Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 263 of 438
Found at i:81692729 original size:30 final size:30
Alignment explanation
Indices: 81692651--81692738 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
81692641 CATAGTATCG
* * * *
81692651 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
81692681 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
81692711 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
81692739 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:81695127 original size:46 final size:46
Alignment explanation
Indices: 81695072--81695205 Score: 232
Period size: 46 Copynumber: 2.9 Consensus size: 46
81695062 CTAGGATGTT
*
81695072 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
81695118 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
81695164 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81695206 GCGGGTTACA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:81697077 original size:46 final size:46
Alignment explanation
Indices: 81696910--81697086 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 46
81696900 TGGTTGGCAT
** *
81696910 CCGAACTCGCTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGTGT
1 CCGAACTCG-TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
81696957 CCGAGACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
81697003 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
81697051 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81697087 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 38 0.35
47 47 0.43
48 13 0.12
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:81699992 original size:15 final size:15
Alignment explanation
Indices: 81699972--81700040 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
81699962 GTATCTTGGG
81699972 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
81699987 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
81700002 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
81700017 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
81700032 TTTCTTTAT
1 TTTCTTTAT
81700041 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:81700041 original size:30 final size:30
Alignment explanation
Indices: 81699963--81700050 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
81699953 CATAGTATCG
* * * *
81699963 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
81699993 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
81700023 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
81700051 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:81701483 original size:29 final size:27
Alignment explanation
Indices: 81701442--81701512 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
81701432 AAATTTGTAC
81701442 AGCACTAAGTGTGCGAGTTTGGATCATAT
1 AGCACTAAGTGTGCGAG-TT-GATCATAT
*
81701471 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATCATAT
**
81701498 AGCACCGAGTGTGCG
1 AGCACTAAGTGTGCG
81701513 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 20 0.51
28 2 0.05
29 17 0.44
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATCATAT
Found at i:81704277 original size:46 final size:46
Alignment explanation
Indices: 81704222--81704402 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
81704212 TAGGATGGTT
81704222 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
81704268 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
81704314 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
81704361 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81704403 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:81704383 original size:93 final size:93
Alignment explanation
Indices: 81704224--81704394 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81704214 GGATGGTTGA
* *
81704224 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81704289 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81704317 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81704382 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81704395 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81707338 original size:15 final size:15
Alignment explanation
Indices: 81707318--81707386 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
81707308 GTATCTTGGG
81707318 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
81707333 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
81707348 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
81707363 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
81707378 TTTCTTTAT
1 TTTCTTTAT
81707387 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:81707387 original size:30 final size:30
Alignment explanation
Indices: 81707309--81707396 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
81707299 CATAGTATCG
* * * *
81707309 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
81707339 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
81707369 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
81707397 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:81709749 original size:46 final size:45
Alignment explanation
Indices: 81709713--81709846 Score: 189
Period size: 46 Copynumber: 2.9 Consensus size: 45
81709703 TAGGATGGTT
*
81709713 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGC-TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA
81709759 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCA
1 GAGC-TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-A
* * *
81709806 AACGC-CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GA-GCTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81709847 GCGGGTTACA
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
46 78 0.96
47 1 0.01
48 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (45 bp):
GAGCTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA
Found at i:81712528 original size:18 final size:19
Alignment explanation
Indices: 81712505--81712550 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
81712495 TTCTGTTAAA
*
81712505 AAAAAAAAGTAAAAAA-TG
1 AAAAAAAAGCAAAAAACTG
81712523 AAAAAAAA-CAAAAAATCTG
1 AAAAAAAAGCAAAAAA-CTG
81712542 AAAAAAAAG
1 AAAAAAAAG
81712551 GGGTGGAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 6 0.25
18 8 0.33
19 10 0.42
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (19 bp):
AAAAAAAAGCAAAAAACTG
Found at i:81712636 original size:3 final size:3
Alignment explanation
Indices: 81712621--81712671 Score: 70
Period size: 3 Copynumber: 17.7 Consensus size: 3
81712611 TACTGCCATG
* *
81712621 GAA GAA TAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAT GAA G-A GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
81712667 GAA GA
1 GAA GA
81712672 GGAGGGTGGC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 4 0.10
3 38 0.90
ACGTcount: A:0.63, C:0.00, G:0.33, T:0.04
Consensus pattern (3 bp):
GAA
Found at i:81712701 original size:13 final size:13
Alignment explanation
Indices: 81712683--81712716 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81712673 GAGGGTGGCG
* *
81712683 AGAAAGGAAAGAA
1 AGAAAGAAAAAAA
81712696 AGAAAGAAAAAAA
1 AGAAAGAAAAAAA
81712709 AGAAAGAA
1 AGAAAGAA
81712717 GAGAGAGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAAAAA
Found at i:81713196 original size:31 final size:31
Alignment explanation
Indices: 81713159--81713218 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
81713149 TTATATGTAT
81713159 TGTTATTTTAAAAGTCGATATAATTTTTTTA
1 TGTTATTTTAAAAGTCGATATAATTTTTTTA
* *
81713190 TGTTATTTTAAAAGTTGTTATAATTTTTT
1 TGTTATTTTAAAAGTCGATATAATTTTTT
81713219 AACTCATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.58
Consensus pattern (31 bp):
TGTTATTTTAAAAGTCGATATAATTTTTTTA
Found at i:81713479 original size:21 final size:21
Alignment explanation
Indices: 81713434--81713481 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
81713424 TTTTTACTTC
*
81713434 AATAAA-CATTAAAAATAAAT
1 AATAAATCAATAAAAATAAAT
*
81713454 TATAAATCAATAAAAATATAA-
1 AATAAATCAATAAAAATA-AAT
81713475 AATAAAT
1 AATAAAT
81713482 ACAAACATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 5 0.22
21 16 0.70
22 2 0.09
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (21 bp):
AATAAATCAATAAAAATAAAT
Found at i:81713954 original size:20 final size:20
Alignment explanation
Indices: 81713911--81713955 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
81713901 CACCCCCTTT
* *
81713911 TTTTTTTTAGATTTTTGTTT
1 TTTTTTTTAGATTTTTATTC
* *
81713931 TTTTTTTTCGTTTTTTATTC
1 TTTTTTTTAGATTTTTATTC
81713951 TTTTT
1 TTTTT
81713956 AACAGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.07, C:0.04, G:0.07, T:0.82
Consensus pattern (20 bp):
TTTTTTTTAGATTTTTATTC
Found at i:81717195 original size:15 final size:15
Alignment explanation
Indices: 81717175--81717206 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
81717165 GAATTTTATG
81717175 TTAATTATATATGTA
1 TTAATTATATATGTA
81717190 TTAATTATATATGTA
1 TTAATTATATATGTA
81717205 TT
1 TT
81717207 TTAGTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (15 bp):
TTAATTATATATGTA
Found at i:81722785 original size:43 final size:43
Alignment explanation
Indices: 81722727--81722875 Score: 146
Period size: 42 Copynumber: 3.5 Consensus size: 43
81722717 CAATGCCAAC
*
81722727 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATGTAATTCAATATCGATGCCTAT
* * *
81722770 ATCCCAGACAGGGTCTTACATG-AAATCAGATA-CGATGCCGAT
1 GTCCCAGACAGGGTCTTACATGTAATTCA-ATATCGATGCCTAT
* * *
81722812 GTCCCAGACATGGTCTTACACT-TAAATCTCAA-ATCGAAGCCTGT
1 GTCCCAGACAGGGTCTTACA-TGT-AAT-TCAATATCGATGCCTAT
*
81722856 GTCCCAGACACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
81722876 CGATATTTCA
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
42 31 0.35
43 24 0.27
44 30 0.34
45 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTAT
Found at i:81728840 original size:28 final size:28
Alignment explanation
Indices: 81728785--81728900 Score: 164
Period size: 28 Copynumber: 4.2 Consensus size: 28
81728775 AGCATGGCTG
* *
81728785 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* *
81728811 CCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
*
81728839 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
*
81728867 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
81728895 CCAGAA
1 CCAGAA
81728901 CGCTTCCTCC
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 4 0.05
27 6 0.07
28 71 0.88
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGGCAGAGCCA
Found at i:81730155 original size:18 final size:18
Alignment explanation
Indices: 81730106--81730162 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
81730096 GGCTATAGAG
81730106 GAAAAGAAGAA-A-AAGA
1 GAAAAGAAGAAGAGAAGA
* *
81730122 GAAAATAGATGAAGAGAGGA
1 G-AAA-AGAAGAAGAGAAGA
*
81730142 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAAGA
81730160 GAA
1 GAA
81730163 TTGTCAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 1 0.03
17 3 0.09
18 20 0.62
19 4 0.12
20 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAAGA
Found at i:81733604 original size:42 final size:43
Alignment explanation
Indices: 81733524--81733625 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
81733514 TCCCAAACGT
* **
81733524 GGTCTTACATGTAATTCAATATCGATGCCTCTATCCCAGACAG
1 GGTCTTACATGTAAATCAATATCGATGCCGATATCCCAGACAG
* *
81733567 GGTCTTACATG-AAATCAGATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAAATCA-ATATCGATGCCGATATCCCAGACAG
*
81733609 GGTCTTACACGTAAATC
1 GGTCTTACATGTAAATC
81733626 TCAAATCGAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
42 32 0.63
43 19 0.37
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCGATATCCCAGACAG
Found at i:81738086 original size:40 final size:40
Alignment explanation
Indices: 81738031--81738288 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
81738021 TGGATGATAA
* * *
81738031 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
81738071 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81738111 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
81738151 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
81738191 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
81738231 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
81738271 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81738289 TACCTAGCTT
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 16 0.08
40 185 0.92
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81740622 original size:80 final size:82
Alignment explanation
Indices: 81740489--81740653 Score: 280
Period size: 80 Copynumber: 2.0 Consensus size: 82
81740479 GAATACTATG
*
81740489 TTTAAAAAGTACTAATAAGCTTTGCTATTTAAGAGAACATCATTACAGACTTGTA-T-TATATAT
1 TTTAAAAAGTACAAATAAGCTTTGCTATTTAAGAGAACATCATTACAGACTTGTATTATATATAT
*
81740552 ATTCATTTACTTAAGAT
66 ATTCATTTACTTAAAAT
* *
81740569 TTTAAAAAGTACAAATGAGCTTTGTTATTTAAGAGAACATCATTACAGACTTGTATTATATATAT
1 TTTAAAAAGTACAAATAAGCTTTGCTATTTAAGAGAACATCATTACAGACTTGTATTATATATAT
81740634 ATTCATTTACTTAAAAT
66 ATTCATTTACTTAAAAT
81740651 TTT
1 TTT
81740654 TGTTGTTTGT
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
80 52 0.66
81 1 0.01
82 26 0.33
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (82 bp):
TTTAAAAAGTACAAATAAGCTTTGCTATTTAAGAGAACATCATTACAGACTTGTATTATATATAT
ATTCATTTACTTAAAAT
Found at i:81742750 original size:28 final size:28
Alignment explanation
Indices: 81742710--81742766 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
81742700 AATGTCAATG
81742710 TTGTAATTATGGCTAAGGTTTAGTTTTA
1 TTGTAATTATGGCTAAGGTTTAGTTTTA
81742738 TTGTAATTATGGCTAAGGTTTAGTTTTA
1 TTGTAATTATGGCTAAGGTTTAGTTTTA
81742766 T
1 T
81742767 GTTAAGCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.04, G:0.21, T:0.51
Consensus pattern (28 bp):
TTGTAATTATGGCTAAGGTTTAGTTTTA
Found at i:81749706 original size:111 final size:111
Alignment explanation
Indices: 81749512--81749733 Score: 444
Period size: 111 Copynumber: 2.0 Consensus size: 111
81749502 GAACCTTAAG
81749512 AACACTTGCTCACCTACGTGGTGCTTAATATCTCGTTGTTTTAAATAATCATAGGATTTTTGTTT
1 AACACTTGCTCACCTACGTGGTGCTTAATATCTCGTTGTTTTAAATAATCATAGGATTTTTGTTT
81749577 ATTTAAAGTAGTCTTCAGTTGTTTGCATATCATTCTTACCTATTCC
66 ATTTAAAGTAGTCTTCAGTTGTTTGCATATCATTCTTACCTATTCC
81749623 AACACTTGCTCACCTACGTGGTGCTTAATATCTCGTTGTTTTAAATAATCATAGGATTTTTGTTT
1 AACACTTGCTCACCTACGTGGTGCTTAATATCTCGTTGTTTTAAATAATCATAGGATTTTTGTTT
81749688 ATTTAAAGTAGTCTTCAGTTGTTTGCATATCATTCTTACCTATTCC
66 ATTTAAAGTAGTCTTCAGTTGTTTGCATATCATTCTTACCTATTCC
81749734 TCTATTTTGT
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.44
Consensus pattern (111 bp):
AACACTTGCTCACCTACGTGGTGCTTAATATCTCGTTGTTTTAAATAATCATAGGATTTTTGTTT
ATTTAAAGTAGTCTTCAGTTGTTTGCATATCATTCTTACCTATTCC
Found at i:81763327 original size:40 final size:40
Alignment explanation
Indices: 81763265--81763484 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
81763255 ATTTGGATTG
81763265 ATAACCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
81763303 ATATTCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
81763343 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
81763383 ATAACCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
81763423 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
81763463 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
81763485 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 12 0.07
39 16 0.10
40 136 0.83
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:81763938 original size:25 final size:25
Alignment explanation
Indices: 81763893--81763954 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
81763883 TATCAAAGCC
* **
81763893 CTTTTGGTACACTTTTGGTTGAACA
1 CTTTTGGTACACTATCAGTTGAACA
** *
81763918 CTTTTGGTACACTATCAGTTGTGCC
1 CTTTTGGTACACTATCAGTTGAACA
81763943 CTTTTGGTACAC
1 CTTTTGGTACAC
81763955 ATGCCATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.42
Consensus pattern (25 bp):
CTTTTGGTACACTATCAGTTGAACA
Found at i:81764481 original size:40 final size:40
Alignment explanation
Indices: 81764401--81764620 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
81764391 AAACCAAGTA
* * *
81764401 CCTTCGGG-TTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
81764439 CCTTCGGGACTTAGCCCGGTTACAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
81764479 CCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
81764519 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
81764559 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
81764599 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
81764621 CAATCCGAAT
Statistics
Matches: 166, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 8 0.05
39 18 0.11
40 140 0.84
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:81766557 original size:2 final size:2
Alignment explanation
Indices: 81766550--81766588 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
81766540 TATGAATGTG
81766550 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81766589 GATGTTTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81769141 original size:27 final size:26
Alignment explanation
Indices: 81769104--81769211 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
81769094 AACATGGCTG
*
81769104 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
81769130 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
81769157 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * * *
81769184 CAAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGACAGAGCCA
81769211 C
1 C
81769212 TTAACAGAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 12 0.16
27 53 0.73
28 8 0.11
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:81769202 original size:54 final size:53
Alignment explanation
Indices: 81769104--81769211 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 53
81769094 AACATGGCTG
* * * * *
81769104 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACAAGAAACAGATAATGTGGCAAAGCCA
* *
81769157 CCAGAACAGATATTTGTGGCATAGCCACAAGAAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACAAGAAACAGATAATGTGGCAAAGCCA
81769211 C
1 C
81769212 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 12 0.26
54 35 0.74
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACAAGAAACAGATAATGTGGCAAAGCCA
Found at i:81769596 original size:26 final size:27
Alignment explanation
Indices: 81769554--81769616 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 27
81769544 GTGACAAAGA
81769554 CACCAGATACAGATA-TTGTGGCAGAGC
1 CACCAGA-ACAGATATTTGTGGCAGAGC
*
81769581 CACCAGAACAGATATTTGTGGCATAGC
1 CACCAGAACAGATATTTGTGGCAGAGC
81769608 CACCAGAAC
1 CACCAGAAC
81769617 GCTTCCTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 7 0.21
27 27 0.79
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.17
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGAGC
Found at i:81769889 original size:54 final size:54
Alignment explanation
Indices: 81769831--81769935 Score: 133
Period size: 54 Copynumber: 1.9 Consensus size: 54
81769821 AACACCCTAG
*
81769831 GGGTAAAATGGTAATTTTATCCC-ACAAGGGTATCTT-GGTAATTCTACCCTACAA
1 GGGTAAAATGGTAATTTTA-CCCTACAAGGGTAT-TTCAGTAATTCTACCCTACAA
*** *
81769885 GGGTATTTTGGTATTTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
1 GGGTAAAATGGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
81769936 TAGCGGTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
53 5 0.11
54 39 0.89
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (54 bp):
GGGTAAAATGGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAA
Found at i:81769943 original size:27 final size:27
Alignment explanation
Indices: 81769841--81769954 Score: 117
Period size: 27 Copynumber: 4.2 Consensus size: 27
81769831 GGGTAAAATG
* *
81769841 GTAATTTTATCCC-ACAAGGGTATCTT-G
1 GTAATTCTA-CCCTACAAGGGTAT-TTCA
**
81769868 GTAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
81769895 GTATTTTTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81769922 GTAATTCTACCCTA-TAGCGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
81769949 GTAATT
1 GTAATT
81769955 TGGTAAACTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 7 0.09
27 69 0.91
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:81772163 original size:27 final size:26
Alignment explanation
Indices: 81772125--81772232 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
81772115 AGCATGGCTG
* *
81772125 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
81772151 CCAGATATAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
81772178 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
81772205 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
81772232 C
1 C
81772233 TTAACAGAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 11 0.15
27 53 0.74
28 8 0.11
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:81772621 original size:27 final size:26
Alignment explanation
Indices: 81772556--81772638 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
81772546 TTGATCGATC
* * *
81772556 AACAGATATTGTGACAAAGTCACAAG
1 AACAGATATTGTGGCAAAGCCACCAG
* *
81772582 ATACAGATATTGTGGCAGAGGCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
81772609 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
81772636 AAC
1 AAC
81772639 GCTTCCTCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:81772947 original size:27 final size:27
Alignment explanation
Indices: 81772863--81772949 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
81772853 GGGTAAAATG
* *
81772863 GTAATTTTACCCCACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81772889 GCTATTTCTACCCTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
81772917 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
81772944 GTAATT
1 GTAATT
81772950 TGGTAAACTA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.02
27 51 0.96
28 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:81775720 original size:40 final size:40
Alignment explanation
Indices: 81775676--81775859 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
81775666 GCTACTCATT
*
81775676 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
81775716 CAAATGCCTTCGGGACTTAACCTGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
81775756 C-AATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
81775794 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTTACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
81775835 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81775860 CATCATTCGA
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 23 0.19
39 21 0.17
40 65 0.53
41 13 0.11
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81775821 original size:78 final size:80
Alignment explanation
Indices: 81775678--81775857 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 80
81775668 TACTCATTCA
* **
81775678 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGGAT
*
81775743 TTAATAAC-TCGCAC
66 TTAATAACTTAGCAC
*
81775757 AATGCCTTCGGG-CTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC-G
1 AATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCTG
* *
81775818 GATTTAGTTACTTAGCAC
63 GATTTAATAACTTAGCAC
* *
81775836 AAAGCCTTTGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
81775858 GACATCATTC
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
77 3 0.03
78 44 0.51
79 32 0.37
80 8 0.09
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGGAT
TTAATAACTTAGCAC
Found at i:81778567 original size:26 final size:27
Alignment explanation
Indices: 81778538--81778614 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
81778528 GTCACCAGAT
81778538 ACAGATATTGTGGCAAAGCCACTAG-A
1 ACAGATATTGTGGCAAAGCCACTAGAA
* * * *
81778564 ACAGATATTTATGGTATAGCCACCAGAA
1 ACAGATA-TTGTGGCAAAGCCACTAGAA
*
81778592 ACAGATAATGTGGCAAAGCCACT
1 ACAGATATTGTGGCAAAGCCACT
81778615 TAACAGAATA
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
26 7 0.17
27 25 0.62
28 8 0.20
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (27 bp):
ACAGATATTGTGGCAAAGCCACTAGAA
Found at i:81778819 original size:22 final size:22
Alignment explanation
Indices: 81778771--81778829 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
81778761 GTAAATACGT
*
81778771 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
81778793 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
81778815 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
81778830 CGATAACGAG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:81778976 original size:27 final size:26
Alignment explanation
Indices: 81778937--81779018 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 26
81778927 TCGATCGGTC
* *
81778937 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
*
81778963 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
81778990 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
81779017 AA
1 AA
81779019 TGCTTCCTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:81780841 original size:39 final size:39
Alignment explanation
Indices: 81780787--81780949 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
81780777 TGTGTATGAA
*
81780787 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
81780826 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81780865 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81780904 TGTGCGAGTTGTGATATCCGGGTTAAGTCCTGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
81780944 TGTGCG
1 TGTGCG
81780950 GGTTACCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81782535 original size:27 final size:27
Alignment explanation
Indices: 81782430--81782545 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 27
81782420 AGGGGTAAAA
* * *
81782430 TGGTAATTTTACCCCACAAGGGTATCT
1 TGGTAATTCTACCCTACAAGGGTATTT
*
81782457 CGGTAATTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* * *
81782484 CGGTATTTCTACCCTACAATGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
*
81782511 TGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
*
81782538 TAGTAATT
1 TGGTAATT
81782546 TGGTAAACTA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAAGGGTATTT
Found at i:81783575 original size:24 final size:23
Alignment explanation
Indices: 81783521--81783566 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
81783511 ATGGCTAGGT
81783521 AAAATTTTCAAGTTATGCATTAA
1 AAAATTTTCAAGTTATGCATTAA
*
81783544 AAAATTTTTAAGTTATGCATTAA
1 AAAATTTTCAAGTTATGCATTAA
81783567 GGGTATTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (23 bp):
AAAATTTTCAAGTTATGCATTAA
Found at i:81793996 original size:27 final size:28
Alignment explanation
Indices: 81793966--81794035 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
81793956 ATAGTGAATC
*
81793966 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
81793993 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
81794021 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81794036 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:81801872 original size:27 final size:28
Alignment explanation
Indices: 81801842--81801911 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
81801832 ATAGTGAATC
*
81801842 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
81801869 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
81801897 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81801912 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:81805904 original size:29 final size:29
Alignment explanation
Indices: 81805871--81806027 Score: 153
Period size: 29 Copynumber: 5.5 Consensus size: 29
81805861 GTGACGAGAT
81805871 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81805900 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81805929 ---CACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
81805955 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
81805984 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
81806013 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81806028 GAAATCGAGT
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
26 26 0.25
28 2 0.02
29 77 0.73
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:81805939 original size:26 final size:26
Alignment explanation
Indices: 81805874--81805955 Score: 137
Period size: 26 Copynumber: 3.0 Consensus size: 26
81805864 ACGAGATTGG
81805874 CACTAAGTGTGCATGCTGGAAATATA
1 CACTAAGTGTGCATGCTGGAAATATA
81805900 TGGCACTAAGTGTGCATGCTGGAAATATA
1 ---CACTAAGTGTGCATGCTGGAAATATA
81805929 CACTAAGTGTGCATGCTGGAAATATA
1 CACTAAGTGTGCATGCTGGAAATATA
81805955 C
1 C
81805956 GGCACTGGGT
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
26 27 0.51
29 26 0.49
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
CACTAAGTGTGCATGCTGGAAATATA
Found at i:81813988 original size:29 final size:29
Alignment explanation
Indices: 81813955--81814114 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
81813945 GTGACGAGAT
81813955 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81813984 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81814013 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
81814042 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
81814071 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
81814100 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81814115 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:81822119 original size:40 final size:40
Alignment explanation
Indices: 81822064--81822232 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
81822054 TGAATGATAC
* *
81822064 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* * *
81822104 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATCATAT
* * * *
81822144 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
* * * *
81822184 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GATCATAT
81822225 CC-GGCTAA
1 CCGGGCTAA
81822233 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 97 0.92
41 8 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATCATAT
Found at i:81822231 original size:80 final size:80
Alignment explanation
Indices: 81822064--81822232 Score: 216
Period size: 80 Copynumber: 2.1 Consensus size: 80
81822054 TGAATGATAC
* * * *
81822064 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATCATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
81822129 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * *
81822144 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
**
81822208 GTGCTTGTGGATTATAT
65 GTGCGAGTGG-TTATAT
81822225 CC-GGCTAA
1 CCGGGCTAA
81822233 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 66 0.86
81 11 0.14
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:81823753 original size:17 final size:17
Alignment explanation
Indices: 81823731--81823766 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
81823721 GGATACTTGA
81823731 TGTTTAGAGACAGAGTT
1 TGTTTAGAGACAGAGTT
81823748 TGTTTAGAGACAGAGTT
1 TGTTTAGAGACAGAGTT
81823765 TG
1 TG
81823767 CGTACTGAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.36
Consensus pattern (17 bp):
TGTTTAGAGACAGAGTT
Found at i:81826179 original size:31 final size:31
Alignment explanation
Indices: 81826144--81826207 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
81826134 TGAATGTATG
81826144 ATAATTGGTTATAGTGATGGCATGAAAATCC
1 ATAATTGGTTATAGTGATGGCATGAAAATCC
81826175 ATAATTGGTTATAGTGATGGCATGAAAATCC
1 ATAATTGGTTATAGTGATGGCATGAAAATCC
81826206 AT
1 AT
81826208 GAAGTGTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (31 bp):
ATAATTGGTTATAGTGATGGCATGAAAATCC
Found at i:81830338 original size:43 final size:43
Alignment explanation
Indices: 81830194--81830338 Score: 107
Period size: 43 Copynumber: 3.4 Consensus size: 43
81830184 TCCCAGATAT
* * * * * *
81830194 GGTCTTACATGTTAT-CACATATCGATGCCATTGTCCCAAACAG
1 GGTCTTACATGTAATCCA-ATAACAATGCAAATGTCCCAAACAC
* * * * *
81830237 GGTCTTACATGAAATCGATTAACGATGCCAATGTCCCAGAA-AC
1 GGTCTTACATGTAATCCAATAACAATGCAAATGTCCCA-AACAC
** *
81830280 GGTCTTACACATAATCTCAAT-ACAATGCAAATGTCCCAAACAT
1 GGTCTTACATGTAATC-CAATAACAATGCAAATGTCCCAAACAC
*
81830323 GGTCTTATATGTAATC
1 GGTCTTACATGTAATC
81830339 ATATCTCGGT
Statistics
Matches: 80, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
42 2 0.03
43 73 0.91
44 5 0.06
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAATCCAATAACAATGCAAATGTCCCAAACAC
Found at i:81833826 original size:23 final size:24
Alignment explanation
Indices: 81833783--81833827 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
81833773 ATGCTCAGTT
*
81833783 TCATCTCTCGAATAAATCAAAATA
1 TCATCTATCGAATAAATCAAAATA
81833807 TCATCTAT-GAATACAA-CAAAA
1 TCATCTATCGAATA-AATCAAAA
81833828 AATAGATCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (24 bp):
TCATCTATCGAATAAATCAAAATA
Found at i:81845524 original size:40 final size:40
Alignment explanation
Indices: 81845416--81845625 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
81845406 CGGGATTTAA
* * * * *
81845416 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
81845456 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
81845496 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
81845536 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
81845576 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
81845616 CCGGATATAT
1 CCGGATATAT
81845626 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:81853658 original size:40 final size:40
Alignment explanation
Indices: 81853550--81853759 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
81853540 CGGGATTTAA
* * * * *
81853550 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
81853590 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
81853630 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
81853670 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
81853710 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
81853750 CCGGATATAT
1 CCGGATATAT
81853760 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:81861305 original size:46 final size:46
Alignment explanation
Indices: 81861252--81861427 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
81861242 TTGTTGAGCA
*
81861252 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
81861298 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
*
81861345 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
81861391 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81861428 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 70 0.66
47 36 0.34
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81861408 original size:93 final size:93
Alignment explanation
Indices: 81861249--81861420 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
81861239 GGATTGTTGA
* * *
81861249 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
81861314 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
81861342 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
81861407 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81861421 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:81875078 original size:18 final size:18
Alignment explanation
Indices: 81875057--81875140 Score: 60
Period size: 20 Copynumber: 4.4 Consensus size: 18
81875047 AAAATGTAAA
81875057 AAAAATCATTAAAATTAT
1 AAAAATCATTAAAATTAT
* * *
81875075 AAAAGAACTTTAAATTTTAT
1 AAAA-ATCATTAAA-ATTAT
*
81875095 AAAAATTATTAAAAATTCATT
1 AAAAATCATT-AAAATT-A-T
* **
81875116 AAAAATCAATAATTTTAT
1 AAAAATCATTAAAATTAT
81875134 AAAAATC
1 AAAAATC
81875141 TATAAAAAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
18 12 0.24
19 13 0.26
20 16 0.32
21 9 0.18
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.36
Consensus pattern (18 bp):
AAAAATCATTAAAATTAT
Found at i:81875357 original size:21 final size:20
Alignment explanation
Indices: 81875337--81875374 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81875327 AAAAAATAAT
81875337 TTAATTTTT-ATGATTTTTAA
1 TTAATTTTTAAT-ATTTTTAA
81875357 TTAATTTTTAATATTTTT
1 TTAATTTTTAATATTTTT
81875375 TATAAAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTAATTTTTAATATTTTTAA
Found at i:81875496 original size:20 final size:19
Alignment explanation
Indices: 81875441--81875497 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
81875431 AAATTCTATA
81875441 AAATTTTATGATTTTTAAT
1 AAATTTTATGATTTTTAAT
* *
81875460 TAATTTCTAAT-AATTTTAAT
1 AAATTT-T-ATGATTTTTAAT
81875480 AAATTTTGATGATTTTTA
1 AAATTTT-ATGATTTTTA
81875498 TAATGGTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
19 8 0.27
20 20 0.67
21 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (19 bp):
AAATTTTATGATTTTTAAT
Found at i:81877005 original size:40 final size:40
Alignment explanation
Indices: 81876908--81877089 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 40
81876898 GAATCACGTA
* * *
81876908 CCTTCGGAATTTAA-CCGGATATAATGACTCGCTCAAATG
1 CCTTCGGGACTTAACCCGGATATAATGACTCGCACAAATG
* * * *
81876947 CCTTCGGGAC-GAAGCCCGGTTATAGTGACTCGCACAATTG
1 CCTTCGGGACTTAA-CCCGGATATAATGACTCGCACAAATG
* * ** *
81876987 CCTTCGGGTCTTAACCCGGATTTAACAACTTGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAATGACTCGCACAAATG
* * * * *
81877027 CCTTCGGGTCTTAGCCCGGATATAATTACTAGCACAATTG
1 CCTTCGGGACTTAACCCGGATATAATGACTCGCACAAATG
*
81877067 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAACCCGGATAT
81877090 CATTCCAATG
Statistics
Matches: 117, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
38 2 0.02
39 8 0.07
40 105 0.90
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAATGACTCGCACAAATG
Found at i:81879365 original size:6 final size:6
Alignment explanation
Indices: 81879356--81879430 Score: 71
Period size: 6 Copynumber: 12.7 Consensus size: 6
81879346 TTCAATTTCA
* * * ** **
81879356 ATTTTC ATTTTG ATTCTA ATTTTG ATTTTG ATTTCA ATTTCA ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
*
81879404 ATTTTG ATTTTG ATTTTG GTTTT- ATTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTT
81879431 GTTATTAATG
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
5 3 0.05
6 55 0.95
ACGTcount: A:0.20, C:0.05, G:0.11, T:0.64
Consensus pattern (6 bp):
ATTTTG
Found at i:81879767 original size:62 final size:61
Alignment explanation
Indices: 81879670--81879799 Score: 224
Period size: 62 Copynumber: 2.1 Consensus size: 61
81879660 GTTAAAGTGT
** *
81879670 TTGGTTATTGTCTACCATGTGCATGACAGAAATGGTTGTGTTTGTATTAAATTATTTTTGTA
1 TTGGTTACCGTCTACCATGTGCATGACAGAAATGGTTATGTTTGTATTAAATTA-TTTTGTA
81879732 TTGGTTACCGTCTACCATGTGCATGACAGAAATGGTTATGTTTGTATTAAATTATTTTGTA
1 TTGGTTACCGTCTACCATGTGCATGACAGAAATGGTTATGTTTGTATTAAATTATTTTGTA
81879793 TTGGTTA
1 TTGGTTA
81879800 TTGTTTGACA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
61 14 0.22
62 51 0.78
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (61 bp):
TTGGTTACCGTCTACCATGTGCATGACAGAAATGGTTATGTTTGTATTAAATTATTTTGTA
Found at i:81879930 original size:24 final size:24
Alignment explanation
Indices: 81879898--81879948 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
81879888 TTTAATGAGA
*
81879898 ATGAAGAAGAAATGTCTGGTAGTG
1 ATGAAGAAGAAATGTCTGATAGTG
*
81879922 ATGAAGAAGAAATGTTTGATAGTG
1 ATGAAGAAGAAATGTCTGATAGTG
81879946 ATG
1 ATG
81879949 TGTCTGGTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.02, G:0.31, T:0.27
Consensus pattern (24 bp):
ATGAAGAAGAAATGTCTGATAGTG
Found at i:81881810 original size:96 final size:96
Alignment explanation
Indices: 81881683--81881898 Score: 312
Period size: 96 Copynumber: 2.3 Consensus size: 96
81881673 GTGTGTGTGT
* * * *
81881683 ATGACTATTTTTT--TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTTAACATAC
1 ATGAGTATTTTTTAATAATATGCATACAGTGATTGTTGATGTATATGACTATTTTTTTAACATAC
81881746 ATGTTGTTGACTAT-TTCTTAATATGCATGCA
66 ATGTTGTTGACTATCTT-TTAATATGCATGCA
* * * *
81881777 GTGAGTATTTTTTAATAATATGCATACAGTGATTGTTGATTTATATGACTGTTTTTTTAATATAC
1 ATGAGTATTTTTTAATAATATGCATACAGTGATTGTTGATGTATATGACTATTTTTTTAACATAC
*
81881842 ATGTTGTTGACTATCTTTTAATATGCATGTA
66 ATGTTGTTGACTATCTTTTAATATGCATGCA
81881873 ATGAGTATTTTTTTAATAATATGCAT
1 ATGAGTA-TTTTTTAATAATATGCAT
81881899 GTAGTGTCTT
Statistics
Matches: 108, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
94 11 0.10
96 77 0.71
97 20 0.19
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (96 bp):
ATGAGTATTTTTTAATAATATGCATACAGTGATTGTTGATGTATATGACTATTTTTTTAACATAC
ATGTTGTTGACTATCTTTTAATATGCATGCA
Found at i:81882678 original size:21 final size:21
Alignment explanation
Indices: 81882652--81882703 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
81882642 CAATAGTCTA
*
81882652 CCCCAACTCAGT-TACAAACTG
1 CCCCAACTCA-TCAACAAACTG
*
81882673 CCCCAACTCATCAACAAGCTG
1 CCCCAACTCATCAACAAACTG
81882694 CCCCAACTCA
1 CCCCAACTCA
81882704 CCAAAAAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.33, C:0.44, G:0.08, T:0.15
Consensus pattern (21 bp):
CCCCAACTCATCAACAAACTG
Found at i:81882723 original size:24 final size:21
Alignment explanation
Indices: 81882670--81882715 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
81882660 CAGTTACAAA
* *
81882670 CTGCCCCAACTCATCAACAAG
1 CTGCCCCAACTCACCAAAAAG
81882691 CTGCCCCAACTCACCAAAAAG
1 CTGCCCCAACTCACCAAAAAG
81882712 CTGC
1 CTGC
81882716 TGCCCCAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.43, G:0.11, T:0.13
Consensus pattern (21 bp):
CTGCCCCAACTCACCAAAAAG
Found at i:81883440 original size:36 final size:36
Alignment explanation
Indices: 81883400--81883477 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
81883390 GGTTAGCCAT
*
81883400 ATATACCAACAGCCATGTATAACAATATAAACAACA
1 ATATACCAACAGCCATGTATAACAACATAAACAACA
*
81883436 ATATACCAACAGCCATGTATAACAACGTAAACAACA
1 ATATACCAACAGCCATGTATAACAACATAAACAACA
81883472 ATATAC
1 ATATAC
81883478 TAGCAACAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.51, C:0.23, G:0.06, T:0.19
Consensus pattern (36 bp):
ATATACCAACAGCCATGTATAACAACATAAACAACA
Found at i:81883485 original size:39 final size:38
Alignment explanation
Indices: 81883398--81883485 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 38
81883388 CTGGTTAGCC
*
81883398 ATATA-TACCAACAGCCATGTATAACAATATAAACAACA
1 ATATACTA-CAACAGCCATGTATAACAACATAAACAACA
*
81883436 ATATAC--CAACAGCCATGTATAACAACGTAAACAACA
1 ATATACTACAACAGCCATGTATAACAACATAAACAACA
81883472 ATATACTAGCAACA
1 ATATACTA-CAACA
81883486 ATATTACATA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
36 34 0.77
38 5 0.11
39 5 0.11
ACGTcount: A:0.51, C:0.23, G:0.07, T:0.19
Consensus pattern (38 bp):
ATATACTACAACAGCCATGTATAACAACATAAACAACA
Found at i:81883857 original size:15 final size:15
Alignment explanation
Indices: 81883837--81883866 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81883827 TAGGCATCTC
81883837 CATTTTTCCTCTTCT
1 CATTTTTCCTCTTCT
*
81883852 CATTTTTCTTCTTCT
1 CATTTTTCCTCTTCT
81883867 TCTTATCTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.63
Consensus pattern (15 bp):
CATTTTTCCTCTTCT
Found at i:81885464 original size:6 final size:6
Alignment explanation
Indices: 81885453--81885480 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
81885443 TCTTCCATCA
81885453 TTTCTT TTTCTT TTTCTT TTTCTT TTTC
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTC
81885481 AGTTTTATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:81886209 original size:15 final size:15
Alignment explanation
Indices: 81886191--81886222 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81886181 TCTGATTTCC
*
81886191 ATGATCCTGATGATG
1 ATGATCATGATGATG
81886206 ATGATCATGATGATG
1 ATGATCATGATGATG
81886221 AT
1 AT
81886223 CAAAACAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34
Consensus pattern (15 bp):
ATGATCATGATGATG
Found at i:81886215 original size:12 final size:12
Alignment explanation
Indices: 81886200--81886224 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81886190 CATGATCCTG
81886200 ATGATGATGATC
1 ATGATGATGATC
81886212 ATGATGATGATC
1 ATGATGATGATC
81886224 A
1 A
81886225 AAACAGTCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (12 bp):
ATGATGATGATC
Found at i:81890189 original size:2 final size:2
Alignment explanation
Indices: 81890184--81890226 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
81890174 AAGTACATAA
81890184 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81890226 A
1 A
81890227 AAACATGACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81890362 original size:12 final size:12
Alignment explanation
Indices: 81890250--81890418 Score: 75
Period size: 12 Copynumber: 14.2 Consensus size: 12
81890240 TAAAAATGAC
* *
81890250 AATGATAACAAA
1 AATGATAATAAT
* *
81890262 AACGATAGTAAT
1 AATGATAATAAT
* *
81890274 AATAATAATATT
1 AATGATAATAAT
* * *
81890286 GATAATAATACT
1 AATGATAATAAT
81890298 AATGATAATAAT
1 AATGATAATAAT
81890310 AA-GAGTAATAAT
1 AATGA-TAATAAT
*
81890322 AA-GAATATTAAT
1 AATG-ATAATAAT
*
81890334 ATTAGTATTAATAAT
1 AAT-G-A-TAATAAT
81890349 AATGATAATAAT
1 AATGATAATAAT
*
81890361 AATAGAAAATAA-
1 AAT-GATAATAAT
81890373 AA--ATAA-AAT
1 AATGATAATAAT
*
81890382 AAT-ATAGTAAT
1 AATGATAATAAT
* * * *
81890393 AGTAATAAAAAA
1 AATGATAATAAT
81890405 AAT-ATAATAAT
1 AATGATAATAAT
81890416 AAT
1 AAT
81890419 AATAGTAATT
Statistics
Matches: 119, Mismatches: 28, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
8 2 0.02
9 5 0.04
10 3 0.03
11 16 0.13
12 73 0.61
13 9 0.08
14 3 0.03
15 8 0.07
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (12 bp):
AATGATAATAAT
Found at i:81890467 original size:3 final size:3
Alignment explanation
Indices: 81890270--81890451 Score: 122
Period size: 3 Copynumber: 62.0 Consensus size: 3
81890260 AAAACGATAG
* * * * * *
81890270 TAA TAA TAA TAA TAT TGA TAA TAA TAC TAA TGA TAA TAA TAA GAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
81890318 TAA TAA GAA TAT TAA TAT TAG TAT TAA TAA TAA TGA TAA TAA TAA TAGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * * * *
81890367 AAA TAA AAA TAA -AA TAA T-A TAG TAA TAG TAA TAA AAA AAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
81890412 TAA TAA TAA TAG TAA T-T TAA T-A CAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
81890452 AAGGGTGATA
Statistics
Matches: 133, Mismatches: 40, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
2 8 0.06
3 123 0.92
4 2 0.02
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:81894927 original size:15 final size:15
Alignment explanation
Indices: 81894892--81894968 Score: 70
Period size: 15 Copynumber: 5.3 Consensus size: 15
81894882 TGTGGGAGCG
**
81894892 GCTGTTGCTGCTGAG
1 GCTGTTGCTGCTGCT
81894907 GCTGTTGCTGCTGCT
1 GCTGTTGCTGCTGCT
* *
81894922 GTTGTTGCAGCTG-T
1 GCTGTTGCTGCTGCT
**
81894936 G--GGAGCTGCTGCT
1 GCTGTTGCTGCTGCT
*
81894949 GCTGCTGCTGCTGCT
1 GCTGTTGCTGCTGCT
81894964 GCTGT
1 GCTGT
81894969 GGCATCTGTT
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
12 7 0.14
13 2 0.04
14 2 0.04
15 38 0.78
ACGTcount: A:0.04, C:0.23, G:0.38, T:0.35
Consensus pattern (15 bp):
GCTGTTGCTGCTGCT
Found at i:81894943 original size:27 final size:27
Alignment explanation
Indices: 81894838--81894961 Score: 82
Period size: 24 Copynumber: 4.8 Consensus size: 27
81894828 TGCTGCTGCT
* *
81894838 GCTGCTGCTGTTGTTGCAGCTGAGGGA
1 GCTGCTGCTGCTGTTGCAGCTGTGGGA
* **
81894865 G-T--TGTTGCTGTTGCAAATGTGGGA
1 GCTGCTGCTGCTGTTGCAGCTGTGGGA
* * * *
81894889 GCGGCTGTTGCTGCTG-AGGCTGT---T
1 GCTGCTGCTGCTGTTGCA-GCTGTGGGA
*
81894913 GCTGCTGCTGTTGTTGCAGCTGTGGGA
1 GCTGCTGCTGCTGTTGCAGCTGTGGGA
* *
81894940 GCTGCTGCTGCTGCTGCTGCTG
1 GCTGCTGCTGCTGTTGCAGCTG
81894962 CTGCTGTGGC
Statistics
Matches: 71, Mismatches: 18, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
24 35 0.49
25 1 0.01
26 2 0.03
27 33 0.46
ACGTcount: A:0.08, C:0.19, G:0.40, T:0.33
Consensus pattern (27 bp):
GCTGCTGCTGCTGTTGCAGCTGTGGGA
Found at i:81894946 original size:3 final size:3
Alignment explanation
Indices: 81894940--81894967 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
81894930 AGCTGTGGGA
81894940 GCT GCT GCT GCT GCT GCT GCT GCT GCT G
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT G
81894968 TGGCATCTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.36, T:0.32
Consensus pattern (3 bp):
GCT
Found at i:81909644 original size:15 final size:15
Alignment explanation
Indices: 81909616--81909649 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
81909606 GCGATCAATT
81909616 GAATTAAATCGAATC
1 GAATTAAATCGAATC
* *
81909631 GAATTGAATTGAATC
1 GAATTAAATCGAATC
81909646 GAAT
1 GAAT
81909650 GAAAAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.09, G:0.18, T:0.29
Consensus pattern (15 bp):
GAATTAAATCGAATC
Found at i:81919839 original size:10 final size:10
Alignment explanation
Indices: 81919804--81919849 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
81919794 TATAGTCTGA
81919804 CACATATCAAT
1 CACATAT-AAT
*
81919815 CACATATAAG
1 CACATATAAT
81919825 CACATATAAT
1 CACATATAAT
* *
81919835 TACATACAAT
1 CACATATAAT
81919845 CACAT
1 CACAT
81919850 TTAGTCATAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 23 0.77
11 7 0.23
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (10 bp):
CACATATAAT
Found at i:81923780 original size:41 final size:41
Alignment explanation
Indices: 81923735--81923852 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81923725 TGAAAGATAA
81923735 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81923776 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81923806 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81923847 ATGTAG
1 ATGTAG
81923853 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81923791 original size:71 final size:71
Alignment explanation
Indices: 81923703--81923866 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81923693 GAGATGTATC
81923703 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81923768 AGGACA
66 AGGACA
81923774 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81923839 AGGACA
66 AGGACA
81923845 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81923867 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81930892 original size:41 final size:41
Alignment explanation
Indices: 81930847--81930964 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81930837 TGAAAGATAA
81930847 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81930888 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81930918 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81930959 ATGTAG
1 ATGTAG
81930965 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81930903 original size:71 final size:71
Alignment explanation
Indices: 81930815--81930978 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81930805 GAGATGTATC
81930815 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81930880 AGGACA
66 AGGACA
81930886 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81930951 AGGACA
66 AGGACA
81930957 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81930979 AGATGAGTGG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81935997 original size:46 final size:46
Alignment explanation
Indices: 81935932--81936025 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
81935922 TATGCATTTT
81935932 TTTTATTAATAGTAACAGAGCATTATAATGAATTATAAACCATACA
1 TTTTATTAATAGTAACAGAGCATTATAATGAATTATAAACCATACA
81935978 TTTTATTAATAGTAACAGAGCATTATAATGAATTATAAACCATACA
1 TTTTATTAATAGTAACAGAGCATTATAATGAATTATAAACCATACA
81936024 TT
1 TT
81936026 CACTTTGTGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (46 bp):
TTTTATTAATAGTAACAGAGCATTATAATGAATTATAAACCATACA
Found at i:81937548 original size:20 final size:18
Alignment explanation
Indices: 81937505--81937548 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
81937495 TACTTATCAA
*
81937505 CTCA-ATCCATGAAAATT
1 CTCATATCCATGAAAAAT
81937522 CTCATATCCATGAAAACAT
1 CTCATATCCATGAAAA-AT
81937541 CATCATAT
1 C-TCATAT
81937549 GCATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 11 0.48
19 2 0.09
20 6 0.26
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (18 bp):
CTCATATCCATGAAAAAT
Found at i:81939746 original size:10 final size:11
Alignment explanation
Indices: 81939700--81939746 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
81939690 TATATTCCGA
81939700 CACATATCAAT
1 CACATATCAAT
* *
81939711 CACATATAAAG
1 CACATATCAAT
81939722 CACATAT-AAT
1 CACATATCAAT
*
81939732 TACATA-CAAT
1 CACATATCAAT
81939742 CACAT
1 CACAT
81939747 TTAGTCACAG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 14 0.47
11 16 0.53
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (11 bp):
CACATATCAAT
Found at i:81946375 original size:40 final size:39
Alignment explanation
Indices: 81946331--81946430 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 39
81946321 ACAATTCGAA
81946331 TATATATGGCACTTAGTGTGAAAGTCAAGAAA-ACTTCAGC
1 TATATATGGCACTTAGTGTGAAAGTC--GAAAGACTTCAGC
* ** * *
81946371 TATATTTGGCACTTAGTGTGCGATTCGAAATGACTTCGGC
1 TATATATGGCACTTAGTGTGAAAGTCGAAA-GACTTCAGC
*
81946411 TGTATATGGCACTTAGTGTG
1 TATATATGGCACTTAGTGTG
81946431 TGAGACTGAG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
38 4 0.08
40 47 0.92
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (39 bp):
TATATATGGCACTTAGTGTGAAAGTCGAAAGACTTCAGC
Found at i:81946463 original size:41 final size:41
Alignment explanation
Indices: 81946364--81946519 Score: 131
Period size: 41 Copynumber: 3.8 Consensus size: 41
81946354 GTCAAGAAAA
* ** *
81946364 CTTCAGCTATATTTGGCACTTAGTGTGCGA-TTCGA-AAT-G
1 CTTCGGCTATATAAGGCACTTAGTGTGCGAGAT-GATAATAG
* * * *
81946403 ACTTCGGCTGTATATGGCACTTAGTGTGTGAGACTGA-GATAG
1 -CTTCGGCTATATAAGGCACTTAGTGTGCGAGA-TGATAATAG
* * *
81946445 CTTCGGCTATGTAAGGCACTTAGTGTGCAAGATTATAATAG
1 CTTCGGCTATATAAGGCACTTAGTGTGCGAGATGATAATAG
* *
81946486 CTTCGGCTATTTATGGGCACTTAGTGTGCGAGAT
1 CTTCGGCTATATA-AGGCACTTAGTGTGCGAGAT
81946520 ATCGAGTATT
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
40 28 0.29
41 47 0.49
42 20 0.21
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (41 bp):
CTTCGGCTATATAAGGCACTTAGTGTGCGAGATGATAATAG
Found at i:81946514 original size:42 final size:41
Alignment explanation
Indices: 81946441--81946519 Score: 122
Period size: 42 Copynumber: 1.9 Consensus size: 41
81946431 TGAGACTGAG
81946441 ATAGCTTCGGCTATGTAAGGCACTTAGTGTGCAAGATTATA
1 ATAGCTTCGGCTATGTAAGGCACTTAGTGTGCAAGATTATA
* * *
81946482 ATAGCTTCGGCTATTTATGGGCACTTAGTGTGCGAGAT
1 ATAGCTTCGGCTATGTA-AGGCACTTAGTGTGCAAGAT
81946520 ATCGAGTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
41 16 0.47
42 18 0.53
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (41 bp):
ATAGCTTCGGCTATGTAAGGCACTTAGTGTGCAAGATTATA
Found at i:81955292 original size:14 final size:13
Alignment explanation
Indices: 81955272--81955303 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
81955262 AATATTTCAC
81955272 TTGTTCTTAATTA
1 TTGTTCTTAATTA
81955285 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
81955299 TTGTT
1 TTGTT
81955304 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:81963541 original size:14 final size:15
Alignment explanation
Indices: 81963522--81963551 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
81963512 ATATTTCACT
81963522 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
81963536 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
81963551 T
1 T
81963552 TTTGATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:81966091 original size:25 final size:23
Alignment explanation
Indices: 81966063--81966138 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 23
81966053 CCATTAAGAA
81966063 TCTTTAGATAATCTTCCACAAAGGC
1 TCTTTAGAT-AT-TTCCACAAAGGC
*
81966088 TCTTTAGATATTTTGCCACAAAGGT
1 TCTTTAGATA-TTT-CCACAAAGGC
* *
81966113 TCTTCAGATGATTCGCCACAAAGGC
1 TCTTTAGAT-ATT-TCCACAAAGGC
81966138 T
1 T
81966139 TGGTTTGGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
24 3 0.07
25 39 0.91
26 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (23 bp):
TCTTTAGATATTTCCACAAAGGC
Found at i:81969198 original size:17 final size:17
Alignment explanation
Indices: 81969178--81969218 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
81969168 AAATAGTTGC
81969178 AAAATTAACAATAA-AAT
1 AAAATT-ACAATAACAAT
81969195 AAAAGTTACAATAACAAT
1 AAAA-TTACAATAACAAT
81969213 AAAATT
1 AAAATT
81969219 GTAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAATTACAATAACAAT
Found at i:81969756 original size:18 final size:18
Alignment explanation
Indices: 81969733--81969772 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
81969723 AAAATGACTG
*
81969733 AAATACCC-CTATATGGTA
1 AAATACCCTC-ATAAGGTA
81969751 AAATACCCTCATAAGGTA
1 AAATACCCTCATAAGGTA
81969769 AAAT
1 AAAT
81969773 GACCGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.45, C:0.20, G:0.10, T:0.25
Consensus pattern (18 bp):
AAATACCCTCATAAGGTA
Found at i:81969800 original size:27 final size:27
Alignment explanation
Indices: 81969751--81969856 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 27
81969741 CTATATGGTA
81969751 AAATA-CCCTCATAAGG-TAAAATGACCG
1 AAATACCCCT-AT-AGGATAAAATGACCG
* *
81969778 AAATACCCCTATAGGATAGAATGACCA
1 AAATACCCCTATAGGATAAAATGACCG
* * *
81969805 AAATACCCCTGTAGGGTAAAATGACTG
1 AAATACCCCTATAGGATAAAATGACCG
* *
81969832 TAATACCCCTGTAAGG-TAAAATGAC
1 AAATACCCCTAT-AGGATAAAATGAC
81969857 AGATTTGTTC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.04
27 58 0.85
28 7 0.10
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (27 bp):
AAATACCCCTATAGGATAAAATGACCG
Found at i:81969921 original size:22 final size:24
Alignment explanation
Indices: 81969891--81969936 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
81969881 ATGTATTTGA
81969891 GCATGCCATGT-T-ATATATATGTT
1 GCATGCCATGTATGATAT-TATGTT
81969914 GCAT-CCATGTATGATATTATGTT
1 GCATGCCATGTATGATATTATGTT
81969937 ACATTGCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.29
23 11 0.52
24 4 0.19
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.43
Consensus pattern (24 bp):
GCATGCCATGTATGATATTATGTT
Found at i:81970227 original size:18 final size:18
Alignment explanation
Indices: 81970206--81970280 Score: 55
Period size: 18 Copynumber: 4.1 Consensus size: 18
81970196 TGCATACTGC
81970206 ATTGATTACTGTTACTAA
1 ATTGATTACTGTTACTAA
*
81970224 ATTGATCA-TGGTTAC-AA
1 ATTGATTACT-GTTACTAA
* **
81970241 CACTGATTACTGTTACTGC
1 -ATTGATTACTGTTACTAA
* *
81970260 ACTGATTAATGTTACTGAA
1 ATTGATTACTGTTACT-AA
81970279 AT
1 AT
81970281 GGGCTAAAGC
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
17 3 0.07
18 38 0.88
19 2 0.05
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (18 bp):
ATTGATTACTGTTACTAA
Found at i:81970363 original size:34 final size:34
Alignment explanation
Indices: 81970266--81970363 Score: 133
Period size: 34 Copynumber: 2.9 Consensus size: 34
81970256 CTGCACTGAT
* *
81970266 TAATGTTACTGAAATGGGCTAAAGCCCAAACCGC
1 TAATGTTACTGAAATGGGCTAAGGCCCAGACCGC
* *
81970300 TACTGTTACTGAAATGGGCTAAGGCCCAGACTGC
1 TAATGTTACTGAAATGGGCTAAGGCCCAGACCGC
* * *
81970334 TAATGTTACTGATATGGGCTTAGGTCCAGA
1 TAATGTTACTGAAATGGGCTAAGGCCCAGA
81970364 ATGTATTCGC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (34 bp):
TAATGTTACTGAAATGGGCTAAGGCCCAGACCGC
Found at i:81974544 original size:30 final size:29
Alignment explanation
Indices: 81974498--81974721 Score: 124
Period size: 29 Copynumber: 7.7 Consensus size: 29
81974488 TGTTTCTTGA
* *
81974498 CAGAGATAGCCACAAAGGTTGTCCTTTAG
1 CAGAGATAGCCACAAAGGCTATCCTTTAG
* *
81974527 TAGAGATTAGCCGCAAAGGCTATCCTTTAG
1 CAGAGA-TAGCCACAAAGGCTATCCTTTAG
* * *
81974557 CAAAGATAGCCACAAAGGCT-TCTTTTAA
1 CAGAGATAGCCACAAAGGCTATCCTTTAG
* * *
81974585 CATTCA-ATACTCACCACAAAGGCTTTCCTTTTAG
1 CA--GAGATA---GCCACAAAGGCTATCC-TTTAG
* * *
81974619 -AG-TATTGCCAAAAAGGC-ATTCCTTT--
1 CAGAGATAGCCACAAAGGCTA-TCCTTTAG
* * *
81974644 CAGAGATAGCCACGAAGGCGT-TCTTTTAA
1 CAGAGATAGCCACAAAGGC-TATCCTTTAG
* *
81974673 CAGAGATAGCCACAAAGACT-TCCTTATAA
1 CAGAGATAGCCACAAAGGCTATCCTT-TAG
*
81974702 TAGAGATAGCCACAAAGGCT
1 CAGAGATAGCCACAAAGGCT
81974722 CACTTATACA
Statistics
Matches: 150, Mismatches: 28, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
26 2 0.01
27 19 0.13
28 25 0.17
29 59 0.39
30 25 0.17
31 2 0.01
32 11 0.07
33 3 0.02
34 4 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (29 bp):
CAGAGATAGCCACAAAGGCTATCCTTTAG
Found at i:81974575 original size:29 final size:29
Alignment explanation
Indices: 81974501--81974576 Score: 98
Period size: 30 Copynumber: 2.6 Consensus size: 29
81974491 TTCTTGACAG
* * * *
81974501 AGATAGCCACAAAGGTTGTCCTTTAGTAG
1 AGATAGCCACAAAGGCTATCCTTTAGCAA
*
81974530 AGATTAGCCGCAAAGGCTATCCTTTAGCAA
1 AGA-TAGCCACAAAGGCTATCCTTTAGCAA
81974560 AGATAGCCACAAAGGCT
1 AGATAGCCACAAAGGCT
81974577 TCTTTTAACA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 16 0.40
30 24 0.60
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (29 bp):
AGATAGCCACAAAGGCTATCCTTTAGCAA
Found at i:81981647 original size:16 final size:17
Alignment explanation
Indices: 81981611--81981645 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
81981601 TTTTAAGCTC
81981611 TTAAAAAAATTACACAT
1 TTAAAAAAATTACACAT
*
81981628 TTAAAAAATTTACACAT
1 TTAAAAAAATTACACAT
81981645 T
1 T
81981646 AACTTACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.34
Consensus pattern (17 bp):
TTAAAAAAATTACACAT
Found at i:81984026 original size:21 final size:21
Alignment explanation
Indices: 81983975--81984026 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
81983965 GTTACTAGTT
* *
81983975 TTATTTTTATTATTTTTATTA
1 TTATTTTTATTATTGTTATGA
** *
81983996 TTATGCTTATTCTTGTTATGA
1 TTATTTTTATTATTGTTATGA
81984017 TTATTTTTAT
1 TTATTTTTAT
81984027 CATTTTTTAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.69
Consensus pattern (21 bp):
TTATTTTTATTATTGTTATGA
Found at i:81993108 original size:43 final size:41
Alignment explanation
Indices: 81993058--81993166 Score: 128
Period size: 43 Copynumber: 2.6 Consensus size: 41
81993048 GTACCAATGG
* *
81993058 GATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCA
1 GATATGGTCTTACA-GTAATCTCATATCAATGCC-ATAGCCCA
* ** *
81993101 GCTATGGTCTTACACAAAGTCTCATATCAATGCCATATCCCA
1 GATATGGTCTTACAGTAA-TCTCATATCAATGCCATAGCCCA
81993143 GATATGGTCTTACACGTAATCTCA
1 GATATGGTCTTACA-GTAATCTCA
81993167 GTAACCCTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 27 0.49
43 28 0.51
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (41 bp):
GATATGGTCTTACAGTAATCTCATATCAATGCCATAGCCCA
Found at i:81993156 original size:42 final size:42
Alignment explanation
Indices: 81993058--81993166 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 42
81993048 GTACCAATGG
** * *
81993058 GATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCA
1 GATATGGTCTTACA-CAAATCTCATATCAATGCCAATAGCCCA
* *
81993101 GCTATGGTCTTACACAAAGTCTCATATCAATGCC-ATATCCCA
1 GATATGGTCTTACACAAA-TCTCATATCAATGCCAATAGCCCA
*
81993143 GATATGGTCTTACACGTAATCTCA
1 GATATGGTCTTACAC-AAATCTCA
81993167 GTAACCCTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.50
43 28 0.50
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
GATATGGTCTTACACAAATCTCATATCAATGCCAATAGCCCA
Found at i:81999401 original size:18 final size:18
Alignment explanation
Indices: 81999378--81999415 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
81999368 TTAATGTAAC
81999378 ACGCTAGATTCGGGCCTA
1 ACGCTAGATTCGGGCCTA
81999396 ACGCTAGATTCGGGCCTA
1 ACGCTAGATTCGGGCCTA
81999414 AC
1 AC
81999416 TTTTGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (18 bp):
ACGCTAGATTCGGGCCTA
Found at i:82001925 original size:29 final size:29
Alignment explanation
Indices: 82001885--82001987 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
82001875 GTTGAGAGAT
*
82001885 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
82001914 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
82001943 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
82001972 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82001988 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:82010008 original size:29 final size:29
Alignment explanation
Indices: 82009968--82010070 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
82009958 GTTGAGAGAT
*
82009968 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
82009997 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
82010026 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
82010055 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82010071 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:82012821 original size:10 final size:10
Alignment explanation
Indices: 82012787--82012830 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
82012777 GAAAATAATC
* *
82012787 AAAATTAATC
1 AAAATTATTT
82012797 AAAATTTATTAT
1 AAAA-TTATT-T
82012809 AAAATTATTT
1 AAAATTATTT
82012819 AAAATTATTT
1 AAAATTATTT
82012829 AA
1 AA
82012831 GTCCAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 17 0.57
11 9 0.30
12 4 0.13
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (10 bp):
AAAATTATTT
Found at i:82012875 original size:21 final size:22
Alignment explanation
Indices: 82012838--82012878 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
82012828 TAAGTCCAAA
*
82012838 ATAATTATTTTATAATAATTAT
1 ATAATTATTTGATAATAATTAT
82012860 ATAATT-TTTGATAATAATT
1 ATAATTATTTGATAATAATT
82012879 TTACCGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
ATAATTATTTGATAATAATTAT
Found at i:82014649 original size:6 final size:6
Alignment explanation
Indices: 82014638--82014676 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
82014628 TTTTAATTCC
* *
82014638 TTTCTT TTTCTT TTTCTT TTTCTT TTTGTT TTTGTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
82014677 AGTTGTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:82018573 original size:3 final size:3
Alignment explanation
Indices: 82018565--82018599 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
82018555 ATAAAAATTA
82018565 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
82018600 ACTAATTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:82022692 original size:9 final size:8
Alignment explanation
Indices: 82022672--82022703 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
82022662 GTTTCATAAT
*
82022672 TTTTTGAA
1 TTTTTAAA
82022680 TTTTTAAA
1 TTTTTAAA
82022688 TTTTTAAA
1 TTTTTAAA
82022696 TTTTTAAA
1 TTTTTAAA
82022704 AATTAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (8 bp):
TTTTTAAA
Found at i:82026812 original size:26 final size:25
Alignment explanation
Indices: 82026772--82026826 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
82026762 ATTTAGCCAT
* * *
82026772 TTTTTATTTTATTTTAATATTTTTA
1 TTTTTAATTTATTTTAACATTTTAA
*
82026797 TTTTTAATTTAGTTTTTACATTTTAA
1 TTTTTAATTTA-TTTTAACATTTTAA
82026823 TTTT
1 TTTT
82026827 CCTTTTGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (25 bp):
TTTTTAATTTATTTTAACATTTTAA
Found at i:82027906 original size:42 final size:42
Alignment explanation
Indices: 82027860--82027943 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
82027850 AGCACGAGTA
82027860 AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
1 AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
82027902 AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
1 AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
82027944 CTATAACAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (42 bp):
AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
Done.