Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 264 of 438
Found at i:82030691 original size:3 final size:3
Alignment explanation
Indices: 82030677--82030745 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
82030667 GGCCATTTCC
*
82030677 TTA TTT TTA TTA TTA TT- TTA TTA TTA -TA TTTA GTTA TTTA GTTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA -TTA -TTA TTA
* *
82030723 TTA TTA TTA CTG TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
82030746 TTTTGTATAG
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
2 6 0.11
3 36 0.68
4 11 0.21
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:82030694 original size:12 final size:12
Alignment explanation
Indices: 82030677--82030748 Score: 65
Period size: 12 Copynumber: 5.7 Consensus size: 12
82030667 GGCCATTTCC
82030677 TTATTTTTATTA
1 TTATTTTTATTA
82030689 TTA-TTTTATTA
1 TTATTTTTATTA
*
82030700 TTATATTTAGTTA
1 TTATTTTTA-TTA
82030713 TTTAGTTATTTTATTA
1 -TTA--T-TTTTATTA
* *
82030729 TTACTGTTATTA
1 TTATTTTTATTA
82030741 TTATTTTT
1 TTATTTTT
82030749 TGTATAGTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
11 11 0.23
12 20 0.42
13 3 0.06
14 3 0.06
15 3 0.06
16 4 0.08
17 4 0.08
ACGTcount: A:0.25, C:0.01, G:0.04, T:0.69
Consensus pattern (12 bp):
TTATTTTTATTA
Found at i:82030713 original size:16 final size:15
Alignment explanation
Indices: 82030683--82030745 Score: 53
Period size: 17 Copynumber: 4.1 Consensus size: 15
82030673 TTCCTTATTT
82030683 TTATTA-TTATTTTA
1 TTATTAGTTATTTTA
82030697 TTATTA--TA-TTTA
1 TTATTAGTTATTTTA
82030709 GTTATTTAGTTATTTTA
1 -TTA-TTAGTTATTTTA
82030726 TTATTACTGTTATTATTA
1 TTATTA--GTTATT-TTA
82030744 TT
1 TT
82030746 TTTTGTATAG
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
12 4 0.10
13 5 0.12
14 9 0.22
15 3 0.07
16 5 0.12
17 10 0.24
18 5 0.12
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.67
Consensus pattern (15 bp):
TTATTAGTTATTTTA
Found at i:82032854 original size:58 final size:58
Alignment explanation
Indices: 82032740--82032856 Score: 173
Period size: 58 Copynumber: 2.0 Consensus size: 58
82032730 TTGTTTATAC
* * *
82032740 GATAAATTCCCTGAATTGTTTTTTGTGTTTAAATAATTTTCTCACACCTGTCATTAGA
1 GATAAATTCCCTAAATTGTTCTTTGTGTTTAAATAATTTTCTCACACCTCTCATTAGA
* *
82032798 GATAAATTCCCTAAATTGTTCTTTGTGTTTAAGTACTTTTCTCACACCTACT-ATTAGA
1 GATAAATTCCCTAAATTGTTCTTTGTGTTTAAATAATTTTCTCACACCT-CTCATTAGA
82032856 G
1 G
82032857 TTAATTTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
58 52 0.98
59 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (58 bp):
GATAAATTCCCTAAATTGTTCTTTGTGTTTAAATAATTTTCTCACACCTCTCATTAGA
Found at i:82041807 original size:57 final size:58
Alignment explanation
Indices: 82041730--82041852 Score: 157
Period size: 57 Copynumber: 2.2 Consensus size: 58
82041720 GGTGAATATA
*
82041730 GAGAAATGAGAAATATTTGGAAATTGTTAT-T-ATTTTCTCCAAAATGAAAATGAAAATG
1 GAGAAATGAGAAATATTTGGAAA-TG-AATGTGATTTTCTCCAAAATGAAAATGAAAATG
*
82041788 GAGAAAT-AG-AATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAATGAAAAT-
1 GAGAAATGAGAAAT-ATTTGGAAATGAATGTGATTTTCTCCAAAATGAAAATGAAAATG
*
82041844 GAAAAATGA
1 GAGAAATGA
82041853 CCTAGAAATG
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
55 2 0.03
56 12 0.21
57 37 0.64
58 7 0.12
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29
Consensus pattern (58 bp):
GAGAAATGAGAAATATTTGGAAATGAATGTGATTTTCTCCAAAATGAAAATGAAAATG
Found at i:82041861 original size:51 final size:56
Alignment explanation
Indices: 82041762--82041865 Score: 137
Period size: 57 Copynumber: 1.9 Consensus size: 56
82041752 ATTGTTATTA
* * *
82041762 TTTTCTCCAAAATGAAAATGAAAATGGAGAAATAGAATCATTTGGAAATGAATGTGG
1 TTTTCTCCAAAATGAAAATGAAAATGGAAAAATAGAATCA-CTAGAAATGAATGTGG
82041819 TTTTCTCCAAAATGAAAATGAAAAT-GAAAAAT-G-A-C-CTAGAAATGAAT
1 TTTTCTCCAAAATGAAAATGAAAATGGAAAAATAGAATCACTAGAAATGAAT
82041866 TTATGTTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
51 10 0.23
53 1 0.02
54 1 0.02
55 1 0.02
56 6 0.14
57 25 0.57
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.27
Consensus pattern (56 bp):
TTTTCTCCAAAATGAAAATGAAAATGGAAAAATAGAATCACTAGAAATGAATGTGG
Found at i:82043401 original size:40 final size:40
Alignment explanation
Indices: 82043342--82043483 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
82043332 AAATTGAATG
* * *
82043342 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
82043382 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
82043422 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
82043462 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
82043484 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:82043484 original size:40 final size:39
Alignment explanation
Indices: 82043381--82043509 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
82043371 TGCTGGAAAT
* * *
82043381 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
82043421 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
82043461 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
82043501 TATATCCGG
1 TATATCCGG
82043510 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:82051411 original size:40 final size:40
Alignment explanation
Indices: 82051352--82051493 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
82051342 AAATTGAATG
* * *
82051352 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
82051392 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
82051432 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
82051472 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
82051494 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:82051494 original size:40 final size:39
Alignment explanation
Indices: 82051391--82051519 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
82051381 TGCTGGAAAT
* * *
82051391 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
82051431 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
82051471 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
82051511 TATATCCGG
1 TATATCCGG
82051520 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:82054470 original size:9 final size:9
Alignment explanation
Indices: 82054453--82054516 Score: 83
Period size: 9 Copynumber: 7.1 Consensus size: 9
82054443 TGAGTTTTCA
82054453 AATTCGAAT
1 AATTCGAAT
*
82054462 AACTCGAAT
1 AATTCGAAT
*
82054471 AATTCAAAT
1 AATTCGAAT
*
82054480 AATTCAAAT
1 AATTCGAAT
*
82054489 AACTCGAAT
1 AATTCGAAT
*
82054498 AATTCAAAT
1 AATTCGAAT
82054507 AATTCGAAT
1 AATTCGAAT
82054516 A
1 A
82054517 TCAAACTATA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.50, C:0.14, G:0.06, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:82054474 original size:18 final size:18
Alignment explanation
Indices: 82054453--82054516 Score: 92
Period size: 18 Copynumber: 3.6 Consensus size: 18
82054443 TGAGTTTTCA
* *
82054453 AATTCGAATAACTCGAAT
1 AATTCGAATAATTCAAAT
*
82054471 AATTCAAATAATTCAAAT
1 AATTCGAATAATTCAAAT
*
82054489 AACTCGAATAATTCAAAT
1 AATTCGAATAATTCAAAT
82054507 AATTCGAATA
1 AATTCGAATA
82054517 TCAAACTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.50, C:0.14, G:0.06, T:0.30
Consensus pattern (18 bp):
AATTCGAATAATTCAAAT
Found at i:82054489 original size:27 final size:27
Alignment explanation
Indices: 82054453--82054516 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
82054443 TGAGTTTTCA
82054453 AATTCGAATAACTCGAATAATTCAAAT
1 AATTCGAATAACTCGAATAATTCAAAT
*
82054480 AATTCAAATAACTCGAATAATTCAAAT
1 AATTCGAATAACTCGAATAATTCAAAT
82054507 AATTCGAATA
1 AATTCGAATA
82054517 TCAAACTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.50, C:0.14, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTCGAATAACTCGAATAATTCAAAT
Found at i:82057218 original size:11 final size:11
Alignment explanation
Indices: 82057194--82057234 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
82057184 ATTTGCTACA
82057194 AGCTCATT--T
1 AGCTCATTCAT
82057203 AGCTCATTCAT
1 AGCTCATTCAT
82057214 AGCTCATTCAT
1 AGCTCATTCAT
82057225 AGCTCATTCA
1 AGCTCATTCA
82057235 AGTTTATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 8 0.27
11 22 0.73
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.37
Consensus pattern (11 bp):
AGCTCATTCAT
Found at i:82057529 original size:17 final size:17
Alignment explanation
Indices: 82057507--82057542 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
82057497 TTTGCTATAG
*
82057507 TTATTTAAGTTATTTAA
1 TTATTTAACTTATTTAA
*
82057524 TTATTTAACTTGTTTAA
1 TTATTTAACTTATTTAA
82057541 TT
1 TT
82057543 GTGCTTATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (17 bp):
TTATTTAACTTATTTAA
Found at i:82066910 original size:12 final size:13
Alignment explanation
Indices: 82066893--82066921 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
82066883 TTAATTAAAT
82066893 TAATTTT-AAAAA
1 TAATTTTAAAAAA
82066905 TAATTTTAAAAAA
1 TAATTTTAAAAAA
82066918 TAAT
1 TAAT
82066922 AAAATGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATTTTAAAAAA
Found at i:82066964 original size:22 final size:23
Alignment explanation
Indices: 82066939--82066983 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
82066929 AATTTACTAT
* *
82066939 TAATTACATTAA-TCTTTAAAAA
1 TAATTAAATTAACTATTTAAAAA
82066961 TAATTAAATTAACTATTTAAAAA
1 TAATTAAATTAACTATTTAAAAA
82066984 ATAAGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (23 bp):
TAATTAAATTAACTATTTAAAAA
Found at i:82073605 original size:21 final size:22
Alignment explanation
Indices: 82073554--82073605 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
82073544 AATAAAGTCT
*
82073554 ATGTA-CAAATATCATCATCTC
1 ATGTATCATATATCATCATCTC
* *
82073575 ATGTTTTCATATATCAT-ATGTC
1 ATG-TATCATATATCATCATCTC
82073597 ATGTATCAT
1 ATGTATCAT
82073606 CATTTACTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 8 0.32
22 8 0.32
23 9 0.36
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (22 bp):
ATGTATCATATATCATCATCTC
Found at i:82073916 original size:57 final size:57
Alignment explanation
Indices: 82073822--82073969 Score: 149
Period size: 57 Copynumber: 2.6 Consensus size: 57
82073812 ATTATACAAT
* * * * * * *
82073822 AGGATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTG-AAGAGCTTGATCT-
1 AGGATTACCTGTTCGGGCTAAATCC-TTTCATAACATATGCTC-GAAAG-GATTGATATC
* *
82073880 A-GATTACCTGTTCGGGCTAAATCCAATTCATAACATATGCTCGAAAGGATTTATATC
1 AGGATTACCTGTTCGGGCTAAATCC-TTTCATAACATATGCTCGAAAGGATTGATATC
*
82073937 AGGATTACCTGTTTGGGCTAAATCCTTTCATAA
1 AGGATTACCTGTTCGGGCTAAATCCTTTCATAA
82073970 ATGAGGTCGA
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
56 7 0.09
57 45 0.60
58 23 0.31
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (57 bp):
AGGATTACCTGTTCGGGCTAAATCCTTTCATAACATATGCTCGAAAGGATTGATATC
Found at i:82074762 original size:19 final size:20
Alignment explanation
Indices: 82074738--82074775 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82074728 TATCAACAAC
82074738 ATTTCAT-TTTCTACCATAA
1 ATTTCATATTTCTACCATAA
*
82074757 ATTTCATATTTCTAGCATA
1 ATTTCATATTTCTACCATA
82074776 TTCATCCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.32, C:0.18, G:0.03, T:0.47
Consensus pattern (20 bp):
ATTTCATATTTCTACCATAA
Found at i:82080599 original size:47 final size:47
Alignment explanation
Indices: 82080545--82080738 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
82080535 TTAGGATTTT
** * *
82080545 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
82080592 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
82080639 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
82080686 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
82080733 ATGTGA
1 ATGTGA
82080739 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:82080645 original size:22 final size:22
Alignment explanation
Indices: 82080574--82080645 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
82080564 GTATATATGA
82080574 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
82080596 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
82080621 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
82080643 GAT
1 GAT
82080646 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:82080694 original size:25 final size:25
Alignment explanation
Indices: 82080619--82080694 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
82080609 ATGCATATAT
82080619 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
82080644 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
82080666 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
82080691 GTGA
1 GTGA
82080695 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:82080858 original size:98 final size:97
Alignment explanation
Indices: 82080703--82080892 Score: 303
Period size: 98 Copynumber: 1.9 Consensus size: 97
82080693 GAATATGAAC
* *
82080703 ATGCATATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATGCATATA-GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
82080768 AGCCGAATGGCTAATGTGAAATATGTATGAGAT
65 AGCCGAATGGCTAATGTGAAATATGTATGAGAT
82080801 ATGCATATA-TGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATGCATATAGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGT
*
82080864 AAAGCCGAATGGCTAGTGTGAAATATGTA
63 AAAGCCGAATGGCTAATGTGAAATATGTA
82080893 GGCGATGTGC
Statistics
Matches: 86, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
95 1 0.01
96 21 0.24
97 2 0.02
98 62 0.72
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (97 bp):
ATGCATATAGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAA
GCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:82080908 original size:50 final size:48
Alignment explanation
Indices: 82080708--82080892 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
82080698 TGAACATGCA
*
82080708 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
82080756 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
82080804 CATATATGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
82080854 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
82080893 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:82081089 original size:37 final size:37
Alignment explanation
Indices: 82081039--82081110 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
82081029 GGAAATATAT
*
82081039 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
82081076 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
82081111 CGTCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:82083129 original size:67 final size:63
Alignment explanation
Indices: 82083007--82083258 Score: 156
Period size: 63 Copynumber: 3.9 Consensus size: 63
82082997 ATACAGATAG
* * * * *
82083007 TATGTAGCTAGGTCACATGTATGGTGCTAGTGCACATCATGTGTACAAGAGAGCTACAAGACATT
1 TATGTAGCTAGGTCGCATGGATGATACTAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-T
82083072 A
63 A
* * **
82083073 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGA-AGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTA-GTGCACACCATGT-GTACAAGAGAGCTACGACAT
82083136 A
63 A
* * *
82083137 TATGTAGCTAGGTCGCATGCG-TGGCT-CCAGGTGAAGGACACCATGTAG-ACAAGAGAGCTACG
1 TATGTAGCTAGGTCGCATG-GAT-GATACTA-GT---GCACACCATGT-GTACAAGAGAGCTACG
*
82083199 AGATA
59 ACATA
* * * * * **
82083204 AAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGTACAAGAGAGCT
1 TATGTAGCTAGGTCGCATGGATGATACT-AGTGCACACCATGTGTACAAGAGAGCT
82083259 GAACTCTATG
Statistics
Matches: 152, Mismatches: 21, Indels: 29
0.75 0.10 0.14
Matches are distributed among these distances:
62 1 0.01
63 43 0.28
64 6 0.04
65 5 0.03
66 36 0.24
67 43 0.28
68 17 0.11
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (63 bp):
TATGTAGCTAGGTCGCATGGATGATACTAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:82083154 original size:63 final size:64
Alignment explanation
Indices: 82083075--82083258 Score: 180
Period size: 63 Copynumber: 2.9 Consensus size: 64
82083065 AGACATTATG
* *
82083075 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGA-AGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
82083138 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
82083202 TAA
62 TAA
* * * *
82083205 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
82083259 GAACTCTATG
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 42 0.43
64 3 0.03
65 4 0.04
66 34 0.35
67 14 0.14
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:82084340 original size:2 final size:2
Alignment explanation
Indices: 82084333--82084360 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
82084323 GTATCATGAC
82084333 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82084361 GACTAGTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82087557 original size:68 final size:66
Alignment explanation
Indices: 82087485--82087656 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
82087475 CATCATGTGT
* * * *
82087485 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
82087548 TGTAG
62 TGTAG
** * *
82087553 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
82087618 AG
65 AG
* * * *
82087620 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
82087657 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:82087590 original size:64 final size:64
Alignment explanation
Indices: 82087509--82087692 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
82087499 AGACATTATG
* * *
82087509 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
82087573 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
82087638 AA
63 AA
* * *
82087640 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
82087693 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:82092021 original size:63 final size:64
Alignment explanation
Indices: 82091875--82092124 Score: 199
Period size: 63 Copynumber: 3.9 Consensus size: 64
82091865 TACAGATAGT
* ** * * * *
82091875 ATGTAGCTAGGTCACATGTATGGTGCTA-GTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA-
*
82091938 TATG
62 TA-A
* * *
82091942 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGA-AGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
82092005 ATGTAGCTAGGTCGCATGCGTGGT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
82092069 AA
63 AA
* * *
82092071 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
82092125 GAACTCTATG
Statistics
Matches: 150, Mismatches: 24, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
62 3 0.02
63 42 0.28
64 5 0.03
65 38 0.25
66 14 0.09
67 30 0.20
68 17 0.11
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:82093952 original size:40 final size:40
Alignment explanation
Indices: 82093893--82094019 Score: 168
Period size: 40 Copynumber: 3.2 Consensus size: 40
82093883 CAGAATACAA
* *
82093893 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACTTGCACGAATGCCTTCGGGTCTTAGC
*
82093933 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
82093973 CCGGAT-GTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATAG-AACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
82094013 CCGGATA
1 CCGGATA
82094020 TAGTTTCCAG
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATAGAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:82094043 original size:40 final size:40
Alignment explanation
Indices: 82093893--82094060 Score: 156
Period size: 40 Copynumber: 4.2 Consensus size: 40
82093883 CAGAATACAA
* ** *
82093893 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCCACCAGCACAAATGCCTTCGGGTCTTAGC
* * * ** *
82093933 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCCACCAGCACAAATGCCTTCGGGTCTTAGC
* * * *
82093973 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCCACCAGCACAAATGCCTTCGGGTCTTAGC
*** * * *
82094013 CCGGATATAGTTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAGCCACCAGCACAAATGCCTTCGGGTCTTAGC
82094053 CCGGATAT
1 CCGGATAT
82094061 CATTCAATTG
Statistics
Matches: 107, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAGCCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82096552 original size:2 final size:2
Alignment explanation
Indices: 82096547--82096572 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82096537 ACGCACACAC
82096547 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
82096573 GACTAGTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82102676 original size:37 final size:37
Alignment explanation
Indices: 82102626--82102708 Score: 157
Period size: 37 Copynumber: 2.2 Consensus size: 37
82102616 TTATCACGAA
82102626 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
82102663 GTCTTACCCGGACATAATCTCCACTCGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
82102700 GTCTTACCC
1 GTCTTACCC
82102709 AGAACATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:82102860 original size:49 final size:49
Alignment explanation
Indices: 82102803--82103089 Score: 542
Period size: 49 Copynumber: 5.9 Consensus size: 49
82102793 CACACATATA
* *
82102803 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATACATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
82102852 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
82102901 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
82102950 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
82102997 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
82103046 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
82103090 CATCTCATAC
Statistics
Matches: 234, Mismatches: 2, Indels: 4
0.98 0.01 0.02
Matches are distributed among these distances:
47 47 0.20
49 187 0.80
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:82103036 original size:145 final size:146
Alignment explanation
Indices: 82102803--82103089 Score: 549
Period size: 145 Copynumber: 2.0 Consensus size: 146
82102793 CACACATATA
82102803 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACA
1 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATA-ATACACTTTCACATTCATCACA
82102868 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
65 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
82102933 ATCACATATATATACAC
130 ATCACATATATATACAC
*
82102950 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-ATACACTTTCACATTCATCACAT
1 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATAATACACTTTCACATTCATCACAT
82103014 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82103079 TCACATATATA
131 TCACATATATA
82103090 CATCTCATAC
Statistics
Matches: 139, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
145 99 0.71
147 40 0.29
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (146 bp):
TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATAATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATATACAC
Found at i:82103040 original size:96 final size:96
Alignment explanation
Indices: 82102803--82103091 Score: 542
Period size: 96 Copynumber: 3.0 Consensus size: 96
82102793 CACACATATA
* *
82102803 TTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
82102868 TCGGCCATTAGGCCTTATCACATATATATACAC
66 TCGGCCATTAGGCCTTATCAC--ATATATACAC
82102901 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
82102966 TCGGCCATTAGGCCTTATCACATATATACAC
66 TCGGCCATTAGGCCTTATCACATATATACAC
82102997 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
82103062 TCGGCCATTAGGCCTTATCACATATATACA
66 TCGGCCATTAGGCCTTATCACATATATACA
82103092 TCTCATACAT
Statistics
Matches: 189, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
96 105 0.56
98 84 0.44
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (96 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACAC
Found at i:82106124 original size:26 final size:26
Alignment explanation
Indices: 82106061--82106126 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 26
82106051 TAATACAAAA
82106061 TTTACCA-TACAGGCTTTCCAGATGAC
1 TTTACCACTA-AGGCTTTCCAGATGAC
* *
82106087 -TTACCTCAAAGGCTTTCCAGAT-ATC
1 TTTACCACTAAGGCTTTCCAGATGA-C
82106112 TTTACCACTAAGGCT
1 TTTACCACTAAGGCT
82106127 CCCCAAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
24 1 0.03
25 19 0.58
26 13 0.39
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (26 bp):
TTTACCACTAAGGCTTTCCAGATGAC
Found at i:82106170 original size:25 final size:25
Alignment explanation
Indices: 82106130--82106201 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 25
82106120 TAAGGCTCCC
*
82106130 CAAATAATTCTCCACATA-GGCTTTT
1 CAAATAATTCGCCACA-AGGGCTTTT
* *
82106155 CAAATAATTCGGCACAAGGGCTTTA
1 CAAATAATTCGCCACAAGGGCTTTT
* * * *
82106180 CAGACAACTCGCCACAAAGGCT
1 CAAATAATTCGCCACAAGGGCT
82106202 CTGTTTGGTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (25 bp):
CAAATAATTCGCCACAAGGGCTTTT
Found at i:82117609 original size:46 final size:46
Alignment explanation
Indices: 82117542--82117711 Score: 198
Period size: 46 Copynumber: 3.7 Consensus size: 46
82117532 TGTAACCCGC
*
82117542 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTAGCAT
* * * *
82117588 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACG-TTAGCAT
* *** * * * *
82117634 TCATCTCTCGAACTCGGACTCAACTCAACGAGTTCAAACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGACGTTAGCAT
82117681 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
82117712 TTCGGATGCC
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 67 0.67
47 33 0.33
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTAGCAT
Found at i:82117662 original size:93 final size:93
Alignment explanation
Indices: 82117550--82117721 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
82117540 GCCCATAAGT
* *
82117550 GAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82117615 CGAGCTCGGATGCCTAGTTTCATCTCTC
66 CGAGCTCGGATGCCTAGTTTCATCTCTC
* *
82117643 GAACTCGGACTCAACTCAACGAGTTCAAACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
82117708 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
82117722 CAAACATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTTCATCTCTC
Found at i:82122602 original size:107 final size:106
Alignment explanation
Indices: 82122399--82122634 Score: 272
Period size: 107 Copynumber: 2.2 Consensus size: 106
82122389 ACCTAAAATA
* ** * * *
82122399 ATAATAATATTAAGAATGCTAATAAATTATATAATATTTTATTAAATTGTATTAATAATTGTGTT
1 ATAATTATATTAAGAATATTATTAAATTATATAATATTTTATTAAATTATATTAATAATTATGTT
* *
82122464 AAAATATGATTAAATTATTTATTATGATTTTTATT-AATTAAT
66 AAAATATGATGAAATTATTTACTAT-ATTTTTATTAAATT-AT
*
82122506 ATAATTATATTAAGAATATTATTAAATTATATATTA-TTTATTAAATTATATTTAATAATAATTA
1 ATAATTATATTAAGAATATTATTAAATTATATAATATTTTATTAAATTATA--T--TAATAATTA
82122570 TGTTAAAATATGATGAAATTATTTACT-T-TTTTTATTAAATTAT
62 TGTTAAAATATGATGAAATTATTTACTATATTTTTATTAAATTAT
*
82122613 AT--TTA-A-TAATAATATTATTAAA
1 ATAATTATATTAAGAATATTATTAAA
82122635 ATTTAATAAC
Statistics
Matches: 114, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
103 15 0.13
104 1 0.01
105 3 0.03
106 13 0.11
107 43 0.38
108 5 0.04
109 1 0.01
110 33 0.29
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.50
Consensus pattern (106 bp):
ATAATTATATTAAGAATATTATTAAATTATATAATATTTTATTAAATTATATTAATAATTATGTT
AAAATATGATGAAATTATTTACTATATTTTTATTAAATTAT
Found at i:82122617 original size:58 final size:57
Alignment explanation
Indices: 82122395--82122633 Score: 189
Period size: 54 Copynumber: 4.3 Consensus size: 57
82122385 ATGTACCTAA
* * * * *
82122395 AATAATAATAATATTAAGAATGCTAAT-AAATTATATAATATTTTATTAAATTGTA--T
1 AATAATAATTATATTAAGAAT-ATGATGAAATTATATATTA-TTTATTAAATTATATTT
* * * * *
82122451 --TAATAATTGTGTTAA-AATATGATTAAATTATTTATTATGATT-TT-TATTA-A-TT
1 AATAATAATTATATTAAGAATATGATGAAATTATATATTAT--TTATTAAATTATATTT
* *
82122503 AAT-ATAATTATATTAAGAATATTATTAAATTATATATTATTTATTAAATTATATTT
1 AATAATAATTATATTAAGAATATGATGAAATTATATATTATTTATTAAATTATATTT
* * *
82122559 AATAATAATTATGTTAA-AATATGATGAAATTATTTACTTTTTTTATTAAATTATATTT
1 AATAATAATTATATTAAGAATATGATGAAATTATATA--TTATTTATTAAATTATATTT
82122617 AATAATAA-TATTATTAA
1 AATAATAATTA-TATTAA
82122634 AATTTAATAA
Statistics
Matches: 148, Mismatches: 20, Indels: 28
0.76 0.10 0.14
Matches are distributed among these distances:
51 1 0.01
52 10 0.07
53 29 0.20
54 40 0.27
55 1 0.01
56 21 0.14
57 14 0.09
58 32 0.22
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (57 bp):
AATAATAATTATATTAAGAATATGATGAAATTATATATTATTTATTAAATTATATTT
Found at i:82122824 original size:16 final size:16
Alignment explanation
Indices: 82122803--82122856 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
82122793 TTAATTACTG
82122803 ATTACATCTCTATTCC
1 ATTACATCTCTATTCC
* *
82122819 ATTACAACTGTATTCC
1 ATTACATCTCTATTCC
* *
82122835 ATTACATTTCTATTTC
1 ATTACATCTCTATTCC
82122851 ATTACA
1 ATTACA
82122857 GTCTTTTTGC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.30, C:0.24, G:0.02, T:0.44
Consensus pattern (16 bp):
ATTACATCTCTATTCC
Found at i:82132295 original size:46 final size:46
Alignment explanation
Indices: 82132228--82132348 Score: 197
Period size: 46 Copynumber: 2.6 Consensus size: 46
82132218 GCCCATAAGC
* * * *
82132228 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGT
*
82132274 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGT
82132320 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
82132349 TGCCCAAATA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGT
Found at i:82132367 original size:46 final size:45
Alignment explanation
Indices: 82132220--82132354 Score: 155
Period size: 46 Copynumber: 3.0 Consensus size: 45
82132210 TGTAACCCGC
* * * ** * *
82132220 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGAATGCCCAT
* * *
82132266 CCACAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCCCAT
82132312 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCA
82132355 AATATCCTAG
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
44 5 0.06
45 2 0.03
46 72 0.91
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAT
Found at i:82134240 original size:26 final size:26
Alignment explanation
Indices: 82134209--82134264 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
82134199 TGAAATTTCC
82134209 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82134235 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82134261 ATCA
1 ATCA
82134265 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82141242 original size:26 final size:26
Alignment explanation
Indices: 82141212--82141345 Score: 250
Period size: 26 Copynumber: 5.2 Consensus size: 26
82141202 TGAAATTCCC
82141212 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82141238 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82141264 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82141290 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82141316 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82141342 ATCA
1 ATCA
82141346 ATTTGTATCA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82141799 original size:45 final size:45
Alignment explanation
Indices: 82141735--82141866 Score: 183
Period size: 45 Copynumber: 2.9 Consensus size: 45
82141725 ACGCTTTCAT
* * * *
82141735 ATGATGTCATAGCATCTTTCAGGTATGGTCTTACTAATTTTTATA
1 ATGATGTCATAGTATCTTTCAGCTATGGTCTTACTCATTTTAATA
* * *
82141780 ATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTAATC
1 ATGATGTCATAGTATCTTTCAGCTATGGTCTTACTCATTTTAATA
* *
82141825 ATGATGTCATAATATCTTTTAGCTATGGTCTTACTCATTTTA
1 ATGATGTCATAGTATCTTTCAGCTATGGTCTTACTCATTTTA
82141867 GGAATATAGC
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 76 1.00
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.45
Consensus pattern (45 bp):
ATGATGTCATAGTATCTTTCAGCTATGGTCTTACTCATTTTAATA
Found at i:82148329 original size:25 final size:25
Alignment explanation
Indices: 82148296--82148349 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
82148286 AAGTGTATAC
* **
82148296 ATAGTGTTAAAAATATGTACATAAT
1 ATAGCGTTAAAAATACATACATAAT
82148321 ATAGCGTTAAAAATACATACATAAT
1 ATAGCGTTAAAAATACATACATAAT
82148346 ATAG
1 ATAG
82148350 TTATTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.31
Consensus pattern (25 bp):
ATAGCGTTAAAAATACATACATAAT
Found at i:82148435 original size:15 final size:15
Alignment explanation
Indices: 82148415--82148466 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
82148405 AATATTAAAG
82148415 ATATATACATAATAT
1 ATATATACATAATAT
* *
82148430 ATATATA-AAAAAAT
1 ATATATACATAATAT
*
82148444 CATATATACATGATAT
1 -ATATATACATAATAT
82148460 ATATATA
1 ATATATA
82148467 TATTAGCAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 5 0.17
15 21 0.70
16 4 0.13
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (15 bp):
ATATATACATAATAT
Found at i:82148567 original size:25 final size:23
Alignment explanation
Indices: 82148534--82148658 Score: 91
Period size: 23 Copynumber: 5.3 Consensus size: 23
82148524 ACATATATAT
*
82148534 ATATAAATAATAATGGTATTAGAA
1 ATATAAATAATAATAGTATTA-AA
82148558 ATATACAAT-AT-ATAGTATTAGAA
1 ATATA-AATAATAATAGTATTA-AA
82148581 ATATATACATAA-AATAGTA-TAAA
1 ATATA-A-ATAATAATAGTATTAAA
*
82148604 ATATATATAACTAAT-GATATTAAA
1 ATATAAATAA-TAATAG-TATTAAA
*
82148628 ATATATACATAATAATA-TATAAAAA
1 ATATA-A-ATAATAATAGTAT-TAAA
82148653 ATATAA
1 ATATAA
82148659 TATTAAAAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 24
0.74 0.04 0.21
Matches are distributed among these distances:
21 4 0.05
22 1 0.01
23 29 0.35
24 24 0.29
25 22 0.26
26 4 0.05
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.34
Consensus pattern (23 bp):
ATATAAATAATAATAGTATTAAA
Found at i:82148630 original size:47 final size:45
Alignment explanation
Indices: 82148573--82148733 Score: 140
Period size: 47 Copynumber: 3.6 Consensus size: 45
82148563 CAATATATAG
82148573 TATTAGAAATATATACATAAAATAGTATAAAATATATATAACTAATGA
1 TATTA-AAATATATACATAAAATA-TATAAAATATATATAA-TAATGA
82148621 TATTAAAATATATACATAATAATATATAAAA-A-ATATAAT-AT--
1 TATTAAAATATATACATAA-AATATATAAAATATATATAATAATGA
** *
82148662 TAAAAAAATATATGTACATAACATATA-AAAATATATACATAAT-AT-A
1 TATTAAAATATA--TACATAAAATATATAAAATATAT--ATAATAATGA
* *
82148708 GTATTAAAATATTTACATAATATATA
1 -TATTAAAATATATACATAAAATATA
82148734 CATATTAGAA
Statistics
Matches: 97, Mismatches: 7, Indels: 21
0.78 0.06 0.17
Matches are distributed among these distances:
41 14 0.14
42 6 0.06
43 11 0.11
44 1 0.01
45 25 0.26
46 1 0.01
47 30 0.31
48 9 0.09
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (45 bp):
TATTAAAATATATACATAAAATATATAAAATATATATAATAATGA
Found at i:82148634 original size:22 final size:24
Alignment explanation
Indices: 82148532--82148733 Score: 84
Period size: 23 Copynumber: 8.8 Consensus size: 24
82148522 GTACATATAT
*
82148532 ATATATAA-ATAATAATGGTATTAGAA
1 ATATATAACATAATAAT-ATA-TA-AA
* * *
82148558 ATATACAATAT-ATAGTAT-TAGAA
1 ATATATAACATAATAATATATA-AA
82148581 ATATAT-ACATAA-AATAGTATAAA
1 ATATATAACATAATAATA-TATAAA
*
82148604 ATATATATA-ACTAATGATAT-TAAA
1 ATATATA-ACA-TAATAATATATAAA
82148628 ATATAT-ACATAATAATATATAAA
1 ATATATAACATAATAATATATAAA
* *
82148651 A-A-AT---ATAATATTA-AAAAA
1 ATATATAACATAATAATATATAAA
* *
82148669 ATATATGTACATAA-CATATA-AAA
1 ATATAT-AACATAATAATATATAAA
82148692 ATATAT-ACATAAT-ATAGTATTAAA
1 ATATATAACATAATAATA-TA-TAAA
*
82148716 ATAT-TTACATAAT-ATATA
1 ATATATAACATAATAATATA
82148734 CATATTAGAA
Statistics
Matches: 142, Mismatches: 12, Indels: 47
0.71 0.06 0.23
Matches are distributed among these distances:
18 5 0.04
19 9 0.06
20 2 0.01
21 11 0.08
22 18 0.13
23 40 0.28
24 35 0.25
25 6 0.04
26 14 0.10
27 2 0.01
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (24 bp):
ATATATAACATAATAATATATAAA
Found at i:82148658 original size:16 final size:16
Alignment explanation
Indices: 82148639--82148673 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
82148629 TATATACATA
82148639 ATAATA-TATAAAAAAT
1 ATAATATTA-AAAAAAT
82148655 ATAATATTAAAAAAAT
1 ATAATATTAAAAAAAT
82148671 ATA
1 ATA
82148674 TGTACATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
ATAATATTAAAAAAAT
Found at i:82148707 original size:11 final size:11
Alignment explanation
Indices: 82148627--82148737 Score: 57
Period size: 11 Copynumber: 10.1 Consensus size: 11
82148617 ATGATATTAA
82148627 AATATATACAT
1 AATATATACAT
* *
82148638 AATAATATATAA
1 AAT-ATATACAT
*
82148650 AAAATATA-AT
1 AATATATACAT
* * * *
82148660 ATTAAAAAAAT
1 AATATATACAT
*
82148671 -ATATGTACAT
1 AATATATACAT
* *
82148681 AACATATA-AA
1 AATATATACAT
82148691 AATATATACAT
1 AATATATACAT
* *
82148702 AATATAGTATTAA
1 AATATA-TA-CAT
*
82148715 AATATTTACAT
1 AATATATACAT
82148726 AATATATACAT
1 AATATATACAT
82148737 A
1 A
82148738 TTAGAAATAA
Statistics
Matches: 70, Mismatches: 24, Indels: 12
0.66 0.23 0.11
Matches are distributed among these distances:
10 18 0.26
11 34 0.49
12 12 0.17
13 6 0.09
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (11 bp):
AATATATACAT
Found at i:82148922 original size:23 final size:23
Alignment explanation
Indices: 82148851--82148960 Score: 91
Period size: 23 Copynumber: 4.6 Consensus size: 23
82148841 AATAATAAGG
82148851 ATAATA-TAAAAATATATACATGAA
1 ATAATATTAAAAATATATACAT--A
* **
82148875 ATAGTAAAAAAAATATATA-ACTA
1 ATAATATTAAAAATATATACA-TA
*
82148898 ATAATATTAAAAATATATGCATA
1 ATAATATTAAAAATATATACATA
*
82148921 AT-ATATATAAAAACATATACGATA
1 ATAATAT-TAAAAATATATAC-ATA
82148945 TATATATATTAAAAAT
1 -ATA-ATATTAAAAAT
82148961 GATAATAATA
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
22 4 0.06
23 31 0.45
24 10 0.14
25 14 0.20
26 6 0.09
27 4 0.06
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.32
Consensus pattern (23 bp):
ATAATATTAAAAATATATACATA
Found at i:82148938 original size:25 final size:23
Alignment explanation
Indices: 82148854--82148972 Score: 77
Period size: 23 Copynumber: 5.0 Consensus size: 23
82148844 AATAAGGATA
82148854 ATATAAAAATATATAC-ATGAA-AT
1 ATATAAAAA-ATATACGAT-AATAT
* **
82148877 AGTAAAAAAAATATATAACTAATA-
1 A-TATAAAAAATATACGA-TAATAT
* *
82148901 ATATTAAAAATATATGCATAATAT
1 ATATAAAAAATATACG-ATAATAT
82148925 ATATAAAAACATATACGATATATAT
1 ATATAAAAA-ATATACGATA-ATAT
*
82148950 ATATTAAAAATGATA--ATAATAT
1 ATATAAAAAAT-ATACGATAATAT
82148972 A
1 A
82148973 AAAAAACTAT
Statistics
Matches: 79, Mismatches: 8, Indels: 19
0.75 0.08 0.18
Matches are distributed among these distances:
22 5 0.06
23 26 0.33
24 25 0.32
25 23 0.29
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (23 bp):
ATATAAAAAATATACGATAATAT
Found at i:82149076 original size:21 final size:24
Alignment explanation
Indices: 82149052--82149101 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
82149042 ATACTAGTAC
82149052 TAATAATAT-TA-ATA-ATGAATA
1 TAATAATATATATATATATGAATA
*
82149073 TAATAATATATATATATATGCATA
1 TAATAATATATATATATATGAATA
82149097 TAATA
1 TAATA
82149102 GTAAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 9 0.36
22 2 0.08
23 3 0.12
24 11 0.44
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (24 bp):
TAATAATATATATATATATGAATA
Found at i:82149086 original size:12 final size:11
Alignment explanation
Indices: 82149052--82149187 Score: 62
Period size: 12 Copynumber: 11.7 Consensus size: 11
82149042 ATACTAGTAC
82149052 TAATAATATTAA
1 TAATAATA-TAA
82149064 TAATGAATATAA
1 TAAT-AATATAA
82149076 TAAT-ATATATA
1 TAATAATATA-A
*
82149087 TATATGCATATAA
1 TA-AT-AATATAA
* * *
82149100 TAGTAAAAAAA
1 TAATAATATAA
** *
82149111 CGAGACATATAAA
1 TAATA-ATAT-AA
*
82149124 AAATAACTA-AA
1 TAATAA-TATAA
*
82149135 T-ATAACATAA
1 TAATAATATAA
82149145 TAATAATAATAA
1 TAATAAT-ATAA
82149157 TAATAATAATAA
1 TAATAAT-ATAA
*
82149169 TAATAATACAA
1 TAATAATATAA
*
82149180 AAATAATA
1 TAATAATA
82149188 GTGATAACAA
Statistics
Matches: 95, Mismatches: 18, Indels: 23
0.70 0.13 0.17
Matches are distributed among these distances:
9 1 0.01
10 12 0.13
11 24 0.25
12 40 0.42
13 13 0.14
14 5 0.05
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (11 bp):
TAATAATATAA
Found at i:82149220 original size:3 final size:3
Alignment explanation
Indices: 82149141--82149202 Score: 74
Period size: 3 Copynumber: 21.0 Consensus size: 3
82149131 TAAATATAAC
82149141 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CA-A A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * *
82149185 ATA GTG ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA ATA
82149203 TATATAACAT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
2 3 0.06
3 47 0.92
4 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:82149862 original size:9 final size:9
Alignment explanation
Indices: 82149831--82149855 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
82149821 TAAAAAATTA
82149831 TTTTTTTAT
1 TTTTTTTAT
82149840 TTTTTTTAT
1 TTTTTTTAT
82149849 TTTTTTT
1 TTTTTTT
82149856 TGTTTTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:82149870 original size:2 final size:2
Alignment explanation
Indices: 82149865--82149894 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
82149855 TTGTTTTTGA
82149865 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82149895 TTGTATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82150992 original size:86 final size:88
Alignment explanation
Indices: 82150782--82151092 Score: 355
Period size: 87 Copynumber: 3.5 Consensus size: 88
82150772 ATCCTCAGCG
* * * * *
82150782 TGTGACCTGAGGCTCAACTCACTTATCT-CAATATGAGTTGACTTTTTTTGAAAAACAGATATTA
1 TGTGACCCGAGGCTCAACTCACCTCT-TGAAATATGAGTTGA---TTTTTGAAAAACAGAAATTA
* * *
82150846 AAACCAGATTTTGAAAATACCTCAGCA
62 AAAACAGAATTTGAAAATACCTCGGCA
* * * *
82150873 TATGGCCCGAGGCTCAACTCACCT-TTCGCAATATGAGTTGATTTTTG-AAAACAGACATTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTT-GAAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
* **
82150936 ACAGAAATTG-AAATACCTCGGTG
65 ACAGAATTTGAAAATACCTCGGCA
* *
82150959 TGTGACCCAAGGCTCAACTCACCTCTTGAAATATGAGTTGATTTTTGAAAAATAGAAATT-AAAA
1 TGTGACCCGAGGCTCAACTCACCTCTTGAAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAA
82151023 CAGAATTTGAAAATACCTCGGCA
66 CAGAATTTGAAAATACCTCGGCA
* *
82151046 TGTGACCCGAGGTTCAACTCACCTC-TCACAATATGAGTTGATTTTTG
1 TGTGACCCGAGGCTCAACTCACCTCTTGA-AATATGAGTTGATTTTTG
82151093 GAATAACTGA
Statistics
Matches: 191, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
86 64 0.34
87 86 0.45
88 6 0.03
89 1 0.01
90 1 0.01
91 33 0.17
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (88 bp):
TGTGACCCGAGGCTCAACTCACCTCTTGAAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAA
CAGAATTTGAAAATACCTCGGCA
Found at i:82163347 original size:25 final size:25
Alignment explanation
Indices: 82163318--82163448 Score: 118
Period size: 25 Copynumber: 4.9 Consensus size: 25
82163308 TATACGTAGT
82163318 ATTAAAAATATATACATAATATAGC
1 ATTAAAAATATATACATAATATAGC
* * *
82163343 GTTAAAAATACATACATAATATAGTT
1 ATTAAAAATATATACATAATATAG-C
82163369 ATTAAAAAATATATACATAAGATAATATGC
1 ATT-AAAAATATATACAT-A-AT-ATA-GC
** * *
82163399 AAGAAAAAAATATATAAATAATATAGT
1 -A-TTAAAAATATATACATAATATAGC
*
82163426 ATTAAAGATATATACATAATATA
1 ATTAAAAATATATACATAATATA
82163449 TATAAAAAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
25 40 0.48
26 3 0.04
27 14 0.17
28 4 0.05
29 4 0.05
30 4 0.05
31 15 0.18
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.31
Consensus pattern (25 bp):
ATTAAAAATATATACATAATATAGC
Found at i:82163451 original size:13 final size:13
Alignment explanation
Indices: 82163433--82163480 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
82163423 AGTATTAAAG
82163433 ATATATACATAAT
1 ATATATACATAAT
* *
82163446 ATATATAAAAAAAT
1 ATATAT-ACATAAT
*
82163460 CATATATACATGAT
1 -ATATATACATAAT
82163474 ATATATA
1 ATATATA
82163481 TATTAGCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
13 13 0.46
14 9 0.32
15 6 0.21
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (13 bp):
ATATATACATAAT
Found at i:82163621 original size:24 final size:24
Alignment explanation
Indices: 82163579--82163736 Score: 78
Period size: 24 Copynumber: 7.0 Consensus size: 24
82163569 GATACAATAT
*
82163579 ATAGTATTAGAAATATATACATAAA
1 ATAGTA-TAAAAATATATACATAAA
82163604 ATAGTATAAAAATATAT--ATAACTA
1 ATAGTATAAAAATATATACATAA--A
* *
82163628 A-CG-ATATTAAA-ATATACATAATA
1 ATAGTATA-AAAATATATACATAA-A
82163651 ATA-TATAAAAA-ATATA-AT---
1 ATAGTATAAAAATATATACATAAA
*
82163669 AT--TA-AAAAATATATGTACATAAC
1 ATAGTATAAAAATATA--TACATAAA
*
82163692 ATA-TA-AAAAATATATACATAAT
1 ATAGTATAAAAATATATACATAAA
* *
82163714 ATAGTATTAAAATATTTACATAA
1 ATAGTATAAAAATATATACATAA
82163737 TATACACATA
Statistics
Matches: 108, Mismatches: 8, Indels: 35
0.72 0.05 0.23
Matches are distributed among these distances:
16 5 0.05
17 5 0.05
18 2 0.02
19 2 0.02
20 2 0.02
22 23 0.21
23 19 0.18
24 44 0.41
25 6 0.06
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (24 bp):
ATAGTATAAAAATATATACATAAA
Found at i:82163624 original size:22 final size:23
Alignment explanation
Indices: 82163544--82163738 Score: 76
Period size: 24 Copynumber: 8.5 Consensus size: 23
82163534 ACATATATAT
* * *
82163544 ATATAAATAATAATGGTATTAGAA
1 ATATACATAATAATAGTA-TAAAA
*
82163568 AGATAC--AATATATAGTATTAGAAA
1 ATATACATAATA-ATAGTA-TA-AAA
82163592 TATATACATAA-AATAGTATAAAA
1 -ATATACATAATAATAGTATAAAA
* * *
82163615 ATATATATAACTAA-CGATATTAAA
1 ATATACATAA-TAATAG-TATAAAA
82163639 ATATACATAATAATA-TATAAAA
1 ATATACATAATAATAGTATAAAA
*
82163661 A-AT--ATAAT-AT--TAAAAAA
1 ATATACATAATAATAGTATAAAA
* *
82163678 TATATGTACATAA-CATA-TAAAAAA
1 -ATA--TACATAATAATAGTATAAAA
82163702 TATATACATAAT-ATAGTATTAAAA
1 -ATATACATAATAATAGTA-TAAAA
*
82163726 TATTTACATAATA
1 -ATATACATAATA
82163739 TACACATATT
Statistics
Matches: 136, Mismatches: 14, Indels: 41
0.71 0.07 0.21
Matches are distributed among these distances:
17 6 0.04
18 3 0.02
19 6 0.04
21 3 0.02
22 30 0.22
23 23 0.17
24 51 0.38
25 11 0.08
26 1 0.01
27 2 0.01
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (23 bp):
ATATACATAATAATAGTATAAAA
Found at i:82163676 original size:15 final size:16
Alignment explanation
Indices: 82163648--82163681 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
82163638 AATATACATA
82163648 ATAATATATAAAAAAT
1 ATAATATATAAAAAAT
82163664 ATAATAT-TAAAAAAT
1 ATAATATATAAAAAAT
82163679 ATA
1 ATA
82163682 TGTACATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATATATAAAAAAT
Found at i:82164481 original size:25 final size:25
Alignment explanation
Indices: 82164447--82164494 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
82164437 CGGTAAAAAC
82164447 ACCTAATAGTCATAAGTACATGTAT
1 ACCTAATAGTCATAAGTACATGTAT
82164472 ACCTAATAGTCATAAGTACATGT
1 ACCTAATAGTCATAAGTACATGT
82164495 TAGAGTGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (25 bp):
ACCTAATAGTCATAAGTACATGTAT
Found at i:82164882 original size:35 final size:35
Alignment explanation
Indices: 82164838--82164904 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
82164828 TTAAGTAATA
* *
82164838 TAATTTTATTTATATGATATGATGATTATTATCAT
1 TAATGTTATTTATATGATATGAAGATTATTATCAT
82164873 TAATGTTATTTATATGATATGAAGATTATTAT
1 TAATGTTATTTATATGATATGAAGATTATTAT
82164905 TATGGAATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.36, C:0.01, G:0.10, T:0.52
Consensus pattern (35 bp):
TAATGTTATTTATATGATATGAAGATTATTATCAT
Found at i:82166117 original size:47 final size:47
Alignment explanation
Indices: 82166043--82166970 Score: 1496
Period size: 47 Copynumber: 19.6 Consensus size: 47
82166033 CCCTTTGGGA
* *
82166043 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
82166090 CTTATCACATATATACACTTTCGCATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166137 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
82166184 CTTATCACATATATACACTTTCACATTTATCACGTTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166231 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166280 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166327 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166374 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* **
82166421 CTTATCACATATATACACTTTCGCATTCATCACATTGGCCATTCTGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166468 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166515 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166564 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166611 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
82166658 CTTATCACATATATACACTTTCGCATTTATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166705 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
82166754 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
82166801 CTTATCACATATATACACTTTCGCATTTATCACGTTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166848 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166897 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
82166944 CTTGTCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
82166971 TATTCAAATA
Statistics
Matches: 815, Mismatches: 58, Indels: 16
0.92 0.07 0.02
Matches are distributed among these distances:
47 642 0.79
49 173 0.21
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:82166377 original size:190 final size:188
Alignment explanation
Indices: 82166043--82166970 Score: 1505
Period size: 190 Copynumber: 4.9 Consensus size: 188
82166033 CCCTTTGGGA
* *
82166043 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* * * *
82166108 TTTCGCATTCATCACATTGGCCATTCGACCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
* * * *
82166173 GGCCATTAGGCCTTATCACATATATACACTTTCACATTTATCACGTTGGCCATTAGGC
131 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82166231 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
*
82166296 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82166361 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* **
82166421 CTTATCACATATATACACTTTCGCATTCATCACATTGGCCATTCTGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
82166486 TTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* *
82166551 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
129 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82166611 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* * * *
82166676 TTTCGCATTTATCACGTTGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
82166741 TTGGCCATTCGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82166801 CTTATCACATATATACACTTTCGCATTTATCACGTTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATAC
*
82166866 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* * *
82166931 TCGGCCATTAGGCCTTGTCACATATATACACTTTCACATT
129 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATT
82166971 TATTCAAATA
Statistics
Matches: 695, Mismatches: 39, Indels: 10
0.93 0.05 0.01
Matches are distributed among these distances:
188 98 0.14
190 555 0.80
192 42 0.06
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82166573 original size:22 final size:22
Alignment explanation
Indices: 82166545--82166620 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
82166535 TTTCACATTC
82166545 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
82166567 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
82166591 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82166614 ATCACAT
1 ATCACAT
82166621 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82166973 original size:143 final size:141
Alignment explanation
Indices: 82166043--82166970 Score: 1523
Period size: 143 Copynumber: 6.5 Consensus size: 141
82166033 CCCTTTGGGA
*
82166043 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * * *
82166108 TTTCGCATTCATCACATTGGCCATTCGACCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
*
82166173 GGCCATTAGGC
131 GGCCATTCGGC
* * *
82166184 CTTATCACATATATACACTTTCACATTTATCACGTTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
82166249 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
82166314 TCGGCCATTAGGC
129 TTGGCCATTCGGC
* *
82166327 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
82166392 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCGCATTCATCACATT
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
*
82166457 GGCCATTCTGC
131 GGCCATTCGGC
* *
82166468 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
82166533 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82166598 TTGGCCATTCGGC
129 TTGGCCATTCGGC
82166611 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * * *
82166676 TTTCGCATTTATCACGTTGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
82166741 TTGGCCATTCGGC
129 TTGGCCATTCGGC
*
82166754 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
82166819 TTTCGCATTTATCACGTTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
82166884 TTGGCCATTCGGC
129 TTGGCCATTCGGC
*
82166897 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82166962 TTTCACATT
66 TTTCACATT
82166971 TATTCAAATA
Statistics
Matches: 748, Mismatches: 33, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
141 226 0.30
143 522 0.70
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
GGCCATTCGGC
Found at i:82176170 original size:19 final size:19
Alignment explanation
Indices: 82176148--82176204 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
82176138 AATTTAAGTA
82176148 ATATAATGTTATTTATATG
1 ATATAATGTTATTTATATG
* *
82176167 ATATGATG--A-TTATTATC
1 ATATAATGTTATTTA-TATG
*
82176184 AT-TAATTTTATTTATATG
1 ATATAATGTTATTTATATG
82176202 ATA
1 ATA
82176205 CGGAGATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 10
0.65 0.12 0.23
Matches are distributed among these distances:
16 6 0.21
17 6 0.21
18 6 0.21
19 10 0.36
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.53
Consensus pattern (19 bp):
ATATAATGTTATTTATATG
Found at i:82176195 original size:35 final size:35
Alignment explanation
Indices: 82176151--82176217 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
82176141 TTAAGTAATA
*
82176151 TAATGTTATTTATATGATA-TGATGATTATTATCAT
1 TAATGTTATTTATATGATACGGA-GATTATTATCAT
*
82176186 TAATTTTATTTATATGATACGGAGATTATTAT
1 TAATGTTATTTATATGATACGGAGATTATTAT
82176218 TATGAAATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 27 0.93
36 2 0.07
ACGTcount: A:0.34, C:0.03, G:0.12, T:0.51
Consensus pattern (35 bp):
TAATGTTATTTATATGATACGGAGATTATTATCAT
Found at i:82177914 original size:12 final size:12
Alignment explanation
Indices: 82177892--82177943 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
82177882 TACTATTAAT
82177892 AATAT-TACATA
1 AATATATACATA
82177903 AATATATACATA
1 AATATATACATA
* *
82177915 TATATATA-TTA
1 AATATATACATA
82177926 AGATATATACATA
1 A-ATATATACATA
82177939 TAATA
1 -AATA
82177944 AAACATATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 7 0.21
12 20 0.61
13 5 0.15
14 1 0.03
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (12 bp):
AATATATACATA
Found at i:82177937 original size:36 final size:35
Alignment explanation
Indices: 82177893--82177962 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 35
82177883 ACTATTAATA
*
82177893 ATATTACATA-AATATATACATATA-TATATATTAAG
1 ATATTACATATAATA-AAACATATACTA-ATATTAAG
82177928 ATATATACATATAATAAAACATATACTAATATTAA
1 ATAT-TACATATAATAAAACATATACTAATATTAA
82177963 TAATAGTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
35 4 0.13
36 21 0.68
37 6 0.19
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.37
Consensus pattern (35 bp):
ATATTACATATAATAAAACATATACTAATATTAAG
Found at i:82177939 original size:18 final size:18
Alignment explanation
Indices: 82177910--82177962 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
82177900 ATAAATATAT
* *
82177910 ACATATATATATATTAAG
1 ACATATACATATATTAAA
* *
82177928 ATATATACATATAATAAA
1 ACATATACATATATTAAA
82177946 ACATATAC-TAATATTAA
1 ACATATACAT-ATATTAA
82177963 TAATAGTAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
17 1 0.04
18 27 0.96
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36
Consensus pattern (18 bp):
ACATATACATATATTAAA
Found at i:82178046 original size:20 final size:20
Alignment explanation
Indices: 82177890--82178098 Score: 74
Period size: 24 Copynumber: 9.7 Consensus size: 20
82177880 ACTACTATTA
82177890 ATAATATTACATAAATATATAC
1 ATAATATTA-A-AAATATATAC
*
82177912 ATATATATATATTAAGATATATAC
1 ATA-ATAT-TA--AAAATATATAC
* *
82177936 AT-ATAAT-AAAACATATAC
1 ATAATATTAAAAATATATAC
* *
82177954 -TAATATTAATAATAGTA-AGG
1 ATAATATTAAAAATA-TATA-C
82177974 ATAATA-TAAAAATATATAC
1 ATAATATTAAAAATATATAC
*
82177993 ATGAAATAGTAAAATATATATATATAAC
1 AT--AATA-T-TAA-A-A-ATATAT-AC
82178021 TAATAATATTAAAAATATATAC
1 --ATAATATTAAAAATATATAC
*
82178043 ATAATATATATAAAACATATAC
1 ATAATAT-TA-AAAATATATAC
*
82178065 GATATATATATTAAAAAT-GATA-
1 ---ATA-ATATTAAAAATATATAC
82178087 ATAATA-TAAAAA
1 ATAATATTAAAAA
82178099 AAACTATAAC
Statistics
Matches: 145, Mismatches: 16, Indels: 57
0.67 0.07 0.26
Matches are distributed among these distances:
17 7 0.05
18 16 0.11
19 12 0.08
20 17 0.12
21 12 0.08
22 18 0.12
23 13 0.09
24 20 0.14
25 8 0.06
26 7 0.05
27 7 0.05
28 6 0.04
30 2 0.01
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (20 bp):
ATAATATTAAAAATATATAC
Found at i:82178055 original size:29 final size:28
Alignment explanation
Indices: 82177997--82178055 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
82177987 ATATACATGA
* *
82177997 AATAGTAAAATATATATATATAACTAAT
1 AATAGTAAAATATATATACATAAATAAT
*
82178025 AATATTAAAA-ATATATACATAATATATAT
1 AATAGTAAAATATATATACATAA-ATA-AT
82178054 AA
1 AA
82178056 AACATATACG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 11 0.42
28 11 0.42
29 4 0.15
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (28 bp):
AATAGTAAAATATATATACATAAATAAT
Found at i:82178057 original size:22 final size:21
Alignment explanation
Indices: 82178023--82178094 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
82178013 TATATAACTA
82178023 ATAATAT-TA-AAAATATATAC
1 ATAATATATATAAAA-ATATAC
82178043 ATAATATATATAAAACATATAC
1 ATAATATATATAAAA-ATATAC
82178065 GAT-ATATATATTAAAAATGATA-
1 -ATAATATATA-TAAAAAT-ATAC
82178087 ATAATATA
1 ATAATATA
82178095 AAAAAAACTA
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
20 7 0.16
21 4 0.09
22 24 0.53
23 10 0.22
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (21 bp):
ATAATATATATAAAAATATAC
Found at i:82178093 original size:24 final size:22
Alignment explanation
Indices: 82178012--82178094 Score: 71
Period size: 23 Copynumber: 3.5 Consensus size: 22
82178002 TAAAATATAT
82178012 ATATATAACTA-ATAATATTAAAA
1 ATATATAA-TATAT-ATATTAAAA
82178035 ATATATACATA-ATATATATAAAA
1 ATATATA-ATATATATAT-TAAAA
**
82178058 CATATACGATATATATATTAAAA
1 -ATATATAATATATATATTAAAA
82178081 ATGATAATAATATA
1 AT-AT-ATAATATA
82178095 AAAAAAACTA
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
22 6 0.12
23 26 0.52
24 18 0.36
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATATAATATATATATTAAAA
Found at i:82178107 original size:20 final size:19
Alignment explanation
Indices: 82178021--82178107 Score: 57
Period size: 20 Copynumber: 4.2 Consensus size: 19
82178011 TATATATAAC
* *
82178021 TAATAATATTAAAAATATA
1 TAATAATATAAAAAAAATA
*
82178040 TACATAATATATATAAAACATA
1 TA-ATAATATA-A-AAAAAATA
**
82178062 TACGATATATATATTAAAAATGA
1 TA--ATA-ATATAAAAAAAAT-A
82178085 TAATAATATAAAAAAAACTA
1 TAATAATATAAAAAAAA-TA
82178105 TAA
1 TAA
82178108 CTACACTACA
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
19 2 0.04
20 21 0.40
21 5 0.09
22 14 0.26
23 6 0.11
24 5 0.09
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (19 bp):
TAATAATATAAAAAAAATA
Found at i:82178190 original size:3 final size:3
Alignment explanation
Indices: 82178175--82178216 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
82178165 ATACTAGTAC
* *
82178175 TAA TAA TAT TAA TAA TGAA T-A TAA TAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
82178217 ATATATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:82178190 original size:12 final size:11
Alignment explanation
Indices: 82178175--82178297 Score: 54
Period size: 12 Copynumber: 10.7 Consensus size: 11
82178165 ATACTAGTAC
82178175 TAATAATATTAA
1 TAATAATA-TAA
82178187 TAATGAATATAA
1 TAAT-AATATAA
*
82178199 TAATAGTAATAA
1 TAATAAT-ATAA
82178211 TAATAA-ATATA
1 TAATAATATA-A
*
82178222 TATATGCATATAA
1 TA-AT-AATATAA
* * *
82178235 TAGTAAAAAAA
1 TAATAATATAA
* * *
82178246 TGAGACATAAAA
1 TAATA-ATATAA
*
82178258 AAATAACTA-AA
1 TAATAA-TATAA
82178269 T-ATAATATAA
1 TAATAATATAA
*
82178279 TAATAATACAA
1 TAATAATATAA
*
82178290 AAATAATA
1 TAATAATA
82178298 GTGATAACAA
Statistics
Matches: 84, Mismatches: 17, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
9 2 0.02
10 10 0.12
11 29 0.35
12 32 0.38
13 8 0.10
14 3 0.04
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (11 bp):
TAATAATATAA
Found at i:82186918 original size:24 final size:24
Alignment explanation
Indices: 82186886--82186938 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
82186876 AATCACATTT
82186886 ATGTATGATAATTCAATGCACTTC
1 ATGTATGATAATTCAATGCACTTC
82186910 ATGTATGATAATTCAATGCACTTC
1 ATGTATGATAATTCAATGCACTTC
82186934 ATGTA
1 ATGTA
82186939 CCATAGACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (24 bp):
ATGTATGATAATTCAATGCACTTC
Found at i:82193814 original size:40 final size:40
Alignment explanation
Indices: 82193769--82193898 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
82193759 CGGAATACAA
82193769 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
82193809 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
82193849 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
82193889 CCGGATATAA
1 CCGGATATAA
82193899 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:82201225 original size:21 final size:22
Alignment explanation
Indices: 82201192--82201249 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 22
82201182 TAGGAATTAG
*
82201192 GGTGT-GTCGTTTTCTCCTTTT
1 GGTGTAGTCTTTTTCTCCTTTT
82201213 GGTGTAGTCTTTTTTCTCCTTTT
1 GGTGTAGTC-TTTTTCTCCTTTT
82201236 GGTGTAGTCTTTTT
1 GGTGTAGTCTTTTT
82201250 TCTCTATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 5 0.15
22 8 0.24
23 21 0.62
ACGTcount: A:0.03, C:0.16, G:0.22, T:0.59
Consensus pattern (22 bp):
GGTGTAGTCTTTTTCTCCTTTT
Found at i:82201231 original size:23 final size:23
Alignment explanation
Indices: 82201201--82201253 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
82201191 GGGTGTGTCG
82201201 TTTTCTCCTTTTGGTGTAGTCTT
1 TTTTCTCCTTTTGGTGTAGTCTT
82201224 TTTTCTCCTTTTGGTGTAGTCTT
1 TTTTCTCCTTTTGGTGTAGTCTT
82201247 TTTTCTC
1 TTTTCTC
82201254 TATTTTCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.04, C:0.19, G:0.15, T:0.62
Consensus pattern (23 bp):
TTTTCTCCTTTTGGTGTAGTCTT
Found at i:82201698 original size:25 final size:25
Alignment explanation
Indices: 82201664--82201714 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
82201654 CAGCAAGGCG
82201664 TAGGGTCGACTTGGATTAGTTTGGA
1 TAGGGTCGACTTGGATTAGTTTGGA
82201689 TAGGGTCGACTTGGATTAGTTTGGA
1 TAGGGTCGACTTGGATTAGTTTGGA
82201714 T
1 T
82201715 CATCGGAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.08, G:0.35, T:0.37
Consensus pattern (25 bp):
TAGGGTCGACTTGGATTAGTTTGGA
Found at i:82202489 original size:20 final size:19
Alignment explanation
Indices: 82202464--82202530 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
82202454 GATATGATAT
*
82202464 ACATGATTGATATTATATGC
1 ACATGATTG-TATAATATGC
*
82202484 ACATGACATGTATAATATGC
1 ACATGA-TTGTATAATATGC
*
82202504 ACATGATATGTATGGA-ATGC
1 ACATGAT-TGTAT-AATATGC
82202524 ACATGAT
1 ACATGAT
82202531 GTAATCATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 37 0.93
21 3 0.08
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATGATTGTATAATATGC
Found at i:82202622 original size:26 final size:26
Alignment explanation
Indices: 82202580--82202689 Score: 165
Period size: 26 Copynumber: 4.3 Consensus size: 26
82202570 GAGGAAGTGC
82202580 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
82202605 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
82202631 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
82202657 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
82202680 AAAAGAGGCT
1 AAAAG-GGCT
82202690 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
23 5 0.06
24 7 0.09
25 16 0.20
26 51 0.65
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:82210069 original size:47 final size:47
Alignment explanation
Indices: 82210001--82210169 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
82209991 CCTGTATATA
*
82210001 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
*
82210048 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
*
82210095 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
* *
82210142 TATATGTGGTAAGGCCGAATGGCCAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
82210170 CGAAATGTGT
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
Found at i:82210210 original size:46 final size:46
Alignment explanation
Indices: 82210143--82210232 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 46
82210133 GAACATGTAT
* * *
82210143 ATATGTGGTAAGGCCGAATGGCCAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCCAATGCGAAATATGTATGAGATAG
* * *
82210189 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCCAATGCGAAATATGTATGAGAT
82210233 GTATATATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCCAATGCGAAATATGTATGAGATAG
Found at i:82216618 original size:94 final size:94
Alignment explanation
Indices: 82216363--82216679 Score: 263
Period size: 94 Copynumber: 3.3 Consensus size: 94
82216353 ATGTCGATGC
* * * * * *
82216363 CATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAGGCTGATGCCATGTCCCAAACTTGG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTC-TCAATGTTGATGCCATGTCCCAAACATGG
* * * *
82216428 TCTTACACTAGCTCTCGTATATCCAT-GTTGATG
64 TCTTACACTAACTCTC--ATA-ACATGGTCGACG
* * ** *
82216461 TCATGTCCCAAACATGGTCTTACACT-GACAC-C-TCT-ATACGTGCCGATGCCATGTCCCAGAC
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTCTCGTCTCA-A--TGTTGATGCCATGTCCCAAAC
** * *
82216522 ATGGTCTTACACTGGCT-TACTTCACGA-GG-CTGACG
60 ATGGTCTTACACTAACTCT-CATAAC-ATGGTC-GACG
*
82216557 CATGTCCCATACATGTCTTACACTAGCTCTCGTCTCAATGTTGATGCCATGTCCCAAACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTTGATGCCATGTCCCAAACATGGTC
*
82216622 TTACACTAACTCTCATAACATGGTCGATG
66 TTACACTAACTCTCATAACATGGTCGACG
82216651 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
82216680 ACAATAACCC
Statistics
Matches: 178, Mismatches: 25, Indels: 35
0.75 0.11 0.15
Matches are distributed among these distances:
93 1 0.01
94 82 0.46
95 18 0.10
96 12 0.07
97 4 0.02
98 36 0.20
99 25 0.14
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTTGATGCCATGTCCCAAACATGGTC
TTACACTAACTCTCATAACATGGTCGACG
Found at i:82216635 original size:48 final size:48
Alignment explanation
Indices: 82216352--82216679 Score: 255
Period size: 48 Copynumber: 6.9 Consensus size: 48
82216342 ACATAGGGTT
* * * *
82216352 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATC
1 AATGTTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGT-ATC
* * * *
82216401 GAGGCTGATGCCATGTCCCAAACTTGGTCTTACACTAGCTCTCGTATATC
1 AATGTTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCG--TATC
* * *
82216451 CATGTTGATGTCATGTCCCAAACATGGTCTTACACT-GACACCTC-TAT-
1 AATGTTGATGCCATGTCCCAAACATGGTCTTACACTAG-C-TCTCGTATC
* ** * *
82216498 ACGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TAC-T-TC
1 A-ATGTTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CGTATC
* * * * *
82216545 ACGAGGCTGACG-CATGTCCCATACAT-GTCTTACACTAGCTCTCGTCTC
1 A--ATGTTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTATC
* * *
82216593 AATGTTGATGCCATGTCCCAAACATGGTCTTACACTAACTCTCATAAC
1 AATGTTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTATC
* *
82216641 -ATGGTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC
1 AAT-GTTGATGCCATGTCCCAAACATGGTCTTACACTAGCTC
82216680 ACAATAACCC
Statistics
Matches: 225, Mismatches: 39, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
46 36 0.16
47 46 0.20
48 66 0.29
49 38 0.17
50 35 0.16
51 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
AATGTTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTATC
Found at i:82216651 original size:142 final size:146
Alignment explanation
Indices: 82216353--82216674 Score: 448
Period size: 142 Copynumber: 2.2 Consensus size: 146
82216343 CATAGGGTTA
*
82216353 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAGGCTGATGCCATGTC
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAGGCTGACGCCATGTC
* * *
82216418 CCAAACTTGGTCTTACACTAGCTCTCGTATATCCATGTTGATGTCATGTCCCAAACATGGTCTTA
66 CCAAACATGGTCTTACACTAGCTCTCG-ATATCAATGTTGATGCCATGTCCCAAACATGGTCTTA
82216483 CACTGACACCTCTATAC
130 CACTGACACCTCTATAC
* * *
82216500 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACTTCA-CGAGGCTGACG-CATGT
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CGTCATCGAGGCTGACGCCATGT
* *
82216562 CCCATACAT-GTCTTACACTAGCTCTCG-TCTCAATGTTGATGCCATGTCCCAAACATGGTCTTA
65 CCCAAACATGGTCTTACACTAGCTCTCGATATCAATGTTGATGCCATGTCCCAAACATGGTCTTA
82216625 CACT-A-A-CTCTCATAAC
130 CACTGACACCTCT-AT-AC
82216641 ATGGTCGATG-CATGTCCCAGACAT-GTCTTACACT
1 AT-GTCGATGCCATGTCCCAGACATGGTCTTACACT
82216675 AGCTCACAAT
Statistics
Matches: 160, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
139 4 0.03
140 13 0.08
141 18 0.11
142 43 0.27
144 18 0.11
145 12 0.08
146 11 0.07
147 41 0.26
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (146 bp):
ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAGGCTGACGCCATGTC
CCAAACATGGTCTTACACTAGCTCTCGATATCAATGTTGATGCCATGTCCCAAACATGGTCTTAC
ACTGACACCTCTATAC
Found at i:82222456 original size:20 final size:20
Alignment explanation
Indices: 82222431--82222469 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82222421 AGGGACTAAA
* *
82222431 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
82222451 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
82222470 TATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:82226388 original size:40 final size:40
Alignment explanation
Indices: 82226333--82226550 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
82226323 TATTCGAATG
82226333 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
82226373 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
82226412 ATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
82226451 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
82226491 ATATCCGGGCTAAG-ACCGAA-GTATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
82226529 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82226551 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
37 6 0.04
38 50 0.30
39 32 0.19
40 78 0.47
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:82226469 original size:78 final size:80
Alignment explanation
Indices: 82226333--82226550 Score: 349
Period size: 78 Copynumber: 2.8 Consensus size: 80
82226323 TATTCGAATG
*
82226333 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGGCA
82226398 TTTGTG-TAGTGACT
66 TTTGTGCTAGTGACT
82226412 ATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGGCA
82226476 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* * *
82226491 ATATCCGGGCTAAG-ACCGAA-GTATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAATCCCGAAGG
82226551 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 4, Indels: 8
0.92 0.03 0.06
Matches are distributed among these distances:
77 16 0.12
78 84 0.64
79 23 0.17
80 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:82234438 original size:40 final size:40
Alignment explanation
Indices: 82234383--82234604 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
82234373 TATTCGAATG
*
82234383 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
82234423 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
82234463 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
82234503 ATATCCGGGTTAAATCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
82234543 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
82234583 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82234605 TACTTGGGTT
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:82236461 original size:39 final size:39
Alignment explanation
Indices: 82236414--82236596 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
82236404 AATGTTCGAG
82236414 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
82236453 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
82236492 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
82236531 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
82236571 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
82236597 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:82242435 original size:39 final size:39
Alignment explanation
Indices: 82242388--82242570 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
82242378 AATGTTCGAG
82242388 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
82242427 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
82242466 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
82242505 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
82242545 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
82242571 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:82245658 original size:40 final size:40
Alignment explanation
Indices: 82245568--82245788 Score: 227
Period size: 40 Copynumber: 5.5 Consensus size: 40
82245558 CTCAAGTAAT
* * * *
82245568 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
82245606 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
82245646 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
82245686 CATCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATAC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
82245726 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
82245767 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
82245789 CATCCGAATA
Statistics
Matches: 148, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
38 11 0.07
39 18 0.12
40 90 0.61
41 26 0.18
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:82255102 original size:18 final size:19
Alignment explanation
Indices: 82255081--82255119 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
82255071 TTTCAATGAT
82255081 TTAACA-GACATCAAAATC
1 TTAACATGACATCAAAATC
* *
82255099 TTAACATGGCATGAAAATC
1 TTAACATGACATCAAAATC
82255118 TT
1 TT
82255120 GAGATGATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.28
Consensus pattern (19 bp):
TTAACATGACATCAAAATC
Found at i:82255183 original size:42 final size:42
Alignment explanation
Indices: 82255122--82255202 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
82255112 AAAATCTTGA
*
82255122 GATGATATAATAATGACTTGAAAGAATATTGCTTGATGAACT
1 GATGATATAATAATAACTTGAAAGAATATTGCTTGATGAACT
82255164 GATGATATAATAATAACTTGAAAGAATATTGCTTGATGA
1 GATGATATAATAATAACTTGAAAGAATATTGCTTGATGA
82255203 GCTCATCTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (42 bp):
GATGATATAATAATAACTTGAAAGAATATTGCTTGATGAACT
Found at i:82265531 original size:12 final size:12
Alignment explanation
Indices: 82265514--82265538 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82265504 ATTTTCTGTA
82265514 TAAAAAATATTT
1 TAAAAAATATTT
82265526 TAAAAAATATTT
1 TAAAAAATATTT
82265538 T
1 T
82265539 TTACAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAAAAATATTT
Found at i:82265764 original size:7 final size:8
Alignment explanation
Indices: 82265747--82265773 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
82265737 TCCTAATTGC
82265747 TTTCTTTT
1 TTTCTTTT
82265755 TTTCTTTT
1 TTTCTTTT
82265763 TTTCTTTT
1 TTTCTTTT
82265771 TTT
1 TTT
82265774 GATAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTCTTTT
Found at i:82267182 original size:88 final size:88
Alignment explanation
Indices: 82267071--82267250 Score: 256
Period size: 88 Copynumber: 2.0 Consensus size: 88
82267061 TCTTTTTTTT
* *
82267071 TTTTTTTACATTCATTTAGGTACTTGAACTTTCAAAATGCATCAAAAAAAACCTCAAA-TCTTTT
1 TTTTTTTACACTCATTGAGGTACTTGAACTTTCAAAATGCATCAAAAAAAACCTCAAACT-TTTT
*
82267135 CAAAAAAAGCAATTAAGCCCCTAC
65 CAAAAAAAGCAATCAAGCCCCTAC
***
82267159 TTTTTTTACACTCAATTGA-GTACTTGAACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTTTT
1 TTTTTTTACACTC-ATTGAGGTACTTGAACTTTCAAAATGCATCAAAAAAAACCTCAAACTTTTT
* *
82267223 CAGAAAAAGCAATCAAGCCCCTGC
65 CAAAAAAAGCAATCAAGCCCCTAC
82267247 TTTT
1 TTTT
82267251 ATTAAAAAAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
88 77 0.94
89 5 0.06
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.33
Consensus pattern (88 bp):
TTTTTTTACACTCATTGAGGTACTTGAACTTTCAAAATGCATCAAAAAAAACCTCAAACTTTTTC
AAAAAAAGCAATCAAGCCCCTAC
Found at i:82272788 original size:86 final size:82
Alignment explanation
Indices: 82272607--82272809 Score: 214
Period size: 86 Copynumber: 2.4 Consensus size: 82
82272597 GTTTAATTTT
** *
82272607 TTATTTTTTTTGAAAACTTTTGAGGGTCTTTTTGATGCATTTTGAAAGTCCAAGTACCCAATTGA
1 TTATTTTTTTTGAAAAAGTTTGAGGG-CTTTTTAATGCATTTTGAAAGTCCAAGTACCCAATTGA
* *
82272672 GTAAAAAAAAGTAGGGGC
65 GAAAAAAAAAATAGGGGC
* * *
82272690 TTAATTCGTTTTTTGAAAAAGTTTGAGGGCATTTTTAATGCATTTTGAAAGTTCAAGTGCTCAAT
1 TT-ATT--TTTTTTGAAAAAGTTTGAGGGC-TTTTTAATGCATTTTGAAAGTCCAAGTACCCAAT
82272755 TGAATGCAAAAAAAAAATGAGGGGC
62 TG-A-G-AAAAAAAAAAT-AGGGGC
**
82272780 TT-TTTTTTTT--TTAAGTTTGAGGGCTTTTTA
1 TTATTTTTTTTGAAAAAGTTTGAGGGCTTTTTA
82272810 CACCCTTAAG
Statistics
Matches: 102, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
83 8 0.08
84 15 0.15
85 1 0.01
86 57 0.56
87 1 0.01
88 3 0.03
89 9 0.09
90 8 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (82 bp):
TTATTTTTTTTGAAAAAGTTTGAGGGCTTTTTAATGCATTTTGAAAGTCCAAGTACCCAATTGAG
AAAAAAAAAATAGGGGC
Found at i:82273969 original size:16 final size:17
Alignment explanation
Indices: 82273948--82273980 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
82273938 TTTTATTGTT
82273948 TATTATAATAAT-TTTA
1 TATTATAATAATGTTTA
*
82273964 TATTATATTAATGTTTA
1 TATTATAATAATGTTTA
82273981 GGATTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TATTATAATAATGTTTA
Found at i:82274089 original size:16 final size:17
Alignment explanation
Indices: 82274059--82274103 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
82274049 ATGTATGTAT
*
82274059 TTTTTAGTTTATAATAA
1 TTTTTAGATTATAATAA
82274076 TTTTTAGATT-TAAT-A
1 TTTTTAGATTATAATAA
*
82274091 -TTTAAGATTATAA
1 TTTTTAGATTATAA
82274104 AATAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 8 0.32
15 4 0.16
16 4 0.16
17 9 0.36
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (17 bp):
TTTTTAGATTATAATAA
Found at i:82275813 original size:27 final size:27
Alignment explanation
Indices: 82275790--82275988 Score: 222
Period size: 27 Copynumber: 7.4 Consensus size: 27
82275780 TGACACAGAA
82275790 GCTATTCTTTCATAATTCGCCACAAAG
1 GCTATTCTTTCATAATTCGCCACAAAG
82275817 GCTATTCTTTCATAATAT-GCCACAAAG
1 GCTATTCTTTCATAAT-TCGCCACAAAG
* * *
82275844 GTTATTCCTTCATAGTTCGCCACAAAG
1 GCTATTCTTTCATAATTCGCCACAAAG
* * *
82275871 GTTGTTCTTTCATAATACGCCACAAAG
1 GCTATTCTTTCATAATTCGCCACAAAG
* *
82275898 GCTATTCTTTCATAGTTCACCACAAAG
1 GCTATTCTTTCATAATTCGCCACAAAG
* * *
82275925 GTTATTCTTTCGTAATACGCCACAAAG
1 GCTATTCTTTCATAATTCGCCACAAAG
* * * *
82275952 GTTTTTCTTTTA-AACTTCACCACAAAG
1 GCTATTCTTTCATAA-TTCGCCACAAAG
*
82275979 GTTATTCTTT
1 GCTATTCTTT
82275989 TGTAATACAA
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
26 3 0.02
27 142 0.97
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (27 bp):
GCTATTCTTTCATAATTCGCCACAAAG
Found at i:82275884 original size:81 final size:81
Alignment explanation
Indices: 82275794--82275988 Score: 259
Period size: 81 Copynumber: 2.4 Consensus size: 81
82275784 ACAGAAGCTA
*
82275794 TTCTTTCATAATTCGCCACAAAGGCTATTCTTTCATAATAT-GCCACAAAGGTTATTCCTTCATA
1 TTCTTTCATAATTCGCCACAAAGGCTATTCTTTCATAAT-TCACCACAAAGGTTATTCCTTCATA
* *
82275858 GTTCGCCACAAAGGTTG
65 ATACGCCACAAAGGTTG
* * * *
82275875 TTCTTTCATAATACGCCACAAAGGCTATTCTTTCATAGTTCACCACAAAGGTTATTCTTTCGTAA
1 TTCTTTCATAATTCGCCACAAAGGCTATTCTTTCATAATTCACCACAAAGGTTATTCCTTCATAA
*
82275940 TACGCCACAAAGGTTT
66 TACGCCACAAAGGTTG
* * *
82275956 TTCTTTTA-AACTTCACCACAAAGGTTATTCTTT
1 TTCTTTCATAA-TTCGCCACAAAGGCTATTCTTT
82275989 TGTAATACAA
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
80 3 0.03
81 97 0.97
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (81 bp):
TTCTTTCATAATTCGCCACAAAGGCTATTCTTTCATAATTCACCACAAAGGTTATTCCTTCATAA
TACGCCACAAAGGTTG
Found at i:82275996 original size:54 final size:54
Alignment explanation
Indices: 82275792--82275988 Score: 277
Period size: 54 Copynumber: 3.6 Consensus size: 54
82275782 ACACAGAAGC
* * * *
82275792 TATTCTTTCATAATTCGCCACAAAGGCTATTCTTTCATAATATGCCACAAAGGT
1 TATTCTTTCATAGTTCACCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
* * * *
82275846 TATTCCTTCATAGTTCGCCACAAAGGTTGTTCTTTCATAATACGCCACAAAGGC
1 TATTCTTTCATAGTTCACCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
*
82275900 TATTCTTTCATAGTTCACCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGT
1 TATTCTTTCATAGTTCACCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
* * * *
82275954 TTTTCTTTTAAACTTCACCACAAAGGTTATTCTTT
1 TATTCTTTCATAGTTCACCACAAAGGTTATTCTTT
82275989 TGTAATACAA
Statistics
Matches: 128, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 128 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (54 bp):
TATTCTTTCATAGTTCACCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
Found at i:82276014 original size:54 final size:54
Alignment explanation
Indices: 82275790--82276016 Score: 231
Period size: 54 Copynumber: 4.2 Consensus size: 54
82275780 TGACACAGAA
* * * * *
82275790 GCTATTCTTTCATAA-TTCGCCACAAAGGCTATTCTTTCATAATATGCCACAAAG
1 GCTATTCTTTTA-AACTTCACCACAAAGGTTATTCTTTCGTAATACGCCACAAAG
* * * * * * * *
82275844 GTTATTCCTTCATAGTTCGCCACAAAGGTTGTTCTTTCATAATACGCCACAAAG
1 GCTATTCTTTTAAACTTCACCACAAAGGTTATTCTTTCGTAATACGCCACAAAG
* * *
82275898 GCTATTCTTTCATAGTTCACCACAAAGGTTATTCTTTCGTAATACGCCACAAAG
1 GCTATTCTTTTAAACTTCACCACAAAGGTTATTCTTTCGTAATACGCCACAAAG
* * * ** * *
82275952 GTTTTTCTTTTAAACTTCACCACAAAGGTTATTCTTTTGTAATACAACTCAAGG
1 GCTATTCTTTTAAACTTCACCACAAAGGTTATTCTTTCGTAATACGCCACAAAG
82276006 GCTATTCTTTT
1 GCTATTCTTTT
82276017 CTAGCGTGTT
Statistics
Matches: 149, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 1 0.01
54 148 0.99
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (54 bp):
GCTATTCTTTTAAACTTCACCACAAAGGTTATTCTTTCGTAATACGCCACAAAG
Done.