices: 80546570--80546672 Score: 145
Period size: 28 Copynumber: 3.7 Consensus size: 28
80546560 TGGACCCTTT
*
80546570 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
80546598 -GAGCCCAATCTCATTCATATGGCCCATC
1 AG-GCCCAATCACATTCATATGGCCCATC
* * *
80546626 AGGCCTAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
80546654 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
80546673 GTCATGCAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
27 1 0.01
28 65 0.97
29 1 0.01
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:80550051 original size:27 final size:27
Alignment explanation
Indices: 80550010--80550083 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 27
80550000 CCTTGTAGTG
*
80550010 TAAAATGA-CAGTAATGCCCCTATAGGT
1 TAAAATGACCA-TAATGCCCCTATAGGA
* * *
80550037 TAAAATGACCATAATACCACCTGTATGA
1 TAAAATGACCATAATGCC-CCTATAGGA
* *
80550065 TAAAATGACGATTATGCCC
1 TAAAATGACCATAATGCCC
80550084 ATATGTTTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
27 15 0.39
28 23 0.61
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (27 bp):
TAAAATGACCATAATGCCCCTATAGGA
Found at i:80550339 original size:22 final size:22
Alignment explanation
Indices: 80550314--80550371 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
80550304 AATTACGGCC
* *
80550314 TTTAGTTGTCCTGTCTACGGTG
1 TTTAGCTGTCCTGTATACGGTG
*
80550336 TTTAGCGGTCCTGTATACGGTG
1 TTTAGCTGTCCTGTATACGGTG
*
80550358 TTGAGCTGTCCTGT
1 TTTAGCTGTCCTGT
80550372 TGACTTAGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.41
Consensus pattern (22 bp):
TTTAGCTGTCCTGTATACGGTG
Found at i:80550546 original size:27 final size:27
Alignment explanation
Indices: 80550512--80550564 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
80550502 GCATCTGATA
*
80550512 CTGATTCTG-TACTGGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGGC-TAGGCCCAC
80550539 CTGATTCTGTTAATGGGCTAGGCCCA
1 CTGATTCTGTTAATGGGCTAGGCCCA
80550565 ATTGCTACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.17, C:0.26, G:0.26, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTTAATGGGCTAGGCCCAC
Found at i:80558250 original size:46 final size:46
Alignment explanation
Indices: 80558197--80558372 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80558187 TATTTGGGCA
80558197 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80558243 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80558290 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80558336 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80558373 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80558352 original size:93 final size:93
Alignment explanation
Indices: 80558193--80558364 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80558183 GGGATATTTG
* *
80558193 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80558258 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80558286 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80558351 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80558365 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80560267 original size:29 final size:28
Alignment explanation
Indices: 80560233--80560335 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
80560223 TACTCAATCA
*
80560233 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
80560262 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
80560291 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
80560320 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
80560336 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:80562663 original size:40 final size:40
Alignment explanation
Indices: 80562618--80562785 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
80562608 CGGAATATAA
*
80562618 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
80562658 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
80562698 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
80562738 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
80562778 CCGGATAT
1 CCGGATAT
80562786 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80562768 original size:80 final size:80
Alignment explanation
Indices: 80562634--80562785 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
80562624 ATAAGCATGT
* *
80562634 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
80562699 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
80562714 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
80562777 CCCGGATAT
64 CCCGGATAT
80562786 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:80569163 original size:28 final size:28
Alignment explanation
Indices: 80569131--80569199 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
80569121 GCGTAGATCA
80569131 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
80569159 CGAAATTACCCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
80569187 CGATA-TACCCCTA
1 CGAAATTACCCCTA
80569200 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.42, C:0.28, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:80573448 original size:28 final size:28
Alignment explanation
Indices: 80573416--80573484 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
80573406 GCGTAGATCA
80573416 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
80573444 CGAAATTACCCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
80573472 CGATA-TACCCCTA
1 CGAAATTACCCCTA
80573485 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.42, C:0.28, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:80575120 original size:27 final size:27
Alignment explanation
Indices: 80575080--80575191 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
80575070 AGGAAGCGTC
*
80575080 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
80575107 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
80575134 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
80575162 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
80575188 CTGG
1 CTGG
80575192 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:80575186 original size:54 final size:54
Alignment explanation
Indices: 80575080--80575191 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
80575070 AGGAAGCGTC
* *
80575080 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
80575134 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
80575188 CTGG
1 CTGG
80575192 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:80579614 original size:40 final size:40
Alignment explanation
Indices: 80579559--80579808 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
80579549 AACATTGGAA
80579559 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80579599 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80579639 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80579679 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80579719 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80579758 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80579799 CTATATCCGG
1 ATATATCCGG
80579809 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80587926 original size:79 final size:79
Alignment explanation
Indices: 80587732--80587953 Score: 270
Period size: 79 Copynumber: 2.8 Consensus size: 79
80587722 TGCTAGAGAA
* * * *
80587732 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGATATATCCGG
1 CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
80587796 GCTAAGACCGAAGG
66 GCTAAGACCGAAGG
* * * *
80587810 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
1 CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
80587875 GCTAAGACCCGAAGG
66 GCTAAGA-CCGAAGG
* * * * * * *
80587890 CCTTTGTGCAAG-TCACCAAATCCGGGTTATGA-CCGAAGGCAATCGTGCGAGTCGCTATATCCG
1 CATTCGTGCAAGTTCA-CAAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCG
80587953 G
65 G
80587954 TTAAATCCCG
Statistics
Matches: 130, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
78 49 0.38
79 53 0.41
80 28 0.22
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (79 bp):
CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
GCTAAGACCGAAGG
Found at i:80587965 original size:39 final size:40
Alignment explanation
Indices: 80587732--80587953 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
80587722 TGCTAGAGAA
80587732 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
80587772 CATTCGTGC-AGTTGATATATCCGGGCTAAGA-CCGAAGG
1 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
80587810 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
80587850 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * * * * * *
80587890 CCTTTGTGCAAG-TCACCAAATCCGGGTTATGA-CCGAAGG
1 CATTCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGG
* * *
80587929 CAATCGTGCGAGTCGCTATATCCGG
1 CATTCGTGCGAGTTGATATATCCGG
80587954 TTAAATCCCG
Statistics
Matches: 161, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 16 0.10
39 68 0.42
40 77 0.48
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
Found at i:80591366 original size:40 final size:40
Alignment explanation
Indices: 80591258--80591507 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
80591248 CGGGATTTAA
* * * * *
80591258 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80591298 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80591338 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80591378 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80591418 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80591458 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80591498 CCGGATATAT
1 CCGGATATAT
80591508 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80599457 original size:40 final size:40
Alignment explanation
Indices: 80599349--80599598 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
80599339 CGGGATTTAA
* * * * *
80599349 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80599389 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80599429 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80599469 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80599509 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80599549 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80599589 CCGGATATAT
1 CCGGATATAT
80599599 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80603449 original size:49 final size:49
Alignment explanation
Indices: 80603388--80603610 Score: 179
Period size: 49 Copynumber: 4.6 Consensus size: 49
80603378 ACATCAAATT
* *
80603388 CGATGCCATGTCCCAGACAGGTCTTGCACTTACTTTCATATATCAAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGC
* * ** * * ** *
80603437 CGATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTA-CCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAG-GC
* * *
80603486 CGATGCCATGTCCTAGACAGGTCTTACACTAACTTGT-ATATTTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTT-TCATATATCAAGGC
** ** * **
80603535 CGATG-CATGTCCCAGACATATCTTACACTGGCTCTCATA-AT-GTGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGC
* *
80603581 CGATG-CATGTCTCAGACATGTCTTACACTA
1 CGATGCCATGTCCCAGACAGGTCTTACACTA
80603611 GCACACAAAT
Statistics
Matches: 138, Mismatches: 32, Indels: 11
0.76 0.18 0.06
Matches are distributed among these distances:
46 31 0.22
47 2 0.01
48 28 0.20
49 74 0.54
50 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGC
Found at i:80603506 original size:98 final size:97
Alignment explanation
Indices: 80603387--80603572 Score: 266
Period size: 98 Copynumber: 1.9 Consensus size: 97
80603377 CACATCAAAT
* * *
80603387 TCGATGCCATGTCCCAGACAGGTCTTGCACTTACTT-TCATATATCAAGGCCGATGCCGTGTCCC
1 TCGATGCCATGTCCCAGACAGGTCTTACACTAACTTGT-ATATATCAAGGCCGATG-CATGTCCC
* *
80603451 AGATAGGTCTTACACTGGCTCTCATCTACCGGTG
64 AGACAGATCTTACACTGGCTCTCATCTACCGGTG
* * *
80603485 TCGATGCCATGTCCTAGACAGGTCTTACACTAACTTGTATATTTCGAGGCCGATGCATGTCCCAG
1 TCGATGCCATGTCCCAGACAGGTCTTACACTAACTTGTATATATCAAGGCCGATGCATGTCCCAG
*
80603550 ACATATCTTACACTGGCTCTCAT
66 ACAGATCTTACACTGGCTCTCAT
80603573 AATGTGGCCG
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
97 29 0.37
98 48 0.62
99 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (97 bp):
TCGATGCCATGTCCCAGACAGGTCTTACACTAACTTGTATATATCAAGGCCGATGCATGTCCCAG
ACAGATCTTACACTGGCTCTCATCTACCGGTG
Found at i:80605084 original size:30 final size:30
Alignment explanation
Indices: 80605050--80605129 Score: 115
Period size: 30 Copynumber: 2.7 Consensus size: 30
80605040 ATTTACTGAA
* *
80605050 ATGTGGAAGCCTTTGTGGTTTTTGTCAAAT
1 ATGTGGAAGCCTTTATGGTTTTTCTCAAAT
* *
80605080 ATGTGGAAGCCTTTATGGCTTTTCTCAGAT
1 ATGTGGAAGCCTTTATGGTTTTTCTCAAAT
*
80605110 ATGTGGAGGCCTTTATGGTT
1 ATGTGGAAGCCTTTATGGTT
80605130 ATTTTTAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.19, C:0.12, G:0.28, T:0.41
Consensus pattern (30 bp):
ATGTGGAAGCCTTTATGGTTTTTCTCAAAT
Found at i:80605175 original size:29 final size:29
Alignment explanation
Indices: 80605137--80605246 Score: 103
Period size: 29 Copynumber: 3.8 Consensus size: 29
80605127 GTTATTTTTA
*
80605137 GTTATATGTGAGCCCTAGTGGCAAAACCT
1 GTTATATGTGAGCCTTAGTGGCAAAACCT
* * * **
80605166 GTTATGTGTGAGCCTTTGTGGCTATTCTCT
1 GTTATATGTGAGCCTTAGTGGCAAAAC-CT
* **
80605196 GTTATATGTGAGCCTTGGTGGTGAAACCT
1 GTTATATGTGAGCCTTAGTGGCAAAACCT
* * *
80605225 ATTATGTGTGAGCCTTTGTGGC
1 GTTATATGTGAGCCTTAGTGGC
80605247 TATTCTCTAT
Statistics
Matches: 64, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
29 41 0.64
30 23 0.36
ACGTcount: A:0.18, C:0.16, G:0.28, T:0.37
Consensus pattern (29 bp):
GTTATATGTGAGCCTTAGTGGCAAAACCT
Found at i:80605181 original size:59 final size:59
Alignment explanation
Indices: 80605138--80605391 Score: 274
Period size: 59 Copynumber: 4.3 Consensus size: 59
80605128 TTATTTTTAG
*
80605138 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTG
1 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTA
* * ** *
80605197 TTATATGTGAGCCTTGGTGGTGAAACCTATTATGTGTGAGCCTTTGTGGCTATTCTCTA
1 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTA
* * ** ** * * *
80605256 TAATATGTGAGCCTTTTTTACAAAACCTTTTATATGTGGAAGCCTTTTTGGCTATTCTCTA
1 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGT-G-AGCCTTTGTGGCTATTCTCTA
* ** ** ** * *
80605317 TTACATGTGAGCCCTAGTGGTGAAATTTGTTATGTGCAAGCCTTTGTGGTTATGCTCTA
1 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTA
80605376 TTATATGTGAGCCCTA
1 TTATATGTGAGCCCTA
80605392 TTAATGGATA
Statistics
Matches: 158, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
59 114 0.72
60 1 0.01
61 43 0.27
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (59 bp):
TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTA
Found at i:80605200 original size:30 final size:30
Alignment explanation
Indices: 80605167--80605329 Score: 134
Period size: 30 Copynumber: 5.4 Consensus size: 30
80605157 GCAAAACCTG
* *
80605167 TTATGTGTGAGCCTTTGTGGCTATTCTCTG
1 TTATATGTGAGCCTTTGTGGCTATTCTCTA
* **
80605197 TTATATGTGAGCCTTGGTGG-TGAAAC-CTA
1 TTATATGTGAGCCTTTGTGGCT-ATTCTCTA
*
80605226 TTATGTGTGAGCCTTTGTGGCTATTCTCTA
1 TTATATGTGAGCCTTTGTGGCTATTCTCTA
* * ** * ** *
80605256 TAATATGTGAGCCTTTTTTACAAAAC-CTT
1 TTATATGTGAGCCTTTGTGGCTATTCTCTA
*
80605285 TTATATGTGGAAGCCTTTTTGGCTATTCTCTA
1 TTATATGT-G-AGCCTTTGTGGCTATTCTCTA
*
80605317 TTACATGTGAGCC
1 TTATATGTGAGCC
80605330 CTAGTGGTGA
Statistics
Matches: 101, Mismatches: 26, Indels: 12
0.73 0.19 0.09
Matches are distributed among these distances:
29 32 0.32
30 47 0.47
31 13 0.13
32 9 0.09
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (30 bp):
TTATATGTGAGCCTTTGTGGCTATTCTCTA
Found at i:80605326 original size:120 final size:118
Alignment explanation
Indices: 80605158--80605388 Score: 309
Period size: 120 Copynumber: 1.9 Consensus size: 118
80605148 GCCCTAGTGG
* * * * *
80605158 CAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTGTTATATGTGAGCCTTGGTGGTGAAAC
1 CAAAACCTGTTATATGTGAGCCTTTGTGGCTATTCTCTATTACATGTGAGCCCTAGTGGTGAAAC
** *
80605223 CTATTATGTGTGAGCCTTTGTGGCTATTCTCTATAATATGTGAGCCTTTTTTA
66 CTATTATGTGCAAGCCTTTGTGGCTATGCTCTATAATATGTGAGCCTTTTTTA
* *
80605276 CAAAACCTTTTATATGTGGAAGCCTTTTTGGCTATTCTCTATTACATGTGAGCCCTAGTGGTGAA
1 CAAAACCTGTTATATGT-G-AGCCTTTGTGGCTATTCTCTATTACATGTGAGCCCTAGTGGTGAA
** * * *
80605341 ATTTGTTATGTGCAAGCCTTTGTGGTTATGCTCTATTATATGTGAGCC
64 ACCTATTATGTGCAAGCCTTTGTGGCTATGCTCTATAATATGTGAGCC
80605389 CTATTAATGG
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
118 15 0.16
119 1 0.01
120 80 0.83
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (118 bp):
CAAAACCTGTTATATGTGAGCCTTTGTGGCTATTCTCTATTACATGTGAGCCCTAGTGGTGAAAC
CTATTATGTGCAAGCCTTTGTGGCTATGCTCTATAATATGTGAGCCTTTTTTA
Found at i:80605644 original size:30 final size:29
Alignment explanation
Indices: 80605580--80605648 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
80605570 GGATGCCCTT
* * *
80605580 GTGGCTATCTAATGATGTATGGACGTCTTT
1 GTGGCTATCTAAGGATGAATGGA-GTCTTC
80605610 GTGGCTATCTAAGGATGAATGG-GTGCATTC
1 GTGGCTATCTAAGGATGAATGGAGT-C-TTC
80605640 GTGGCTATC
1 GTGGCTATC
80605649 CAAGTCAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.06
29 1 0.03
30 31 0.91
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.35
Consensus pattern (29 bp):
GTGGCTATCTAAGGATGAATGGAGTCTTC
Found at i:80615450 original size:45 final size:44
Alignment explanation
Indices: 80615382--80615466 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
80615372 CAAAGATAAC
*
80615382 AAGAAAGCTGAATAAAGAAATCCAAGATAGAGAAACCCAAAATA
1 AAGAAAGCTGAATAAAGAAATCCAAGATAAAGAAACCCAAAATA
* * *
80615426 AAGAAATCTAGAATAAAGAGATCCAGGATAAAGAAACCCAA
1 AAGAAAGCT-GAATAAAGAAATCCAAGATAAAGAAACCCAA
80615467 GATACGATAC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 8 0.22
45 28 0.78
ACGTcount: A:0.58, C:0.14, G:0.16, T:0.12
Consensus pattern (44 bp):
AAGAAAGCTGAATAAAGAAATCCAAGATAAAGAAACCCAAAATA
Found at i:80615470 original size:15 final size:15
Alignment explanation
Indices: 80615393--80615470 Score: 68
Period size: 15 Copynumber: 5.2 Consensus size: 15
80615383 AGAAAGCTGA
*
80615393 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
* *
80615408 ATAGAGAAACCCAAA
1 ATAAAGAAACCCAAG
* *
80615423 ATAAAGAAA-TCTAG
1 ATAAAGAAACCCAAG
* * *
80615437 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
80615453 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
80615468 ATA
1 ATA
80615471 CGATACTATG
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
14 2 0.04
15 43 0.91
16 2 0.04
ACGTcount: A:0.58, C:0.14, G:0.15, T:0.13
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:80628461 original size:35 final size:35
Alignment explanation
Indices: 80628415--80628485 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
80628405 ATTAAGGGTG
* *
80628415 TTTGTCATATTAAGGGATTTAGCCTGGACTTGTAA
1 TTTGTCATATTAACGGATTTAGCCTGGACTGGTAA
80628450 TTTGTCATATTAACGGATTTAGCCTGGACTGGTAA
1 TTTGTCATATTAACGGATTTAGCCTGGACTGGTAA
80628485 T
1 T
80628486 CCCGACATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (35 bp):
TTTGTCATATTAACGGATTTAGCCTGGACTGGTAA
Found at i:80629905 original size:46 final size:46
Alignment explanation
Indices: 80629838--80630059 Score: 236
Period size: 46 Copynumber: 4.8 Consensus size: 46
80629828 TGTAACCCGC
* * *
80629838 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
80629884 CCATAACTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
80629930 ACATCTCTCGAACTCAGACTCAACTCAACGAG-TCCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCT-CGGACATTCGCAT
* *
80629977 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
80630023 CCATAAGTGAACTCAGACTCAACTCAAAGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80630060 TGCCCAAATA
Statistics
Matches: 149, Mismatches: 18, Indels: 18
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 109 0.73
47 31 0.21
49 4 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:80643925 original size:40 final size:40
Alignment explanation
Indices: 80643798--80643959 Score: 150
Period size: 40 Copynumber: 4.0 Consensus size: 40
80643788 TTCGAATGAT
* * *
80643798 ATCCGGGCTAAG-TCCCGAAGGCTTT-GTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCTTTCGTGC-GAGTTACTAA
* *
80643838 ATCCGGACTAAGATCCGACGGCATACGTGCGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGC-T---TTCGTGCGAGTTACTAA
* *
80643882 ATCCGGACTAAGATCCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTTCGTGCGAGTTACTAA
** *
80643922 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCTTTCGTGCGAGTTACT
80643960 GTAACCGGGC
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
39 1 0.01
40 63 0.62
41 2 0.02
43 1 0.01
44 30 0.30
45 4 0.04
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCTTTCGTGCGAGTTACTAA
Found at i:80643968 original size:40 final size:40
Alignment explanation
Indices: 80643798--80643986 Score: 136
Period size: 40 Copynumber: 4.6 Consensus size: 40
80643788 TTCGAATGAT
* * *
80643798 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGAGC-GAGCT-ACTAA
* * * *
80643838 ATCCGGACTAAGAT-CCGACGGCATACGTGCGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCAT---T-CGAGCGAGCTACTAA
* *
80643882 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGAGCGAGCTACTAA
* * * *
80643922 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACT-AA
*
80643963 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
80643987 TGAATGTGTA
Statistics
Matches: 124, Mismatches: 16, Indels: 18
0.78 0.10 0.11
Matches are distributed among these distances:
39 1 0.01
40 83 0.67
41 5 0.04
44 30 0.24
45 5 0.04
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTAA
Found at i:80652651 original size:24 final size:24
Alignment explanation
Indices: 80652624--80652723 Score: 83
Period size: 24 Copynumber: 4.0 Consensus size: 24
80652614 TGACATTATG
*
80652624 CTAAGTAAAATAAGACCATGGCAT
1 CTAAGTAAAATAAGTCCATGGCAT
* * * *
80652648 CTAAATGAATTAAGTTCATGGCAATGT
1 CTAAGTAAAATAAGTCCATGGC-A--T
* *
80652675 GCTAAGTAAAATAGGCCCATGGCAT
1 -CTAAGTAAAATAAGTCCATGGCAT
* *
80652700 CTAAGTAAAACAAGTCCATTGCAT
1 CTAAGTAAAATAAGTCCATGGCAT
80652724 TGTGCTAAAG
Statistics
Matches: 57, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
24 37 0.65
25 2 0.04
27 2 0.04
28 16 0.28
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (24 bp):
CTAAGTAAAATAAGTCCATGGCAT
Found at i:80652728 original size:52 final size:52
Alignment explanation
Indices: 80652617--80652731 Score: 140
Period size: 52 Copynumber: 2.2 Consensus size: 52
80652607 TAGAATATGA
* * ** *
80652617 CATTATGCTAAGTAAAATAAGACCATGGCATCTAAATGAATTAAGTTCATGG
1 CATTGTGCTAAGTAAAATAAGACCATGGCATCTAAATAAAACAAGTCCATGG
* * * * *
80652669 CAATGTGCTAAGTAAAATAGGCCCATGGCATCTAAGTAAAACAAGTCCATTG
1 CATTGTGCTAAGTAAAATAAGACCATGGCATCTAAATAAAACAAGTCCATGG
80652721 CATTGTGCTAA
1 CATTGTGCTAA
80652732 AGTGAGAAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (52 bp):
CATTGTGCTAAGTAAAATAAGACCATGGCATCTAAATAAAACAAGTCCATGG
Found at i:80652823 original size:51 final size:51
Alignment explanation
Indices: 80652760--80652907 Score: 237
Period size: 51 Copynumber: 2.9 Consensus size: 51
80652750 TGAACCTTAG
80652760 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* * *
80652811 GACTAAAATAGCTTTGGACACAAGTGTGGTACTAGGTGAAGGCCACTTTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
80652862 GAATAAAATAGCTTTGG-CTACAAAG-GTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-AC-AAGTGTGGTACTATGTGAAGGCCAC
80652908 CATGTATCCG
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
50 1 0.01
51 86 0.96
52 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
Found at i:80656579 original size:35 final size:35
Alignment explanation
Indices: 80656539--80656608 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
80656529 AAACACATCC
* *
80656539 CAAACCGTTTAATGACGCATCACTGAAAATCACTA
1 CAAACCGTTTAATAACGCATCACTAAAAATCACTA
80656574 CAAACCGTTTAATAACGCATCACTAAAAATCACTA
1 CAAACCGTTTAATAACGCATCACTAAAAATCACTA
80656609 ACTCTTTACC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.23
Consensus pattern (35 bp):
CAAACCGTTTAATAACGCATCACTAAAAATCACTA
Found at i:80668377 original size:45 final size:45
Alignment explanation
Indices: 80668313--80668481 Score: 180
Period size: 45 Copynumber: 3.7 Consensus size: 45
80668303 TGTAACCCGC
*
80668313 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTGCAT
* * *
80668358 CCATAAGTGAACTCGGACTCAACTCAACGAGCTAGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG--TTGCAT
* *** * *
80668404 ACATCTCTCGAACTCGGACTCAACTCAGCGAGTTCGGACAT-TTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG--ATGTTGCAT
*
80668451 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
80668482 TTCAGATGCC
Statistics
Matches: 99, Mismatches: 19, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
45 37 0.37
46 28 0.28
47 32 0.32
49 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTGCAT
Found at i:80670915 original size:30 final size:30
Alignment explanation
Indices: 80670880--80670959 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
80670870 CAAGAAAACT
* *
80670880 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAAACCAAGATAAAGAAACCCA
* *
80670910 GAATAAAGAAAACC-AGAATAAAGAGATCCA
1 GAATAAAGAAAACCAAG-ATAAAGAAACCCA
* *
80670940 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAAACCAAGATA
80670960 CAATACTATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 2 0.05
30 38 0.90
31 2 0.05
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAAACCAAGATAAAGAAACCCA
Found at i:80670919 original size:15 final size:15
Alignment explanation
Indices: 80670880--80670954 Score: 80
Period size: 15 Copynumber: 5.0 Consensus size: 15
80670870 CAAGAAAACT
*
80670880 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
80670895 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
*
80670910 GAATAAAGAAAACCA
1 GAATAAAGAAACCCA
* *
80670925 GAATAAAGAGATCCA
1 GAATAAAGAAACCCA
*
80670940 GGATAAAGAAACCCA
1 GAATAAAGAAACCCA
80670955 AGATACAATA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
14 1 0.02
15 47 0.96
16 1 0.02
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.09
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:80673985 original size:46 final size:44
Alignment explanation
Indices: 80673918--80674090 Score: 138
Period size: 46 Copynumber: 3.8 Consensus size: 44
80673908 AACCCGCCCA
*
80673918 TAAGTGAACTC-AGACTCAACTCAACGAGCTCGGGCATTCGCATCC
1 TAAGTGAACTCGA-ACTCAACTCAACGAGCTCGGACATT-GCATCC
* *
80673963 GTAAGTGAACTCGAACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTC
1 -TAAGTGAACTCGAACTCAACTCAACGAGCTC-G--GAC-A-TTGCATC-C
* * *
80674014 T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
1 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGACA-TTGCATCC
* * *
80674056 ATAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -TAAGTGAACTCGAACTCAACTCAACGAGCTCGGA
80674091 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 9, Indels: 22
0.78 0.07 0.16
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 2 0.02
46 59 0.55
47 26 0.24
49 2 0.02
50 6 0.06
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGAACTCAACTCAACGAGCTCGGACATTGCATCC
Done.