Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 261 of 438
Found at i:81057046 original size:71 final size:71
Alignment explanation
Indices: 81056957--81057120 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81056947 GAGATGTATC
81056957 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81057022 AGGACA
66 AGGACA
81057028 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81057093 AGGACA
66 AGGACA
81057099 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81057121 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81064554 original size:68 final size:70
Alignment explanation
Indices: 81064482--81064679 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
81064472 ACACCCTGTA
* * * *
81064482 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
81064544 ATAAAT
65 ATAAAT
*
81064550 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
81064615 ATAAAT
65 ATAAAT
*
81064621 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
81064680 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:81064593 original size:41 final size:41
Alignment explanation
Indices: 81064548--81064665 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81064538 TGAAAGATAA
81064548 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81064589 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81064619 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81064660 ATGTAG
1 ATGTAG
81064666 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81064605 original size:71 final size:71
Alignment explanation
Indices: 81064516--81064679 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81064506 GAGATGTATC
81064516 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81064581 AGGACA
66 AGGACA
81064587 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81064652 AGGACA
66 AGGACA
81064658 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81064680 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81069395 original size:47 final size:47
Alignment explanation
Indices: 81069326--81069711 Score: 589
Period size: 47 Copynumber: 8.3 Consensus size: 47
81069316 CCCTTCGGGA
* * *
81069326 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
81069373 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
81069420 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
81069467 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTC-AC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
81069513 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
81069560 CCTATCACATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
81069607 CTTATCACGTATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
81069654 CTTATCACATATAT--ACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
81069699 CTTATCACATATA
1 CTTATCACATATA
81069712 CATATCTTGT
Statistics
Matches: 316, Mismatches: 22, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
45 44 0.14
46 43 0.14
47 229 0.72
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:81069643 original size:187 final size:185
Alignment explanation
Indices: 81069328--81069689 Score: 580
Period size: 187 Copynumber: 1.9 Consensus size: 185
81069318 CTTCGGGACT
* * *
81069328 TATCACATTTATACACTTTCACATCCATCACATTGGCCATTCAGCCTTATCACATATATACACTT
1 TATCACATATATACACTTTCACATCCATCACATTGGCCACTCAGCCCTATCACATATATACACTT
* * *
81069393 TCACATTCATCACATTGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATTGG
66 TCACATTCATCACATTGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
*
81069458 CCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCACCC
131 CCATTCGGCCTTATCACATATAT--ACTTTCACATTCATCACATTGGTCACTCACCC
* * * *
81069515 TATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCCTATCACATATATATACTT
1 TATCACATATATACACTTTCACATCCATCACATTGGCCACTCAGCCCTATCACATATATACACTT
* * *
81069580 TCACATTCATCACATTGGCCACTCGGCCTTATCACGTATATATACTTTCACATTCATCACATTGG
66 TCACATTCATCACATTGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
81069645 CCATTCGGCCTTATCACATATATACTTTCACATTCATCACATTGG
131 CCATTCGGCCTTATCACATATATACTTTCACATTCATCACATTGG
81069690 CCATTCGGCC
Statistics
Matches: 161, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
185 21 0.13
187 140 0.87
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.35
Consensus pattern (185 bp):
TATCACATATATACACTTTCACATCCATCACATTGGCCACTCAGCCCTATCACATATATACACTT
TCACATTCATCACATTGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
CCATTCGGCCTTATCACATATATACTTTCACATTCATCACATTGGTCACTCACCC
Found at i:81069661 original size:22 final size:22
Alignment explanation
Indices: 81069635--81069708 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
81069625 TTTCACATTC
81069635 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * * *
81069657 ATCACATATATACTTTC-ACATT
1 ATCACAT-TGGCCATTCGGCCTT
81069679 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
81069702 ATCACAT
1 ATCACAT
81069709 ATACATATCT
Statistics
Matches: 37, Mismatches: 12, Indels: 6
0.67 0.22 0.11
Matches are distributed among these distances:
22 22 0.59
23 15 0.41
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:81078812 original size:43 final size:43
Alignment explanation
Indices: 81078709--81078834 Score: 128
Period size: 43 Copynumber: 3.0 Consensus size: 43
81078699 GAATTAAGAA
* * * * ** *
81078709 ATCCGAGCTCGTTGAGTGGTCCAAATTAATGATATATGAG-GC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGC
* * *
81078751 ATCTGAGCTCGTTCAGTGGTCCGAGTTCATTATGGATGCGAGC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGC
* * *
81078794 ATCCGAGCCCGTTGAGTGGTCTGAGTTCATAATGGCTGCGA
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGA
81078835 TACATGTAAC
Statistics
Matches: 68, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 31 0.46
43 37 0.54
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (43 bp):
ATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGC
Found at i:81078874 original size:51 final size:51
Alignment explanation
Indices: 81078793--81078892 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
81078783 TGGATGCGAG
* * *
81078793 CATCCGAGCCCGTTGAGTGGTCTGAGTTCATAATGGCTGCGATACATGTAA
1 CATCCGAGCCCGTTGAGAGGTCTGAATTCATAATGGATGCGATACATGTAA
** * *
81078844 CATCCGAGCTTGTTGAGAGGT-TCGAATTCATTATGGATGCGTTACATGT
1 CATCCGAGCCCGTTGAGAGGTCT-GAATTCATAATGGATGCGATACATGT
81078893 TATAAGGTAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 1 0.02
51 40 0.98
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (51 bp):
CATCCGAGCCCGTTGAGAGGTCTGAATTCATAATGGATGCGATACATGTAA
Found at i:81081326 original size:37 final size:37
Alignment explanation
Indices: 81081274--81081344 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
81081264 TTATTACGAA
81081274 GTCTTACCCGAACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGAACATAATCTCCACACGTAGTCATCGG
*
81081311 GTCTTACCCGGACATAATCTCCACACGTAGTCAT
1 GTCTTACCCGAACATAATCTCCACACGTAGTCAT
81081345 TCGGCTTTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGAACATAATCTCCACACGTAGTCATCGG
Found at i:81081355 original size:37 final size:37
Alignment explanation
Indices: 81081275--81081355 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
81081265 TATTACGAAG
*
81081275 TCTTACCCGAACATAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGAACATAATCTCCACACGTAGTCATCGGC
*
81081312 TCTTACCCGGACATAATCTCCACACGTAGTCATTCGGC
1 TCTTACCCGAACATAATCTCCACACGTAGTCA-TCGGC
81081350 T-TTACC
1 TCTTACC
81081356 ACACATACAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
37 36 0.88
38 5 0.12
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (37 bp):
TCTTACCCGAACATAATCTCCACACGTAGTCATCGGC
Found at i:81081400 original size:48 final size:48
Alignment explanation
Indices: 81081344--81081482 Score: 260
Period size: 48 Copynumber: 2.9 Consensus size: 48
81081334 CACGTAGTCA
*
81081344 TTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCC
1 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCC
81081392 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCC
1 TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCC
*
81081440 TTCAGCTTTACCACATATACATATCACACATATATTTCACATT
1 TTCGGCTTTACCACATATACATATCACACATATATTTCACATT
81081483 CATCACATCG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (48 bp):
TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCC
Found at i:81085097 original size:24 final size:25
Alignment explanation
Indices: 81085061--81085110 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
81085051 AAGGGATTTA
81085061 CACACACACAGTGC-CTTAATCATT
1 CACACACACAGTGCTCTTAATCATT
* *
81085085 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
81085110 C
1 C
81085111 GTTATTACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:81085336 original size:40 final size:40
Alignment explanation
Indices: 81085287--81085660 Score: 368
Period size: 40 Copynumber: 9.5 Consensus size: 40
81085277 CCAGCATGAT
* *
81085287 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
81085327 TGCTCTTCGGAACTTAGTCCGAATCCATGACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
81085367 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
81085407 TGCTCTTC-GAATTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
81085446 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
81085486 TGCTCTTCGGAATTTAG-CCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
81085525 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * * * *
81085564 TTGC-CTTCGGGTCTTAACCCGGATATAACAACTCGCAC-AA
1 -TGCTCTTCGGAACTTAGCCCGGATACATC-ACTAGCACGAA
** * * **
81085604 TGC-CTTCGGGTCTTAGCCCGGATATATTACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
81085643 TGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGAACTTAGCC
81085661 GGGTATCATT
Statistics
Matches: 295, Mismatches: 33, Indels: 13
0.87 0.10 0.04
Matches are distributed among these distances:
38 6 0.02
39 140 0.47
40 149 0.51
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:81085468 original size:79 final size:80
Alignment explanation
Indices: 81085287--81085548 Score: 377
Period size: 79 Copynumber: 3.3 Consensus size: 80
81085277 CCAGCATGAT
* * * * *
81085287 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAATC
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGTCCGGATA
*
81085352 CATGACTAGCACGAA
66 CATCACTAGCACGAA
* *
81085367 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTC-GAATTTAGTCTGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGTCCGGATA
81085431 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* * *
81085446 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGTCCGGATA
* *
81085510 TATCATTAGCACGAA
66 CATCACTAGCACGAA
*
81085525 TGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATA
81085549 TAACCACAAG
Statistics
Matches: 166, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
78 7 0.04
79 106 0.64
80 53 0.32
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGTCCGGATA
CATCACTAGCACGAA
Found at i:81085561 original size:79 final size:80
Alignment explanation
Indices: 81085287--81085651 Score: 372
Period size: 79 Copynumber: 4.6 Consensus size: 80
81085277 CCAGCATGAT
* ** * * * *
81085287 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAATC
1 TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAATTTAGTCCGGATA
*
81085352 CATGACTAGCACGAA
66 CATCACTAGCACGAA
* * * *
81085367 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTC-GAATTTAGTCTGGATA
1 TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAATTTAGTCCGGATA
81085431 CATCACTAGCACGAA
66 CATCACTAGCACGAA
*
81085446 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAATTTAGTCCGGATA
* *
81085510 TATCATTAGCACGAA
66 CATCACTAGCACGAA
* * * **
81085525 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AATTGC-CTTCGG-GTCTTAACCCGG
1 TGCTCTTCGGAATTTAGCCCGGATAT-ATCACTAGCACGAA-TGCTCTTCGGAAT-TTAGTCCGG
* * *
81085586 ATATAACAACTCGCAC-AA
63 ATACATC-ACTAGCACGAA
* * **
81085604 TGC-CTTCGG-GTCTTAGCCCGGATATATTACTAGCATAAATGC-CTTCGG
1 TGCTCTTCGGAAT-TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG
81085652 GACTTAGCCG
Statistics
Matches: 248, Mismatches: 28, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
77 2 0.01
78 45 0.18
79 142 0.57
80 59 0.24
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (80 bp):
TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAATTTAGTCCGGATA
CATCACTAGCACGAA
Found at i:81087620 original size:37 final size:37
Alignment explanation
Indices: 81087565--81087691 Score: 220
Period size: 37 Copynumber: 3.4 Consensus size: 37
81087555 TTATTACGAA
81087565 GTCTTACCC-GACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
81087601 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
81087638 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
81087675 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
81087692 TTTCCAAGTT
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 9 0.10
37 72 0.84
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:81087790 original size:48 final size:48
Alignment explanation
Indices: 81087731--81087928 Score: 328
Period size: 48 Copynumber: 4.2 Consensus size: 48
81087721 TGTTACAACA
*
81087731 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
81087779 TTCACACTAGCCATTTGGCTTTACCACATATACATATCACAC--ATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
81087825 TTCACATTAGCCCTTCGGCTTTACCACATAGACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
81087873 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
81087921 TTCACATT
1 TTCACATT
81087929 CATCACATCG
Statistics
Matches: 140, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 42 0.30
48 98 0.70
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:81087842 original size:94 final size:95
Alignment explanation
Indices: 81087731--81087928 Score: 326
Period size: 94 Copynumber: 2.1 Consensus size: 95
81087721 TGTTACAACA
* *
81087731 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACACTAGCCATTTG
1 TTCACATTAGCCATTCGGCTTTACCACACAGACATATCACACATATATTTCACACTAGCCATTCG
81087796 GCTTTACCACATATACATATCACAC-ATAT
66 GCTTTACCACATATACATATCACACAATAT
* * * *
81087825 TTCACATTAGCCCTTCGGCTTTACCACATAGACATATCACACATATATTTCACATTAGCCCTTCG
1 TTCACATTAGCCATTCGGCTTTACCACACAGACATATCACACATATATTTCACACTAGCCATTCG
81087890 GCTTTACCACATATACATATCACACATATAT
66 GCTTTACCACATATACATATCACACA-ATAT
81087921 TTCACATT
1 TTCACATT
81087929 CATCACATCG
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 84 0.88
96 12 0.12
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (95 bp):
TTCACATTAGCCATTCGGCTTTACCACACAGACATATCACACATATATTTCACACTAGCCATTCG
GCTTTACCACATATACATATCACACAATAT
Found at i:81093192 original size:15 final size:15
Alignment explanation
Indices: 81093172--81093227 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
81093162 TATGATATTG
81093172 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
81093187 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * *
81093202 TGTCCTGGACTTCTT
1 TATCTTGGATTTCTT
*
81093217 TACCTT-GATTT
1 TATCTTGGATTT
81093228 TCATGCCATC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
14 4 0.12
15 30 0.88
ACGTcount: A:0.12, C:0.18, G:0.14, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:81096427 original size:2 final size:2
Alignment explanation
Indices: 81096420--81096448 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
81096410 GATATTCATG
81096420 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81096449 GAATACTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81096784 original size:21 final size:21
Alignment explanation
Indices: 81096759--81096799 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81096749 TTTAAATTTG
81096759 GAAAATCACTAAAAATTGTAC
1 GAAAATCACTAAAAATTGTAC
* * *
81096780 GAAAATGATTATAAATTGTA
1 GAAAATCACTAAAAATTGTA
81096800 ATTTATATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.29
Consensus pattern (21 bp):
GAAAATCACTAAAAATTGTAC
Found at i:81099851 original size:46 final size:45
Alignment explanation
Indices: 81099799--81099974 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
81099789 TATTTGGGCA
*
81099799 TCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
81099845 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * * *
81099892 TCCGAGCTCGTTGAGTTGATTCTGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
81099938 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81099975 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 65 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:81099954 original size:93 final size:93
Alignment explanation
Indices: 81099795--81099966 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
81099785 AGGATATTTG
* * *
81099795 GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
*
81099860 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* * *
81099888 GGCATCCGAGCTCGTTGAGTTGA-TTCTGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTAC-GAGTTCACTTATGGATACGAACGCCCGAACTCGTTGA
81099952 GTTGAGTCCAAGTTC
65 GTTGAGTCCAAGTTC
81099967 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:81104813 original size:42 final size:43
Alignment explanation
Indices: 81104742--81104856 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 43
81104732 GAATTAAGAA
* * *
81104742 ATCCGAGCTCGTTGAGTGGTCCAAATTCATGATATATGAG-GC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATAGATGAGAGC
* * * * *
81104784 ATCCGAGCTCGTTCAATGGTCCGAGTTCATTATGGATGCGAGC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATAGATGAGAGC
* *
81104827 ATCCGAGCCCGTTGAGTGGTCTGAGTTCAT
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCAT
81104857 AATGGCTTCG
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 32 0.53
43 28 0.47
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (43 bp):
ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATAGATGAGAGC
Found at i:81108437 original size:21 final size:22
Alignment explanation
Indices: 81108411--81108455 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
81108401 GTTTTGTAAT
*
81108411 TGGTATTTCT-CTAT-TTCTCTC
1 TGGTA-TTCTGCTATGTTCTATC
81108432 TGGTATTCTGCTATGTTCTATC
1 TGGTATTCTGCTATGTTCTATC
81108454 TG
1 TG
81108456 TTGGGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.19
21 9 0.43
22 8 0.38
ACGTcount: A:0.11, C:0.20, G:0.16, T:0.53
Consensus pattern (22 bp):
TGGTATTCTGCTATGTTCTATC
Found at i:81108695 original size:15 final size:15
Alignment explanation
Indices: 81108675--81108730 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
81108665 TATGATATTG
81108675 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
81108690 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * *
81108705 TGTCCTGGACTTCTT
1 TATCTTGGATTTCTT
*
81108720 TACCTT-GATTT
1 TATCTTGGATTT
81108731 TCATGCCATA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
14 4 0.12
15 30 0.88
ACGTcount: A:0.12, C:0.18, G:0.14, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:81111679 original size:51 final size:51
Alignment explanation
Indices: 81111582--81111680 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 51
81111572 TGGATGCGAG
* *
81111582 CATCCGAGCCCATTGAGTGGTCTGAGTTCATAATGGCTGCGATACATGTAA
1 CATCCGAGCCCATTGAGAGGTCTGAGTTCATAATGGATGCGATACATGTAA
* * * * *
81111633 CATCCGAGCTCGTTGAGAGGT-TCGAGTTCATTATGGATGTGTTACATG
1 CATCCGAGCCCATTGAGAGGTCT-GAGTTCATAATGGATGCGATACATG
81111681 ATATAAGGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 1 0.03
51 39 0.98
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (51 bp):
CATCCGAGCCCATTGAGAGGTCTGAGTTCATAATGGATGCGATACATGTAA
Found at i:81111928 original size:2 final size:2
Alignment explanation
Indices: 81111921--81111947 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
81111911 GATATTCATG
81111921 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
81111948 GAATATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81116147 original size:46 final size:45
Alignment explanation
Indices: 81116094--81116268 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
81116084 TATTTGGGCA
81116094 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
81116140 TCCGAACTCGTTGAGTTGAGT-CGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
81116186 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
81116232 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81116269 CGGGTTACAT
Statistics
Matches: 107, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 8 0.07
46 83 0.78
47 8 0.07
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:81116247 original size:92 final size:93
Alignment explanation
Indices: 81116090--81116260 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
81116080 AGGATATTTG
* * *
81116090 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
81116155 TTGAGTC-GAGTTCGAGAGATGTAACTA
66 TTGAGTCTGAGTTCGAGAGATGTAACTA
* *
81116182 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
81116247 TTGAGTCTGAGTTC
66 TTGAGTCTGAGTTC
81116261 ACTTATGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 67 0.92
93 6 0.08
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCTGAGTTCGAGAGATGTAACTA
Found at i:81121643 original size:46 final size:45
Alignment explanation
Indices: 81121590--81121766 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
81121580 TATTTGGGCA
81121590 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
81121636 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
81121683 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
81121729 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
81121767 CGGGTTACAT
Statistics
Matches: 110, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 69 0.63
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:81121745 original size:93 final size:93
Alignment explanation
Indices: 81121586--81121757 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
81121576 AGGTTATTTG
* * *
81121586 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
81121651 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
81121679 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
81121744 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
81121758 ACTTATGGAC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:81122435 original size:17 final size:19
Alignment explanation
Indices: 81122393--81122436 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
81122383 ATGAAATTTT
*
81122393 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
81122412 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
81122430 AA-TATTA
1 AATTATTA
81122437 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:81124319 original size:27 final size:28
Alignment explanation
Indices: 81124252--81124308 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
81124242 GCGTAGATCA
81124252 CGAAATTACCCCTAAAGAGAAAAATTAC
1 CGAAATTACCCCTAAAGAGAAAAATTAC
81124280 CGAAATTACCCCTAAAGAGAAAAATTAC
1 CGAAATTACCCCTAAAGAGAAAAATTAC
81124308 C
1 C
81124309 AATATACCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.49, C:0.23, G:0.11, T:0.18
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGAAAAATTAC
Found at i:81125727 original size:39 final size:40
Alignment explanation
Indices: 81125684--81125849 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
81125674 CGGAATATAA
81125684 CCGGATATAACCACGT-GCACAAATGCCTTC-GGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
81125723 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81125763 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
81125803 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
81125842 CCGGATAT
1 CCGGATAT
81125850 CATTCAATTT
Statistics
Matches: 101, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
38 1 0.01
39 36 0.36
40 64 0.63
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81125840 original size:79 final size:79
Alignment explanation
Indices: 81125700--81125847 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
81125690 ATAACCACGT
*
81125700 GCACAAATGCCTTCGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GCACAAATGCCTTCGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCCC
81125765 GGATGTAGCCACTA
66 GGATGTAGCCACTA
* * * * *
81125779 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGG-CTTAG
1 GCACAAATGCCTTC-GGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGTCTTAG
81125841 CCCGGAT
63 CCCGGAT
81125848 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
79 28 0.47
80 32 0.53
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCCC
GGATGTAGCCACTA
Found at i:81132920 original size:40 final size:40
Alignment explanation
Indices: 81132875--81133041 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
81132865 CGGAATATAA
81132875 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
81132915 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81132955 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
81132995 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
81133034 CCGGATAT
1 CCGGATAT
81133042 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81133025 original size:80 final size:79
Alignment explanation
Indices: 81132891--81133039 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
81132881 ATAACCACGT
*
81132891 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
81132956 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
81132971 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
81133034 CCGGAT
64 CCGGAT
81133040 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:81136322 original size:17 final size:19
Alignment explanation
Indices: 81136280--81136323 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
81136270 ATGAAATTTT
*
81136280 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
81136299 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
81136317 AA-TATTA
1 AATTATTA
81136324 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:81138164 original size:27 final size:28
Alignment explanation
Indices: 81138133--81138188 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
81138123 GCGTAGATCA
81138133 CGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
81138160 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
81138188 C
1 C
81138189 ATATACCCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.46, C:0.25, G:0.11, T:0.18
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:81148358 original size:29 final size:29
Alignment explanation
Indices: 81148326--81148404 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 29
81148316 ATACCCTCCG
** *
81148326 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCAAATATTTCC
* **
81148355 AGCTTGCACACTTAGTGCCAAATATTTCC
1 AGCTCGCACACCCAGTGCCAAATATTTCC
* **
81148384 AGCACGCACACTTAGTGCCAA
1 AGCTCGCACACCCAGTGCCAA
81148405 TCTCGTCACC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCAAATATTTCC
Found at i:81153989 original size:46 final size:45
Alignment explanation
Indices: 81153936--81154112 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
81153926 TATTTGGGCA
81153936 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAA-G
* *** * *
81153982 TCCGAACTCGTTGAGTTGATTCCGAGTTCGAGAGATGCAACT-AGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGA-GAAG
* *
81154029 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAA-G
* * *
81154075 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
81154113 CGGGTTACAT
Statistics
Matches: 108, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 68 0.63
47 31 0.29
48 2 0.02
49 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAAG
Found at i:81154091 original size:93 final size:93
Alignment explanation
Indices: 81153932--81154103 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81153922 AGGATATTTG
* *
81153932 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
*
81153997 TTGATTCCGAGTTCGAGAGATGCAACTA
66 TTGAGTCCGAGTTCGAGAGATGCAACTA
* * *
81154025 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
*
81154090 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
81154104 ACTTATGGAC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGCAACTA
Found at i:81154473 original size:10 final size:10
Alignment explanation
Indices: 81154458--81154490 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
81154448 GATTACTCCC
81154458 TCCTTTTCAT
1 TCCTTTTCAT
81154468 TCCTTTTCAT
1 TCCTTTTCAT
81154478 TCCTTTTCAT
1 TCCTTTTCAT
81154488 TCC
1 TCC
81154491 GTATACCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.09, C:0.33, G:0.00, T:0.58
Consensus pattern (10 bp):
TCCTTTTCAT
Found at i:81157234 original size:27 final size:27
Alignment explanation
Indices: 81157193--81157246 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
81157183 TGCAATGTGA
* *
81157193 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
81157220 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
81157247 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:81157572 original size:49 final size:48
Alignment explanation
Indices: 81157496--81157674 Score: 207
Period size: 49 Copynumber: 3.6 Consensus size: 48
81157486 ATTGTGAGGT
*
81157496 CACATGTGTAGTACTAAATGCAGGCTACTACGTGTACTGGATAATTGGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-GATAATTGGA
* * * * *
81157545 CGCATGTGTAGTACTAAGTGCAAGCTACTAGGCGTACCTGATAACTTCGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTGATAA-TTGGA
* * *
81157595 TCACGTGTGTAGTGA-TAAGTGCAGGCTACTACATGTACTAGATAATTGGT
1 -CACATGTGTAGT-ACTAAGTGCAGGCTACTACGTGTACT-GATAATTGGA
*
81157645 CACATGTGTAGTGCTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
81157675 TGCGTACCGG
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
49 63 0.58
50 11 0.10
51 33 0.31
52 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (48 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGATAATTGGA
Found at i:81157673 original size:100 final size:100
Alignment explanation
Indices: 81157495--81157687 Score: 280
Period size: 100 Copynumber: 1.9 Consensus size: 100
81157485 TATTGTGAGG
* * *
81157495 TCACATGTGTAGTACTAAATGCAGGCTACTACGTGTACTGGATAATTGGACGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAATGCAGGCTACTACATGTACTAGATAATTGGACACATGTGTAGTACT
*
81157560 AAGTGCAAGCTACTAGGCGTACCTGATAACTTCGA
66 AAGTGCAAGCTACTAGGCGTACCGGATAACTTCGA
* * * *
81157595 TCACGTGTGTAGTGA-TAAGTGCAGGCTACTACATGTACTAGATAATTGGTCACATGTGTAGTGC
1 TCACATGTGTAGT-ACTAAATGCAGGCTACTACATGTACTAGATAATTGGACACATGTGTAGTAC
* *
81157659 TAAGTGCAGGCTACTATGCGTACCGGATA
65 TAAGTGCAAGCTACTAGGCGTACCGGATA
81157688 GCCTTGTCTA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 81 0.99
101 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAATGCAGGCTACTACATGTACTAGATAATTGGACACATGTGTAGTACT
AAGTGCAAGCTACTAGGCGTACCGGATAACTTCGA
Found at i:81163481 original size:49 final size:51
Alignment explanation
Indices: 81163348--81163542 Score: 193
Period size: 49 Copynumber: 3.9 Consensus size: 51
81163338 ATCTATTGTG
* * *
81163348 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTT
* * * * **
81163399 CGATCACGTGTGTAGTACTAAGTGCAAGCTACTA-GTGTATCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTT
* * * **
81163448 AGGTCACGTATGTAGTACTAAGTGTAGGTTACTACGTGTACTGGATAA-TT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTT
* * * *
81163498 -GGTCGCATGTGTAGTACTAAGTGAAGGCTACTATG-GTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
81163543 GCCTTGTCTA
Statistics
Matches: 116, Mismatches: 26, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
48 8 0.07
49 59 0.51
50 18 0.16
51 31 0.27
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTT
Found at i:81164764 original size:40 final size:40
Alignment explanation
Indices: 81164709--81164788 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
81164699 CTATGTTTTC
81164709 ATGTGATGATATAGTTAGCTTTGTTTGTTATGCATGATTG
1 ATGTGATGATATAGTTAGCTTTGTTTGTTATGCATGATTG
81164749 ATGTGATGATATAGTTAGCTTTGTTTGTTATGCATGATTG
1 ATGTGATGATATAGTTAGCTTTGTTTGTTATGCATGATTG
81164789 GTAATACATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.05, G:0.25, T:0.47
Consensus pattern (40 bp):
ATGTGATGATATAGTTAGCTTTGTTTGTTATGCATGATTG
Found at i:81165274 original size:15 final size:15
Alignment explanation
Indices: 81165254--81165311 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
81165244 TATGATATCA
81165254 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
81165269 TATCTTGAATTTCTT
1 TATCTTGGATTTCTT
* * *
81165284 TTTCCTGGACTTCTT
1 TATCTTGGATTTCTT
*
81165299 TATCTTGGTTTTC
1 TATCTTGGATTTC
81165312 ATGTCATCTC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.59
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:81167242 original size:42 final size:43
Alignment explanation
Indices: 81167183--81167284 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 43
81167173 AGTGAAAAAC
* * **
81167183 TTGAGTGGTCCAAGTTCATGATATATGAGA-CATCCGTGCTTG
1 TTGAGTGGTCCAAGTTCATAATAGATGAGACCATCCAAGCTTG
* * *
81167225 TTGAGTGGTCCAAGTTCATAATGGATGTGACCATTCAAGCTTG
1 TTGAGTGGTCCAAGTTCATAATAGATGAGACCATCCAAGCTTG
*
81167268 TTGAGTGGTCCGAGTTC
1 TTGAGTGGTCCAAGTTC
81167285 GATATGGATG
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
TTGAGTGGTCCAAGTTCATAATAGATGAGACCATCCAAGCTTG
Found at i:81167367 original size:51 final size:51
Alignment explanation
Indices: 81167262--81167360 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 51
81167252 TGACCATTCA
* * * *
81167262 AGCTTGTTGAGTGGTCCGAGTTCGATATGGATGCGATATATGTAATATCCT
1 AGCTCGTTGAGAGGTCCGAGTTCGATATGGATGCGATACATGTAATAACCT
* * *
81167313 AGCTCGTTGAGAGGTCCGAGTTC-ATTATGGATGTGTTACATGTTATAA
1 AGCTCGTTGAGAGGTCCGAGTTCGA-TATGGATGCGATACATGTAATAA
81167361 GGTAGCTTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 1 0.03
51 39 0.98
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.35
Consensus pattern (51 bp):
AGCTCGTTGAGAGGTCCGAGTTCGATATGGATGCGATACATGTAATAACCT
Found at i:81167602 original size:2 final size:2
Alignment explanation
Indices: 81167595--81167629 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
81167585 TATATTCATG
81167595 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81167630 GAATACTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81183451 original size:5 final size:5
Alignment explanation
Indices: 81183441--81183465 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81183431 TATTGGGGTT
81183441 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
81183466 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:81183533 original size:46 final size:50
Alignment explanation
Indices: 81183461--81183565 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 50
81183451 GACAGGACAG
* * *
81183461 GACAGAAATGAGCCATGTAAGTCCATA-T-CA-AT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACATATATATATGGCATTGGA
*
81183507 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACATATATATATGGCATTGGA
81183557 GACAGGAAT
1 GACAGGAAT
81183566 AATTCATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
46 25 0.49
47 1 0.02
48 1 0.02
49 2 0.04
50 22 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (50 bp):
GACAGGAATGAGCCATGTAAGCCCATATTACATATATATATGGCATTGGA
Found at i:81206350 original size:24 final size:24
Alignment explanation
Indices: 81206321--81206368 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
81206311 TGCAACATCA
81206321 ATTATTATAATTTATTGCACTTAT
1 ATTATTATAATTTATTGCACTTAT
81206345 ATTATTATAATTTATTGCACTTAT
1 ATTATTATAATTTATTGCACTTAT
81206369 CATTTAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.54
Consensus pattern (24 bp):
ATTATTATAATTTATTGCACTTAT
Found at i:81207518 original size:21 final size:21
Alignment explanation
Indices: 81207493--81207538 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
81207483 GCCGGAATTA
81207493 TCAAAAGAAAAAGAAGAAAAT
1 TCAAAAGAAAAAGAAGAAAAT
81207514 TCAAAAGAAAAAGAAGAAAAT
1 TCAAAAGAAAAAGAAGAAAAT
81207535 TCAA
1 TCAA
81207539 GCTTAGGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.70, C:0.07, G:0.13, T:0.11
Consensus pattern (21 bp):
TCAAAAGAAAAAGAAGAAAAT
Found at i:81209463 original size:48 final size:49
Alignment explanation
Indices: 81209362--81209489 Score: 160
Period size: 48 Copynumber: 2.7 Consensus size: 49
81209352 TTTGTGTGCT
* *
81209362 AGTGTAAGA-CATGTCTGGGACAT-GTATCGG--C-TACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATACGAGAGGTGTC
*
81209406 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATA-TAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATACGAGAGGTGTC
* * *
81209454 AGTGTAAGACCATGTATGGGGCATGGCATCAGCACA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACA
81209490 GACATGTGAG
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
44 9 0.12
45 14 0.19
46 6 0.08
48 42 0.58
49 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATACGAGAGGTGTC
Found at i:81212037 original size:27 final size:28
Alignment explanation
Indices: 81211980--81212049 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
81211970 AAACTTGTAC
*
81211980 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
81212008 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
81212035 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81212050 GACTGACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:81212060 original size:27 final size:26
Alignment explanation
Indices: 81211980--81212061 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 26
81211970 AAACTTGTAC
* *
81211980 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCG-GATTGAT-ATAT
81212008 AGCACTAAGTGTGC-GAGTTGATTATAT
1 AGCACTAAGTGTGCGGA-TTGA-TATAT
*
81212035 AGCACTAAGTGTGCGGACTGACTATAT
1 AGCACTAAGTGTGCGGATTGA-TATAT
81212062 GCTTTTGAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
26 1 0.02
27 29 0.62
28 17 0.36
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGGATTGATATAT
Found at i:81213573 original size:42 final size:42
Alignment explanation
Indices: 81213466--81213553 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
81213456 GGCAGACATG
81213466 TGGGAGTGTGTCTAGGCCGTGTGTGACACATGGTCAGCCCCA
1 TGGGAGTGTGTCTAGGCCGTGTGTGACACATGGTCAGCCCCA
81213508 TGGGAGTGTGTCTAGGCCGTGTGTGACACATGGTCAGCCCCA
1 TGGGAGTGTGTCTAGGCCGTGTGTGACACATGGTCAGCCCCA
81213550 TGGG
1 TGGG
81213554 CATGTTGTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.16, C:0.23, G:0.38, T:0.24
Consensus pattern (42 bp):
TGGGAGTGTGTCTAGGCCGTGTGTGACACATGGTCAGCCCCA
Found at i:81217778 original size:28 final size:28
Alignment explanation
Indices: 81217746--81217826 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 28
81217736 TGTGAAATAT
81217746 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
* ***
81217774 GAATG-GCTA-G----TGT-G-AAATAT
1 GAATGAGATATGTATATGTGGTAAAGCC
81217794 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
81217822 GAATG
1 GAATG
81217827 GCTAGTGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
20 8 0.22
21 4 0.11
22 4 0.11
26 4 0.11
27 4 0.11
28 13 0.35
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (28 bp):
GAATGAGATATGTATATGTGGTAAAGCC
Found at i:81217850 original size:48 final size:48
Alignment explanation
Indices: 81217666--81217842 Score: 327
Period size: 48 Copynumber: 3.7 Consensus size: 48
81217656 TATATATGTG
* *
81217666 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
*
81217714 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
81217762 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
81217810 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
81217843 TAGGAGATGT
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 125 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
Found at i:81218045 original size:37 final size:37
Alignment explanation
Indices: 81217995--81218093 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
81217985 ATATATTCCG
81217995 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
* *
81218032 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
*
81218069 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
81218094 GGACTATTCG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
Found at i:81223812 original size:48 final size:48
Alignment explanation
Indices: 81223756--81223942 Score: 173
Period size: 48 Copynumber: 3.9 Consensus size: 48
81223746 TACGAGATGT
* * *
81223756 GTCAGTGTAAGACCATGTTTAGGACATGGCATCAACATGTATAGAGGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGTATAGAGGA
* * ** * *
81223804 GTCAGTGTAAGACCATGACTGGGACATAGCATCGGCATGGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGTATA-GAG-GA
* * * *
81223854 G-CTAGTGTAAGACCATGTCTGGGACATGGCATCCACTTG-ATGGATGA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCAACATGTATAGAGGA
* * * *
81223901 GCCAGTGTAGGACCATGTTTGGGACATGGCATCAGCAT-TATA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGTATA
81223943 CCCTATGTTT
Statistics
Matches: 111, Mismatches: 23, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
47 35 0.32
48 38 0.34
49 5 0.05
50 33 0.30
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGTATAGAGGA
Found at i:81223933 original size:97 final size:98
Alignment explanation
Indices: 81223759--81223938 Score: 236
Period size: 97 Copynumber: 1.8 Consensus size: 98
81223749 GAGATGTGTC
* * *
81223759 AGTGTAAGACCATGTTTAGGACATGGCATCAACATGTATAGAGGTGTCAGTGTAAGACCATGACT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACATGTATAGAGGAGCCAGTGTAAGACCATGACT
*
81223824 GGGACATAGCATCGGCATGGATATGTGAGAGCT
66 GGGACATAGCATCAGCATGGATATGTGAGAGCT
* * * * * * **
81223857 AGTGTAAGACCATGTCTGGGACATGGCATCCACTTG-ATGGATGAGCCAGTGTAGGACCATGTTT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACATGTATAGAGGAGCCAGTGTAAGACCATGACT
*
81223921 GGGACATGGCATCAGCAT
66 GGGACATAGCATCAGCAT
81223939 TATACCCTAT
Statistics
Matches: 69, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
97 37 0.54
98 32 0.46
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (98 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCAACATGTATAGAGGAGCCAGTGTAAGACCATGACT
GGGACATAGCATCAGCATGGATATGTGAGAGCT
Found at i:81225425 original size:44 final size:43
Alignment explanation
Indices: 81225345--81225448 Score: 111
Period size: 44 Copynumber: 2.4 Consensus size: 43
81225335 ATGGCTGAAT
* * * * *
81225345 AAATGGCACTAAGTGTGTGATACTAATATAAGTTCAGTTTAGTG
1 AAATGACACTAAGTGTGGGATAATAATATAAGTTCAG-CTAATG
* *
81225389 AAATGACACTAAGTGTGGGATAATATTAT-AGCTTCAGCTAATT
1 AAATGACACTAAGTGTGGGATAATAATATAAG-TTCAGCTAATG
*
81225432 AATTGACACTAAGTGTG
1 AAATGACACTAAGTGTG
81225449 CGAGTTTAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
43 21 0.41
44 30 0.59
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (43 bp):
AAATGACACTAAGTGTGGGATAATAATATAAGTTCAGCTAATG
Found at i:81236571 original size:15 final size:15
Alignment explanation
Indices: 81236541--81236569 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81236531 ACTATTAGTA
81236541 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
81236556 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
81236570 TACCATACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:81243342 original size:28 final size:28
Alignment explanation
Indices: 81243273--81243373 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
81243263 GACAAGATTG
* * * *
81243273 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
81243303 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81243331 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
81243360 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81243374 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81243367 original size:29 final size:28
Alignment explanation
Indices: 81243302--81243373 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
81243292 AAAATTGTAC
*
81243302 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
81243330 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
81243359 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81243374 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:81251425 original size:28 final size:28
Alignment explanation
Indices: 81251356--81251455 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
81251346 GACAAGATTG
* * * *
81251356 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
81251386 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81251414 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
81251443 GCACTAAGTGTGC
1 GCACTAAGTGTGC
81251456 ATGTAACACC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 19 0.30
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81252219 original size:47 final size:47
Alignment explanation
Indices: 81252156--81252303 Score: 242
Period size: 47 Copynumber: 3.1 Consensus size: 47
81252146 CCCTTCGGGA
* * *
81252156 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81252203 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81252250 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81252299 CTTAT
1 CTTAT
81252304 GTAACACCCC
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 51 0.54
49 43 0.46
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81253820 original size:80 final size:80
Alignment explanation
Indices: 81253736--81253884 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
81253726 TATGGTAACC
* * * *
81253736 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
81253800 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
81253816 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
81253881 CCGG
66 CCGG
81253885 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:81253826 original size:40 final size:38
Alignment explanation
Indices: 81253777--81253884 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
81253767 ATCACGATTT
*
81253777 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
81253817 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
81253857 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
81253885 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:81261994 original size:39 final size:39
Alignment explanation
Indices: 81261888--81262037 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
81261878 ATCACGATTT
*
81261888 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
81261928 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCCTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTA
* * * ** *
81261967 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
81262007 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
81262038 TCATTCAATT
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
38 3 0.03
39 29 0.32
40 58 0.64
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:81275013 original size:40 final size:40
Alignment explanation
Indices: 81274968--81275134 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
81274958 CGGAATATAA
81274968 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
81275008 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
81275047 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81275087 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
81275127 CCGGATAT
1 CCGGATAT
81275135 CATTCAATTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.33
40 66 0.65
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81286058 original size:29 final size:29
Alignment explanation
Indices: 81286026--81286161 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
81286016 ATACCCTCCG
** * *
81286026 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
81286055 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
81286084 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
81286113 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
81286142 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
81286162 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:81286153 original size:58 final size:58
Alignment explanation
Indices: 81285972--81286160 Score: 177
Period size: 58 Copynumber: 3.3 Consensus size: 58
81285962 TACTCGATTT
* * * *** *
81285972 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
81286030 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
81286088 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
81286146 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
81286161 AATCTCGTCA
Statistics
Matches: 105, Mismatches: 23, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:81287356 original size:19 final size:18
Alignment explanation
Indices: 81287320--81287377 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
81287310 AGAATGAACA
*
81287320 CTTT-TTTTT-TTCTTTT
1 CTTTGTTTTTCTTCATTT
81287336 CTTTGTTTTTCTTCATATT
1 CTTTGTTTTTCTTCAT-TT
* *
81287355 CTCTTTTTTTTTTTCATTT
1 CT-TTGTTTTTCTTCATTT
81287374 CTTT
1 CTTT
81287378 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 4 0.11
17 5 0.14
18 6 0.17
19 8 0.23
20 12 0.34
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTGTTTTTCTTCATTT
Found at i:81287935 original size:40 final size:40
Alignment explanation
Indices: 81287880--81288060 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
81287870 TATTCGGATG
** * *
81287880 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
*
81287920 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
*
81287960 ATATCTGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
* ** *
81288000 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
* *
81288040 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
81288061 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
39 14 0.11
40 109 0.87
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
Found at i:81288013 original size:80 final size:80
Alignment explanation
Indices: 81287880--81288060 Score: 256
Period size: 80 Copynumber: 2.3 Consensus size: 80
81287870 TATTCGGATG
* ** * *
81287880 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCTGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
81287945 TTCATGCTAGTGGCT
66 TTCATGCGAGTGGCT
*
81287960 ATATCTGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCTGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCA
** *
81288025 TTTGTGCGAGTTGCT
66 TTCATGCGAGTGGCT
*
81288040 ATATCT-GGCTAAATCCCGAAG
1 ATATCTGGGCTAAGTCCCGAAG
81288061 ATACTTGGGT
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 14 0.16
80 76 0.84
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCTGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCATGCGAGTGGCT
Found at i:81289934 original size:27 final size:26
Alignment explanation
Indices: 81289900--81290010 Score: 114
Period size: 27 Copynumber: 4.1 Consensus size: 26
81289890 GCATTGCTGT
* *
81289900 CAGAACAGATAATGTGACAGAGTCAC
1 CAGAACAGATAATGTGGCAGAGCCAC
* *
81289926 CAGATACAGATAAACGTGGTAGAGCCAC
1 CAGA-ACAGAT-AATGTGGCAGAGCCAC
*
81289954 CCGAACAGATATATGTGGCAGAGCCAC
1 CAGAACAGATA-ATGTGGCAGAGCCAC
* * *
81289981 CAGATCAGATAATTGTGGTATAGCCAC
1 CAGAACAGATAA-TGTGGCAGAGCCAC
81290008 CAG
1 CAG
81290011 GATGCTTCCT
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.09
27 49 0.70
28 15 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CAGAACAGATAATGTGGCAGAGCCAC
Found at i:81289992 original size:54 final size:54
Alignment explanation
Indices: 81289902--81290008 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
81289892 ATTGCTGTCA
*
81289902 GAACAGATAATGTGACAGAGTCACCAGATACAGATAAACGTGGTAGAGCCACCC
1 GAACAGATAATGTGACAGAGCCACCAGATACAGATAAACGTGGTAGAGCCACCC
* ** *
81289956 GAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGTATAGCCACC
1 GAACAGATA-ATGTGACAGAGCCACCAGATACAGATAAACGTGGTAGAGCCACC
81290009 AGGATGCTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
GAACAGATAATGTGACAGAGCCACCAGATACAGATAAACGTGGTAGAGCCACCC
Found at i:81290441 original size:8 final size:8
Alignment explanation
Indices: 81290425--81290456 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
81290415 CTCAAAATAC
81290425 CGGCTTTT
1 CGGCTTTT
*
81290433 CGGCATTT
1 CGGCTTTT
81290441 CGGCTTTT
1 CGGCTTTT
81290449 CGGCTTTT
1 CGGCTTTT
81290457 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:81293389 original size:24 final size:24
Alignment explanation
Indices: 81293362--81293430 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
81293352 GTTCTCGCTA
81293362 ATCAGCTCCTAAATCCTCTCCCTT
1 ATCAGCTCCTAAATCCTCTCCCTT
81293386 ATCAGCTCCTAAATCCTCTCCCTT
1 ATCAGCTCCTAAATCCTCTCCCTT
* *
81293410 ATCAGCTCCCAAATCTTCTCC
1 ATCAGCTCCTAAATCCTCTCC
81293431 TGACAGCCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.22, C:0.42, G:0.04, T:0.32
Consensus pattern (24 bp):
ATCAGCTCCTAAATCCTCTCCCTT
Found at i:81298699 original size:15 final size:14
Alignment explanation
Indices: 81298679--81298712 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
81298669 CCACCTTCTA
81298679 AAAATCTAAATTTTG
1 AAAATC-AAATTTTG
*
81298694 AAAATCGAATTTTG
1 AAAATCAAATTTTG
81298708 AAAAT
1 AAAAT
81298713 AGAGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (14 bp):
AAAATCAAATTTTG
Found at i:81298720 original size:14 final size:14
Alignment explanation
Indices: 81298687--81298720 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
81298677 TAAAAATCTA
*
81298687 AATTTTGAAAATCG
1 AATTTTGAAAATAG
81298701 AATTTTGAAAATAG
1 AATTTTGAAAATAG
*
81298715 AGTTTT
1 AATTTT
81298721 TTTTTGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (14 bp):
AATTTTGAAAATAG
Found at i:81299813 original size:27 final size:27
Alignment explanation
Indices: 81299721--81299832 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
81299711 AGCATTGCTT
** *
81299721 CCAGAACAGATAA-TGTGATAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
** *
81299747 CCAGATACAGATAAGCGTGGTAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
81299775 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * *
81299802 CCATATCTGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
81299829 CCAG
1 CCAG
81299833 GATGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.08
27 48 0.68
28 17 0.24
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:81299814 original size:54 final size:54
Alignment explanation
Indices: 81299721--81299832 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 54
81299711 AGCATTGCTT
* * *
81299721 CCAGAACAGATAATGTGATAGAGTCACCAGATACAGATAAGCGTGGTAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAAGCGTGGCAGAGCCA
* * * ** *
81299775 CCAGAACAGATATATGTGGCAGAGCCACCATAT-CTGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAAGCGTGGCAGAGCCA
81299829 CCAG
1 CCAG
81299833 GATGCTTCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
54 32 0.67
55 16 0.33
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAAGCGTGGCAGAGCCA
Found at i:81320330 original size:17 final size:17
Alignment explanation
Indices: 81320308--81320348 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
81320298 TTCTAACGCC
81320308 AGCAATTTTACTAAACA
1 AGCAATTTTACTAAACA
81320325 AGCAATTTTACTAAACA
1 AGCAATTTTACTAAACA
*
81320342 AGTAATT
1 AGCAATT
81320349 CACACGAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (17 bp):
AGCAATTTTACTAAACA
Found at i:81324256 original size:19 final size:19
Alignment explanation
Indices: 81324234--81324271 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
81324224 AAACACAGTT
81324234 TCATGCTTGAATCAAGCAA
1 TCATGCTTGAATCAAGCAA
81324253 TCATGCTTGAATCAAGCAA
1 TCATGCTTGAATCAAGCAA
81324272 CCAAACCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (19 bp):
TCATGCTTGAATCAAGCAA
Found at i:81326765 original size:15 final size:15
Alignment explanation
Indices: 81326742--81326776 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
81326732 TTTGGATTAC
* *
81326742 CATTAAGACCATGAT
1 CATTCAGACCAGGAT
81326757 CATTCAGACCAGGAT
1 CATTCAGACCAGGAT
81326772 CATTC
1 CATTC
81326777 CCTTCTCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (15 bp):
CATTCAGACCAGGAT
Found at i:81329352 original size:40 final size:40
Alignment explanation
Indices: 81329284--81329434 Score: 187
Period size: 40 Copynumber: 3.8 Consensus size: 40
81329274 TTTTGTGTTA
* * ** *
81329284 AGTGACTATATCCGGACTAAGATTCGAAGGCATTTATGCA
1 AGTGACTATATCCGGGCTAAAACCCGAAGGCATTTATGCT
* * *
81329324 AGTTACTATATCCGGGCCAAAACCCGAAGGCATTTGTGCT
1 AGTGACTATATCCGGGCTAAAACCCGAAGGCATTTATGCT
* *
81329364 AGCGACTATATCCGGGCTAAATCCCGAAGGCATTTATGCT
1 AGTGACTATATCCGGGCTAAAACCCGAAGGCATTTATGCT
*
81329404 AGTGA-TCATATCCGGGCTAAGACCCGAAGGC
1 AGTGACT-ATATCCGGGCTAAAACCCGAAGGC
81329435 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 93 0.99
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (40 bp):
AGTGACTATATCCGGGCTAAAACCCGAAGGCATTTATGCT
Found at i:81329393 original size:80 final size:79
Alignment explanation
Indices: 81329267--81329471 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 79
81329257 GGCTAAGTCT
* * * *
81329267 CGAAGGCTTTTGTGTTAAGTGACTATATCCGGACTAAGAT-TCGAAGGCATTTATGCAAGTTA-C
1 CGAAGGC-TTTGTGCT-AGTGACTATATCCGGGCTAA-ATCCCGAAGGCATTTATGCAAGTGATC
81329330 TATATCCGGGCCAAAACC
63 -ATATCCGGGCCAAAACC
* *
81329348 CGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAATCCCGAAGGCATTTATGCTAGTGATCAT
1 CGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGGCATTTATGCAAGTGATCAT
* *
81329413 ATCCGGGCTAAGACC
65 ATCCGGGCCAAAACC
* * ** *
81329428 CGAAGGCCTTGTGCGAGTGGTTATATCC-GGTTAAATCCCGAAGG
1 CGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGG
81329472 TACGTGATTC
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 15 0.14
79 18 0.17
80 59 0.55
81 15 0.14
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (79 bp):
CGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGGCATTTATGCAAGTGATCATA
TCCGGGCCAAAACC
Found at i:81332016 original size:2 final size:2
Alignment explanation
Indices: 81332009--81332045 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
81331999 ACACATATGC
81332009 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81332046 CAAAATCAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81334561 original size:42 final size:42
Alignment explanation
Indices: 81334454--81334572 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 42
81334444 CGTACCAATA
* **
81334454 CCATATCCCAGATATGGTCTTAAATGTAA-TCTCATATCGATG
1 CCATATCCCAGATATGGTCTTACA-CAAAGTCTCATATCGATG
* *
81334496 CCAATAGCCCAGCTATGGTCTTACACAAAGTCTCATATCGATG
1 CC-ATATCCCAGATATGGTCTTACACAAAGTCTCATATCGATG
*
81334539 CCATATCCCAGATATGGTCTTACACATAGTCTCA
1 CCATATCCCAGATATGGTCTTACACAAAGTCTCA
81334573 ATAACCCTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.49
43 34 0.51
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACAAAGTCTCATATCGATG
Found at i:81334905 original size:15 final size:16
Alignment explanation
Indices: 81334876--81334907 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81334866 AATTCAGCCC
81334876 AAAAATTACATTTTTG
1 AAAAATTACATTTTTG
81334892 AAAAATTACATTTTTG
1 AAAAATTACATTTTTG
81334908 CCCCCTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
AAAAATTACATTTTTG
Found at i:81337439 original size:16 final size:16
Alignment explanation
Indices: 81337418--81337460 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
81337408 TTATTTATCG
81337418 AGCTTTGTGCCTAGCA
1 AGCTTTGTGCCTAGCA
81337434 AGCTTTGTGCCTAGCA
1 AGCTTTGTGCCTAGCA
81337450 AGCTTTGTGCC
1 AGCTTTGTGCC
81337461 AGTGTGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.33
Consensus pattern (16 bp):
AGCTTTGTGCCTAGCA
Found at i:81337498 original size:40 final size:41
Alignment explanation
Indices: 81337437--81337513 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 41
81337427 CCTAGCAAGC
* * *
81337437 TTTGTGCCTAGCAAGCTTTGTGCCAGTG-TGTTTATTGGGA
1 TTTGTGCCTAGCAAACCTTGTGCCAGTGCTGTCTATTGGGA
* *
81337477 TTTGTGCCTAGTAAACCTTGTGCTAGTGCTGTCTATT
1 TTTGTGCCTAGCAAACCTTGTGCCAGTGCTGTCTATT
81337514 AGGCCTTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 24 0.77
41 7 0.23
ACGTcount: A:0.16, C:0.17, G:0.26, T:0.42
Consensus pattern (41 bp):
TTTGTGCCTAGCAAACCTTGTGCCAGTGCTGTCTATTGGGA
Found at i:81337834 original size:110 final size:110
Alignment explanation
Indices: 81337536--81337852 Score: 356
Period size: 107 Copynumber: 2.9 Consensus size: 110
81337526 TGATGATCAT
* *
81337536 TTAGTAGGTACTATGTACCGGTGATATAGA-CAGTAACGATGGCTTAAGATCC-AGCATATGTTG
1 TTAGTAGGTACTATGTACCGGTGATACAGATC-GTAACGATGGCTTGAGATCCTA-CATATGTTG
* *
81337599 CGGATTCTCTGCAGCTTGTATGAGTAGTATCATGAGCCAAGGATTAA
64 CGGATTCTCTGCAGCTTGTGTGAGTAGCATCATGAGCCAAGGATTAA
* * * * *
81337646 TTAGTAGGTAC-A--AACCGGTGATACAGATCATAATGATGGCTTGACATCCTACATATGTTGTG
1 TTAGTAGGTACTATGTACCGGTGATACAGATCGTAACGATGGCTTGAGATCCTACATATGTTGCG
* ****
81337708 GATTCTCTGCAACTTGTGTGAGTAGCATCATGAGTGGGGGATTAA
66 GATTCTCTGCAGCTTGTGTGAGTAGCATCATGAGCCAAGGATTAA
* * * * *
81337753 TTAGTAGTTACTATGTATCGGAGATACAGATCGTAACGATTGCTTGAGATCCTACATATGTTGCA
1 TTAGTAGGTACTATGTACCGGTGATACAGATCGTAACGATGGCTTGAGATCCTACATATGTTGCG
* ** * * *
81337818 GATTCTTTATAGCTTGTGTCAGCAGCATCGTGAGC
66 GATTCTCTGCAGCTTGTGTGAGTAGCATCATGAGC
81337853 TGGTCAAAGT
Statistics
Matches: 170, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
107 87 0.51
108 3 0.02
109 1 0.01
110 79 0.46
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (110 bp):
TTAGTAGGTACTATGTACCGGTGATACAGATCGTAACGATGGCTTGAGATCCTACATATGTTGCG
GATTCTCTGCAGCTTGTGTGAGTAGCATCATGAGCCAAGGATTAA
Found at i:81340767 original size:27 final size:26
Alignment explanation
Indices: 81340705--81340817 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
81340695 AGCATGGCTG
* * *
81340705 CCAGAATAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
81340731 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
81340759 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
81340786 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
81340814 CCAG
1 CCAG
81340818 GACGCTACCT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 5 0.07
27 38 0.51
28 32 0.43
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:81340813 original size:28 final size:28
Alignment explanation
Indices: 81340718--81340817 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
81340708 GAATAGATAA
* * *
81340718 TGTGACAGAGTCACTAGATACAGATAA-T
1 TGTGGCAGAGCCACCAGAT-CAGATAATT
* * *
81340746 CGTGGCAGAGCCACCAGAACAGAT-ATA
1 TGTGGCAGAGCCACCAGATCAGATAATT
81340773 TGTGGCAGAGCCACCAGATCAGATAATT
1 TGTGGCAGAGCCACCAGATCAGATAATT
*
81340801 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
81340818 GACGCTACCT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.02
27 27 0.45
28 32 0.53
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (28 bp):
TGTGGCAGAGCCACCAGATCAGATAATT
Found at i:81340813 original size:55 final size:54
Alignment explanation
Indices: 81340705--81340817 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
81340695 AGCATGGCTG
* * *
81340705 CCAGAATAGATAATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
81340759 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAA-TCGTGGCAGAGCCA
81340814 CCAG
1 CCAG
81340818 GACGCTACCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 18 0.35
55 33 0.65
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:81342028 original size:15 final size:15
Alignment explanation
Indices: 81342010--81342044 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
81342000 TAATAGATAG
81342010 AAGGTGGTATAGAGT
1 AAGGTGGTATAGAGT
81342025 AAGGTGGTATAGAGT
1 AAGGTGGTATAGAGT
81342040 AAGGT
1 AAGGT
81342045 TGGTTCGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.40, T:0.26
Consensus pattern (15 bp):
AAGGTGGTATAGAGT
Found at i:81342340 original size:10 final size:10
Alignment explanation
Indices: 81342298--81342340 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
81342288 AAAAATGACC
*
81342298 AAAATTAATC
1 AAAATTAATT
81342308 AAAATTAATTAT
1 AAAATTAA-T-T
81342320 AAAATTAATT
1 AAAATTAATT
*
81342330 AAAATTCATT
1 AAAATTAATT
81342340 A
1 A
81342341 TATTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 19 0.66
11 2 0.07
12 8 0.28
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATTAATT
Found at i:81342351 original size:22 final size:22
Alignment explanation
Indices: 81342298--81342342 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
81342288 AAAAATGACC
*
81342298 AAAATTAATCAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
*
81342320 AAAATTAATTAAAATTCATTAT
1 AAAATTAATTAAAATTAATTAT
81342342 A
1 A
81342343 TTAATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAATTAATTAAAATTAATTAT
Found at i:81345911 original size:27 final size:26
Alignment explanation
Indices: 81345876--81345988 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
81345866 AGCATGGCTG
** * *
81345876 CCAGAACAGATAATGTAACAGAGTCA
1 CCAGAACAGATAATGTGGCAAAGCCA
81345902 CCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGA-ACAGATAAT-GTGGCAAAGCCA
81345930 CCAGAACAGATATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGGCAAAGCCA
* *
81345957 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAAAGCCA
81345985 CCAG
1 CCAG
81345989 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.08
27 39 0.51
28 31 0.41
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAAAGCCA
Found at i:81345984 original size:55 final size:54
Alignment explanation
Indices: 81345876--81345988 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
81345866 AGCATGGCTG
* *
81345876 CCAGAACAGATAATGTAACAGAGTCACCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGAACAGATAATGTAACAAAGCCACCAGATACAGATAATCGTGGCAAAGCCA
** * *
81345930 CCAGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTAACAAAGCCACCAGATACAGATAA-TCGTGGCAAAGCCA
81345985 CCAG
1 CCAG
81345989 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 19 0.37
55 32 0.63
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTAACAAAGCCACCAGATACAGATAATCGTGGCAAAGCCA
Found at i:81351302 original size:40 final size:39
Alignment explanation
Indices: 81351245--81351448 Score: 203
Period size: 40 Copynumber: 5.1 Consensus size: 39
81351235 TGAATGATAC
* * * **
81351245 CCGGGCTAAGTCTCGAAGGCATTTATGCTTGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
* *
81351285 TCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
81351325 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * * *
81351365 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
81351405 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
81351445 CCGG
1 CCGG
81351449 TTGAATCCCA
Statistics
Matches: 141, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 136 0.96
41 2 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:81356790 original size:28 final size:26
Alignment explanation
Indices: 81356740--81356852 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
81356730 AGCATGGCTG
* *
81356740 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
81356766 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
81356794 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
81356821 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
81356849 CCAG
1 CCAG
81356853 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.08
27 37 0.49
28 33 0.43
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:81356823 original size:55 final size:54
Alignment explanation
Indices: 81356740--81356852 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
81356730 AGCATGGCTG
*
81356740 CCAGAACAGATAATGTGACAGAGTCACCAGATACAAATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAAATAATTCGTGGCAGAGCCA
* * * *
81356794 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAAATAATTCGTGGCAGAGCCA
81356849 CCAG
1 CCAG
81356853 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 18 0.35
55 34 0.65
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAAATAATTCGTGGCAGAGCCA
Found at i:81358066 original size:15 final size:15
Alignment explanation
Indices: 81358046--81358080 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
81358036 TAATAGATGG
81358046 AAGGTGGTATAGAGT
1 AAGGTGGTATAGAGT
81358061 AAGGTGGTATAGAGT
1 AAGGTGGTATAGAGT
81358076 AAGGT
1 AAGGT
81358081 TGGTTCGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.40, T:0.26
Consensus pattern (15 bp):
AAGGTGGTATAGAGT
Found at i:81358347 original size:10 final size:10
Alignment explanation
Indices: 81358334--81358376 Score: 59
Period size: 10 Copynumber: 4.1 Consensus size: 10
81358324 AAAAATGACC
81358334 AAAATTAATT
1 AAAATTAATT
81358344 AAAATTAATTAT
1 AAAATTAA-T-T
81358356 AAAATTAATT
1 AAAATTAATT
*
81358366 AAAATTCATT
1 AAAATTAATT
81358376 A
1 A
81358377 TATTAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 19 0.63
11 2 0.07
12 9 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAATTAATT
Found at i:81358387 original size:22 final size:22
Alignment explanation
Indices: 81358334--81358378 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
81358324 AAAAATGACC
81358334 AAAATTAATTAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
*
81358356 AAAATTAATTAAAATTCATTAT
1 AAAATTAATTAAAATTAATTAT
81358378 A
1 A
81358379 TTAATAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATTAATTAAAATTAATTAT
Found at i:81360400 original size:33 final size:33
Alignment explanation
Indices: 81360358--81360424 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
81360348 CTTAAACTTA
81360358 CCATTCCTTAACATTAAATCATTCAATCATACT
1 CCATTCCTTAACATTAAATCATTCAATCATACT
81360391 CCATTCCTTAACATTAAATCATTCAATCATACT
1 CCATTCCTTAACATTAAATCATTCAATCATACT
81360424 C
1 C
81360425 ATTATATCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (33 bp):
CCATTCCTTAACATTAAATCATTCAATCATACT
Found at i:81360751 original size:36 final size:36
Alignment explanation
Indices: 81360704--81360775 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
81360694 GGTGAGTTAA
81360704 TTTTAGCAATTTCATGCTTAATTGTGAAAAATGACT
1 TTTTAGCAATTTCATGCTTAATTGTGAAAAATGACT
81360740 TTTTAGCAATTTCATGCTTAATTGTGAAAAATGACT
1 TTTTAGCAATTTCATGCTTAATTGTGAAAAATGACT
81360776 AAATCCCACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (36 bp):
TTTTAGCAATTTCATGCTTAATTGTGAAAAATGACT
Found at i:81361864 original size:46 final size:46
Alignment explanation
Indices: 81361812--81361982 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 46
81361802 TGATATGTGT
*
81361812 GCTAGTGTAAGACATGTTTGGGACATGCATTGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGAGA
* ** * * * *
81361858 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGAT-GA-GA
* * * * * *
81361906 TCCAGTATAAGACATATCTGGGACATGCATTGGTATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGAGA
* *
81361952 GATAGTGTAAGACGTGTCTGGGACATGCATT
1 GCTAGTGTAAGACATGTCTGGGACATGCATT
81361983 AGCCTCGAGA
Statistics
Matches: 96, Mismatches: 27, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
46 62 0.65
47 2 0.02
48 32 0.33
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGAGA
Found at i:81362024 original size:48 final size:48
Alignment explanation
Indices: 81361812--81362026 Score: 177
Period size: 46 Copynumber: 4.6 Consensus size: 48
81361802 TGATATGTGT
* * * * * * *
81361812 GCTAGTGTAAGACATGTTTGGGACATGCATTGGCATTGAGAT-GA-GA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGATATACAA
*
81361858 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGATATACAA
* * * * * * ** * ** *
81361906 TCCAGTATAAGACATATCTGGGACATGCATTGGTATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGATATACAA
* * *
81361952 GATAGTGTAAGACGTGTCTGGGACATGCATTAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGATATACAA
* *
81362000 GCTAGTGTAACACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTAGGACATG
81362027 GCGTCGGCTT
Statistics
Matches: 127, Mismatches: 38, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
46 68 0.54
47 3 0.02
48 56 0.44
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGATATACAA
Found at i:81362024 original size:94 final size:94
Alignment explanation
Indices: 81361812--81362026 Score: 304
Period size: 94 Copynumber: 2.3 Consensus size: 94
81361802 TGATATGTGT
* * *
81361812 GCTAGTGTAAGACATGTTTGGGACATGCATTGGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
81361877 AGGACATGCATCAGCCTCGAGATATACAA
66 AGGACATGCATCAGCCTCGAGATATACAA
* * * * * *
81361906 TCCAGTATAAGACATATCTGGGACATGCATTGGTATTGAGACGAGAGATAGTGTAAGACGTGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
* *
81361971 GGGACATGCATTAGCCTCGAGATATACAA
66 AGGACATGCATCAGCCTCGAGATATACAA
* * *
81362000 GCTAGTGTAACACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
81362027 GCGTCGGCTT
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 103 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
AGGACATGCATCAGCCTCGAGATATACAA
Done.