Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 262 of 438
Found at i:81362106 original size:49 final size:49
Alignment explanation
Indices: 81362045--81362172 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
81362035 TTATTGTGCA
* *
81362045 TCAGTGTAAGACCTGTCTGGGACATGGCATCAACACT-GATATATGAGAG
1 TCAGTGTAAGACCTGTCTGGGACATGGCATCAAC-CTCGATATATAAAAG
* *
81362094 TCAGTGTAAGACCTGTCTGGGACACGGCATCAGCCTCGATATATAAAAG
1 TCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATATATAAAAG
* * * *
81362143 TTAGTGTAAAACCTGTTTGGAACATGGCAT
1 TCAGTGTAAGACCTGTCTGGGACATGGCAT
81362173 TGACTTTGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 2 0.03
49 67 0.97
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (49 bp):
TCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATATATAAAAG
Found at i:81371270 original size:48 final size:47
Alignment explanation
Indices: 81371165--81371376 Score: 218
Period size: 46 Copynumber: 4.5 Consensus size: 47
81371155 TATGTGTGCA
*
81371165 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTAT--AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGA-TATAAAGCT
* *
81371211 AGTGTAAGACATGTTTGGGACATGCATCAGTC-TCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCGAGATATA-AAGCT
* ** ** *
81371259 AGTGTAAGACATATCTGGGACATGCATCGGCATTAAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATATAAAGCT
* *
81371305 AGTGTAAGACGTGTCTAGGACATGCATCAGGC-TCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCGAGATATA-AAGCT
* * *
81371353 AGTGTAAAACCTATCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
81371377 GTGTCATCTT
Statistics
Matches: 135, Mismatches: 23, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
45 3 0.02
46 65 0.48
47 9 0.07
48 58 0.43
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATATAAAGCT
Found at i:81371314 original size:94 final size:94
Alignment explanation
Indices: 81371165--81371376 Score: 334
Period size: 94 Copynumber: 2.3 Consensus size: 94
81371155 TATGTGTGCA
* * * * * *
81371165 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTATAGCTAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATATCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTAGG
*
81371230 ACATGCATCAGTCTCGAGATATACAAGCT
66 ACATGCATCAGGCTCGAGATATACAAGCT
*
81371259 AGTGTAAGACATATCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACGTGTCTAGG
1 AGTGTAAGACATATCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTAGG
81371324 ACATGCATCAGGCTCGAGATATACAAGCT
66 ACATGCATCAGGCTCGAGATATACAAGCT
* *
81371353 AGTGTAAAACCTATCTGGGACATG
1 AGTGTAAGACATATCTGGGACATG
81371377 GTGTCATCTT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 108 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATATCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTAGG
ACATGCATCAGGCTCGAGATATACAAGCT
Found at i:81371534 original size:49 final size:48
Alignment explanation
Indices: 81371396--81371568 Score: 163
Period size: 49 Copynumber: 3.6 Consensus size: 48
81371386 TGTTGTGGGT
* * *
81371396 CAGTGTAAGACCTTTCTGGGACATGGCATCAACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATATGA-AGC
* * * * * * *
81371445 CAATGTAAGACCTGTTTAGGACACGACAT-AAGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAA-CATCGATATATG-AAGC
* * *
81371494 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATATACT--AGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATA-TGAAGC
81371541 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
81371569 GTCGGCATCT
Statistics
Matches: 100, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
47 14 0.14
48 17 0.17
49 66 0.66
50 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATATGAAGC
Found at i:81374854 original size:26 final size:26
Alignment explanation
Indices: 81374809--81374905 Score: 126
Period size: 26 Copynumber: 3.8 Consensus size: 26
81374799 TTATCACCCT
81374809 AATTTTATCCCA-G-TAAAATTTTAAC
1 AATTTTA-CCCACGATAAAATTTTAAC
*
81374834 AATTTTACCCACGCTAAAATTTTAAC
1 AATTTTACCCACGATAAAATTTTAAC
* * *
81374860 GATTTTACCCACGATAAAAATTTGAC
1 AATTTTACCCACGATAAAATTTTAAC
*
81374886 AATTTTACCCTCGATAAAAT
1 AATTTTACCCACGATAAAAT
81374906 GTCGAGGGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
24 4 0.06
25 8 0.13
26 51 0.81
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.35
Consensus pattern (26 bp):
AATTTTACCCACGATAAAATTTTAAC
Found at i:81376236 original size:48 final size:48
Alignment explanation
Indices: 81376178--81376269 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
81376168 GATTAACGAG
*
81376178 ATCCCATGTAAGACCATGTCTA-GGACATGGCATCGGCATCGATATGCT
1 ATCCCATGTAAGACCATATC-AGGGACATGGCATCGGCATCGATATGCT
* * * *
81376226 ATCCCGTGTAAGACCATATCAGGGATATGGCTTCGGCATTGATA
1 ATCCCATGTAAGACCATATCAGGGACATGGCATCGGCATCGATA
81376270 AGTGATTTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 1 0.03
48 37 0.97
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (48 bp):
ATCCCATGTAAGACCATATCAGGGACATGGCATCGGCATCGATATGCT
Found at i:81376352 original size:90 final size:89
Alignment explanation
Indices: 81376213--81376426 Score: 207
Period size: 90 Copynumber: 2.4 Consensus size: 89
81376203 CATGGCATCG
*** * * * * * * *
81376213 GCATCGATATGCTATCCCGTGTAAGACCATATCAGGGATATGGCTTCGGCATTGA-T-AAGTGAT
1 GCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGACATCGGCACTGATTCAA--GAC
81376276 TTCGAATAAAACCATATCAGGGACAT
64 TTCGAATAAAACCATATCAGGGACAT
* *
81376302 AGCATCGATATGAGGTCCCGTATAAGACCATGTCTGGGGCATGACATCGGCACTGATTCAAGACT
1 -GCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGACATCGGCACTGATTCAAGACT
* * * *
81376367 TCGTATAAGACCATATCTGGGATAT
65 TCGAATAAAACCATATCAGGGACAT
* * *
81376392 GTCATCGATGTGTGGTCCCATGTAAGACCATGTCT
1 G-CATCGATATGAGGTCCCGTGTAAGACCATGTCT
81376427 AAGACACGGC
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
89 1 0.01
90 97 0.96
91 1 0.01
92 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (89 bp):
GCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGACATCGGCACTGATTCAAGACTT
CGAATAAAACCATATCAGGGACAT
Found at i:81380047 original size:34 final size:31
Alignment explanation
Indices: 81380007--81380067 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
81379997 TAATTTATAT
81380007 TATTATTATTACTTACTTATTTACTTTTTCC
1 TATTATTATTACTTACTTATTTACTTTTTCC
81380038 TATTATTATTACTTACTTATTTACTTTTTC
1 TATTATTATTACTTACTTATTTACTTTTTC
81380068 TTTCTCTTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (31 bp):
TATTATTATTACTTACTTATTTACTTTTTCC
Found at i:81380058 original size:17 final size:17
Alignment explanation
Indices: 81380006--81380058 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
81379996 TTAATTTATA
81380006 TTATTATTATTACTTAC
1 TTATTATTATTACTTAC
*
81380023 TTA-T-TTACTT--TTTC
1 TTATTATTA-TTACTTAC
*
81380037 CTATTATTATTACTTAC
1 TTATTATTATTACTTAC
81380054 TTATT
1 TTATT
81380059 TACTTTTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 10
0.66 0.10 0.24
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 6 0.22
17 10 0.37
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATTATTATTACTTAC
Found at i:81386739 original size:31 final size:31
Alignment explanation
Indices: 81386694--81386809 Score: 151
Period size: 31 Copynumber: 3.7 Consensus size: 31
81386684 AGTGTACAAT
* *
81386694 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTAGTAGCTTCAGCTACCTGATCA
* *
81386725 GTCAAAAGTAGTAGCTTCAGCTACCTGATTA
1 GTGAAAAGTAGTAGCTTCAGCTACCTGATCA
* *
81386756 GTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTAGTAGCTTCAGCTACCTGATCA
* * *
81386787 GTGAATAGTAATAGCTTCGGCTA
1 GTGAAAAGTAGTAGCTTCAGCTA
81386810 TCGAATGTGA
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTAGTAGCTTCAGCTACCTGATCA
Found at i:81386770 original size:62 final size:60
Alignment explanation
Indices: 81386691--81386838 Score: 181
Period size: 62 Copynumber: 2.4 Consensus size: 60
81386681 TTGAGTGTAC
*
81386691 AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTCAAAAGTAGTAGCTTCAGCTACCTG
1 AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTCAAAAGTAATAGCTTCAGCTACC-G
* * * * * * *
81386752 ATTAGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTGAATAGTAATAGCTTCGGCTATCG
1 AAT-GTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTCAAAAGTAATAGCTTCAGCTACCG
*
81386813 AATGTGAAAAG-GGATAGCTTTGGCTA
1 AATGTGAAAAGTGG-TAGCTTCGGCTA
81386839 TCGAATGTGA
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
59 2 0.03
60 17 0.23
61 5 0.07
62 49 0.67
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (60 bp):
AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTCAAAAGTAATAGCTTCAGCTACCG
Found at i:81386882 original size:29 final size:29
Alignment explanation
Indices: 81386797--81386862 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
81386787 GTGAATAGTA
81386797 ATAGCTTCGGCTATCGAATGTGAAAAGGG
1 ATAGCTTCGGCTATCGAATGTGAAAAGGG
*
81386826 ATAGCTTTGGCTATCGAATGTGAAAAGGG
1 ATAGCTTCGGCTATCGAATGTGAAAAGGG
81386855 ATAGCTTC
1 ATAGCTTC
81386863 AGATATCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
ATAGCTTCGGCTATCGAATGTGAAAAGGG
Found at i:81386909 original size:33 final size:33
Alignment explanation
Indices: 81386872--81387070 Score: 281
Period size: 33 Copynumber: 6.0 Consensus size: 33
81386862 CAGATATCAA
* * *
81386872 ATTTGGAAAGGAAAGGTATACTTTGTGTTTACT
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* **
81386905 ATTTGAAAATGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
81386938 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
**
81386971 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
81387004 ATATGAAAAGGGAAGGTATACTTTGTGTATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
81387037 ATATGAAAAGGAAAGGTATACTTTGTGTGTACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
81387070 A
1 A
81387071 CTCGGAAAGA
Statistics
Matches: 148, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 148 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:81406823 original size:39 final size:39
Alignment explanation
Indices: 81406766--81406858 Score: 150
Period size: 39 Copynumber: 2.4 Consensus size: 39
81406756 TTTTTAAGAA
81406766 TAAAGTTTTTTTTTATAATTTTTATACTTCTTAATAATAT
1 TAAAG-TTTTTTTTATAATTTTTATACTTCTTAATAATAT
*
81406806 TAAAGTTTTTTTTATAATTTTTATACTTCTTAATAATGT
1 TAAAGTTTTTTTTATAATTTTTATACTTCTTAATAATAT
* *
81406845 TAAAGATTTATTTA
1 TAAAGTTTTTTTTA
81406859 AAAAAAATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
39 45 0.90
40 5 0.10
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.58
Consensus pattern (39 bp):
TAAAGTTTTTTTTATAATTTTTATACTTCTTAATAATAT
Found at i:81417639 original size:20 final size:20
Alignment explanation
Indices: 81417606--81417655 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
81417596 AAGAAATATA
*
81417606 TAAAAAGTACAATAAT-ATTT
1 TAAAAA-TAAAATAATAATTT
81417626 TCAAAAATAAAATAATAAATTT
1 T-AAAAATAAAATAAT-AATTT
81417648 TAAAAATA
1 TAAAAATA
81417656 TATAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 9 0.35
21 12 0.46
22 5 0.19
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (20 bp):
TAAAAATAAAATAATAATTT
Found at i:81417665 original size:23 final size:22
Alignment explanation
Indices: 81417616--81417667 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
81417606 TAAAAAGTAC
*
81417616 AATAATATTTTCAAAAATAAAAT
1 AATAA-ATTTTCAAAAATAAAAA
81417639 AATAAATTTT-AAAAATATATAAA
1 AATAAATTTTCAAAAATA-A-AAA
81417662 AATAAA
1 AATAAA
81417668 AAAAATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 7 0.27
22 6 0.23
23 13 0.50
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATTTTCAAAAATAAAAA
Found at i:81417671 original size:19 final size:19
Alignment explanation
Indices: 81417649--81417708 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
81417639 AATAAATTTT
81417649 AAAAATATATAAAAATAAA
1 AAAAATATATAAAAATAAA
*
81417668 AAAAATATTATTGAGAAAA-AAT
1 AAAAATA-TA-T-A-AAAATAAA
*
81417690 AATAATATATAAAAATAAA
1 AAAAATATATAAAAATAAA
81417709 TATTTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
18 4 0.12
19 10 0.30
20 3 0.09
21 3 0.09
22 9 0.27
23 4 0.12
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (19 bp):
AAAAATATATAAAAATAAA
Found at i:81417703 original size:16 final size:15
Alignment explanation
Indices: 81417684--81417732 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
81417674 ATTATTGAGA
81417684 AAAAATAATAATATAT
1 AAAAATAA-AATATAT
* *
81417700 AAAAATAAATATTTTT
1 AAAAATAAA-ATATAT
81417716 AAAAATAAAATA-AT
1 AAAAATAAAATATAT
81417730 AAA
1 AAA
81417733 GTTAAATCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 4 0.14
15 3 0.11
16 21 0.75
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAATAAAATATAT
Found at i:81417704 original size:34 final size:35
Alignment explanation
Indices: 81417649--81417732 Score: 98
Period size: 35 Copynumber: 2.3 Consensus size: 35
81417639 AATAAATTTT
* *
81417649 AAAAATATATAAAAATAAAAA-AAATATTATTGAGA
1 AAAAATA-ATAAAAATAAAAATAAATATTATTAAAA
* *
81417684 AAAAATAATAATATATAAAAATAAATATTTTTAAAA
1 AAAAATAATAA-AAATAAAAATAAATATTATTAAAA
81417720 ATAAAATAATAAA
1 A-AAAATAATAAA
81417733 GTTAAATCTC
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
34 4 0.10
35 15 0.36
36 13 0.31
37 10 0.24
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (35 bp):
AAAAATAATAAAAATAAAAATAAATATTATTAAAA
Found at i:81417710 original size:17 final size:17
Alignment explanation
Indices: 81417600--81417730 Score: 54
Period size: 16 Copynumber: 7.2 Consensus size: 17
81417590 AAATCAAAGA
81417600 AATATATAAAAAGTACAAT
1 AATATATAAAAA-TA-AAT
*
81417619 AATATTTTCAAAAATAAAAT
1 AATA-TAT-AAAAAT-AAAT
* *
81417639 AATAAATTTTAAAAATATAT
1 AAT--A-TATAAAAATAAAT
*
81417659 AA-AAATAAAAA-AAAT
1 AATATATAAAAATAAAT
* *
81417674 ATTAT-TGAGAAAAAATAAT
1 AATATAT-A-AAAATA-AAT
81417693 AATATATAAAAATAAAT
1 AATATATAAAAATAAAT
* *
81417710 -ATTTTTAAAAATAAAAT
1 AATATATAAAAAT-AAAT
81417727 AATA
1 AATA
81417731 AAGTTAAATC
Statistics
Matches: 87, Mismatches: 12, Indels: 27
0.69 0.10 0.21
Matches are distributed among these distances:
15 5 0.06
16 18 0.21
17 12 0.14
18 8 0.09
19 12 0.14
20 15 0.17
21 12 0.14
22 5 0.06
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
AATATATAAAAATAAAT
Found at i:81419664 original size:24 final size:25
Alignment explanation
Indices: 81419637--81419683 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
81419627 GAATACAAAC
81419637 ATATTT-TTATAAATA-TAATAAATT
1 ATATTTATT-TAAATATTAATAAATT
81419661 ATATTTATTTAAATATTAATAAA
1 ATATTTATTTAAATATTAATAAA
81419684 ATAAGTGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
ATATTTATTTAAATATTAATAAATT
Found at i:81420865 original size:2 final size:2
Alignment explanation
Indices: 81420858--81420895 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
81420848 TTGCTCTAAT
81420858 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81420896 AAACTTTAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81421388 original size:2 final size:2
Alignment explanation
Indices: 81421381--81421418 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
81421371 GTTTGTTTTA
81421381 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81421419 TACCTTCTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81425047 original size:12 final size:12
Alignment explanation
Indices: 81425030--81425065 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
81425020 ACAATGTTAA
81425030 TGTGATAATTTG
1 TGTGATAATTTG
81425042 TGTGATAATTTG
1 TGTGATAATTTG
81425054 TGTGATAATTTG
1 TGTGATAATTTG
81425066 ATTTGCAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (12 bp):
TGTGATAATTTG
Found at i:81425451 original size:47 final size:47
Alignment explanation
Indices: 81425397--81425490 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
81425387 ATAGTGTTTA
81425397 GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC
1 GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC
81425444 GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC
1 GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC
81425491 TACCTTTTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23
Consensus pattern (47 bp):
GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC
Found at i:81425914 original size:38 final size:38
Alignment explanation
Indices: 81425872--81425947 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
81425862 ATAGTTACGA
81425872 GTATCCATATTTTTTCATAATCATAACCCATATATTTT
1 GTATCCATATTTTTTCATAATCATAACCCATATATTTT
81425910 GTATCCATATTTTTTCATAATCATAACCCATATATTTT
1 GTATCCATATTTTTTCATAATCATAACCCATATATTTT
81425948 CTTCTTTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.03, T:0.47
Consensus pattern (38 bp):
GTATCCATATTTTTTCATAATCATAACCCATATATTTT
Found at i:81430462 original size:2 final size:2
Alignment explanation
Indices: 81430455--81430479 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
81430445 GAACTCTACC
81430455 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
81430480 GCGCTTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81430830 original size:24 final size:24
Alignment explanation
Indices: 81430803--81430851 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
81430793 AGGAGCCCCG
81430803 TAACAATTACTAATATTAGTTTGA
1 TAACAATTACTAATATTAGTTTGA
81430827 TAACAATTACTAATATTAGTTTGA
1 TAACAATTACTAATATTAGTTTGA
81430851 T
1 T
81430852 GGAGAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (24 bp):
TAACAATTACTAATATTAGTTTGA
Found at i:81431351 original size:36 final size:37
Alignment explanation
Indices: 81431307--81431376 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 37
81431297 ATGATTAAAC
*
81431307 AATTCAATAAAATAAATATTACA-AAATGTGAAATTT
1 AATTCAATAAAATAAATAGTACACAAATGTGAAATTT
* *
81431343 AATTCAATAATATAAATAGTAGACAAATGTGAAA
1 AATTCAATAAAATAAATAGTACACAAATGTGAAA
81431377 AAAAGTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 20 0.67
37 10 0.33
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.30
Consensus pattern (37 bp):
AATTCAATAAAATAAATAGTACACAAATGTGAAATTT
Found at i:81431420 original size:19 final size:19
Alignment explanation
Indices: 81431391--81431444 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
81431381 GTTTTGAGAG
81431391 TTTAGGGGGAAGTAAAACTT
1 TTTA-GGGGAAGTAAAACTT
*
81431411 TTTAGGGGAAGTAAAAGTT
1 TTTAGGGGAAGTAAAACTT
**
81431430 TTGGGGGGAA-TAAAA
1 TTTAGGGGAAGTAAAA
81431445 GGAAAAAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 5 0.16
19 22 0.71
20 4 0.13
ACGTcount: A:0.37, C:0.02, G:0.33, T:0.28
Consensus pattern (19 bp):
TTTAGGGGAAGTAAAACTT
Found at i:81442136 original size:46 final size:45
Alignment explanation
Indices: 81442051--81442154 Score: 122
Period size: 46 Copynumber: 2.3 Consensus size: 45
81442041 TGTGCTAGTG
*
81442051 TAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTA
1 TAAGACATGTCTGGGACATGCATT-GCCACATTACGAGAGCCAGTA
* * *
81442097 TAAGACATGTCTGGGACATGCA-T-CGACATTGAGACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATTGCCACATT---ACGAGAGCCAGTA
81442143 TAAGACATGTCT
1 TAAGACATGTCT
81442155 TGTAACACCC
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
43 6 0.12
45 1 0.02
46 44 0.86
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (45 bp):
TAAGACATGTCTGGGACATGCATTGCCACATTACGAGAGCCAGTA
Found at i:81443136 original size:2 final size:2
Alignment explanation
Indices: 81443124--81443158 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
81443114 ATCACTCAAG
*
81443124 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81443159 TTAGCAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:81449859 original size:40 final size:40
Alignment explanation
Indices: 81449762--81449987 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
81449752 TCGAATGATG
* * *
81449762 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
81449802 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81449842 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81449882 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
81449922 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGGGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81449963 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81449988 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.93
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81461669 original size:40 final size:40
Alignment explanation
Indices: 81461623--81461807 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
81461613 CTCGCACAAG
**
81461623 GCCTTCGGGTCTTAGCTTGGATAT-GATCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-TCACTAGCATAAAT
* * *
81461663 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* * * *
81461703 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* * * * *
81461743 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAACACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCATAAAT
*
81461784 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
81461808 CATTCGAATA
Statistics
Matches: 119, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
40 91 0.76
41 28 0.24
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
Found at i:81461725 original size:80 final size:81
Alignment explanation
Indices: 81461623--81461807 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 81
81461613 CTCGCACAAG
** *
81461623 GCCTTCGGGTCTTAGCTTGGATAT-GATCACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATATAG-TAACTAGCATAAATGCCTTC-GGATCTTAGCCCGGATA
* * *
81461686 TAGTCGC-TAGCACAAAT
64 TAGTCACTTAACACAAAA
* * * *
81461703 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGTCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAATGCCTTCGGATCTTAGCCCGGATATA
81461768 GTCACTTAACACAAAA
66 GTCACTTAACACAAAA
*
81461784 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
81461808 CATTCGAATA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 56 0.63
81 30 0.34
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAATGCCTTCGGATCTTAGCCCGGATATA
GTCACTTAACACAAAA
Found at i:81466480 original size:93 final size:93
Alignment explanation
Indices: 81466368--81466539 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
81466358 CGCCCATAAG
* *
81466368 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
81466432 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
81466461 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81466526 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81466540 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81466536 original size:46 final size:46
Alignment explanation
Indices: 81466361--81466536 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
81466351 TGTAACCCGC
* *
81466361 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* *
81466407 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
81466457 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81466500 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81466537 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81470458 original size:28 final size:29
Alignment explanation
Indices: 81470394--81470495 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
81470384 GTGACGAGAT
* *
81470394 TGGCACTGAGTGTGCGAGCTTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
* * *
81470423 CGGCACTAAGTGTG-GAGTTTGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTTGAATC-ATA
* *
81470451 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
81470480 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81470496 TGATTGAGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
27 1 0.02
28 20 0.34
29 36 0.62
30 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:81470895 original size:13 final size:13
Alignment explanation
Indices: 81470879--81470904 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81470869 GGTATGGCTG
81470879 GAACATTTGGCCT
1 GAACATTTGGCCT
81470892 GAACATTTGGCCT
1 GAACATTTGGCCT
81470905 TGTTTCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
GAACATTTGGCCT
Found at i:81476725 original size:19 final size:19
Alignment explanation
Indices: 81476698--81476740 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
81476688 ATAAATTAAG
*
81476698 TTTAAGTCTATTT-AAAATA
1 TTTAAGTCT-TTTGAAAACA
*
81476717 TTTATGTCTTTTGAAAACA
1 TTTAAGTCTTTTGAAAACA
81476736 TTTAA
1 TTTAA
81476741 ACTGCAGAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (19 bp):
TTTAAGTCTTTTGAAAACA
Found at i:81478842 original size:15 final size:15
Alignment explanation
Indices: 81478822--81478854 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
81478812 TCCTAAATGT
*
81478822 GTTTAGGGTTTTAGG
1 GTTTAGGGTTTTAAG
81478837 GTTTAGGGTTTTAAG
1 GTTTAGGGTTTTAAG
81478852 GTT
1 GTT
81478855 ATGAAGCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.48
Consensus pattern (15 bp):
GTTTAGGGTTTTAAG
Found at i:81480579 original size:19 final size:19
Alignment explanation
Indices: 81480541--81480579 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
81480531 AAAAGCTATG
*
81480541 TGTTATACGGATAAATTAC
1 TGTTATACGGATAAAGTAC
* *
81480560 TGTTATATGGATGAAGTAC
1 TGTTATACGGATAAAGTAC
81480579 T
1 T
81480580 ATTTAAATGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (19 bp):
TGTTATACGGATAAAGTAC
Found at i:81483787 original size:6 final size:6
Alignment explanation
Indices: 81483776--81483987 Score: 170
Period size: 6 Copynumber: 34.8 Consensus size: 6
81483766 AACCAAAATG
*
81483776 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
81483824 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * *
81483873 AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C AGAATT AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* * * * *
81483922 AGAATC AGTATT AGTAA-C AGAATC AAAATC AGAATC AGAATT AG-GTGAC
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C
81483971 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
81483988 ATGAATGCAA
Statistics
Matches: 165, Mismatches: 22, Indels: 38
0.73 0.10 0.17
Matches are distributed among these distances:
5 12 0.07
6 137 0.83
7 12 0.07
8 4 0.02
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:81483961 original size:104 final size:107
Alignment explanation
Indices: 81483776--81483981 Score: 346
Period size: 110 Copynumber: 1.9 Consensus size: 107
81483766 AACCAAAATG
81483776 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATC--AA-
81483841 CAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATTAGGTGAC
63 CAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATTAGGTGAC
* *
81483886 AGAATCAGAATCAGAATCAGTAACAGAATTAGAATCAGAATCAGTATTAGTAACAGAATC-A-A-
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAACAG
81483948 AATCAGAATCAGAATTAGGTGACAGAATCAGAAT
66 AATCAGAATCAGAATTAGGTGACAGAATCAGAAT
81483982 CAGAATATGA
Statistics
Matches: 94, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
104 34 0.36
105 1 0.01
107 1 0.01
110 58 0.62
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.20
Consensus pattern (107 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAACAG
AATCAGAATCAGAATTAGGTGACAGAATCAGAATTAGGTGAC
Found at i:81484142 original size:27 final size:26
Alignment explanation
Indices: 81484105--81484170 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
81484095 AGCATGGCTG
*
81484105 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
81484131 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
81484158 CCAGAATCAGATA
1 CCAGAA-CAGATA
81484171 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:81484175 original size:27 final size:27
Alignment explanation
Indices: 81484105--81484178 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
81484095 AGCATGGCTG
* *
81484105 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
81484131 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
81484158 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
81484179 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:81484185 original size:27 final size:27
Alignment explanation
Indices: 81484129--81484186 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
81484119 GTGACAGAGT
* * *
81484129 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
81484156 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
81484183 CACC
1 CACC
81484187 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:81484762 original size:27 final size:28
Alignment explanation
Indices: 81484700--81484763 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
81484690 TAGTCACTTG
*
81484700 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
81484728 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
81484754 CCCACAAGGG
1 CCCACAAGGG
81484764 TATCTCGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:81484775 original size:27 final size:27
Alignment explanation
Indices: 81484745--81484939 Score: 137
Period size: 27 Copynumber: 7.2 Consensus size: 27
81484735 GGCAAAATGG
* *
81484745 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTTTACCCTACAAGGGTATTTCGA
* * * * *
81484772 TAATTCTACCCTATAGGGGTATTTTGG
1 TAATTTTACCCTACAAGGGTATTTCGA
81484799 T-ATTTCTACCCTACAAGGGTATTTCGA
1 TAATTT-TACCCTACAAGGGTATTTCGA
* * * * *
81484826 TAATTCTATCCTACAGGGGTATTTTGG
1 TAATTTTACCCTACAAGGGTATTTCGA
* * * *
81484853 TAATTCTATCCTATAAGGGTATTT-TA
1 TAATTTTACCCTACAAGGGTATTTCGA
* * *
81484879 GTAATTCTACCCTATAGGGGTATTTCGGA
1 -TAATTTTACCCTACAAGGGTATTTC-GA
* *
81484908 -AATTCTACCCTACAGGGGTATTTC-A
1 TAATTTTACCCTACAAGGGTATTTCGA
81484933 GTAATTT
1 -TAATTT
81484940 CACAATCGAG
Statistics
Matches: 135, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.01
26 3 0.02
27 127 0.94
28 3 0.02
29 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTTTACCCTACAAGGGTATTTCGA
Found at i:81484800 original size:54 final size:53
Alignment explanation
Indices: 81484742--81484929 Score: 241
Period size: 54 Copynumber: 3.5 Consensus size: 53
81484732 AAGGGCAAAA
* *
81484742 TGGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTAT-TCGATAATTCTACCCTATAGGGGTATTT
* * *
81484796 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTA-TTCGATAATTCTACCCTATAGGGGTATTT
* * **
81484850 TGGTAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTCGA-TAATTCTACCCTATAGGGGTATTT
* * *
81484904 CGGAAATTCTACCCTACAGGGGTATT
1 TGGTAATTCTACCCTACAAGGGTATT
81484930 TCAGTAATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 3 0.03
54 111 0.97
55 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (53 bp):
TGGTAATTCTACCCTACAAGGGTATTCGATAATTCTACCCTATAGGGGTATTT
Found at i:81484867 original size:81 final size:81
Alignment explanation
Indices: 81484772--81484930 Score: 239
Period size: 81 Copynumber: 2.0 Consensus size: 81
81484762 GGTATCTCGA
* * * *
81484772 TAATTCTACCCTATAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTATC
1 TAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGA-AATTCTACC
81484836 CTACAGGGGTATTTTGG
65 CTACAGGGGTATTTTGG
* * *
81484853 TAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGAAATTCTACCC
1 TAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGAAATTCTACCC
81484918 TACAGGGGTATTT
66 TACAGGGGTATTT
81484931 CAGTAATTTC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (81 bp):
TAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGAAATTCTACCC
TACAGGGGTATTTTGG
Found at i:81484937 original size:81 final size:80
Alignment explanation
Indices: 81484745--81484938 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 80
81484735 GGCAAAATGG
* * * * * * *
81484745 TAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTTGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCG-TAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCC
81484810 TACAAGGGTATTTCGA
65 TACAAGGGTATTTCGA
* * *
81484826 TAATTCTATCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTA-TTTCGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCC
* *
81484891 TATAGGGGTATTTCGGA
65 TACAAGGGTATTTC-GA
81484908 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTC-GTAATT
81484939 TCACAATCGA
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 3 0.03
81 88 0.92
82 5 0.05
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (80 bp):
TAATTCTACCCTACAGGGGTATTTCGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCT
ACAAGGGTATTTCGA
Found at i:81484973 original size:27 final size:27
Alignment explanation
Indices: 81484943--81485516 Score: 714
Period size: 27 Copynumber: 21.3 Consensus size: 27
81484933 GTAATTTCAC
81484943 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
81484970 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81484997 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * * **
81485024 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81485051 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81485078 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81485105 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
81485132 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81485159 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** * * * **
81485186 AATTAAGGGTAAAATGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81485213 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* ** *
81485240 AATTGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81485267 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
81485294 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81485321 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
81485348 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81485375 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
81485402 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81485429 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
81485456 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81485483 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
81485510 AATCGAG
1 AATCGAG
81485517 AGTACTTTGG
Statistics
Matches: 471, Mismatches: 60, Indels: 32
0.84 0.11 0.06
Matches are distributed among these distances:
26 8 0.02
27 454 0.96
28 9 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:81485531 original size:162 final size:162
Alignment explanation
Indices: 81484947--81485545 Score: 959
Period size: 162 Copynumber: 3.7 Consensus size: 162
81484937 TTTCACAATC
*
81484947 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT-GATAATTTTGTAAACTGAGGGT-AAA
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTCTGTAAACTGAGGGTAAAA
* *
81485010 CTAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCT
65 C-GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCT
*
81485075 ATAAATCGAGGGTAAAACAGTAATTCTGTAAACT
129 ATAAATCGAGGGTAAAACAGTAATTCTATAAACT
*
81485109 GAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* * *
81485174 GGTAATTCTGTAAATTAAGGGTAAAATGATAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT
66 GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT
* *
81485239 AAATTGAGGGTAAAATAGTAATTCTATAAACT
131 AAATCGAGGGTAAAACAGTAATTCTATAAACT
**
81485271 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAC
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* * * *
81485336 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGT
66 GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT
81485401 AAATCGAGGGTAAAACAGTAATTCTATAAACT
131 AAATCGAGGGTAAAACAGTAATTCTATAAACT
81485433 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* * **** *
81485498 GGTAATTCTGTAAATCGAGAGTACTTTGGTAATTTTACAAGTCGAGGG
66 GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGG
81485546 CATTTCAGTA
Statistics
Matches: 404, Mismatches: 31, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
162 399 0.99
163 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (162 bp):
GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
GGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT
AAATCGAGGGTAAAACAGTAATTCTATAAACT
Found at i:81485545 original size:54 final size:54
Alignment explanation
Indices: 81484947--81485516 Score: 798
Period size: 54 Copynumber: 10.6 Consensus size: 54
81484937 TTTCACAATC
*
81484947 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT-GATAATTTTGTAAACT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTCTGTAAACT
* * * *
81485001 GAGGGT-AAACTAGTAATTCTGTAAATCAAGGGTAAAACAGTAATT-T-TACAAAT
1 GAGGGTAAAAC-GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA-AACT
* *
81485054 CGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACT
1 -GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
*
81485109 GAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATAGTAATTCTGTAAACT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
** *
81485163 GAGGGTAAAACGGTAATTCTGTAAATTAAGGGTAAAAT-GATAATT-T-TACAAAT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTCTGTA-AACT
* * *
81485216 CGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATAGTAATTCTATAAACT
1 -GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
**
81485271 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
** *
81485325 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-T-TAAAAAT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGT-AAACT
* * *
81485378 CGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACT
1 -GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
81485433 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
81485487 GAGGGTAAAACGGTAATTCTGTAAATCGAG
1 GAGGGTAAAACGGTAATTCTGTAAATCGAG
81485517 AGTACTTTGG
Statistics
Matches: 471, Mismatches: 28, Indels: 34
0.88 0.05 0.06
Matches are distributed among these distances:
52 5 0.01
53 18 0.04
54 424 0.90
55 19 0.04
56 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
Found at i:81490170 original size:49 final size:49
Alignment explanation
Indices: 81490098--81490373 Score: 525
Period size: 49 Copynumber: 5.6 Consensus size: 49
81490088 AGGATCTAAT
81490098 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
*
81490147 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
81490196 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
81490245 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
81490294 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
* *
81490343 AGTGTATGTATATGTGATAAAGCCTAATGGC
1 AGTGTATGTATATGTGATGAGGCCTAATGGC
81490374 TAATGTAAAA
Statistics
Matches: 223, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 223 1.00
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.31
Consensus pattern (49 bp):
AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
Found at i:81490525 original size:37 final size:37
Alignment explanation
Indices: 81490475--81490596 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
81490465 GGAATATGTT
*
81490475 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
81490512 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
81490549 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
81490586 CCGGGTAAGAC
1 CCGGGTAAGAC
81490597 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:81492629 original size:29 final size:29
Alignment explanation
Indices: 81492587--81492779 Score: 350
Period size: 29 Copynumber: 6.7 Consensus size: 29
81492577 GCGAATGATT
81492587 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
81492616 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
81492645 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
81492674 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
81492703 GAGGCACTGTGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
81492732 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
81492761 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
81492780 TTTTTCAACA
Statistics
Matches: 160, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 160 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:81494232 original size:49 final size:49
Alignment explanation
Indices: 81494160--81494435 Score: 525
Period size: 49 Copynumber: 5.6 Consensus size: 49
81494150 AGGATCTAAT
81494160 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
*
81494209 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
81494258 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
81494307 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
81494356 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
* *
81494405 AGTGTATGTATATGTGATAAAGCCTAATGGC
1 AGTGTATGTATATGTGATGAGGCCTAATGGC
81494436 TAATGTAAAA
Statistics
Matches: 223, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 223 1.00
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.31
Consensus pattern (49 bp):
AGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAA
Found at i:81494587 original size:37 final size:37
Alignment explanation
Indices: 81494537--81494658 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
81494527 GGAATATGTT
*
81494537 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
81494574 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
81494611 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
81494648 CCGGGTAAGAC
1 CCGGGTAAGAC
81494659 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:81497943 original size:48 final size:48
Alignment explanation
Indices: 81497865--81497961 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
81497855 CCTTAGAACA
* *
81497865 TCCAAAAGGAAAAATTGAGGATGTATTGGTACGTGTAGATAAATTTAT
1 TCCAAAAGAAAAAATTGAGGACGTATTGGTACGTGTAGATAAATTTAT
*
81497913 TCCAGAAGAAAAAATTGAGGACGTATTGGTACGTGTAGATAAATTTAT
1 TCCAAAAGAAAAAATTGAGGACGTATTGGTACGTGTAGATAAATTTAT
81497961 T
1 T
81497962 TTCCCTGCTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (48 bp):
TCCAAAAGAAAAAATTGAGGACGTATTGGTACGTGTAGATAAATTTAT
Found at i:81498586 original size:24 final size:24
Alignment explanation
Indices: 81498552--81498599 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
81498542 ATATTCGTGG
81498552 CATTAGCCCGTCTGTTTACATGCA
1 CATTAGCCCGTCTGTTTACATGCA
* *
81498576 CATTAGTCCGTCTGTTTGCATGCA
1 CATTAGCCCGTCTGTTTACATGCA
81498600 TAAGGTCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (24 bp):
CATTAGCCCGTCTGTTTACATGCA
Found at i:81501715 original size:39 final size:39
Alignment explanation
Indices: 81501625--81501881 Score: 275
Period size: 39 Copynumber: 6.3 Consensus size: 39
81501615 CGAGACTTTA
* * ** *
81501625 AGCCCGAATATAATACCAGCATAAATGCCTTCGGG-CTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGACTT
**
81501663 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGGTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGACTT
* * *
81501702 AGCCTGGATATAACACCAGCACAAATGCCTTTGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGACTT
* *
81501741 AGCCCGGATATAATC-CCAGCACGAATGCCTTCGAGACTT
1 AGCCCGGATATAA-CACCAGCACGAATGCCTTTGGGACTT
*
81501780 AGCCCGGATATAACACCAGCATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGG--AT---------ATAACACCAGCACGAATGCCTTTGGGACTT
81501830 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGACTT
81501869 AGCCCGGATATAA
1 AGCCCGGATATAA
81501882 TTCTCCATTA
Statistics
Matches: 189, Mismatches: 16, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
38 30 0.16
39 119 0.63
40 1 0.01
41 2 0.01
48 2 0.01
49 1 0.01
50 34 0.18
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTTGGGACTT
Found at i:81501831 original size:50 final size:50
Alignment explanation
Indices: 81501756--81501850 Score: 181
Period size: 50 Copynumber: 1.9 Consensus size: 50
81501746 GGATATAATC
81501756 CCAGCACGAATGCCTTCGAGACTTAGCCCGGATATAACACCAGCATAACA
1 CCAGCACGAATGCCTTCGAGACTTAGCCCGGATATAACACCAGCATAACA
*
81501806 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCA
1 CCAGCACGAATGCCTTCGAGACTTAGCCCGGATATAACACCAGCA
81501851 CGAATGCCTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.32, C:0.33, G:0.20, T:0.16
Consensus pattern (50 bp):
CCAGCACGAATGCCTTCGAGACTTAGCCCGGATATAACACCAGCATAACA
Found at i:81501868 original size:89 final size:89
Alignment explanation
Indices: 81501711--81501881 Score: 281
Period size: 89 Copynumber: 1.9 Consensus size: 89
81501701 TAGCCTGGAT
* *
81501711 ATAACACCAGCACAAATGCCTTTGGGGCTTAGCCCGGATATAATCCCAGCACGAATGCCTTCGAG
1 ATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATCCCAGCACGAATGCCTTCGAG
81501776 ACTTAGCCCGGATATAACACCAGC
66 ACTTAGCCCGGATATAACACCAGC
* * *
81501800 ATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA-CACCAGCACGAATGCCTTTGG
1 ATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATC-CCAGCACGAATGCCTTCGA
81501864 GACTTAGCCCGGATATAA
65 GACTTAGCCCGGATATAA
81501882 TTCTCCATTA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
88 1 0.01
89 75 0.99
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (89 bp):
ATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATCCCAGCACGAATGCCTTCGAG
ACTTAGCCCGGATATAACACCAGC
Found at i:81507665 original size:39 final size:39
Alignment explanation
Indices: 81507606--81507844 Score: 363
Period size: 39 Copynumber: 6.2 Consensus size: 39
81507596 TTAAGCCCAA
* * * **
81507606 ATATAATACCAGCACGAATGCCTTTGGGGCTTAGCCTAG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* **
81507645 ATATAACACCAGCACAAATGCCTTCGGGGTTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* *
81507684 ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* *
81507723 ATATAAC-CCAGCACGAATGCCTTCGAGACTTAGCCCGA
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
81507761 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
81507800 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
81507839 ATATAA
1 ATATAA
81507845 TTCTCCATTA
Statistics
Matches: 186, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 34 0.18
39 152 0.82
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
Found at i:81507740 original size:116 final size:116
Alignment explanation
Indices: 81507614--81507844 Score: 365
Period size: 116 Copynumber: 2.0 Consensus size: 116
81507604 AAATATAATA
* * * **
81507614 CCAGCACGAATGCCTTTGGGGCTTAGCCTAG-ATATAACACCAGCACAAATGCCTTCGGGGTTTA
1 CCAGCACGAATGCCTTCGAGACTTAGCC-AGAATATAACACCAGCACAAATGCCTTCGGGACTTA
*
81507678 GCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAAC
65 GCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAC
* *
81507730 CCAGCACGAATGCCTTCGAGACTTAGCCCGAATATAACACCAGCACGAATGCCTTCGGGACTTAG
1 CCAGCACGAATGCCTTCGAGACTTAGCCAGAATATAACACCAGCACAAATGCCTTCGGGACTTAG
*
81507795 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
66 CCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
81507845 TTCTCCATTA
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
115 1 0.01
116 104 0.99
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (116 bp):
CCAGCACGAATGCCTTCGAGACTTAGCCAGAATATAACACCAGCACAAATGCCTTCGGGACTTAG
CCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAC
Found at i:81511318 original size:15 final size:15
Alignment explanation
Indices: 81511298--81511366 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
81511288 GTATCTTGGG
81511298 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
81511313 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
81511328 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
81511343 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
81511358 TTTCTTTAT
1 TTTCTTTAT
81511367 TCGGTTTTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:81511384 original size:30 final size:30
Alignment explanation
Indices: 81511289--81511368 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
81511279 CATAGTATCG
* * * * *
81511289 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
81511319 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
81511349 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
81511369 GGTTTTTTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:81513811 original size:46 final size:46
Alignment explanation
Indices: 81513758--81513933 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
81513748 TATTTGGGCA
81513758 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
81513804 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
81513851 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
81513897 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81513934 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:81513913 original size:93 final size:93
Alignment explanation
Indices: 81513754--81513925 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81513744 GGGATATTTG
* *
81513754 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81513819 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
81513847 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81513912 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
81513926 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:81525899 original size:27 final size:27
Alignment explanation
Indices: 81525861--81525939 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
81525851 AAGGGCAAAA
* *
81525861 CAGTCATTTTACCCTACAGGGGTATGT
1 CAGTCATTTTACACTACAAGGGTATGT
* *
81525888 CAGTCTTTTTACACTACAAGGGTATTT
1 CAGTCATTTTACACTACAAGGGTATGT
* * *
81525915 CGGTAATTTTAAACTACAAGGGTAT
1 CAGTCATTTTACACTACAAGGGTAT
81525940 TTTGATAATT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (27 bp):
CAGTCATTTTACACTACAAGGGTATGT
Found at i:81525991 original size:81 final size:81
Alignment explanation
Indices: 81525906--81526263 Score: 379
Period size: 81 Copynumber: 4.4 Consensus size: 81
81525896 TTACACTACA
* * *
81525906 AGGGTATTTCGGTAATTTTA-AACTACAAGGGTATTTTGATAATTTTACAAATCGGGGGTGTTTC
1 AGGGTATTTCGGTAATTTTACAAAT-TAAGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTC
81525970 GATAATTTTACAAATCG
65 GATAATTTTACAAATCG
* *
81525987 AGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGGTAATTTTACAAATCGAGGGTGTTTCG
1 AGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCG
* *
81526052 ATAATTTCACAAATTG
66 ATAATTTTACAAATCG
* * * *
81526068 -GGGATGTTTCAGTAATTTTACAAATTAAGGGTATTTT-AGTAATTTCA-AAATCGAGGGTATTT
1 AGGG-TATTTCGGTAATTTTACAAATTAAGGGTATTTTGA-TAATTTTACAAATCGAGGGTGTTT
*
81526130 CGGTAATTTTACAAATCG
64 CGATAATTTTACAAATCG
* ** * ** * * * * *
81526148 AGGGTGTTTCTATAATTTCACAAA-TCGGGAGTATTTTGGTAATTTCACAAATTGAAGGTATTT-
1 AGGGTATTTCGGTAATTTTACAAATTAAGG-GTATTTTGATAATTTTACAAATCGAGGGTGTTTC
* *
81526211 TAGTAATTTCAC-AATCG
65 GA-TAATTTTACAAATCG
* *
81526228 AGGGTATTTCAGTAATTTTACAAATTGAGGGTATTT
1 AGGGTATTTCGGTAATTTTACAAATTAAGGGTATTT
81526264 CAGTAATGTC
Statistics
Matches: 235, Mismatches: 33, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
79 3 0.01
80 95 0.40
81 134 0.57
82 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCG
ATAATTTTACAAATCG
Found at i:81526166 original size:107 final size:106
Alignment explanation
Indices: 81525906--81526264 Score: 438
Period size: 107 Copynumber: 3.3 Consensus size: 106
81525896 TTACACTACA
* * * *
81525906 AGGGTATTTCGGTAATTTTA-AACTACAAGGGTATTT-TGATAATTTTACAAATCGGGGGTGTTT
1 AGGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCT-ATAATTTCACAAATCGGGGATGTTT
** * * **
81525969 CGATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATTA
64 CG-TAATTTTACAAATTAAGGGTATTTTAGTAATTTCA-AAATCG
* * * *
81526014 AGGGTATTTTGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATTGGGGATGTTTCA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCTATAATTTCACAAATCGGGGATGTTTC-
81526079 GTAATTTTACAAATTAAGGGTATTTTAGTAATTTCAAAATCG
65 GTAATTTTACAAATTAAGGGTATTTTAGTAATTTCAAAATCG
*
81526121 AGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCTATAATTTCACAAATCGGGAGTAT-TTT
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCTATAATTTCACAAATCGGG-G-ATGTTT
* * *
81526185 GGTAATTTCACAAATTGAA-GGTATTTTAGTAATTTCACAATCG
64 CGTAATTTTACAAATT-AAGGGTATTTTAGTAATTTCAAAATCG
* *
81526228 AGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTC
81526265 AGTAATGTCT
Statistics
Matches: 222, Mismatches: 23, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
107 128 0.58
108 88 0.40
109 6 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (106 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCTATAATTTCACAAATCGGGGATGTTTCG
TAATTTTACAAATTAAGGGTATTTTAGTAATTTCAAAATCG
Found at i:81526265 original size:27 final size:27
Alignment explanation
Indices: 81525906--81526270 Score: 325
Period size: 27 Copynumber: 13.6 Consensus size: 27
81525896 TTACACTACA
* * *
81525906 AGGGTATTTCGGTAATTTTA-AACTACA
1 AGGGTATTTCAGTAATTTTACAAAT-CG
*
81525933 AGGGTATTT-TGATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* *
81525960 GGGGTGTTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
** **
81525987 AGGGTATTTTGGTAATTTTACAAATTA
1 AGGGTATTTCAGTAATTTTACAAATCG
**
81526014 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
81526041 AGGGTGTTTC-GATAATTTCACAAATTG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* **
81526068 -GGGATGTTTCAGTAATTTTACAAATTA
1 AGGG-TATTTCAGTAATTTTACAAATCG
* *
81526095 AGGGTATTTTAGTAATTTCA-AAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
81526121 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
81526148 AGGGTGTTTCTA-TAATTTCACAAATCG
1 AGGGTATTTC-AGTAATTTTACAAATCG
** * *
81526175 -GGAGTATTTTGGTAATTTCACAAATTG
1 AGG-GTATTTCAGTAATTTTACAAATCG
* * *
81526202 AAGGTATTTTAGTAATTTCAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
81526228 AGGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
81526255 AGGGTATTTCAGTAAT
1 AGGGTATTTCAGTAAT
81526271 GTCTCTTTAT
Statistics
Matches: 284, Mismatches: 40, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
26 50 0.18
27 225 0.79
28 9 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:81529880 original size:40 final size:40
Alignment explanation
Indices: 81529825--81530070 Score: 277
Period size: 40 Copynumber: 6.2 Consensus size: 40
81529815 TGAATGATAC
* *
81529825 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
81529865 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* *
81529904 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
81529944 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
81529984 -CGGGCTAAGACCCGAAGGTATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
81530023 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
81530063 CC-GGCTAA
1 CCGGGCTAA
81530071 ATTCCGAGAG
Statistics
Matches: 170, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
38 3 0.02
39 67 0.39
40 96 0.56
41 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:81530038 original size:119 final size:119
Alignment explanation
Indices: 81529825--81530070 Score: 300
Period size: 119 Copynumber: 2.1 Consensus size: 119
81529815 TGAATGATAC
* * *
81529825 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** * * *
81529890 TGCGAGTTGTTATACCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
66 TGCAAGTTACCAAACCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
* * *
81529944 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT-CGGGCTAAGACCCGAAGGTATTT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTC
* * * *
81530007 GTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
65 GTGCAAGTTACCAAA-CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
81530063 CC-GGCTAA
1 CCGGGCTAA
81530071 ATTCCGAGAG
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
118 37 0.34
119 69 0.64
120 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAACCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
Found at i:81530060 original size:79 final size:79
Alignment explanation
Indices: 81529826--81530070 Score: 348
Period size: 79 Copynumber: 3.1 Consensus size: 79
81529816 GAATGATACC
81529826 CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGT
*
81529891 GCGAGTTGTTATAC
66 GCGAGTTGTTATAT
81529905 CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGT
81529970 GCGAGTTGTTATAT
66 GCGAGTTGTTATAT
* * * * * ** * *
81529984 CGGGCTAAGACCCGAAGGTATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-G
1 CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTCG
** *
81530048 TGCTTGTGGTTATAT
65 TGCGAGTTGTTATAT
*
81530063 CCGGCTAA
1 CGGGCTAA
81530071 ATTCCGAGAG
Statistics
Matches: 151, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
79 148 0.98
80 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGT
GCGAGTTGTTATAT
Found at i:81537975 original size:40 final size:40
Alignment explanation
Indices: 81537916--81538128 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
81537906 TGAATGATAC
*
81537916 CCGGGCTAAG-CCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
81537955 CCGGGCTAAGACCCGAAGGCATTGTATGTATGAGGTTGCTTGTATAT
1 CCGGGCTAAGACCCGAAGGCATT-TGTG-CT-A-G-TG-AT-TATAT
*
81538002 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
81538041 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
81538081 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
81538121 CC-GGCTAA
1 CCGGGCTAA
81538129 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
39 42 0.29
40 57 0.40
41 4 0.03
42 5 0.03
43 2 0.01
44 1 0.01
45 5 0.03
46 2 0.01
47 26 0.18
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:81540963 original size:40 final size:40
Alignment explanation
Indices: 81540918--81541082 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
81540908 CGGAATATAA
81540918 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
81540958 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
81540998 CCGG--ATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81541036 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81541075 CCGGATAT
1 CCGGATAT
81541083 CATTCAATTC
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81541039 original size:38 final size:37
Alignment explanation
Indices: 81540934--81541042 Score: 128
Period size: 38 Copynumber: 2.8 Consensus size: 37
81540924 ATAATCACGT
* *
81540934 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT--AACAACTA
* *
81540974 GCACGAATGCCTTCGGGCCTTAGCCCGGATAACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAACAACTA
*
81541012 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
81541043 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
37 2 0.03
38 31 0.51
40 28 0.46
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAACAACTA
Found at i:81541066 original size:78 final size:77
Alignment explanation
Indices: 81540934--81541081 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
81540924 ATAATCACGT
*
81540934 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
81540999 CGGATAACCACTA
65 CGGATAACCACTA
* * ** * *
81541012 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
81541075 CCGGATA
64 CCGGATA
81541082 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAACCACTA
Found at i:81541919 original size:17 final size:19
Alignment explanation
Indices: 81541896--81541941 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
81541886 AAGAAGCATG
81541896 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
81541914 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
81541932 AATCATGCTC
1 AATCATGCTC
81541942 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:81545406 original size:39 final size:39
Alignment explanation
Indices: 81545363--81545497 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
81545353 ACCAATATGG
*
81545363 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAATTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
* * * *
81545402 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAATTGA
* * * * *
81545440 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATA-ATTGA
*
81545481 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
81545498 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
Found at i:81547107 original size:13 final size:13
Alignment explanation
Indices: 81547067--81547100 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81547057 ACATATATAT
* *
81547067 ATAATATTATTTA
1 ATAATAATAGTTA
81547080 ATAATAATAGTTA
1 ATAATAATAGTTA
81547093 ATAATAAT
1 ATAATAAT
81547101 TTATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
ATAATAATAGTTA
Found at i:81547634 original size:20 final size:20
Alignment explanation
Indices: 81547609--81547654 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
81547599 CTAGCTCATA
81547609 ATCTTTAATCAACTCTAGCC
1 ATCTTTAATCAACTCTAGCC
81547629 ATCTTTAATCAACTCTAGCC
1 ATCTTTAATCAACTCTAGCC
81547649 ATCTTT
1 ATCTTT
81547655 GCCTCAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.39
Consensus pattern (20 bp):
ATCTTTAATCAACTCTAGCC
Found at i:81552439 original size:55 final size:52
Alignment explanation
Indices: 81552272--81552469 Score: 202
Period size: 55 Copynumber: 3.7 Consensus size: 52
81552262 AACTTGCCAT
* * *
81552272 TGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTATGAA-TTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAACTT-ATCAA
* *
81552325 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTCTGCCTTATAGTAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCT-TGCC-T-TAG-AACTTATCAA
* * *
81552380 TGCCATGTCTTGACATGGTCTTACATGGTGTCCTTGCCTTAGAAACCTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAG-AA-CTTATCAA
* **
81552434 TTGCCATGCCTTGGCATGAACTTACATGGTATCCTT
1 -TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
81552470 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
52 3 0.02
53 34 0.28
54 10 0.08
55 69 0.57
56 5 0.04
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (52 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAACTTATCAA
Found at i:81558243 original size:8 final size:8
Alignment explanation
Indices: 81558225--81558257 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
81558215 AAGCAAATTA
81558225 TGTGTATTT
1 TGTG-ATTT
81558234 TGTGATTT
1 TGTGATTT
81558242 TGTGATTT
1 TGTGATTT
81558250 TGTGATTT
1 TGTGATTT
81558258 AGGGAGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 20 0.83
9 4 0.17
ACGTcount: A:0.12, C:0.00, G:0.24, T:0.64
Consensus pattern (8 bp):
TGTGATTT
Found at i:81561621 original size:24 final size:24
Alignment explanation
Indices: 81561593--81561639 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
81561583 CTATTAAAAC
81561593 GTGATTGATAATTAATCATTAATG
1 GTGATTGATAATTAATCATTAATG
* *
81561617 GTGATTGTTTATTAATCATTAAT
1 GTGATTGATAATTAATCATTAAT
81561640 TTTTTTATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
GTGATTGATAATTAATCATTAATG
Found at i:81561668 original size:27 final size:28
Alignment explanation
Indices: 81561624--81561676 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
81561614 ATGGTGATTG
*
81561624 TTTATTAATCATTAATTTTT-TTATGAA
1 TTTATTAATCATAAATTTTTATTATGAA
81561651 TTTATT-ATCATAACATTTTTATTATG
1 TTTATTAATCATAA-ATTTTTATTATG
81561677 TTTTGGCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 12 0.52
28 5 0.22
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTATTAATCATAAATTTTTATTATGAA
Found at i:81562031 original size:13 final size:13
Alignment explanation
Indices: 81562013--81562039 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81562003 TATATAATCG
81562013 TGTGTATATATAT
1 TGTGTATATATAT
81562026 TGTGTATATATAT
1 TGTGTATATATAT
81562039 T
1 T
81562040 ATATGCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (13 bp):
TGTGTATATATAT
Found at i:81562840 original size:23 final size:23
Alignment explanation
Indices: 81562814--81562858 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
81562804 TATACTAAAT
**
81562814 ATATATATTTTTTATTTTTAATC
1 ATATATACATTTTATTTTTAATC
*
81562837 ATATTTACATTTTATTTTTAAT
1 ATATATACATTTTATTTTTAAT
81562859 TTTAACATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATATACATTTTATTTTTAATC
Found at i:81568034 original size:20 final size:21
Alignment explanation
Indices: 81568009--81568053 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
81567999 AATTCGAAAA
81568009 TTTTTATAAA-TATTTTG-AAT
1 TTTTTA-AAATTATTTTGCAAT
81568029 TTTTTAAAATTATTTTGCAAT
1 TTTTTAAAATTATTTTGCAAT
81568050 TTTT
1 TTTT
81568054 GTTGAAAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.13
20 13 0.57
21 7 0.30
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTTTAAAATTATTTTGCAAT
Found at i:81570228 original size:3 final size:3
Alignment explanation
Indices: 81570220--81570272 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
81570210 TAAGTTAACT
81570220 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
81570268 TAA TA
1 TAA TA
81570273 GGTTGGTAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:81570288 original size:4 final size:4
Alignment explanation
Indices: 81570279--81570313 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
81570269 AATAGGTTGG
*
81570279 TAGA TAGA TAGA TAGA TAGA TAGA TAAA TAGA TAG
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAG
81570314 TCATTAAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (4 bp):
TAGA
Found at i:81570729 original size:14 final size:14
Alignment explanation
Indices: 81570710--81570740 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81570700 TATTTTTTGG
81570710 TGTTTGAATGAATC
1 TGTTTGAATGAATC
*
81570724 TGTTTGGATGAATC
1 TGTTTGAATGAATC
81570738 TGT
1 TGT
81570741 GTAAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.45
Consensus pattern (14 bp):
TGTTTGAATGAATC
Found at i:81571608 original size:134 final size:134
Alignment explanation
Indices: 81571368--81571635 Score: 518
Period size: 134 Copynumber: 2.0 Consensus size: 134
81571358 TGGAGACATT
81571368 ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
1 ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
*
81571433 AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAACTTAAATACTACCAATATGA
66 AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAACTTAAATACTACAAATATGA
81571498 GAGG
131 GAGG
81571502 ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
1 ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
*
81571567 AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAAGTTAAATACTACAAATATGA
66 AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAACTTAAATACTACAAATATGA
81571632 GAGG
131 GAGG
81571636 GAAAGAACCA
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 132 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.30
Consensus pattern (134 bp):
ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAACTTAAATACTACAAATATGA
GAGG
Found at i:81587057 original size:25 final size:27
Alignment explanation
Indices: 81586999--81587058 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 27
81586989 TTTTAAAATG
81586999 TTAATGAATAATTATGTTAGTTATATCT
1 TTAATG-ATAATTATGTTAGTTATATCT
* * *
81587027 TAAATGATTATTATG-T-GTTATATGT
1 TTAATGATAATTATGTTAGTTATATCT
81587052 TTAATGA
1 TTAATGA
81587059 GATTAAATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 14 0.50
26 1 0.04
27 8 0.29
28 5 0.18
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.50
Consensus pattern (27 bp):
TTAATGATAATTATGTTAGTTATATCT
Found at i:81587062 original size:27 final size:29
Alignment explanation
Indices: 81586999--81587063 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 29
81586989 TTTTAAAATG
*
81586999 TTAATGA-ATAATTATGTTAGTTATATCT
1 TTAATGAGATTATTATGTTAGTTATATCT
* *
81587027 TAAAT--GATTATTATG-T-GTTATATGT
1 TTAATGAGATTATTATGTTAGTTATATCT
81587052 TTAATGAGATTA
1 TTAATGAGATTA
81587064 AATGATTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
25 12 0.40
26 1 0.03
27 13 0.43
28 4 0.13
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (29 bp):
TTAATGAGATTATTATGTTAGTTATATCT
Found at i:81596573 original size:2 final size:2
Alignment explanation
Indices: 81596566--81596606 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
81596556 TCATGACATG
81596566 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81596607 GACTAGTCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81598695 original size:11 final size:11
Alignment explanation
Indices: 81598679--81598704 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81598669 GGATGAAAGA
81598679 TATTCTGCAGT
1 TATTCTGCAGT
81598690 TATTCTGCAGT
1 TATTCTGCAGT
81598701 TATT
1 TATT
81598705 ATCTTGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.50
Consensus pattern (11 bp):
TATTCTGCAGT
Found at i:81606424 original size:40 final size:40
Alignment explanation
Indices: 81606387--81606572 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
81606377 GCTACTCGTT
*
81606387 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
81606427 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
81606467 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81606507 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81606548 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81606573 CATCATTCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81606499 original size:80 final size:82
Alignment explanation
Indices: 81606387--81606572 Score: 242
Period size: 80 Copynumber: 2.3 Consensus size: 82
81606377 GCTACTCGTT
*
81606387 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC-AGATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGA-ATGCCTTC-GGATCTTAACC
*
81606449 CGGATTTAGTAAC-TAGCA
64 CGGATATAGTAACTTAGCA
* **
81606467 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACGAATGCCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCC
*
81606530 GGATATAGTCACTTAGCA
65 GGATATAGTAACTTAGCA
81606548 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81606573 CATCATTCGA
Statistics
Matches: 93, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
79 6 0.06
80 72 0.77
81 15 0.16
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:81618198 original size:43 final size:43
Alignment explanation
Indices: 81618137--81618223 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
81618127 AGGAAGTGAA
* *
81618137 TTAGTTATCATATTTGCAGGATTTTCATAAGTACTAATTTTGC
1 TTAGTCATCATATCTGCAGGATTTTCATAAGTACTAATTTTGC
*
81618180 TTAGTCATCATATCTGCAGGATTTTCATGAGTACTAATTTTGC
1 TTAGTCATCATATCTGCAGGATTTTCATAAGTACTAATTTTGC
81618223 T
1 T
81618224 CACAACAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (43 bp):
TTAGTCATCATATCTGCAGGATTTTCATAAGTACTAATTTTGC
Found at i:81621326 original size:40 final size:39
Alignment explanation
Indices: 81621187--81621340 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
81621177 TGTGAATGAA
* *
81621187 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
81621226 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81621265 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
81621305 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
81621341 TGTTTTGAAC
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81621326 original size:79 final size:79
Alignment explanation
Indices: 81621187--81621340 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
81621177 TGTGAATGAA
** *
81621187 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
81621252 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
81621265 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
81621330 TGTCCCGAAGG
65 AGTCCCGAAGG
81621341 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:81629267 original size:40 final size:39
Alignment explanation
Indices: 81629128--81629281 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
81629118 TGTGAATGAA
* *
81629128 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
81629167 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81629206 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
81629246 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
81629282 TGTTTTGAAC
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81629267 original size:79 final size:79
Alignment explanation
Indices: 81629128--81629281 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
81629118 TGTGAATGAA
** *
81629128 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
81629193 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
81629206 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
81629271 TGTCCCGAAGG
65 AGTCCCGAAGG
81629282 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:81635773 original size:17 final size:17
Alignment explanation
Indices: 81635748--81635800 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
81635738 AAGGCCAATC
*
81635748 TGGGTGTGTGGGCTACA
1 TGGGCGTGTGGGCTACA
*
81635765 TGGGCGTGTGGGCCACA
1 TGGGCGTGTGGGCTACA
*
81635782 CGGGCGTGTGGGCCTACA
1 TGGGCGTGTGGG-CTACA
81635800 T
1 T
81635801 AGGCAAGCCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 26 0.87
18 4 0.13
ACGTcount: A:0.11, C:0.21, G:0.45, T:0.23
Consensus pattern (17 bp):
TGGGCGTGTGGGCTACA
Found at i:81638764 original size:17 final size:17
Alignment explanation
Indices: 81638724--81638776 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 17
81638714 GTAAAAAGTT
81638724 TTTTATACTTCTTTTAATAA
1 TTTTATAC-T-TTTTAA-AA
81638744 -TTTATACTTTTTAAAA
1 TTTTATACTTTTTAAAA
*
81638760 TTTTATATATTTTTAAA
1 TTTTATA-CTTTTTAAA
81638777 TTTCAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.07
17 12 0.40
18 9 0.30
19 7 0.23
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTATACTTTTTAAAA
Found at i:81663378 original size:47 final size:47
Alignment explanation
Indices: 81663252--81663429 Score: 182
Period size: 47 Copynumber: 3.8 Consensus size: 47
81663242 ATAATTTCAC
* * *
81663252 CCATAATGAACTTGGAACGCAACTCAATGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTCACAT
* ** * *
81663298 CCATAATGAACTCGGAACACAACTCAACAAGTTCGAATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTCACAT
* * *
81663344 CCATAAGTGAACTCAGAACGCAACTCAATGAGTTCGGATGCCTCATAAT
1 CCATAA-TGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTCA-CAT
* * * *
81663393 TC-TCACGAACTCGGAACGCAACTCAACGAGTTCGGAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGAT
81663430 CTCAATTTCC
Statistics
Matches: 107, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
46 41 0.38
47 61 0.57
48 2 0.02
49 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTCACAT
Found at i:81665868 original size:40 final size:39
Alignment explanation
Indices: 81665823--81666049 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 39
81665813 ATAACCACAA
* * *** *
81665823 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
81665863 GCACAAATACCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
81665903 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
81665943 GCATAAATGCCTTCGGGACTTAGCCCGG-TATAACAACTC
1 GCA-CAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
81665982 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
81666022 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
81666050 GTATCATTCA
Statistics
Matches: 161, Mismatches: 18, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.20
40 123 0.76
41 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:81666004 original size:79 final size:80
Alignment explanation
Indices: 81665830--81666049 Score: 352
Period size: 79 Copynumber: 2.8 Consensus size: 80
81665820 CAAGCACAAT
* * ** * * * * *
81665830 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATACCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
81665895 AACAACTCGCACGAA
66 AACAACTCGCACGAA
81665910 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG-TAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
81665974 AACAACTCGCACGAA
66 AACAACTCGCACGAA
81665989 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
81666050 GTATCATTCA
Statistics
Matches: 131, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 79 0.60
80 52 0.40
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
AACAACTCGCACGAA
Found at i:81676834 original size:25 final size:24
Alignment explanation
Indices: 81676796--81676848 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
81676786 ATGTTCAAGC
*
81676796 GAGCCATATTAGGAAACTCACAAA
1 GAGCCATATCAGGAAACTCACAAA
** *
81676820 GAGCCTATATCAGGATGCTCATAAA
1 GAGCC-ATATCAGGAAACTCACAAA
81676845 GAGC
1 GAGC
81676849 TGCGTTTGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAGGAAACTCACAAA
Found at i:81678190 original size:39 final size:39
Alignment explanation
Indices: 81678144--81678221 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
81678134 TTTCCTATCA
*
81678144 TGATGCAGACCATGTAAAAATTTTAAAATAATTTTTTTT
1 TGATGCAGACCATGTAAAAATTTTAAAATAAATTTTTTT
81678183 TGATGCAGACCATGTAAAAATTTTAAAATAAATTTTTTT
1 TGATGCAGACCATGTAAAAATTTTAAAATAAATTTTTTT
81678222 CTAACTCGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (39 bp):
TGATGCAGACCATGTAAAAATTTTAAAATAAATTTTTTT
Found at i:81679361 original size:54 final size:54
Alignment explanation
Indices: 81679256--81679395 Score: 145
Period size: 54 Copynumber: 2.6 Consensus size: 54
81679246 TTGTGTGGAT
* * ** *
81679256 CAAGTCAGAGAGTTACACGGTTTAGTACATGGCCTGTGACACGGCCGTGTGAAA
1 CAAGTCAGAGAGTTACACGGTTTAGCACACGGCCTACGACACGGCCATGTGAAA
* * * * **
81679310 CAAGTTAGAGAGTTACACGGTTTGGCACACGGCCTACGACATGGCTATGTGACC
1 CAAGTCAGAGAGTTACACGGTTTAGCACACGGCCTACGACACGGCCATGTGAAA
* * * *
81679364 CAAGTCAGTGAGTTATATGGTTTAGGACACGG
1 CAAGTCAGAGAGTTACACGGTTTAGCACACGG
81679396 TTTGAGACAT
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (54 bp):
CAAGTCAGAGAGTTACACGGTTTAGCACACGGCCTACGACACGGCCATGTGAAA
Found at i:81686801 original size:28 final size:27
Alignment explanation
Indices: 81686761--81686830 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
81686751 AAATTTGTAC
81686761 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTT-GATCATAT
*
81686789 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATCATAT
**
81686816 AGCACCGAGTGTGCG
1 AGCACTAAGTGTGCG
81686831 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATCATAT
Found at i:81689628 original size:46 final size:46
Alignment explanation
Indices: 81689573--81689753 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
81689563 TAGGATGGTT
81689573 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
81689619 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
81689665 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** * *
81689712 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81689754 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:81689734 original size:93 final size:93
Alignment explanation
Indices: 81689575--81689746 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81689565 GGATGGTTGA
* *
81689575 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81689640 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81689668 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81689733 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81689747 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81692680 original size:15 final size:15
Alignment explanation
Indices: 81692660--81692728 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
81692650 GTATCTTGGG
81692660 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
81692675 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
81692690 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
81692705 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
81692720 TTTCTTTAT
1 TTTCTTTAT
81692729 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Done.