Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 265 of 438
Found at i:82278843 original size:19 final size:19
Alignment explanation
Indices: 82278814--82278869 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
82278804 AGCAAAAATT
* *
82278814 AAAAGCTTCAACATAAACC
1 AAAAACTTCAACAGAAACC
* *
82278833 CAAAACTTCAATAGAAACC
1 AAAAACTTCAACAGAAACC
82278852 AAAAACTTCAACAGAAAC
1 AAAAACTTCAACAGAAAC
82278870 AAATTTTTGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.55, C:0.25, G:0.05, T:0.14
Consensus pattern (19 bp):
AAAAACTTCAACAGAAACC
Found at i:82288217 original size:32 final size:32
Alignment explanation
Indices: 82288176--82288276 Score: 150
Period size: 32 Copynumber: 3.1 Consensus size: 32
82288166 TTTCTTCTTG
82288176 ACATTCCAGCTCCTGTCTAGCAACAAACACCC
1 ACATTCCAGCTCCTGTCTAGCAACAAACACCC
82288208 ACATTCCAGCTCCTGTCTAGCAACAAA-ACACC
1 ACATTCCAGCTCCTGTCTAGCAACAAACAC-CC
* * *
82288240 ACATTCCAGCTCCTGTCCAGCAGCAAAACACTC
1 ACATTCCAGCTCCTGTCTAGCAAC-AAACACCC
82288273 ACAT
1 ACAT
82288277 CACCAAACAC
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
31 2 0.03
32 51 0.81
33 8 0.13
34 2 0.03
ACGTcount: A:0.33, C:0.39, G:0.10, T:0.19
Consensus pattern (32 bp):
ACATTCCAGCTCCTGTCTAGCAACAAACACCC
Found at i:82295019 original size:18 final size:18
Alignment explanation
Indices: 82294996--82295049 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
82294986 CCACCACCAA
82294996 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
82295014 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
82295026 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
82295044 CTCCAC
1 CTCCAC
82295050 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:82295022 original size:30 final size:30
Alignment explanation
Indices: 82294986--82295084 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
82294976 CTAGCCTTTG
82294986 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
82295016 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
82295046 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
82295076 CCACCACCA
1 CCACCACCA
82295085 CTTGTACCTA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.25, C:0.51, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:82295676 original size:47 final size:48
Alignment explanation
Indices: 82295556--82295676 Score: 106
Period size: 47 Copynumber: 2.6 Consensus size: 48
82295546 TTGTTATTAT
* * * *
82295556 TATATTTTTAATATTATATTATATATATATTCTTTTAATATATTAGGTA
1 TATATCTTTAATACTATATTAT-TATATATTATTATAATATATTAGGTA
* * * * * *
82295605 TAT-TC-TAAATTCTATA-TACGTATATA-TATTATACTATTTTATGTA
1 TATATCTTTAATACTATATTA-TTATATATTATTATAATATATTAGGTA
82295650 TATATCTTTAATACTATATTATTATAT
1 TATATCTTTAATACTATATTATTATAT
82295677 TTTTTTTCTA
Statistics
Matches: 55, Mismatches: 13, Indels: 10
0.71 0.17 0.13
Matches are distributed among these distances:
45 17 0.31
46 10 0.18
47 22 0.40
48 3 0.05
49 3 0.05
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (48 bp):
TATATCTTTAATACTATATTATTATATATTATTATAATATATTAGGTA
Found at i:82295715 original size:21 final size:21
Alignment explanation
Indices: 82295691--82295730 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82295681 TTTCTACATG
*
82295691 TTATCTTATGTATATATTTAA
1 TTATATTATGTATATATTTAA
*
82295712 TTATATTATGTATGTATTT
1 TTATATTATGTATATATTT
82295731 TTTACACTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (21 bp):
TTATATTATGTATATATTTAA
Found at i:82295846 original size:25 final size:24
Alignment explanation
Indices: 82295818--82295873 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
82295808 GTTATATTTT
*
82295818 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
82295843 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
82295866 CACTATTA
1 CACTATTA
82295874 CTATTTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:82302475 original size:23 final size:24
Alignment explanation
Indices: 82302432--82302477 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
82302422 GGAAGATTTA
*
82302432 TTGGTTGCCACAGCTTCTTTTGGC
1 TTGGTTGCCACAGCATCTTTTGGC
82302456 TTGGTT-CCACAGTCAT-TTTTGG
1 TTGGTTGCCACAG-CATCTTTTGG
82302478 AAGGTGGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.11, C:0.22, G:0.24, T:0.43
Consensus pattern (24 bp):
TTGGTTGCCACAGCATCTTTTGGC
Found at i:82311311 original size:17 final size:16
Alignment explanation
Indices: 82311287--82311318 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
82311277 AGGGTATCTT
82311287 AAAAAAAAAAGAAAAG
1 AAAAAAAAAAGAAAAG
82311303 AAAAGAAAAAAGAAAA
1 AAAA-AAAAAAGAAAA
82311319 AGAGAGAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAAAAG
Found at i:82312313 original size:90 final size:88
Alignment explanation
Indices: 82312183--82312628 Score: 304
Period size: 88 Copynumber: 4.8 Consensus size: 88
82312173 TATTTCTATC
*
82312183 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACG-CTGAGGTATTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GG-CACACGTC-GAGGTATTT
82312247 TCAATTTTCGT-TTTTTCAATTTATGCT
63 TCAA-TTTC-TATTTTTCAATTTATGCT
** *
82312274 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGTCGAGGTATTTTTA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGCACACGTCGAGGTATTTTCA
*
82312338 ATTTCTATTTTTCAATTTCTGCTTTT
66 ATTTCTATTTTTCAATTTATGC---T
* * *
82312364 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACGGCACGC-T-G
1 --TTTC-------AAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCT--CGGCACACGTCG
* * *
82312427 AGGTATTTTCAATTTCTGTTTTTCAATTTTTGCC
55 AGGTATTTTCAATTTCTATTTTTCAATTTATGCT
* * *
82312461 TTACAAATTCTGCTTTTCAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-ACACG-C
1 TTTCAAA-----------AAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GGCACACGTC
*
82312524 TGAGGTATTTT-AATTTTCGT-TTTTTTAATTTATG-T
54 -GAGGTATTTTCAA-TTTC-TATTTTTCAATTTATGCT
* * * *
82312559 TTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-ACACG-CTGAGGTAATT
1 TT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GGCACACGTC-GAGGTATTT
82312622 TCAATTT
63 TCAATTT
82312629 TTGTTTGTCA
Statistics
Matches: 294, Mismatches: 25, Indels: 75
0.75 0.06 0.19
Matches are distributed among these distances:
86 1 0.00
87 18 0.06
88 74 0.25
89 5 0.02
90 38 0.13
91 4 0.01
92 4 0.01
95 3 0.01
97 4 0.01
98 6 0.02
99 63 0.21
100 68 0.23
101 1 0.00
102 5 0.02
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (88 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGCACACGTCGAGGTATTTTCA
ATTTCTATTTTTCAATTTATGCT
Found at i:82312354 original size:14 final size:13
Alignment explanation
Indices: 82312330--82312376 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
82312320 CACGTCGAGG
82312330 TATTTTTAATTTC
1 TATTTTTAATTTC
82312343 TATTTTTCAATTTC
1 TATTTTT-AATTTC
**
82312357 TGCTTTTAATTTC
1 TATTTTTAATTTC
*
82312370 TGTTTTT
1 TATTTTT
82312377 CAAAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.17, C:0.11, G:0.04, T:0.68
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:82312441 original size:100 final size:99
Alignment explanation
Indices: 82312244--82312628 Score: 408
Period size: 100 Copynumber: 4.0 Consensus size: 99
82312234 CGCTGAGGTA
* *
82312244 TTTTCAATTTTCGTTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCT
1 TTTTCAATTTT-G-CTTTT-AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * *
82312309 GAGCCTCGGGGCACG-TCGAGGTATTTTTAATTTCTAT
63 GAGCCTCAGGACACGCT-GAGGTATTTTCAATTTCTAT
* *
82312346 TTTTCAATTTCTGCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTT-TGCTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
82312411 GCCTCACGG-CACGCTGAGGTATTTTCAATTTCTGT
65 GCCTCA-GGACACGCTGAGGTATTTTCAATTTCTAT
** * * *
82312446 TTTTCAATTTTTGCCTTACAAATTCTGCTTTTC--AAATCAACTCATATTGTGAGAGGTGAGTTG
1 TTTTCAA-TTTTG-CTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
82312509 AGCCTCAGGACACGCTGAGGTATTTT--A-----A-
64 AGCCTCAGGACACGCTGAGGTATTTTCAATTTCTAT
* * *
82312537 TTTTC--GTTT--TTTTAATTTATG-TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTG
1 TTTTCAATTTTGCTTTTAATTTATGCTTT-T-CAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
82312597 AGCCTCAGGACACGCTGAGGTAATTTCAATTT
64 AGCCTCAGGACACGCTGAGGTATTTTCAATTT
82312629 TTGTTTGTCA
Statistics
Matches: 246, Mismatches: 22, Indels: 39
0.80 0.07 0.13
Matches are distributed among these distances:
84 3 0.01
85 9 0.04
88 56 0.23
90 1 0.00
91 5 0.02
97 1 0.00
98 2 0.01
99 52 0.21
100 80 0.33
101 25 0.10
102 11 0.04
103 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (99 bp):
TTTTCAATTTTGCTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGGACACGCTGAGGTATTTTCAATTTCTAT
Found at i:82312749 original size:75 final size:74
Alignment explanation
Indices: 82312545--82313153 Score: 793
Period size: 73 Copynumber: 8.3 Consensus size: 74
82312535 AATTTTCGTT
* * * * * *
82312545 TTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
82312610 GCTGAGGTA
66 GTTGAGGTA
* * * * *
82312619 ATTTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
82312683 GTTGAGGTA
66 GTTGAGGTA
* * *
82312692 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
82312757 CGTTGAGGTA
65 CGTTGAGGTA
* * *
82312767 ATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
82312831 GTTGAGGTA
66 GTTGAGGTA
** * *
82312840 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGT-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
82312905 CGTTGAGGTA
65 CGTTGAGGTA
* *
82312915 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--AC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
82312978 GCTGAGGTA
66 GTTGAGGTA
* * *
82312987 -CTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
82313050 GTTGAGGTA
66 GTTGAGGTA
* * * *
82313059 TTTTAAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
1 TTTTCAATTTCTGTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
* * *
82313122 ACGCTGAAGTG
64 ACGTTGAGGTA
* *
82313133 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
82313154 TTTCTGTGTT
Statistics
Matches: 469, Mismatches: 56, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
70 39 0.08
71 15 0.03
72 22 0.05
73 141 0.30
74 82 0.17
75 131 0.28
76 39 0.08
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GTTGAGGTA
Found at i:82312831 original size:148 final size:149
Alignment explanation
Indices: 82312545--82313153 Score: 808
Period size: 148 Copynumber: 4.1 Consensus size: 149
82312535 AATTTTCGTT
* * * * *
82312545 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * * *
82312609 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGC
66 CGTTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
82312673 CTCAAGACACGTTGAGGTA
131 CTCAAGACACGTTGAGGTA
* * *
82312692 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
82312757 CGTTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 CGTTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
82312821 CTCAAGACACGTTGAGGTA
131 CTCAAGACACGTTGAGGTA
* * * *
82312840 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
82312905 CGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAAC
66 CGTTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
*
82312970 CTCAAG--ACGCTGAGGTA
131 CTCAAGACACGTTGAGGTA
* * *
82312987 -CTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
82313049 CGTTGAGGTATTTTAAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTG
66 CGTTGAGGTAATTTCAATTTCTGT-TTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
82313113 AACCTCAAG--ACGCTGAAGTG
128 AACCTCAAGACACGTTGAGGTA
* *
82313133 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
82313154 TTTCTGTGTT
Statistics
Matches: 415, Mismatches: 39, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
144 67 0.16
145 2 0.00
146 62 0.15
147 37 0.09
148 208 0.50
149 39 0.09
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (149 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGTTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
CTCAAGACACGTTGAGGTA
Found at i:82313260 original size:15 final size:14
Alignment explanation
Indices: 82313224--82313256 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
82313214 CGCTGAGGTA
82313224 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
82313238 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
82313252 TTTTC
1 TTTTC
82313257 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:82313272 original size:91 final size:90
Alignment explanation
Indices: 82313122--82313612 Score: 366
Period size: 91 Copynumber: 5.3 Consensus size: 90
82313112 GAACCTCAAG
* * * * * * *
82313122 ACGCTGAAGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGC
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
*
82313187 GAGTGGTGAGTTGAGCCTTGACTCAC
66 GAGAGGTGAGTTGAGCCTTGA-TCAC
* *
82313213 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* * **
82313277 CGAGAGGTGAGTTCAGCC-TCAGGAC
65 CGAGAGGTGAGTTGAGCCTTGATCAC
* * * *
82313302 ACGCTGAGATATTTTCAATTTCTTTTTTTTTCAATTTATGTTTGTCAAAAAAATTAACTCATATT
1 ACGCTGAGGTATTTTCAATTTC--TGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATT
* *
82313367 GTGAGAGGTGAGTTGAGCCTCAGATCAC
64 GCGAGAGGTGAGTTGAGCCT-TGATCAC
* * * * * * * **
82313395 ACGCCGAGGTATTTTCAATTGATTTTTATTTTTATTTTTTTTCAATTTATGCTTTGCAAAAATCA
1 ACGCTGAGGTATTTTCAATT--TCTGT-TTTTCAATTTATGT---TTT-T-C---AAAAAAATCA
* * *
82313460 ACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCAC
55 ACTCATATTGCGAGAGGTGAGTTGAGCCT-TGATCAC
** * ** * *
82313497 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTT-T-ATTTT---AAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* *
82313557 CGAGAAGTGAGTTGAGCCTTGGCTCAC
65 CGAGAGGTGAGTTGAGCCTT-GATCAC
** *
82313584 GTGCTGAGCTATTTTCAATTTCTGTTTTT
1 ACGCTGAGGTATTTTCAATTTCTGTTTTT
82313613 AATGTTTAGT
Statistics
Matches: 320, Mismatches: 61, Indels: 42
0.76 0.14 0.10
Matches are distributed among these distances:
87 62 0.19
89 22 0.07
90 7 0.02
91 114 0.36
92 5 0.02
93 24 0.08
94 11 0.03
95 4 0.01
97 2 0.01
98 1 0.00
99 5 0.02
100 7 0.02
102 56 0.17
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (90 bp):
ACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGATCAC
Found at i:82313382 original size:182 final size:178
Alignment explanation
Indices: 82313080--82313412 Score: 447
Period size: 182 Copynumber: 1.8 Consensus size: 178
82313070 TGTCTTTCAA
* * * * *
82313080 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAAGTGTTTTCCATTTCT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAACACGCTGAAGTATTTTCAATTTCT
* * * *
82313145 GTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGAC
66 GTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-
*
82313209 TCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
130 TCACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
*
82313258 AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGCTG-AGATATTTTCAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCA--ACACGCTGAAG-TATTTTCAATT
* * * *
82313322 TCTTTTTTTTTCAATTTATGT-TTGTCAAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCC
63 TC--TGTTCTTCAATTTATGTGTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
82313386 TCAGATCACACGCCGAGGTATTTTCAA
125 TCAGATCACACGCCGAGGTATTTTCAA
82313413 TTGATTTTTA
Statistics
Matches: 133, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
178 37 0.28
179 2 0.02
180 18 0.14
181 2 0.02
182 72 0.54
183 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (178 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAACACGCTGAAGTATTTTCAATTTCT
GTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
CACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
Found at i:82313497 original size:102 final size:103
Alignment explanation
Indices: 82313325--82313514 Score: 285
Period size: 102 Copynumber: 1.8 Consensus size: 103
82313315 TTCAATTTCT
* **
82313325 TTTTTTTTCAATTTATGTTTGTCAAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
1 TTTTTTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
*
82313390 ATCACACGCCGAGGTATTTTCAATTGATTTTTATTTTTA
65 ATCACACACCGAGGTATTTTCAATTGATTTTTATTTTTA
*
82313429 TTTTTTTTCAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
1 TTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
* *
82313492 GTCACATACCGAGGTATTTTCAA
65 ATCACACACCGAGGTATTTTCAA
82313515 AATCTGTTTT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
102 56 0.72
104 18 0.23
105 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (103 bp):
TTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGA
TCACACACCGAGGTATTTTCAATTGATTTTTATTTTTA
Found at i:82313567 original size:87 final size:87
Alignment explanation
Indices: 82313452--82313657 Score: 245
Period size: 87 Copynumber: 2.4 Consensus size: 87
82313442 TATGCTTTGC
* * * *
82313452 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
82313517 TCTGTTTTACAAAT-TTTA-TTTT
66 TCTGTTTT--AAATGTTTAGTTTT
* * * * **
82313539 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
*
82313604 TCTGTTTTTAATGTTTAGTTTT
66 TCTGTTTTAAATGTTTAGTTTT
* * *
82313626 AAAGAGTCAATTCATATTGCGAGAAATGAGTT
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTT
82313658 AAGCTCAGGA
Statistics
Matches: 102, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
85 3 0.03
86 4 0.04
87 70 0.69
88 25 0.25
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
TCTGTTTTAAATGTTTAGTTTT
Found at i:82314327 original size:30 final size:30
Alignment explanation
Indices: 82314291--82314389 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
82314281 CTAGCCTTTG
*
82314291 CCACCACCAACTCTACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
82314321 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
82314351 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
82314381 CCACCACCA
1 CCACCACCA
82314390 CTTGTACTTA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:82315044 original size:22 final size:23
Alignment explanation
Indices: 82315014--82315080 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 23
82315004 TTTCTACATG
*
82315014 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
82315036 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
82315061 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
82315081 TTTTATATCT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:82315172 original size:25 final size:24
Alignment explanation
Indices: 82315144--82315199 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
82315134 GTTATATTTT
*
82315144 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
82315169 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
82315192 CACTATTA
1 CACTATTA
82315200 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:82316303 original size:26 final size:26
Alignment explanation
Indices: 82316242--82316304 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
82316232 TTCTGACAAC
*
82316242 TGTTATTTTCTTTTCTATTTTTATTT
1 TGTTTTTTTCTTTTCTATTTTTATTT
* *
82316268 T-TCTTGTTTCTTTTCCTCTTTTT-TTT
1 TGT-TTTTTTCTTTT-CTATTTTTATTT
82316294 TGTTTTTTTCT
1 TGTTTTTTTCT
82316305 AGGTTGATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
25 1 0.03
26 21 0.70
27 8 0.27
ACGTcount: A:0.05, C:0.13, G:0.05, T:0.78
Consensus pattern (26 bp):
TGTTTTTTTCTTTTCTATTTTTATTT
Found at i:82321015 original size:47 final size:46
Alignment explanation
Indices: 82320886--82321016 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 46
82320876 TAGCCCAGCC
82320886 ATGGTCTTATACGG-ATCACATATCACACTGATGCCATATCCAAGAT
1 ATGGTCTTATACGGAATCACATATCACA-TGATGCCATATCCAAGAT
* * * * * *
82320932 ATGGTCTTACACAGAAGCATATATCACATCGATGCCATATCCCATAT
1 ATGGTCTTATACGGAATCACATATCACAT-GATGCCATATCCAAGAT
*
82320979 ATGGTCTTATACGGAAATCACATATCACATGTTGCCAT
1 ATGGTCTTATACGG-AATCACATATCACATGATGCCAT
82321017 GGTCCACCCA
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
46 13 0.18
47 45 0.63
48 13 0.18
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (46 bp):
ATGGTCTTATACGGAATCACATATCACATGATGCCATATCCAAGAT
Found at i:82329365 original size:41 final size:41
Alignment explanation
Indices: 82329290--82329367 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
82329280 ATAAAAATTT
* *
82329290 ATTTATTTAAGTTAAATTAATGGATTAATTAACTATAATAA
1 ATTTATTTAACTTAAATTAATGGATTAATAAACTATAATAA
*
82329331 ATTTAATTTAACTTAAA-TAATGGCTTTAA-AAACTATA
1 ATTT-ATTTAACTTAAATTAATGG-ATTAATAAACTATA
82329368 GAAATTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 17 0.53
42 15 0.47
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.42
Consensus pattern (41 bp):
ATTTATTTAACTTAAATTAATGGATTAATAAACTATAATAA
Found at i:82329461 original size:2 final size:2
Alignment explanation
Indices: 82329454--82329482 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
82329444 TACCTTATTT
82329454 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82329483 TATTATTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82330660 original size:24 final size:25
Alignment explanation
Indices: 82330633--82330680 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
82330623 TTTATTCATG
82330633 TTGTTTC-GATTTTTTATTTTAATT
1 TTGTTTCAGATTTTTTATTTTAATT
*
82330657 TTGTTTCAAGCTTTTTTATTTTAA
1 TTGTTTC-AGATTTTTTATTTTAA
82330681 CTTCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
26 14 0.67
ACGTcount: A:0.19, C:0.06, G:0.08, T:0.67
Consensus pattern (25 bp):
TTGTTTCAGATTTTTTATTTTAATT
Found at i:82330762 original size:13 final size:13
Alignment explanation
Indices: 82330746--82330770 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82330736 TTATTTTCTA
82330746 ATTTTTAATTAAC
1 ATTTTTAATTAAC
82330759 ATTTTTAATTAA
1 ATTTTTAATTAA
82330771 AAAACATGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTTAATTAAC
Found at i:82331219 original size:72 final size:72
Alignment explanation
Indices: 82331078--82331226 Score: 172
Period size: 72 Copynumber: 2.1 Consensus size: 72
82331068 TGTATTTACT
* * * * * * * *
82331078 AAAAATAATGATATTTGAAATAATTAATTAATTTTATAATTTTATAATTTTCCATACCCATAATG
1 AAAAACAATGATATTTGAAATAATGAATTAATTTTATAATATTAGAATTTACAATACCCACAATA
*
82331143 TAGGTGA
66 TAGGTAA
** * * *
82331150 AAAAACAATGATATTTGAAATAATGGTTTTATTTTATAATATTAGAATTTACAATATCCACGATA
1 AAAAACAATGATATTTGAAATAATGAATTAATTTTATAATATTAGAATTTACAATACCCACAATA
82331215 TAGGTAA
66 TAGGTAA
82331222 AAAAA
1 AAAAA
82331227 TAAAAATTTA
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.38
Consensus pattern (72 bp):
AAAAACAATGATATTTGAAATAATGAATTAATTTTATAATATTAGAATTTACAATACCCACAATA
TAGGTAA
Found at i:82333117 original size:14 final size:13
Alignment explanation
Indices: 82333085--82333122 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
82333075 TTATAACATG
*
82333085 AATT-TATTTTAT
1 AATTATATTATAT
82333097 AATTATATTATAT
1 AATTATATTATAT
82333110 ATATTATATTATA
1 A-ATTATATTATA
82333123 AAAATAGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 4 0.17
13 8 0.35
14 11 0.48
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
AATTATATTATAT
Found at i:82334166 original size:5 final size:5
Alignment explanation
Indices: 82334156--82334204 Score: 98
Period size: 5 Copynumber: 9.8 Consensus size: 5
82334146 GCGTTTATTG
82334156 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
82334205 TACAATTACC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:82335510 original size:22 final size:21
Alignment explanation
Indices: 82335485--82335535 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
82335475 AGGTTAAATA
*
82335485 ATTATTTTGTTATGGTTTTATT
1 ATTATTTT-ATATGGTTTTATT
*
82335507 ATTATTATTATATGTTTTTATT
1 ATTATT-TTATATGGTTTTATT
*
82335529 TTTATTT
1 ATTATTT
82335536 GGTTTTTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 22 0.88
23 2 0.08
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.71
Consensus pattern (21 bp):
ATTATTTTATATGGTTTTATT
Found at i:82336210 original size:21 final size:22
Alignment explanation
Indices: 82336181--82336221 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
82336171 GAGTTACACG
82336181 GGCTGTCCACACGGGCGTGTCA
1 GGCTGTCCACACGGGCGTGTCA
* *
82336203 GGCT-TCCACATGGGTGTGT
1 GGCTGTCCACACGGGCGTGT
82336222 AGACCCCCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.12, C:0.27, G:0.37, T:0.24
Consensus pattern (22 bp):
GGCTGTCCACACGGGCGTGTCA
Found at i:82336561 original size:14 final size:14
Alignment explanation
Indices: 82336539--82336573 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
82336529 TTGGGTATCC
* *
82336539 GCATGCATACCTCT
1 GCATACATACATCT
82336553 GCATACATACATCT
1 GCATACATACATCT
82336567 GCATACA
1 GCATACA
82336574 AAGCTTTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.26
Consensus pattern (14 bp):
GCATACATACATCT
Found at i:82347870 original size:30 final size:30
Alignment explanation
Indices: 82347835--82347894 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
82347825 TATTTTATTA
82347835 TTAATTTTGTTATTATTTTAAAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGTATTTG
*
82347865 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGTATTTG
82347895 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.15, T:0.60
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGTATTTG
Found at i:82355196 original size:161 final size:161
Alignment explanation
Indices: 82354929--82355243 Score: 531
Period size: 161 Copynumber: 2.0 Consensus size: 161
82354919 TTATCCATAT
* * *
82354929 TTACTTTTAGAGGATATAAAATTTATTACAATGCCTCCATGATTCTGGGGTACCAAATTTGTTAT
1 TTACTTTCAGAGGATATAAAATTCATTACAATGCCTCCATGATTCTAGGGTACCAAATTTGTTAT
* *
82354994 TTCTTATTAACTTACATATAATTTACCTTAGAATTTAACAAACACAAATATGAGTTGCAATGAAA
66 TTCTTATTAACTTACATACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCAATGAAA
*
82355059 ATTTGTGGTTTCTTATTAACTTACTGCTTTG
131 ATTTGTAGTTTCTTATTAACTTACTGCTTTG
* *
82355090 TTACTTTCAGGGGATATAAAATTCATTACAATGCCTCCATGATTTTAGGGTACCAAATTTGTTAT
1 TTACTTTCAGAGGATATAAAATTCATTACAATGCCTCCATGATTCTAGGGTACCAAATTTGTTAT
* * *
82355155 TTTTTATTAACTTACGTACAATTTACCTTAGAATGTAACAAACATAAATATGAGTTGCAATGAAA
66 TTCTTATTAACTTACATACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCAATGAAA
82355220 ATTTGTAGTTTCTTATTAACTTAC
131 ATTTGTAGTTTCTTATTAACTTAC
82355244 GTACAATTTA
Statistics
Matches: 143, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
161 143 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (161 bp):
TTACTTTCAGAGGATATAAAATTCATTACAATGCCTCCATGATTCTAGGGTACCAAATTTGTTAT
TTCTTATTAACTTACATACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCAATGAAA
ATTTGTAGTTTCTTATTAACTTACTGCTTTG
Found at i:82355265 original size:74 final size:74
Alignment explanation
Indices: 82355144--82355306 Score: 222
Period size: 74 Copynumber: 2.2 Consensus size: 74
82355134 TTAGGGTACC
* * *
82355144 AAATTTGTTATTTTTTATTAACTTACGTACAATTTACCTTAGAATGTAACAAACAT-AAATATGA
1 AAATTTGTTATTTCTTATTAACTTACGTACAATTTAACTTAAAATGTAACAAA-ATCAAATATGA
*
82355208 GTTGCAATGA
65 GTTACAATGA
* * *
82355218 AAATTTG-TAGTTTCTTATTAACTTACGTACAATTTAAGTTAAAATGTAACAAAGTCAAATATGG
1 AAATTTGTTA-TTTCTTATTAACTTACGTACAATTTAACTTAAAATGTAACAAAATCAAATATGA
82355282 GTTACAATGA
65 GTTACAATGA
*
82355292 AAATTTATTATTTCT
1 AAATTTGTTATTTCT
82355307 ATGTTGATGT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
73 3 0.04
74 73 0.94
75 2 0.03
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (74 bp):
AAATTTGTTATTTCTTATTAACTTACGTACAATTTAACTTAAAATGTAACAAAATCAAATATGAG
TTACAATGA
Found at i:82359749 original size:2 final size:2
Alignment explanation
Indices: 82359742--82359766 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82359732 TTCTACCTCT
82359742 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
82359767 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:82362204 original size:19 final size:19
Alignment explanation
Indices: 82362167--82362204 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
82362157 TATACAACAC
**
82362167 AATGAATACAACACTAATA
1 AATGAATACAACAAAAATA
82362186 AATGAATACAACAAAAATA
1 AATGAATACAACAAAAATA
82362205 TCTAGAGCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.13, G:0.05, T:0.18
Consensus pattern (19 bp):
AATGAATACAACAAAAATA
Found at i:82370047 original size:41 final size:41
Alignment explanation
Indices: 82370002--82370083 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
82369992 GATCTGATAT
*
82370002 TTTACATTTTATTTATTGGTACTTTATTGCAATATAAAAAA
1 TTTACATTTTATTTATTGGTACTTTATTACAATATAAAAAA
82370043 TTTACATTTTATTTATTGGTACTTTATTACAATATAAAAAA
1 TTTACATTTTATTTATTGGTACTTTATTACAATATAAAAAA
82370084 ATACTTCCCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.49
Consensus pattern (41 bp):
TTTACATTTTATTTATTGGTACTTTATTACAATATAAAAAA
Found at i:82375795 original size:26 final size:26
Alignment explanation
Indices: 82375766--82375873 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82375756 TGGTACAAAT
82375766 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82375792 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82375818 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82375844 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82375870 TGAT
1 TGAT
82375874 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82382038 original size:55 final size:53
Alignment explanation
Indices: 82381930--82382184 Score: 204
Period size: 55 Copynumber: 4.8 Consensus size: 53
82381920 ATTAGGGTTT
* * **
82381930 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAATACATGGC-ATTGGTAA-GT-TCATAAGGC
* * * *
82381985 AAGGAAATCATGTAAGACCATGTCAATACACGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAATACATGGCATTGGTAAGTT-C-ATAAGGC
* * * * *
82382040 AAAGG-TCCCATGTAAGACCATG-CCATGGCATGGCATTGGTGACTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAT-ACATGGCATTGGTAAGTTCATAAGGC
* *
82382093 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAATACATGGCATTGGTAAGTTCAT-AAGGC
* * *
82382142 AAGGATACCACGTAAGACCATGACAAGT-CATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAA-TACATGGCATTGGTAAG
82382185 GTACCCGCGT
Statistics
Matches: 164, Mismatches: 27, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
49 39 0.24
51 1 0.01
52 7 0.04
53 40 0.24
54 13 0.08
55 60 0.37
56 4 0.02
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAATACATGGCATTGGTAAGTTCATAAGGC
Found at i:82382115 original size:108 final size:110
Alignment explanation
Indices: 82381940--82382137 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
82381930 AAGGATACCG
* *
82381940 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGCTCTCTAAGGCAAGGAAACCATGTAAGACCA
* *
82382005 TGTCAATACACGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACACGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * *
82382050 TGTAAGACCATGCCATGGCATGGC-ATTGGTGA-CT-TCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGCTCTC-TAAGGCAAGGAAACCATGTAAGACC
* *
82382112 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACACGGCAATGATAAGTT
82382138 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 2 0.03
108 46 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGCTCTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACACGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:82382397 original size:16 final size:16
Alignment explanation
Indices: 82382376--82382406 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82382366 ATAAATTTGA
82382376 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
82382392 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
82382407 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:82382510 original size:37 final size:37
Alignment explanation
Indices: 82382460--82382533 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
82382450 CATTAAGTAG
82382460 TATCATGCCAAGTAGTAAGATAATTCTTATGAATGTT
1 TATCATGCCAAGTAGTAAGATAATTCTTATGAATGTT
82382497 TATCATGCCAAGTAGTAAGATAATTCTTATGAATGTT
1 TATCATGCCAAGTAGTAAGATAATTCTTATGAATGTT
82382534 GTTATTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (37 bp):
TATCATGCCAAGTAGTAAGATAATTCTTATGAATGTT
Found at i:82393178 original size:55 final size:54
Alignment explanation
Indices: 82393091--82393347 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
82393081 ATTAGGGTTT
* * *
82393091 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAAGGTCTCTAAGGA
* * * * * * *
82393146 AAGGAAAGCATGTAAGACCATGTCAATACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGT-CTCTAAGG-A
* * * *
82393202 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA-GT-TCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTC-TAAGGA
* * *
82393254 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAA-GT-T-TCA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTCTAAGGA
* * * *
82393303 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGT
82393348 ACCCGAGTAT
Statistics
Matches: 166, Mismatches: 31, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
49 39 0.23
50 2 0.01
51 2 0.01
52 5 0.03
53 40 0.24
54 10 0.06
55 64 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTCTAAGGA
Found at i:82393297 original size:108 final size:110
Alignment explanation
Indices: 82393101--82393298 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
82393091 AAGGATACCG
* *
82393101 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGTAAGGAAAGCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGACCA
* *
82393166 TGTCAATACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* *
82393211 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GT-TCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTC-TAAGGCAAGGAAACCATGTAAGACC
*
82393273 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
82393299 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 2 0.03
108 47 0.59
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:82427493 original size:6 final size:6
Alignment explanation
Indices: 82427482--82427508 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
82427472 TTAGCCTCTG
82427482 TTTCTT TTTCTT TTTCTT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTT
82427509 TAATTAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:82429878 original size:19 final size:20
Alignment explanation
Indices: 82429856--82429897 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
82429846 TTTTATAATT
82429856 TTAAATAATTTTCGGT-AAA
1 TTAAATAATTTTCGGTCAAA
* *
82429875 TTAAATATTTTTTGGTCAAA
1 TTAAATAATTTTCGGTCAAA
82429895 TTA
1 TTA
82429898 GAATTGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (20 bp):
TTAAATAATTTTCGGTCAAA
Found at i:82435666 original size:55 final size:55
Alignment explanation
Indices: 82435562--82435676 Score: 122
Period size: 55 Copynumber: 2.1 Consensus size: 55
82435552 CAAAGTTGTA
* * * * *
82435562 CACGGGTAGGCCACACGGGCGTGCACCACGGCCGTGTTAAAAAGGCAGTGTCGTC
1 CACGGGCAGGCAACACGGGCGTGCACCACGGCCATGTTAAAAAGCCAGTGTCGCC
* ** * * * *
82435617 CACGGGCAGGCAACACGGGTGTGTGCCATGGCCATGTTGATAAGCCAGTGTTGCC
1 CACGGGCAGGCAACACGGGCGTGCACCACGGCCATGTTAAAAAGCCAGTGTCGCC
82435672 CACGG
1 CACGG
82435677 CTGAAGGGCA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.21, C:0.28, G:0.35, T:0.17
Consensus pattern (55 bp):
CACGGGCAGGCAACACGGGCGTGCACCACGGCCATGTTAAAAAGCCAGTGTCGCC
Found at i:82436165 original size:17 final size:17
Alignment explanation
Indices: 82436131--82436173 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
82436121 CCTCCTCCTT
* *
82436131 TTCTTTTTTACTTTTTC
1 TTCTTCTTTACTTCTTC
*
82436148 TTCTTCTTTGCTTCTTC
1 TTCTTCTTTACTTCTTC
*
82436165 TTTTTCTTT
1 TTCTTCTTT
82436174 TATTGCCTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (17 bp):
TTCTTCTTTACTTCTTC
Found at i:82438135 original size:181 final size:181
Alignment explanation
Indices: 82437831--82438373 Score: 1032
Period size: 181 Copynumber: 3.0 Consensus size: 181
82437821 GTATAAGGTT
*
82437831 TTGGAAAATGTTGATTCCTTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
1 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
82437896 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
66 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
*
82437961 TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTGTTGTTCCAAGCA
131 TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTATTGTTCCAAGCA
82438012 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
1 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
82438077 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
66 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
*
82438142 TCAAAAGAGGAACCAAGGGAAAATTCTTTGACCTAATTATTGTTCCAAGCA
131 TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTATTGTTCCAAGCA
82438193 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
1 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
*
82438258 CCAGAGAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
66 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
* *
82438323 TCAAAAGAGGAACCAAGGGAAAAGTCTTTAACCTAATTATTGTTCCAAGCA
131 TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTATTGTTCCAAGCA
82438374 ATCACTTGCA
Statistics
Matches: 356, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
181 356 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (181 bp):
TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTATTGTTCCAAGCA
Found at i:82441088 original size:40 final size:40
Alignment explanation
Indices: 82441039--82441285 Score: 286
Period size: 40 Copynumber: 6.2 Consensus size: 40
82441029 TCTTCGGAAT
* * *
82441039 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** * *
82441078 TTAACCCGGATTTGGTAACTTGCACAAATACCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
82441118 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
82441158 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* *
82441198 TTAGCCCGGATATAACAACTCGCACGAATGCCTT-GGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
82441237 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
82441277 TTAGCCCGG
1 TTAGCCCGG
82441286 GTATCATTCA
Statistics
Matches: 173, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
39 37 0.21
40 135 0.78
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:82441274 original size:79 final size:80
Alignment explanation
Indices: 82441030--82441285 Score: 356
Period size: 80 Copynumber: 3.2 Consensus size: 80
82441020 AAACCGAGTT
* * * ** * * **
82441030 CTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
* * * *
82441093 TAACTTGCACAAATAC
65 TCACTAGCATAAATGC
*
82441109 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
82441174 CACTAGCATAAATGC
66 CACTAGCATAAATGC
82441189 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTT-GGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
82441253 CACTAGCATAAATGC
66 CACTAGCATAAATGC
82441268 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
82441286 GTATCATTCA
Statistics
Matches: 160, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
79 64 0.40
80 94 0.59
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
CACTAGCATAAATGC
Found at i:82449182 original size:40 final size:40
Alignment explanation
Indices: 82449134--82449380 Score: 268
Period size: 40 Copynumber: 6.2 Consensus size: 40
82449124 CTCTTCGAAT
* * *
82449134 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** * *
82449173 TTAACCCGGATTTGGTAACTTGCACAAATACCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
82449213 TTAGCCC-GATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
82449252 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * * *
82449292 TTAGCCCGGGTATAACAACTCGCACGAATGCCTTTGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
82449332 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
82449372 TTAGCCCGG
1 TTAGCCCGG
82449381 GTATCATTCA
Statistics
Matches: 169, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
39 36 0.21
40 131 0.78
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:82449286 original size:79 final size:79
Alignment explanation
Indices: 82449134--82449379 Score: 332
Period size: 80 Copynumber: 3.1 Consensus size: 79
82449124 CTCTTCGAAT
* * ** * * ** * * *
82449134 TTAGCCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
* *
82449198 AAATACCTTCGGGTC
65 AAATGCCTTCGGGAC
82449213 TTAGCCCGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATA
1 TTAGCCCGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATA
82449278 AATGCCTTCGGGAC
66 AATGCCTTCGGGAC
* *
82449292 TTAGCCCGGGTATAACAACTCGCACGAATGCCTTTGGGTCTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCC-GATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
82449357 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGAC
82449372 TTAGCCCG
1 TTAGCCCG
82449380 GGTATCATTC
Statistics
Matches: 150, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
79 71 0.47
80 79 0.53
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
TTAGCCCGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATA
AATGCCTTCGGGAC
Found at i:82449333 original size:80 final size:80
Alignment explanation
Indices: 82449161--82449384 Score: 342
Period size: 80 Copynumber: 2.8 Consensus size: 80
82449151 CAAGCACAAT
* * ** * * * * * *
82449161 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATACCTTCGGGTCTTAGCCC-GATAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
82449225 AACAACTCGCACGAA
66 AACAACTCGCACGAA
82449240 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
82449305 AACAACTCGCACGAA
66 AACAACTCGCACGAA
*
82449320 TGCCTTTGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
82449385 CATTCAAATG
Statistics
Matches: 133, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 50 0.38
80 83 0.62
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
AACAACTCGCACGAA
Found at i:82451459 original size:8 final size:8
Alignment explanation
Indices: 82451448--82451499 Score: 81
Period size: 8 Copynumber: 6.8 Consensus size: 8
82451438 ATATATTAAT
82451448 TTATATTA
1 TTATATTA
82451456 TTATATTA
1 TTATATTA
82451464 TTATATTA
1 TTATATTA
*
82451472 TTACATTA
1 TTATATTA
82451480 -TATA-TA
1 TTATATTA
82451486 TTATATTA
1 TTATATTA
82451494 TTATAT
1 TTATAT
82451500 ATATAAGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 2 0.05
7 7 0.17
8 31 0.77
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (8 bp):
TTATATTA
Found at i:82452598 original size:58 final size:58
Alignment explanation
Indices: 82452502--82452619 Score: 173
Period size: 58 Copynumber: 2.0 Consensus size: 58
82452492 AAATTTAGTG
* * *
82452502 ATTGGTAGCAATTCCGCATAAGTTGTGGGCTACCGTAGCTTTGTGTAAGCATTGATGT
1 ATTGGTAGCAATTCCGCATAAGTTGTGGACTACCGTAGCTCTGTGTAAGCATTGAAGT
* ** *
82452560 ATTGGTAGTAATTCCGCATAAGTTGTGGACTATTGTAGCTCTGTGTGAGCATTGAAGT
1 ATTGGTAGCAATTCCGCATAAGTTGTGGACTACCGTAGCTCTGTGTAAGCATTGAAGT
82452618 AT
1 AT
82452620 ATGATTTACC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.36
Consensus pattern (58 bp):
ATTGGTAGCAATTCCGCATAAGTTGTGGACTACCGTAGCTCTGTGTAAGCATTGAAGT
Found at i:82455130 original size:25 final size:23
Alignment explanation
Indices: 82455090--82455137 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
82455080 TGCATTATGG
82455090 AAGGAAAATAAAGAAATGAAAAAAA
1 AAGGAAAATAAAGAAA--AAAAAAA
* *
82455115 AAGGAAAATGATGAAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAA
82455138 GAGTGTGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (23 bp):
AAGGAAAATAAAGAAAAAAAAAA
Found at i:82456464 original size:30 final size:28
Alignment explanation
Indices: 82456424--82456524 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
82456414 GACAAGATTG
* * *
82456424 GCACTGAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
82456454 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
82456482 GCACTAAGTGTGCGAGCTGAATATATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
82456511 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82456525 GATTCACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 25 0.40
29 20 0.32
30 17 0.27
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:82456488 original size:28 final size:29
Alignment explanation
Indices: 82456453--82456524 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
82456443 AAAATTGTAC
*
82456453 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
82456481 AGCACTAAGTGTGCGAGCTGAATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATAT
82456510 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82456525 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:82470090 original size:28 final size:29
Alignment explanation
Indices: 82469943--82470101 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
82469933 ACTCGATTTC
* * **
82469943 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
82469972 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
82470000 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
82470030 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82470059 GCACACTTAGTGCCATATA-TTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82470087 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
82470102 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
28 26 0.24
29 83 0.75
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:82471424 original size:17 final size:17
Alignment explanation
Indices: 82471385--82471417 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
82471375 CATCCACACT
82471385 CTTTTTTTTTCATTTTC
1 CTTTTTTTTTCATTTTC
82471402 CTTTTTTTTTCATTTT
1 CTTTTTTTTTCATTTT
82471418 TTATTTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTTTTTTTCATTTTC
Found at i:82478112 original size:29 final size:29
Alignment explanation
Indices: 82478022--82478181 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
82478012 ACTCGATTTC
* * **
82478022 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
82478051 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
82478079 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
82478109 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82478138 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82478167 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
82478182 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:82480121 original size:40 final size:40
Alignment explanation
Indices: 82480064--82480226 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
82480054 CGGATGGCAA
82480064 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-T
* *
82480104 CTGGGCTAAATCCCGAAGGCATTTGTG-TGAG-GTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTG-ACTATAT
* *
82480144 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* *
82480184 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
82480224 CCG
1 CCG
82480227 ACTAAATCCC
Statistics
Matches: 111, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
39 2 0.02
40 108 0.97
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:82480198 original size:80 final size:80
Alignment explanation
Indices: 82480064--82480226 Score: 247
Period size: 80 Copynumber: 2.0 Consensus size: 80
82480054 CGGATGGCAA
* *
82480064 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAATCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAATCCCGAAGGCATTTG
**
82480129 TGTGAGGTACTATAT
66 TGCAAGGTACTATAT
* *
82480144 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAATCCCGAAGGCATTT
*
82480208 GTGCAAGTTACTATAT
65 GTGCAAGGTACTATAT
82480224 CCG
1 CCG
82480227 ACTAAATCCC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
79 2 0.03
80 73 0.97
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAATCCCGAAGGCATTTG
TGCAAGGTACTATAT
Found at i:82488341 original size:40 final size:40
Alignment explanation
Indices: 82488286--82488503 Score: 323
Period size: 40 Copynumber: 5.5 Consensus size: 40
82488276 CGGATGGCAA
* * *
82488286 CCGGGCTAAGTCCCGAAGGCATTTGGGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
82488326 CCGGGCTAAATCCCGAAGGCATTTATGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
82488366 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
82488406 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82488446 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
82488486 -CTGACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82488504 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.09
40 150 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82501777 original size:46 final size:46
Alignment explanation
Indices: 82501725--82501846 Score: 172
Period size: 46 Copynumber: 2.7 Consensus size: 46
82501715 CGCCCCTAAG
* * * * *
82501725 TGAACTCAGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* * *
82501771 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATTCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
82501817 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
82501847 TGCTCAACCC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:82502303 original size:30 final size:30
Alignment explanation
Indices: 82502269--82502328 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
82502259 ATTTAATACG
82502269 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
82502299 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
82502329 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:82504418 original size:29 final size:29
Alignment explanation
Indices: 82504357--82504455 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
82504347 ACAGTAAGTC
*
82504357 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
82504385 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
82504414 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
82504442 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82504456 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 34 0.50
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:82512150 original size:29 final size:29
Alignment explanation
Indices: 82512087--82512185 Score: 141
Period size: 28 Copynumber: 3.5 Consensus size: 29
82512077 ACAGTAAGTC
* *
82512087 CGCACACTTAGTGCT-TA-ATACTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
82512115 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
82512144 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
*
82512172 CGCACATTTAGTGC
1 CGCACACTTAGTGC
82512186 CAATCTCATT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
28 33 0.50
29 32 0.48
30 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:82516378 original size:30 final size:30
Alignment explanation
Indices: 82516311--82516380 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
82516301 AAAAAGGTAT
*
82516311 AAAATGTAGGGTAGAAATGTGAAATAGAGG
1 AAAATGTGGGGTAGAAATGTGAAATAGAGG
*
82516341 AAAATGTGGGGTAGAAATGTGAAATGGAGG
1 AAAATGTGGGGTAGAAATGTGAAATAGAGG
82516371 AAAATGTGGG
1 AAAATGTGGG
82516381 CTAGTATGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.43, C:0.00, G:0.37, T:0.20
Consensus pattern (30 bp):
AAAATGTGGGGTAGAAATGTGAAATAGAGG
Found at i:82519446 original size:40 final size:39
Alignment explanation
Indices: 82519286--82519448 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
82519276 TGTGTATGAA
*
82519286 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
82519325 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
82519364 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
82519403 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
82519443 TGTGCG
1 TGTGCG
82519449 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:82519464 original size:40 final size:39
Alignment explanation
Indices: 82519286--82519479 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
82519276 TGTGTATGAA
* *
82519286 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
82519325 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
82519364 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
82519403 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
82519443 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
82519480 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:82526223 original size:29 final size:29
Alignment explanation
Indices: 82526191--82526322 Score: 138
Period size: 29 Copynumber: 4.6 Consensus size: 29
82526181 AATTTAAGCC
*** * *
82526191 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACATAGTGCCATATATTTCCAGCA
** * * *
82526220 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCA
* *
82526249 TGCACACATAGTGTCATATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCA
*
82526278 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCA
*
82526307 CGCACACTTAGTGCCA
1 CGCACACATAGTGCCA
82526323 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 86 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACATAGTGCCATATATTTCCAGCA
Found at i:82534157 original size:40 final size:40
Alignment explanation
Indices: 82534102--82534311 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82534092 AACATTGGAA
82534102 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
82534142 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
82534182 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
82534222 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
82534261 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
82534302 CTATATCCGG
1 ATATATCCGG
82534312 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:82542293 original size:40 final size:40
Alignment explanation
Indices: 82542238--82542447 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82542228 AACATTGGAA
82542238 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
82542278 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
82542318 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
82542358 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
82542397 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
82542438 CTATATCCGG
1 ATATATCCGG
82542448 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:82550320 original size:29 final size:29
Alignment explanation
Indices: 82550288--82550379 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
82550278 TCGCACAACC
* * ** *
82550288 AGTGCTGTATTTTTCCAGCTTGCACACAT
1 AGTGCTATATATTTCCAGCACGCACACTT
82550317 AGTG-TCATATATTTCCAGCACGCACACTT
1 AGTGCT-ATATATTTCCAGCACGCACACTT
*
82550346 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCTATATATTTCCAGCACGCACACTT
82550375 AGTGC
1 AGTGC
82550380 CAATCTCGTC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
28 1 0.02
29 54 0.98
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (29 bp):
AGTGCTATATATTTCCAGCACGCACACTT
Found at i:82550380 original size:29 final size:29
Alignment explanation
Indices: 82550299--82550381 Score: 130
Period size: 29 Copynumber: 2.9 Consensus size: 29
82550289 GTGCTGTATT
** * *
82550299 TTTCCAGCTTGCACACATAGTGTCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
82550328 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
82550357 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCACGCACACTTAGTGCCA
82550382 ATCTCGTCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:82554516 original size:40 final size:39
Alignment explanation
Indices: 82554356--82554518 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
82554346 TGTGTATGAA
* *
82554356 TGTGCGAATTGTGATATCCAGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
82554395 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
82554434 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
82554473 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
82554513 TGTGCG
1 TGTGCG
82554519 GGTTACCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 96 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:82554534 original size:40 final size:39
Alignment explanation
Indices: 82554356--82554549 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
82554346 TGTGTATGAA
* * *
82554356 TGTGCGAATTGTGATATCCAGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
82554395 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
82554434 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
82554473 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
82554513 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
82554550 GTTTGAACGA
Statistics
Matches: 137, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 96 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:82556757 original size:23 final size:23
Alignment explanation
Indices: 82556722--82556770 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
82556712 CGAGTGAGGG
82556722 ACACGAGCGTGTGCTTTACCTCC
1 ACACGAGCGTGTGCTTTACCTCC
** *
82556745 ACACGAGTTTGTGCTTTGCCTCC
1 ACACGAGCGTGTGCTTTACCTCC
82556768 ACA
1 ACA
82556771 TGGGAGTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.18, C:0.33, G:0.20, T:0.29
Consensus pattern (23 bp):
ACACGAGCGTGTGCTTTACCTCC
Found at i:82556780 original size:23 final size:23
Alignment explanation
Indices: 82556722--82556780 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
82556712 CGAGTGAGGG
*
82556722 ACACGAGCGTGTGCTTTACCTCC
1 ACACGAGAGTGTGCTTTACCTCC
** *
82556745 ACACGAGTTTGTGCTTTGCCTCC
1 ACACGAGAGTGTGCTTTACCTCC
* *
82556768 ACATGGGAGTGTG
1 ACACGAGAGTGTG
82556781 AGGCATAACC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (23 bp):
ACACGAGAGTGTGCTTTACCTCC
Found at i:82558008 original size:37 final size:37
Alignment explanation
Indices: 82557958--82558070 Score: 190
Period size: 37 Copynumber: 3.1 Consensus size: 37
82557948 CTTTAGCTCA
* *
82557958 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
82557995 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
82558032 GACATAATCCCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
82558069 GA
1 GA
82558071 ATATATTTCC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.21
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:82558347 original size:22 final size:22
Alignment explanation
Indices: 82558321--82558443 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
82558311 GTTCATATTC
82558321 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
82558343 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
82558367 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
82558390 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
82558414 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82558437 ATCACAT
1 ATCACAT
82558444 ATATGCACAT
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 22 0.29
23 19 0.25
24 19 0.25
25 15 0.20
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82558354 original size:47 final size:47
Alignment explanation
Indices: 82558275--82558468 Score: 307
Period size: 47 Copynumber: 4.1 Consensus size: 47
82558265 TATATATATT
* * * * *
82558275 TCACATTAGTCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
82558322 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82558369 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
82558416 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82558463 TCACAT
1 TCACAT
82558469 AAAATCCTAA
Statistics
Matches: 136, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 136 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:82558465 original size:25 final size:25
Alignment explanation
Indices: 82558390--82558469 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
82558380 ATTCGGCCTT
**
82558390 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
82558415 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
82558437 ATCACATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
82558462 ATCACATA
1 ATCACATA
82558470 AAATCCTAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
22 10 0.24
23 6 0.14
24 6 0.14
25 20 0.48
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.33
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:82563504 original size:43 final size:45
Alignment explanation
Indices: 82563446--82563559 Score: 196
Period size: 43 Copynumber: 2.6 Consensus size: 45
82563436 GAGAACCAGT
82563446 GTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGAGCTA-
1 GTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGAGCTAG
*
82563490 G-AAGACATGTCTGGGACATGCATCGGCTTTGAGACGAGAGCTAG
1 GTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGAGCTAG
82563534 TGTAAGACATGTCTGGGACATGCATC
1 -GTAAGACATGTCTGGGACATGCATC
82563560 AGCCTCGAGA
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
43 41 0.62
44 1 0.02
45 1 0.02
46 23 0.35
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (45 bp):
GTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGAGCTAG
Found at i:82563558 original size:46 final size:46
Alignment explanation
Indices: 82563394--82563559 Score: 212
Period size: 46 Copynumber: 3.7 Consensus size: 46
82563384 TGATATGTGT
* * *** ** *
82563394 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGA
* *
82563440 ACCAGTGTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGA
*
82563486 GCTA--G-AAGACATGTCTGGGACATGCATCGGCTTTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGA
82563529 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
82563560 AGCCTCGAGA
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
43 41 0.39
44 1 0.01
45 1 0.01
46 61 0.59
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTTAAGACGAGA
Found at i:82563838 original size:49 final size:49
Alignment explanation
Indices: 82563610--82563830 Score: 232
Period size: 49 Copynumber: 4.5 Consensus size: 49
82563600 CTTGTTGTGT
* * * * *
82563610 GTCAGTGTAAGACCTGTCTGGGATATGGA-ATCGACAC-CAATAAATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACA-CGACATCGGC-CTCAATATATGAAA
* * * * * *
82563659 G-CTAGTGTAAGACCTATCTAGGACATGGCATCAGCCTCGATATATGAAA
1 GTC-AGTGTAAGACCTGTCTGGGACACGACATCGGCCTCAATATATGAAA
* *
82563708 GTCAGTGTAAGACCTGTCTAGGACACGACATCGGTCTCAATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACACGACATCGGCCTCAATATATGAAA
*
82563757 GTCAGTGTAAGACCTGTCCGGGACACGACATCGGCCTCAATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACACGACATCGGCCTCAATATATGAAA
*** *
82563806 GTCAACATAAGACCTGTTTGGGACA
1 GTCAGTGTAAGACCTGTCTGGGACA
82563831 TGGCATCGAC
Statistics
Matches: 144, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
48 3 0.02
49 140 0.97
50 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACACGACATCGGCCTCAATATATGAAA
Found at i:82569803 original size:39 final size:39
Alignment explanation
Indices: 82569760--82569919 Score: 266
Period size: 39 Copynumber: 4.1 Consensus size: 39
82569750 ATGCAAGATA
* *
82569760 CTGGAAATGTATCAGGGATAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
82569799 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
82569838 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
82569877 CAGGAAATGTATCCGGGCTAAAGTCCCGCAGGGTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
82569916 CTGG
1 CTGG
82569920 TAATATAATT
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:82574043 original size:40 final size:39
Alignment explanation
Indices: 82573987--82574205 Score: 206
Period size: 40 Copynumber: 5.5 Consensus size: 39
82573977 GCTCGATTGT
* * * *
82573987 CTTCGGGACA-TAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGA-ATTAACCCGGTT-TAGTAACTCGCACAAATGC
**
82574027 CTTCGGGAATTGGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCGG-TTTAGTAACTCGCACAAATGC
* *
82574067 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCGG-TTTAGTAACTCGCACAAATGC
* * * *
82574107 CTTCGGGATTTAACCTGATTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCG-GTTTAGTAACTCGCACAAATGC
* * * *
82574147 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAACCCGG-TTTAGTAAC-TCGCACAAATGC
* *
82574188 CTTCGGGACTTAGCCCGG
1 CTTCGGGAATTAACCCGG
82574206 ATACCATTCG
Statistics
Matches: 151, Mismatches: 23, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.81
41 27 0.18
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
CTTCGGGAATTAACCCGGTTTAGTAACTCGCACAAATGC
Found at i:82574085 original size:80 final size:79
Alignment explanation
Indices: 82573987--82574207 Score: 237
Period size: 80 Copynumber: 2.7 Consensus size: 79
82573977 GCTCGATTGT
* * * * *
82573987 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTGGCCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGT
82574052 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * * * * *
82574067 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGATTTA-ACCTGATTTTGG
1 CTTCGGGACTTAACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGAATTAGCCCGGA-TTTAG
82574131 TAACTCGCACAAATGC
64 TAACTCGCACAAATGC
* * * * * *
82574147 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGAATTAGCCCGGAT
82574208 ACCATTCGAA
Statistics
Matches: 115, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 4 0.03
80 82 0.71
81 25 0.22
82 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (79 bp):
CTTCGGGACTTAACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTA
ACTCGCACAAATGC
Found at i:82582138 original size:40 final size:39
Alignment explanation
Indices: 82582094--82582312 Score: 199
Period size: 40 Copynumber: 5.5 Consensus size: 39
82582084 GCTCGATTGT
* * *
82582094 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGTT-TAGTAACTCGCACAAATGC
*
82582134 CTTCGGGA-ATTGGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
82582174 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACAAATGC
** * * *
82582214 CTTCGGGATTTAACCCGATTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCG-GTTTAGTAACTCGCACAAATGC
* * * *
82582254 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
*
82582295 CTTCGGGACTTAGCCCGG
1 CTTCGGGACATAGCCCGG
82582313 ATACCATTCG
Statistics
Matches: 150, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 2 0.01
40 121 0.81
41 25 0.17
42 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:82582192 original size:80 final size:79
Alignment explanation
Indices: 82582094--82582314 Score: 246
Period size: 80 Copynumber: 2.7 Consensus size: 79
82582084 GCTCGATTGT
* * * * *
82582094 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTGGCCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGT
82582159 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * * * *
82582174 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGATTTAACCC-GATTTTGG
1 CTTCGGGACTTAACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGAATTAGCCCGGA-TTTAG
82582238 TAACTCGCACAAATGC
64 TAACTCGCACAAATGC
* * * * * *
82582254 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGAATTAGCCCGGAT
82582315 ACCATTCGAA
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 2 0.02
80 85 0.73
81 28 0.24
82 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (79 bp):
CTTCGGGACTTAACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTA
ACTCGCACAAATGC
Found at i:82587318 original size:2 final size:2
Alignment explanation
Indices: 82587313--82587349 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
82587303 ATACACACAC
* *
82587313 AT AT AT AT AT AT AT AT AG AT AT AT AT AT AA AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82587350 AAGATTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (2 bp):
AT
Found at i:82590969 original size:5 final size:5
Alignment explanation
Indices: 82590959--82590983 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
82590949 CACATTTACA
82590959 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
82590984 CCAAAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:82595567 original size:21 final size:22
Alignment explanation
Indices: 82595541--82595581 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
82595531 CACGAGACAC
*
82595541 AGGGGC-ACACGCTCGTGTGGA
1 AGGGGCAACACGCCCGTGTGGA
82595562 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
82595582 ACCAATTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.27, G:0.41, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGA
Found at i:82596875 original size:50 final size:47
Alignment explanation
Indices: 82596754--82596923 Score: 179
Period size: 47 Copynumber: 3.6 Consensus size: 47
82596744 TATAATGCCA
* *
82596754 ATGCCATGTCCCAGACATGGTCTTACACAGGCTCATCCATCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAGTCG
*
82596801 ATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACAT-ATCCGTGCAG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCATC-CATCA--AGT-C-G
* ** ** *
82596851 ATGCCATGTCCCAGACATGGTCTTACACTGACACAT-TTTGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAGTCG
82596897 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
82596924 AGCTCTCAGC
Statistics
Matches: 107, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
44 10 0.09
45 14 0.13
46 7 0.07
47 36 0.34
48 3 0.03
49 2 0.02
50 34 0.32
51 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAGTCG
Found at i:82600056 original size:16 final size:16
Alignment explanation
Indices: 82600035--82600069 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
82600025 CCTTTCGACT
* *
82600035 TTTCGGCTTTTTGGTA
1 TTTCGGCATTTTGGCA
82600051 TTTCGGCATTTTGGCA
1 TTTCGGCATTTTGGCA
82600067 TTT
1 TTT
82600070 ACCGACCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.14, G:0.23, T:0.54
Consensus pattern (16 bp):
TTTCGGCATTTTGGCA
Found at i:82600881 original size:24 final size:24
Alignment explanation
Indices: 82600853--82600919 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
82600843 CTCCTTAAAT
* *
82600853 CTCTCCATAAATCACTCCTTGATT
1 CTCTCCATAAATCACTCCATGATA
* *
82600877 TTCTCC-TAATATCTCTCCATGATA
1 CTCTCCATAA-ATCACTCCATGATA
*
82600901 CACTCCATAAATCACTCCA
1 CTCTCCATAAATCACTCCA
82600920 ACCTCCCATT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
23 3 0.09
24 28 0.82
25 3 0.09
ACGTcount: A:0.28, C:0.34, G:0.03, T:0.34
Consensus pattern (24 bp):
CTCTCCATAAATCACTCCATGATA
Found at i:82608032 original size:6 final size:6
Alignment explanation
Indices: 82608010--82608077 Score: 84
Period size: 6 Copynumber: 11.3 Consensus size: 6
82608000 TTCAAAATAG
* *
82608010 AAAAAT AAAACT CAAAAT AAAAAT -AAAAT AAAAGAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAAAAT
* *
82608058 AAACAT AAACAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AA
82608078 TCGGACTCAA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
5 5 0.09
6 43 0.80
7 6 0.11
ACGTcount: A:0.76, C:0.06, G:0.01, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:82620619 original size:17 final size:16
Alignment explanation
Indices: 82620596--82620636 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
82620586 ATGACTAAAT
82620596 AAATAATAAGA-AAACA
1 AAATAATAAGAGAAA-A
82620612 ATAATAATAAGAGAAAA
1 A-AATAATAAGAGAAAA
82620629 AAATAATA
1 AAATAATA
82620637 GACTAAGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 12 0.52
18 3 0.13
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.17
Consensus pattern (16 bp):
AAATAATAAGAGAAAA
Found at i:82620645 original size:21 final size:19
Alignment explanation
Indices: 82620592--82620636 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
82620582 AATAATGACT
82620592 AAATAAATAAT-A-AGAAAA
1 AAAT-AATAATAAGAGAAAA
*
82620610 CAATAATAATAAGAGAAAA
1 AAATAATAATAAGAGAAAA
82620629 AAATAATA
1 AAATAATA
82620637 GACTAAGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.26
18 4 0.17
19 13 0.57
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.18
Consensus pattern (19 bp):
AAATAATAATAAGAGAAAA
Found at i:82625571 original size:189 final size:189
Alignment explanation
Indices: 82625251--82625630 Score: 742
Period size: 189 Copynumber: 2.0 Consensus size: 189
82625241 AAAACAATAT
82625251 TACAAAAATAACACAATCTAGCTTTATTTAACTGACATATAACCAATTTTAATATCTTATAACAG
1 TACAAAAATAACACAATCTAGCTTTATTTAACTGACATATAACCAATTTTAATATCTTATAACAG
*
82625316 AATTGCTAATCACACAATAAGTTTTCAATATAGAAACTGAATATTTGAAACATACTATTTAAATA
66 AATTGCTAATCACACAATAAGTTTTCAATATAGAAAATGAATATTTGAAACATACTATTTAAATA
*
82625381 TGCTACACTCTGTAACAATGTTGTCTTTCTTTAATACTATACACGCATAAAACTTTTCA
131 TGCTACACTCTGTAACAATGTTGTCTTTCTTTAATACTATACACACATAAAACTTTTCA
82625440 TACAAAAATAACACAATCTAGCTTTATTTAACTGACATATAACCAATTTTAATATCTTATAACAG
1 TACAAAAATAACACAATCTAGCTTTATTTAACTGACATATAACCAATTTTAATATCTTATAACAG
82625505 AATTGCTAATCACACAATAAGTTTTCAATATAGAAAATGAATATTTGAAACATACTATTTAAATA
66 AATTGCTAATCACACAATAAGTTTTCAATATAGAAAATGAATATTTGAAACATACTATTTAAATA
82625570 TGCTACACTCTGTAACAATGTTGTCTTTCTTTAATACTATACACACATAAAACTTTTCA
131 TGCTACACTCTGTAACAATGTTGTCTTTCTTTAATACTATACACACATAAAACTTTTCA
82625629 TA
1 TA
82625631 GTATCTAATC
Statistics
Matches: 189, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 189 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (189 bp):
TACAAAAATAACACAATCTAGCTTTATTTAACTGACATATAACCAATTTTAATATCTTATAACAG
AATTGCTAATCACACAATAAGTTTTCAATATAGAAAATGAATATTTGAAACATACTATTTAAATA
TGCTACACTCTGTAACAATGTTGTCTTTCTTTAATACTATACACACATAAAACTTTTCA
Found at i:82637044 original size:45 final size:45
Alignment explanation
Indices: 82636989--82637203 Score: 175
Period size: 46 Copynumber: 4.6 Consensus size: 45
82636979 GTATAATGCT
* * *
82636989 GATGCCATGTCCCAGACATGGTCTTACATTAAC-ACATTTTGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAACTACATCTCG-AGGCC
**
82637035 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAAC-TACATCTCGAGGCC
* * * *
82637081 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAACT-ACATCTCGAGGCC
* * * ** * * *
82637127 AATGCCATGTTCCAGACATGGTCTTACAATGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAACT-ACAT-CTCGAGGCC
82637175 GATGCATGTCCCAGACATGTCTTACACTA
1 GATGCATGTCCCAGACATGTCTTACACTA
82637204 GCACACAAAT
Statistics
Matches: 141, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 65 0.46
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAACTACATCTCGAGGCC
Found at i:82637092 original size:46 final size:46
Alignment explanation
Indices: 82637032--82637202 Score: 220
Period size: 46 Copynumber: 3.7 Consensus size: 46
82637022 ACATTTTGTA
82637032 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAG
* * *
82637078 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
* * * * *
82637124 GCCAATGCCATGTTCCAGACATGGTCTTACAATGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAG
82637172 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
82637203 AGCACACAAA
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
46 56 0.52
47 27 0.25
48 23 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
Found at i:82645206 original size:30 final size:30
Alignment explanation
Indices: 82645148--82645208 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82645138 TTCCCGAGCC
*
82645148 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTATAAATATGCAAAAGTT
* * * *
82645178 TAGGGGCAAAATTATAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTATAAATATGCAAAAGTT
82645208 T
1 T
82645209 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTATAAATATGCAAAAGTT
Found at i:82653225 original size:50 final size:50
Alignment explanation
Indices: 82653118--82653296 Score: 243
Period size: 50 Copynumber: 3.5 Consensus size: 50
82653108 GATTTTCGTA
* * *
82653118 TAAGACCATAGCTGGACTATGGCATCGGTGTGATGTGATTATATGCTTCTATG
1 TAAGACCATAGCTGGGCTATGGCATC-G-GT-ATGTGATTATATGATTCTGTG
*
82653171 TAAGACCATAGCTGGGCTATGGCATCGGTATGTGATTATATGATTCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGGTATGTGATTATATGATTCTGTG
* * * * *
82653221 TAAGACCATAGCTGGGCTATGACATCAGTATGAGA-TATGTGATTATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGGTATGTGATTATATGATTCTGTG
82653270 TAAGACCATAGCTGGGCTATGGCATCG
1 TAAGACCATAGCTGGGCTATGGCATCG
82653297 AGGAAACGAA
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
49 36 0.32
50 50 0.44
51 2 0.02
52 1 0.01
53 25 0.22
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
TAAGACCATAGCTGGGCTATGGCATCGGTATGTGATTATATGATTCTGTG
Found at i:82664185 original size:13 final size:13
Alignment explanation
Indices: 82664167--82664191 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82664157 CCTGGCATAC
82664167 GCCCGTGTCCCTA
1 GCCCGTGTCCCTA
82664180 GCCCGTGTCCCT
1 GCCCGTGTCCCT
82664192 CACACAGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTA
Found at i:82665279 original size:46 final size:46
Alignment explanation
Indices: 82665175--82665396 Score: 193
Period size: 46 Copynumber: 4.8 Consensus size: 46
82665165 GGGGTAGGAT
* * * *
82665175 GCCGATGCCATGTCCCGGACATGGTCTTACAGTAG--CTCAACTCTTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTC-AAG
* * * *
82665221 GTCGATGCATGTCCTAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAG
* * *
82665267 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAG
* * * **
82665313 GCCGATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCGTAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCAAG
*
82665361 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
82665397 ACAATAACCC
Statistics
Matches: 146, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 68 0.47
47 28 0.19
48 25 0.17
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAG
Found at i:82670224 original size:42 final size:41
Alignment explanation
Indices: 82670177--82670287 Score: 150
Period size: 42 Copynumber: 2.7 Consensus size: 41
82670167 ATAACTCGAT
* *
82670177 TGCTCCTTCCCCGCACATGGGTATGCACCATTCTGTTGGGCC
1 TGCTCCTTCTCCACACATGGGTATGCACCATTCTGTTGGG-C
* * **
82670219 TGCTCCTTCTCCACACATAGGTCTATACCATTCTGTTGGGC
1 TGCTCCTTCTCCACACATGGGTATGCACCATTCTGTTGGGC
82670260 TAGCTCCTTCTCCACACATGGGTATGCA
1 T-GCTCCTTCTCCACACATGGGTATGCA
82670288 TAATTTTGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 2 0.03
42 56 0.97
ACGTcount: A:0.16, C:0.33, G:0.20, T:0.31
Consensus pattern (41 bp):
TGCTCCTTCTCCACACATGGGTATGCACCATTCTGTTGGGC
Found at i:82670301 original size:42 final size:41
Alignment explanation
Indices: 82670177--82670301 Score: 128
Period size: 42 Copynumber: 3.0 Consensus size: 41
82670167 ATAACTCGAT
* * **
82670177 TGCTCCTTCCCCGCACATGGGTATGCACCATTCTGTTGGGCC
1 TGCTCCTTCTCCACACATGGGTATGCATAATTCTGTTGGG-C
* *
82670219 TGCTCCTTCTCCACACATAGGTCT--ATACCATTCTGTTGGGC
1 TGCTCCTTCTCCACACATGGGTATGCATA--ATTCTGTTGGGC
* *
82670260 TAGCTCCTTCTCCACACATGGGTATGCATAATTTTGCTGGGC
1 T-GCTCCTTCTCCACACATGGGTATGCATAATTCTGTTGGGC
82670302 CGTGTATGCC
Statistics
Matches: 68, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
40 1 0.01
41 2 0.03
42 62 0.91
44 3 0.04
ACGTcount: A:0.16, C:0.31, G:0.21, T:0.32
Consensus pattern (41 bp):
TGCTCCTTCTCCACACATGGGTATGCATAATTCTGTTGGGC
Found at i:82673045 original size:24 final size:24
Alignment explanation
Indices: 82673018--82673132 Score: 212
Period size: 24 Copynumber: 4.8 Consensus size: 24
82673008 CTTATTATGT
**
82673018 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
82673042 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82673066 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82673090 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
82673114 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
82673133 TATTTCCAGC
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:82673157 original size:29 final size:29
Alignment explanation
Indices: 82673115--82673188 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
82673105 CATAGTAAAT
*
82673115 CGCACACATAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82673144 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82673173 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
82673189 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:82680002 original size:48 final size:47
Alignment explanation
Indices: 82679944--82680100 Score: 149
Period size: 46 Copynumber: 3.3 Consensus size: 47
82679934 GCCATGTCCT
* * *
82679944 AGACAAGTCTTACACTAGCTTGTATATCGCGAGGCCGATGCATGCCC
1 AGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATGCCC
* * * ** *
82679991 TAGACATGTCTTACACTAGC-TCT-CATCTCAATACCGACGCATGTCCC
1 -AGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATG-CCC
* * * *
82680038 AGACATGTCTTACACTGGCTTAAATATCTTGAGGCC-ACTGCATGTCC
1 AGACATGTCTTACACTAGCTTATATATCTCGAGGCCGA-TGCATGCCC
82680085 AGACATGTCTTACACT
1 AGACATGTCTTACACT
82680101 GGCTCTCATA
Statistics
Matches: 87, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
46 32 0.37
47 25 0.29
48 30 0.34
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (47 bp):
AGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATGCCC
Found at i:82680048 original size:94 final size:94
Alignment explanation
Indices: 82679931--82680109 Score: 245
Period size: 94 Copynumber: 1.9 Consensus size: 94
82679921 ATCACAAGAT
* **
82679931 GACGCCATGTCCTAGACAAGTCTTACACTAGCTTGTATATCGCGAGGCCGA-TGCATGCCCTAGA
1 GACGCCATGTCCCAGACAAGTCTTACACTAGCTTAAATATCGCGAGGCC-ACTGCATGCCC-AGA
82679995 CATGTCTTACACTAGCTCTCATCTCAATACC
64 CATGTCTTACACTAGCTCTCATCTCAATACC
* * ** *
82680026 GACG-CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTTGAGGCCACTGCATGTCCAGACA
1 GACGCCATGTCCCAGACAAGTCTTACACTAGCTTAAATATCGCGAGGCCACTGCATGCCCAGACA
*
82680090 TGTCTTACACTGGCTCTCAT
66 TGTCTTACACTAGCTCTCAT
82680110 ACTGTGGCTG
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 25 0.34
94 45 0.61
95 4 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (94 bp):
GACGCCATGTCCCAGACAAGTCTTACACTAGCTTAAATATCGCGAGGCCACTGCATGCCCAGACA
TGTCTTACACTAGCTCTCATCTCAATACC
Found at i:82680142 original size:93 final size:93
Alignment explanation
Indices: 82679931--82680149 Score: 230
Period size: 93 Copynumber: 2.3 Consensus size: 93
82679921 ATCACAAGAT
**
82679931 GACGCCATGTCCTAGACA-AGTCTTACACTAGCTTGTATATCGCGAGGCCGATGCATGCCCTAGA
1 GACG-CATGTCCTAGACATA-TCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGCCCTAGA
82679995 CATGTCTTACACTAGCTCTCATCTCAATACC
64 CATGTCTTACACTAGCTCTCATCT-AATACC
* * * ** *
82680026 GACGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTTGAGGCC-ACTGCATGTCC-AGAC
1 GACGCATGTCCTAGACATATCTTACACTAGCTTAAATATCGCGAGGCCGA-TGCATGCCCTAGAC
* * * *
82680089 ATGTCTTACACTGGCTCTCATACT-GTGGCT
65 ATGTCTTACACTAGCTCTCAT-CTAAT-ACC
* *
82680119 GATGCATGTCCTAAACATATCTTACACTAGC
1 GACGCATGTCCTAGACATATCTTACACTAGC
82680150 ACACATATCA
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
92 1 0.01
93 52 0.50
94 46 0.45
95 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (93 bp):
GACGCATGTCCTAGACATATCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGCCCTAGACA
TGTCTTACACTAGCTCTCATCTAATACC
Found at i:82685761 original size:22 final size:22
Alignment explanation
Indices: 82685733--82685777 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
82685723 CTTCATTAAC
*
82685733 ATCATTAACTTACTCTGAATTT
1 ATCATTAACTTACTCTAAATTT
82685755 ATCATTAACTTACTCTAAATTT
1 ATCATTAACTTACTCTAAATTT
82685777 A
1 A
82685778 CACTTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (22 bp):
ATCATTAACTTACTCTAAATTT
Done.