Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 266 of 438
Found at i:82695284 original size:41 final size:41
Alignment explanation
Indices: 82695173--82695491 Score: 392
Period size: 41 Copynumber: 7.8 Consensus size: 41
82695163 GCGTTTTGCC
* *
82695173 AAAAGCGCCGCTAATGCTCAAATCTATAGCGGCGCTTTATG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTATG
* * * * *
82695214 AAAAATGCCGCT-GTGCTCACATCTATAGCGGCGATTTACG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTATG
* * *
82695254 AAAAACACCGCTAATGCTCAGATATATAGCGGCGCTTTAAG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTATG
* *
82695295 CAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTTTG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTATG
* *
82695336 AAAAACGCCGCTAATGCTCAGATATATAGCGGTGC-TTATTG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTA-TG
* * *
82695377 AAAAACGCCGCTAATGCTCAGATCTATATCGGTGCTTTTTG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTATG
* * *
82695418 AAAAATGCTGCTAATGCTCAGATCTATAGCGGCGCTTTTTG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTATG
* * * *
82695459 AAAAACACCGCTATTGCTC-TATTTATAGCGGCG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCG
82695492 TTTTTTCAAA
Statistics
Matches: 240, Mismatches: 35, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
40 48 0.20
41 190 0.79
42 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (41 bp):
AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTTATG
Found at i:82695805 original size:7 final size:7
Alignment explanation
Indices: 82695784--82695837 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
82695774 TTACTTATCA
*
82695784 TTATAGT
1 TTATGGT
*
82695791 TTAAGGT
1 TTATGGT
82695798 TTATGGT
1 TTATGGT
*
82695805 TTAGGGT
1 TTATGGT
* *
82695812 ATATAGT
1 TTATGGT
*
82695819 TTAGGGT
1 TTATGGT
82695826 TTATGGT
1 TTATGGT
82695833 TTATG
1 TTATG
82695838 ATGAGTTAAT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:82695806 original size:14 final size:14
Alignment explanation
Indices: 82695784--82695835 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
82695774 TTACTTATCA
*
82695784 TTATAGTTTAAGGT
1 TTATAGTTTAGGGT
*
82695798 TTATGGTTTAGGGT
1 TTATAGTTTAGGGT
*
82695812 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
82695826 TTATGGTTTA
1 TTATAGTTTA
82695836 TGATGAGTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:82695936 original size:7 final size:7
Alignment explanation
Indices: 82695924--82695957 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
82695914 ATCTCAAGGT
82695924 TTATGGA
1 TTATGGA
82695931 TTATGGA
1 TTATGGA
82695938 TTATGGA
1 TTATGGA
*
82695945 CTTAGGGA
1 -TTATGGA
82695953 TTATG
1 TTATG
82695958 ATTTATGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.41
Consensus pattern (7 bp):
TTATGGA
Found at i:82695955 original size:15 final size:14
Alignment explanation
Indices: 82695924--82695957 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
82695914 ATCTCAAGGT
*
82695924 TTATGGATTATGGA
1 TTATGGATTAGGGA
82695938 TTATGGACTTAGGGA
1 TTATGGA-TTAGGGA
82695953 TTATG
1 TTATG
82695958 ATTTATGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.41
Consensus pattern (14 bp):
TTATGGATTAGGGA
Found at i:82695998 original size:15 final size:15
Alignment explanation
Indices: 82695978--82696013 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
82695968 CAAGGGTTGA
82695978 GGTTTAGAGATTTAG
1 GGTTTAGAGATTTAG
82695993 GGTTTAGAGATTTAG
1 GGTTTAGAGATTTAG
82696008 GGTTTA
1 GGTTTA
82696014 AAGGTTAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (15 bp):
GGTTTAGAGATTTAG
Found at i:82696013 original size:7 final size:7
Alignment explanation
Indices: 82695978--82696103 Score: 63
Period size: 7 Copynumber: 17.3 Consensus size: 7
82695968 CAAGGGTTGA
82695978 GGTTTAG
1 GGTTTAG
*
82695985 AGATTTAG
1 -GGTTTAG
82695993 GGTTTAG
1 GGTTTAG
*
82696000 AGATTTAG
1 -GGTTTAG
*
82696008 GGTTTAAA
1 GGTTT-AG
*
82696016 GGTTAAG
1 GGTTTAG
*
82696023 GGTCTAG
1 GGTTTAG
*
82696030 GAGTTAAG
1 G-GTTTAG
**
82696038 GGTCCAAG
1 GGT-TTAG
*
82696046 GGTTAAG
1 GGTTTAG
*
82696053 GGTTAAG
1 GGTTTAG
*
82696060 GGTTAAG
1 GGTTTAG
** *
82696067 GGTACAT
1 GGTTTAG
82696074 GGTTTAG
1 GGTTTAG
82696081 GGTTTAG
1 GGTTTAG
*
82696088 GGTTTAA
1 GGTTTAG
*
82696095 AGTTTAG
1 GGTTTAG
82696102 GG
1 GG
82696104 GTTAAGGGTC
Statistics
Matches: 91, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
7 63 0.69
8 28 0.31
ACGTcount: A:0.26, C:0.03, G:0.37, T:0.33
Consensus pattern (7 bp):
GGTTTAG
Found at i:82696025 original size:30 final size:30
Alignment explanation
Indices: 82695991--82696088 Score: 85
Period size: 30 Copynumber: 3.3 Consensus size: 30
82695981 TTAGAGATTT
* **
82695991 AGGGTTTA-GAGATTTAGGGTTTAAAGGTTA
1 AGGGTTTAGGAG-TTAAGGGTCCAAAGGTTA
* *
82696021 AGGGTCTAGGAGTTAAGGGTCCAAGGGTTA
1 AGGGTTTAGGAGTTAAGGGTCCAAAGGTTA
* * * *
82696051 AGGGTTAAGG-GTTAAGGGTAC-ATGGTTT
1 AGGGTTTAGGAGTTAAGGGTCCAAAGGTTA
82696079 AGGGTTTAGG
1 AGGGTTTAGG
82696089 GTTTAAAGTT
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
28 14 0.25
29 10 0.18
30 29 0.52
31 3 0.05
ACGTcount: A:0.27, C:0.04, G:0.39, T:0.31
Consensus pattern (30 bp):
AGGGTTTAGGAGTTAAGGGTCCAAAGGTTA
Found at i:82696030 original size:22 final size:20
Alignment explanation
Indices: 82696004--82696069 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 20
82695994 GTTTAGAGAT
*
82696004 TTAGGGTTTAAAGGTTAAGGG
1 TTAGGG-TTAAGGGTTAAGGG
*
82696025 TCTAGGAGTTAAGGGTCCAAGGG
1 T-TAGG-GTTAAGGGT-TAAGGG
82696048 TTAAGGGTTAAGGGTTAAGGG
1 TT-AGGGTTAAGGGTTAAGGG
82696069 T
1 T
82696070 ACATGGTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
21 7 0.18
22 21 0.55
23 10 0.26
ACGTcount: A:0.27, C:0.05, G:0.39, T:0.29
Consensus pattern (20 bp):
TTAGGGTTAAGGGTTAAGGG
Found at i:82696062 original size:14 final size:14
Alignment explanation
Indices: 82696006--82696119 Score: 79
Period size: 15 Copynumber: 7.8 Consensus size: 14
82695996 TTAGAGATTT
*
82696006 AGGGTTTAAAGGTTA
1 AGGG-TTAAGGGTTA
82696021 AGGGTCT-AGGAGTTA
1 AGGGT-TAAGG-GTTA
*
82696036 AGGGTCCAAGGGTTA
1 AGGGT-TAAGGGTTA
82696051 AGGGTTAAGGGTTA
1 AGGGTTAAGGGTTA
* *
82696065 AGGG-TACATGGTTT
1 AGGGTTA-AGGGTTA
*
82696079 AGGGTTTAGGGTTTA
1 AGGGTTAAGGG-TTA
* * *
82696094 AAGTTTAGGGGTTA
1 AGGGTTAAGGGTTA
82696108 AGGGTCTAAGGG
1 AGGGT-TAAGGG
82696120 CTATGAGTTG
Statistics
Matches: 77, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
13 2 0.03
14 33 0.43
15 39 0.51
16 3 0.04
ACGTcount: A:0.26, C:0.04, G:0.39, T:0.30
Consensus pattern (14 bp):
AGGGTTAAGGGTTA
Found at i:82696117 original size:8 final size:7
Alignment explanation
Indices: 82696006--82696119 Score: 79
Period size: 7 Copynumber: 15.6 Consensus size: 7
82695996 TTAGAGATTT
82696006 AGGGTTTA
1 AGGG-TTA
*
82696014 AAGGTTA
1 AGGGTTA
82696021 AGGGTCT-
1 AGGGT-TA
82696028 AGGAGTTA
1 AGG-GTTA
*
82696036 AGGGTCCA
1 AGGGT-TA
82696044 AGGGTTA
1 AGGGTTA
82696051 AGGGTTA
1 AGGGTTA
82696058 AGGGTTA
1 AGGGTTA
82696065 AGGG-TA
1 AGGGTTA
* *
82696071 CATGGTTT
1 -AGGGTTA
*
82696079 AGGGTTT
1 AGGGTTA
82696086 AGGGTTTA
1 AGGG-TTA
* *
82696094 AAGTTTA
1 AGGGTTA
*
82696101 GGGGTTA
1 AGGGTTA
82696108 AGGGTCTA
1 AGGGT-TA
82696116 AGGG
1 AGGG
82696120 CTATGAGTTG
Statistics
Matches: 84, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
6 2 0.02
7 56 0.67
8 26 0.31
ACGTcount: A:0.26, C:0.04, G:0.39, T:0.30
Consensus pattern (7 bp):
AGGGTTA
Found at i:82696504 original size:18 final size:17
Alignment explanation
Indices: 82696473--82696506 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
82696463 ATAAGTGATT
*
82696473 TTTTTTAATTTATATTG
1 TTTTTAAATTTATATTG
82696490 TTTTTAAATTATATATT
1 TTTTTAAATT-TATATT
82696507 AAATAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTTTAAATTTATATTG
Found at i:82701109 original size:14 final size:13
Alignment explanation
Indices: 82701084--82701125 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 13
82701074 TTAAATTGTA
82701084 TTTAAAATTTTAT
1 TTTAAAATTTTAT
82701097 TTTAAATATTTTAT
1 TTTAAA-ATTTTAT
82701111 TTT---ATTTTAT
1 TTTAAAATTTTAT
82701121 TTTAA
1 TTTAA
82701126 TCAGGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 10 0.38
13 6 0.23
14 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTAAAATTTTAT
Found at i:82701137 original size:105 final size:105
Alignment explanation
Indices: 82700961--82701269 Score: 423
Period size: 105 Copynumber: 3.1 Consensus size: 105
82700951 TTAACCTTAT
* *
82700961 TAATTAAATTAAATTGTAATTAAAGTTTTATTTTGAAGATATTATTTTATTTTAATTTAATCACG
1 TAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAGATATTATTTTATTTTAATTTAATCACG
*
82701026 ATAAATATTTTGTCTACTTTTATTTTAATTTTAAATTACC
66 AAAAATATTTTGTCTACTTTTATTTTAATTTTAAATTACC
* * * * *
82701066 TAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTTATTTTATTTTATTTTAATCAGG
1 TAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAGATATTATTTTATTTTAATTTAATCACG
*
82701131 AAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACC
66 AAAAATATTTTGTCTACTTTTATTTTAATTTTAAATTACC
82701171 TAATTAAATTAAATTGTATTTAAAGTTTTA---T-----T-TTATTTTA---T--TTTAATCACG
1 TAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAGATATTATTTTATTTTAATTTAATCACG
*
82701222 AAAAATATTTTGTCTACTTTTATTTT-ATTTTTAATTACC
66 AAAAATATTTTGTCTACTTTTATTTTAATTTTAAATTACC
82701261 TAATTAAAT
1 TAATTAAAT
82701270 AATCATTATT
Statistics
Matches: 191, Mismatches: 13, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
90 20 0.10
91 35 0.18
93 1 0.01
96 8 0.04
97 1 0.01
102 1 0.01
105 125 0.65
ACGTcount: A:0.36, C:0.06, G:0.05, T:0.54
Consensus pattern (105 bp):
TAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAGATATTATTTTATTTTAATTTAATCACG
AAAAATATTTTGTCTACTTTTATTTTAATTTTAAATTACC
Found at i:82701153 original size:43 final size:43
Alignment explanation
Indices: 82701105--82701252 Score: 136
Period size: 43 Copynumber: 3.3 Consensus size: 43
82701095 ATTTTAAATA
*
82701105 TTTTATTTTATTTTATTTTAATCAGGAAAAATATTTTGTCTAC
1 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
** * * ** * ** *
82701148 TTTTATTTTATTTTTAAATTACCTAATTAAATTAA-ATTGTATTTAAAG
1 TTTTATTTTA-TTTTATTTTA-ATCACGAAA--AATATT-T-TGTCTAC
82701196 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
1 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
82701239 TTTTATTTTATTTT
1 TTTTATTTTATTTT
82701253 TAATTACCTA
Statistics
Matches: 78, Mismatches: 20, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
43 27 0.35
44 11 0.14
45 8 0.10
46 8 0.10
47 11 0.14
48 13 0.17
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (43 bp):
TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
Found at i:82701209 original size:91 final size:90
Alignment explanation
Indices: 82701105--82701269 Score: 312
Period size: 91 Copynumber: 1.8 Consensus size: 90
82701095 ATTTTAAATA
*
82701105 TTTTATTTTATTTTATTTTAATCAGGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTAC
1 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTT-AATTAC
82701170 CTAATTAAATTAAATTGTATTTAAAG
65 CTAATTAAATTAAATTGTATTTAAAG
82701196 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAATTACC
1 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAATTACC
82701261 TAATTAAAT
66 TAATTAAAT
82701270 AATCATTATT
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
90 16 0.22
91 57 0.78
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (90 bp):
TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAATTACC
TAATTAAATTAAATTGTATTTAAAG
Found at i:82701511 original size:74 final size:74
Alignment explanation
Indices: 82701390--82701730 Score: 605
Period size: 74 Copynumber: 4.6 Consensus size: 74
82701380 ACACAATCAC
*
82701390 AATACATAAATATATATCATATCTTACATAATTTACATAAGATAAATAACTTACATGATTTACAT
1 AATACATAAATATATATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACAT
82701455 AACTTACAT
66 AACTTACAT
82701464 AATACATAAATATATATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACAT
1 AATACATAAATATATATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACAT
82701529 AACTTACAT
66 AACTTACAT
*
82701538 AATACAT-AATGATGTATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACA
1 AATACATAAAT-ATATATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACA
82701602 TAACTTACAT
65 TAACTTACAT
**
82701612 AATACAT-AATGACGTATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACA
1 AATACATAAAT-ATATATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACA
*
82701676 TAACCTACAT
65 TAACTTACAT
82701686 AATACATAAATATATATCATATCTTACATAATTTACATAAGATAA
1 AATACATAAATATATATCATATCTTACATAATTTACATAAGATAA
82701731 TCCCTTTTAT
Statistics
Matches: 259, Mismatches: 6, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
73 3 0.01
74 253 0.98
75 3 0.01
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.36
Consensus pattern (74 bp):
AATACATAAATATATATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACAT
AACTTACAT
Found at i:82701725 original size:9 final size:9
Alignment explanation
Indices: 82701413--82701725 Score: 155
Period size: 9 Copynumber: 33.9 Consensus size: 9
82701403 ATATCATATC
82701413 TTACATAAT
1 TTACATAAT
*
82701422 TTACATAAG
1 TTACATAAT
* * *
82701431 ATAAATAAC
1 TTACATAAT
*
82701440 TTACATGAT
1 TTACATAAT
*
82701449 TTACATAAC
1 TTACATAAT
82701458 TTACATAA-
1 TTACATAAT
82701466 -TACATAAAT
1 TTACAT-AAT
82701475 ATATATCAT-AT
1 -T-TA-CATAAT
82701486 CTTACATAAT
1 -TTACATAAT
*
82701496 TTACATAAG
1 TTACATAAT
* * *
82701505 ATAAATAAC
1 TTACATAAT
82701514 TTACATAAT
1 TTACATAAT
*
82701523 TTACATAAC
1 TTACATAAT
82701532 TTACATAA-
1 TTACATAAT
82701540 -TACATAAT
1 TTACATAAT
82701548 GATGTATCAT-AT
1 --T-TA-CATAAT
82701560 CTTACATAAT
1 -TTACATAAT
*
82701570 TTACATAAG
1 TTACATAAT
* * *
82701579 ATAAATAAC
1 TTACATAAT
82701588 TTACATAAT
1 TTACATAAT
*
82701597 TTACATAAC
1 TTACATAAT
82701606 TTACATAA-
1 TTACATAAT
82701614 -TACATAA-
1 TTACATAAT
*
82701621 TGACGTATCATAT
1 TTAC--AT-A-AT
82701634 CTTACATAAT
1 -TTACATAAT
*
82701644 TTACATAAG
1 TTACATAAT
* * *
82701653 ATAAATAAC
1 TTACATAAT
82701662 TTACATAAT
1 TTACATAAT
*
82701671 TTACATAAC
1 TTACATAAT
*
82701680 CTACATAA-
1 TTACATAAT
82701688 -TACATAAAT
1 TTACAT-AAT
82701697 ATATATCAT-AT
1 -T-TA-CATAAT
82701708 CTTACATAAT
1 -TTACATAAT
82701718 TTACATAA
1 TTACATAA
82701726 GATAATCCCT
Statistics
Matches: 236, Mismatches: 40, Indels: 56
0.71 0.12 0.17
Matches are distributed among these distances:
7 24 0.10
8 6 0.03
9 158 0.67
10 16 0.07
11 9 0.04
12 11 0.05
13 9 0.04
14 3 0.01
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (9 bp):
TTACATAAT
Found at i:82706775 original size:13 final size:14
Alignment explanation
Indices: 82706759--82706787 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82706749 TTCTAAATAT
82706759 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
82706772 TTATAATTGTTTAA
1 TTATAATTGTTTAA
82706786 TT
1 TT
82706788 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:82707255 original size:21 final size:21
Alignment explanation
Indices: 82707201--82707262 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
82707191 AACTTAGAGA
82707201 GGAGGCAGCA-GCAGCAGCGAG
1 GGAGGCAG-AGGCAGCAGCGAG
* * *
82707222 GAAGGCAGCGGCAGCAGTGAG
1 GGAGGCAGAGGCAGCAGCGAG
*
82707243 GGAGGCAGAGGCAGTAGCGA
1 GGAGGCAGAGGCAGCAGCGA
82707263 TGGCAGCAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.19, G:0.48, T:0.03
Consensus pattern (21 bp):
GGAGGCAGAGGCAGCAGCGAG
Found at i:82709739 original size:10 final size:10
Alignment explanation
Indices: 82709726--82709754 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
82709716 TTTTATTAAA
82709726 AAATATTTTT
1 AAATATTTTT
82709736 AAAT-TTTTT
1 AAATATTTTT
82709745 AAATATTTTT
1 AAATATTTTT
82709755 GAATTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
AAATATTTTT
Found at i:82709750 original size:19 final size:19
Alignment explanation
Indices: 82709726--82709764 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
82709716 TTTTATTAAA
*
82709726 AAATATTTTTAAATTTTTT
1 AAATATTTTTAAATTATTT
*
82709745 AAATATTTTTGAATTATTT
1 AAATATTTTTAAATTATTT
82709764 A
1 A
82709765 TAATTACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
AAATATTTTTAAATTATTT
Found at i:82718757 original size:18 final size:18
Alignment explanation
Indices: 82718643--82718757 Score: 79
Period size: 18 Copynumber: 6.3 Consensus size: 18
82718633 AGCAATTAAT
*
82718643 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* *
82718663 CAATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* * *
82718680 CAATTATTTATTTAGTAA
1 CAATCAGTTATTCAGTAA
* * *
82718698 CAGTCAGTTACTCGGTAA
1 CAATCAGTTATTCAGTAA
* *
82718716 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
** *
82718734 TGATCAGTTATTCAGTAT
1 CAATCAGTTATTCAGTAA
82718752 CAATCA
1 CAATCA
82718758 ATTGATCGGT
Statistics
Matches: 68, Mismatches: 26, Indels: 4
0.69 0.27 0.04
Matches are distributed among these distances:
17 12 0.18
18 48 0.71
20 8 0.12
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.34
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:82718832 original size:19 final size:19
Alignment explanation
Indices: 82718783--82718832 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
82718773 AATAACAGTT
82718783 AATTATTCAGTAAAAATCA
1 AATTATTCAGTAAAAATCA
* * *
82718802 AA-TATACAGTAACAATTA
1 AATTATTCAGTAAAAATCA
82718820 AATTATTCAGTAA
1 AATTATTCAGTAA
82718833 TAGTCGAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (19 bp):
AATTATTCAGTAAAAATCA
Found at i:82719020 original size:53 final size:53
Alignment explanation
Indices: 82718959--82719086 Score: 195
Period size: 53 Copynumber: 2.4 Consensus size: 53
82718949 GAACAATAAC
*
82718959 AGTAACAGTAGCAGTACGGTACACAGAGTACCTCATCAGAACAAATCC-AGAAT
1 AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA-AAT
* * *
82719012 GGTAACAGTAACAATACGGTACATAGAGTACCTCATCAGAACAAATCCGAAAT
1 AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGAAAT
82719065 AGTAACAGTAACAGTAACGGTA
1 AGTAACAGTAACAGT-ACGGTA
82719087 ACGATAATAA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
53 60 0.90
54 7 0.10
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (53 bp):
AGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGAAAT
Found at i:82719138 original size:12 final size:12
Alignment explanation
Indices: 82719121--82719145 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82719111 AGTGTCGAAT
82719121 CGGTAACAGTAA
1 CGGTAACAGTAA
82719133 CGGTAACAGTAA
1 CGGTAACAGTAA
82719145 C
1 C
82719146 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:82719555 original size:2 final size:2
Alignment explanation
Indices: 82719548--82719574 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
82719538 AAACACCTAC
82719548 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
82719575 TAAATAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82720203 original size:4 final size:4
Alignment explanation
Indices: 82720186--82720243 Score: 75
Period size: 4 Copynumber: 14.2 Consensus size: 4
82720176 CTCCTTTTTC
82720186 CTTT CTTT -TCTT CTTT CTTT CTTT CTTT CTTT CCTTT CTTT -TCTT CTTT
1 CTTT CTTT CT-TT CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CT-TT CTTT
82720235 CTTT CTTT C
1 CTTT CTTT C
82720244 CTTCCCCTAC
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.04
4 41 0.84
5 6 0.12
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
CTTT
Found at i:82721067 original size:59 final size:53
Alignment explanation
Indices: 82720945--82721062 Score: 173
Period size: 53 Copynumber: 2.2 Consensus size: 53
82720935 TAATTGATAT
*
82720945 TGTTACTGTTACTGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAC
1 TGTTACTGTTACCGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAC
* * * * *
82720998 TATTAATGTTACCGTTTCGGATTTGTTCTGATGAGGTACTCTGTGTACTGTAC
1 TGTTACTGTTACCGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAC
*
82721051 TGCTACTGTTAC
1 TGTTACTGTTAC
82721063 TGTTACTGTT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (53 bp):
TGTTACTGTTACCGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAC
Found at i:82721212 original size:19 final size:19
Alignment explanation
Indices: 82721190--82721239 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
82721180 AGATCGACTA
82721190 TTACTGAATAATTTAATTG
1 TTACTGAATAATTTAATTG
* * * *
82721209 TTACTGTAT-ATCTGATTT
1 TTACTGAATAATTTAATTG
82721227 TTACTGAATAATT
1 TTACTGAATAATT
82721240 GACTGTTATT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (19 bp):
TTACTGAATAATTTAATTG
Found at i:82721296 original size:18 final size:18
Alignment explanation
Indices: 82721272--82721383 Score: 84
Period size: 18 Copynumber: 6.1 Consensus size: 18
82721262 AATTGATTGA
82721272 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* *
82721290 TATTGAATAATTGATTGA-
1 TACTGAATAACTGATT-AT
* *
82721308 TACCGAATAACTGATTGT
1 TACTGAATAACTGATTAT
* *
82721326 TACTGAATAAATAATTAT
1 TACTGAATAACTGATTAT
* * *
82721344 T-CTGATTGACTGATTGT
1 TACTGAATAACTGATTAT
*
82721361 TAATGAATATTACTGATTGAT
1 TACTGAATA--ACTGATT-AT
82721382 TA
1 TA
82721384 ATTGCTATTG
Statistics
Matches: 69, Mismatches: 19, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
17 12 0.17
18 46 0.67
19 1 0.01
20 7 0.10
21 3 0.04
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:82721309 original size:36 final size:36
Alignment explanation
Indices: 82721262--82721335 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
82721252 ATAACCGATC
* *
82721262 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTGATTGATACCGAATAACTGATTATTACTGAAT
*
82721298 AATTGATTGATACCGAATAACTGATTGTTACTGAAT
1 AATTGATTGATACCGAATAACTGATTATTACTGAAT
82721334 AA
1 AA
82721336 ATAATTATTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (36 bp):
AATTGATTGATACCGAATAACTGATTATTACTGAAT
Found at i:82721395 original size:28 final size:27
Alignment explanation
Indices: 82721341--82721395 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
82721331 AATAAATAAT
* *
82721341 TATTCTGATTGACTGATTGTTAATGAA
1 TATTCTGATTGACTAATTGCTAATGAA
* *
82721368 TATTACTGATTGATTAATTGCTATTGAA
1 TATT-CTGATTGACTAATTGCTAATGAA
82721396 AAATAATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.45
Consensus pattern (27 bp):
TATTCTGATTGACTAATTGCTAATGAA
Found at i:82724853 original size:40 final size:39
Alignment explanation
Indices: 82724808--82724937 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
82724798 CGGAATACAA
82724808 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
82724848 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
82724888 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
82724928 CCGGATATAA
1 CCGGATATAA
82724938 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:82732920 original size:40 final size:39
Alignment explanation
Indices: 82732875--82733004 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
82732865 CGGAATACAA
82732875 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
82732915 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
82732955 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
82732995 CCGGATATAA
1 CCGGATATAA
82733005 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:82735004 original size:22 final size:22
Alignment explanation
Indices: 82734976--82735019 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
82734966 CCAAGCACTA
*
82734976 TAAGTAAGTGCCTTTTCCATTC
1 TAAGTAACTGCCTTTTCCATTC
82734998 TAAGTAACTGCCTTTTCCATTC
1 TAAGTAACTGCCTTTTCCATTC
82735020 CTTAAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (22 bp):
TAAGTAACTGCCTTTTCCATTC
Found at i:82735660 original size:2 final size:2
Alignment explanation
Indices: 82735653--82735762 Score: 111
Period size: 2 Copynumber: 56.0 Consensus size: 2
82735643 CAAAGTATGC
82735653 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * * *
82735695 AG A- AA AC AT AT AT AT GA- AT CA- AT TT CT AT AT AT AC AT -T TT
1 AT AT AT AT AT AT AT AT -AT AT -AT AT AT AT AT AT AT AT AT AT AT
82735735 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82735763 TTTTTTTAAA
Statistics
Matches: 93, Mismatches: 9, Indels: 12
0.82 0.08 0.11
Matches are distributed among these distances:
1 4 0.04
2 87 0.94
3 2 0.02
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:82738598 original size:2 final size:2
Alignment explanation
Indices: 82738591--82738629 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
82738581 TTAGTTTTAT
82738591 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82738630 GAAGCATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:82740394 original size:68 final size:68
Alignment explanation
Indices: 82740232--82740444 Score: 363
Period size: 68 Copynumber: 3.1 Consensus size: 68
82740222 ATCTACTCCG
* * *
82740232 CTGAAACTTCAAGGAGATCTACTATGGCTTTTAGCCGCTCCAATGCCATTTCAGGGAAAAAGAGA
1 CTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCA-GGAAGAAGAGA
*
82740297 TCCA
65 TTCA
* *
82740301 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
82740366 TCA
66 TCA
82740369 CTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
82740434 TCA
66 TCA
82740437 CTGAAACT
1 CTGAAACT
82740445 GAGCTCCAAC
Statistics
Matches: 136, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
68 87 0.64
69 49 0.36
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
TCA
Found at i:82740469 original size:42 final size:42
Alignment explanation
Indices: 82740405--82740486 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
82740395 GCTTTTAGCC
*
82740405 GCTCCAACGCCATTTCAGGAAGAAGAGATTCACTGAAACTGA
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTGA
82740447 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACT
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACT
82740487 TCAAGGAGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (42 bp):
GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTGA
Found at i:82740531 original size:110 final size:110
Alignment explanation
Indices: 82740338--82740554 Score: 389
Period size: 110 Copynumber: 2.0 Consensus size: 110
82740328 CTTTTAGCCA
*
82740338 CTCCAACGCCATTTCAGGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTAG
1 CTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTAG
* *
82740403 CCGCTCCAACGCCATTTCAGGAAGAAGAGATTCACTGAAACTGAG
66 CCGCTCCAACCCCATTTCAAGAAGAAGAGATTCACTGAAACTGAG
*
82740448 CTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAG
1 CTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTAG
*
82740513 CCGCTCTAACCCCATTTCAAGAAGAAGAGATTCACTGAAACT
66 CCGCTCCAACCCCATTTCAAGAAGAAGAGATTCACTGAAACT
82740555 TCAAGGAGAT
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
110 102 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (110 bp):
CTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTAG
CCGCTCCAACCCCATTTCAAGAAGAAGAGATTCACTGAAACTGAG
Found at i:82740536 original size:68 final size:68
Alignment explanation
Indices: 82740447--82740952 Score: 859
Period size: 68 Copynumber: 7.4 Consensus size: 68
82740437 CTGAAACTGA
82740447 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
82740512 GCC
66 GCC
* *
82740515 GCTCTAACCCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
82740580 GCC
66 GCC
* *
82740583 GCTCCAACGCCATTTCAGGAAGAAAAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
*
82740648 GCT
66 GCC
*
82740651 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGAAGATCTGCTGTGGCTTTTA
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
*
82740716 GTC
66 GCC
* * *
82740719 GCTCCAATGACATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAAATCTGCTGTGGCTTTTA
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
82740784 GCC
66 GCC
* * *
82740787 GCTCCAACGCTATTTCAGGAAGAAGAGATTCACTGAAACTTCAAGGAGATTTGCTGTGGCTTTTA
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
82740852 GCC
66 GCC
* * *
82740855 GCTCCAACGTCATTTCAGGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTA
1 GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
82740920 GCC
66 GCC
*
82740923 GCTCCAACGCCATTTCAGGAAGAAGAGATT
1 GCTCCAACGCCATTTCAAGAAGAAGAGATT
82740953 TGTAATTCAG
Statistics
Matches: 410, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 410 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (68 bp):
GCTCCAACGCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTA
GCC
Found at i:82740590 original size:178 final size:179
Alignment explanation
Indices: 82740268--82740622 Score: 613
Period size: 178 Copynumber: 2.0 Consensus size: 179
82740258 GCTTTTAGCC
* *
82740268 GCTCCAATGCCATTTCAGGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTT
1 GCTCCAACGCCATTTCAGAGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTT
* *
82740333 AGCCACTCCAACGCCATTTCAGGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCT
66 AGCCACTCCAACCCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCT
*
82740398 TTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGATTCACTGAAACTGA
131 TTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGATTCACTGAAACTGA
* *
82740447 GCTCCAACGCCATTTCA-AGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTT
1 GCTCCAACGCCATTTCAGAGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTT
* * *
82740511 AGCCGCTCTAACCCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCT
66 AGCCACTCCAACCCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCT
82740576 TTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGATTCACTGAAACT
131 TTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGATTCACTGAAACT
82740623 TCAAGGAGAT
Statistics
Matches: 166, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
178 150 0.90
179 16 0.10
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (179 bp):
GCTCCAACGCCATTTCAGAGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTT
AGCCACTCCAACCCCATTTCAAGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTACTGTGGCT
TTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGATTCACTGAAACTGA
Found at i:82740667 original size:246 final size:247
Alignment explanation
Indices: 82740232--82740690 Score: 794
Period size: 246 Copynumber: 1.9 Consensus size: 247
82740222 ATCTACTCCG
** *
82740232 CTGAAACTTCAAGGAGATCTACTATGGCTTTTAGCCGCTCCAATGCCATTTCAGGGAAAAAGAGA
1 CTGAAACTTCAAGGAGATCTACTATGGCTTTTAGCCGCTCCAACCCCATTTCAGAGAAAAAGAGA
*
82740297 TCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAGGAAGAAG
66 TCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAGGAAGAAA
*
82740362 AGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAG
131 AGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAG
82740427 AAGAGATTCACTGAAACTGAGCTCCAACGCCATTTCAAGAAGAAGAGATTCA
196 AAGAGATTCACTGAAACTGAGCTCCAACGCCATTTCAAGAAGAAGAGATTCA
* * * *
82740479 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCTAACCCCATTTCA-AGAAGAAGAGA
1 CTGAAACTTCAAGGAGATCTACTATGGCTTTTAGCCGCTCCAACCCCATTTCAGAGAAAAAGAGA
* *
82740543 TTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAA
66 TCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAGGAAGAAA
* *
82740608 AGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCTGCTCCAACGCCATTTCAAGAAG
131 AGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAG
82740673 AAGAGATTCACTGAAACT
196 AAGAGATTCACTGAAACT
82740691 TCAAGAAGAT
Statistics
Matches: 199, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
246 151 0.76
247 48 0.24
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (247 bp):
CTGAAACTTCAAGGAGATCTACTATGGCTTTTAGCCGCTCCAACCCCATTTCAGAGAAAAAGAGA
TCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAGGAAGAAA
AGATTCACTGAAACTTCAAGGAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAG
AAGAGATTCACTGAAACTGAGCTCCAACGCCATTTCAAGAAGAAGAGATTCA
Found at i:82741236 original size:65 final size:65
Alignment explanation
Indices: 82741155--82741280 Score: 216
Period size: 65 Copynumber: 1.9 Consensus size: 65
82741145 TGTATCTATG
*
82741155 TTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
1 TTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
* * *
82741220 TTTATGTCAAATAATTAGGATGTTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 TTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
82741281 TTATTATATG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (65 bp):
TTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
Found at i:82743293 original size:40 final size:39
Alignment explanation
Indices: 82743248--82743377 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
82743238 ATGCTGGAAT
*
82743248 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* **
82743288 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
82743328 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
82743368 TTATATCCGG
1 TTATATCCGG
82743378 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:82751333 original size:40 final size:39
Alignment explanation
Indices: 82751288--82751417 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
82751278 ATGCTGGAAT
*
82751288 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* **
82751328 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
82751368 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
82751408 TTATATCCGG
1 TTATATCCGG
82751418 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:82753841 original size:47 final size:49
Alignment explanation
Indices: 82753719--82753898 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
82753709 TGTAACCCGC
* * * *
82753719 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
82753765 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
82753815 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
82753859 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
82753899 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:82753887 original size:94 final size:93
Alignment explanation
Indices: 82753727--82753898 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
82753717 GCCCATAAGT
* * *
82753727 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
82753792 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82753820 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
82753885 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
82753899 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82756823 original size:46 final size:45
Alignment explanation
Indices: 82756749--82756909 Score: 170
Period size: 46 Copynumber: 3.6 Consensus size: 45
82756739 GTCGATGCCG
* * *
82756749 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGTGCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCTAA-CGTGCCGACGCA
*
82756795 TGTCCCAGACATGTCTTACACTAGCACATCT--CTTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTAACGT-GCCGACGCA
* * *
82756839 TGTCCCAGACATGTCTGACACTGGCTATCATCTCAA-G-GCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCT-AACGTGCCGACGCA
82756885 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
82756910 CCTCGTCTCA
Statistics
Matches: 98, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
43 2 0.02
44 31 0.32
45 1 0.01
46 63 0.64
47 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTAACGTGCCGACGCA
Found at i:82756851 original size:44 final size:46
Alignment explanation
Indices: 82756789--82756954 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 46
82756779 TAACCGTGCT
*
82756789 GACGCATGTCCCAGACATGTCTTACACTAGC-A-CATCTCTTA-GCC
1 GACGCATGTCCCAGACATGTCTTACACTAGCTATCATCTC-AAGGCC
* *
82756833 GACGCATGTCCCAGACATGTCTGACACTGGCTATCATCTCAAGGCC
1 GACGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCAAGGCC
* ** * * *
82756879 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGTC
1 GACGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCAAGGCC
* * *
82756925 GATGCCATGTCTCATACATGGTCTTACACT
1 GACG-CATGTCCCAGACAT-GTCTTACACT
82756955 GGCACACAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
44 29 0.28
45 2 0.02
46 51 0.49
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (46 bp):
GACGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCAAGGCC
Found at i:82759525 original size:47 final size:49
Alignment explanation
Indices: 82759403--82759582 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
82759393 TGTAACCCGC
* * * *
82759403 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
82759449 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
82759499 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
82759543 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
82759583 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:82759571 original size:94 final size:93
Alignment explanation
Indices: 82759411--82759582 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
82759401 GCCCATAAGT
* * *
82759411 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
82759476 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82759504 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
82759569 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
82759583 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82762730 original size:8 final size:8
Alignment explanation
Indices: 82762719--82762788 Score: 72
Period size: 8 Copynumber: 8.9 Consensus size: 8
82762709 CTTTTTGGCA
82762719 TTTTTTTG
1 TTTTTTTG
82762727 -TTTTTTG
1 TTTTTTTG
82762734 TTTTTTTG
1 TTTTTTTG
*
82762742 TTGTTTTG
1 TTTTTTTG
* *
82762750 TTTTCTTC
1 TTTTTTTG
*
82762758 TTCTTTT-
1 TTTTTTTG
*
82762765 TTTTTGTG
1 TTTTTTTG
82762773 TTTTTTTGG
1 TTTTTTT-G
82762782 TTTTTTT
1 TTTTTTT
82762789 TTAATTTTGA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
7 12 0.24
8 30 0.60
9 8 0.16
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.83
Consensus pattern (8 bp):
TTTTTTTG
Found at i:82762733 original size:18 final size:16
Alignment explanation
Indices: 82762719--82762788 Score: 58
Period size: 15 Copynumber: 4.4 Consensus size: 16
82762709 CTTTTTGGCA
82762719 TTTTTTTGTTTTTT-G
1 TTTTTTTGTTTTTTGG
82762734 TTTTTTTGTTGTTTT-G
1 TTTTTTTGTT-TTTTGG
* *
82762750 TTTTCTTCTTCTTTT--
1 TTTTTTTGTT-TTTTGG
*
82762765 TTTTTGTGTTTTTTTGG
1 TTTTTTTG-TTTTTTGG
82762782 TTTTTTT
1 TTTTTTT
82762789 TTAATTTTGA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
15 19 0.43
16 19 0.43
17 6 0.14
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.83
Consensus pattern (16 bp):
TTTTTTTGTTTTTTGG
Found at i:82766371 original size:129 final size:132
Alignment explanation
Indices: 82766146--82766449 Score: 341
Period size: 129 Copynumber: 2.3 Consensus size: 132
82766136 GAGATTGCAG
* * * *
82766146 CCCAGCACGATAGGGCACTATTCCCCGAACTGCCAAACATCGAACACTTCTTTCGTTTTAAAGGG
1 CCCAACACGATAGGGCACTATTCCCCGAATTGCCAAACATCGAACACTCCTTTCGTTTGAAAGGG
* ** * * *
82766211 TTTTTAGAAAACGTGAATGAAATTTCGAAGGAATCTTCGATTGTTTAGAACAAATGAAAAAGCGC
66 TTTTTAGAAAACATGAATGAAACCTCAAAGGAATATTCGATTATTTAGAACAAATGAAAAAGCGC
82766276 AA
131 AA
* * *
82766278 CCCAACACGATAGGGCACGA-TCCTCAAATTGCCAAACATCGAACA-TCCTTT-GTATTGAAA-G
1 CCCAACACGATAGGGCACTATTCCCCGAATTGCCAAACATCGAACACTCCTTTCGT-TTGAAAGG
* * * * *
82766339 GTTTTTA-ATAAACATGAGTGAAAACCT-AAAGGAATATTCGATTATTTTGAGCAAATGAGAAAT
65 GTTTTTAGA-AAACATGAATG-AAACCTCAAAGGAATATTCGATTATTTAGAACAAATGAAAAAG
*
82766402 TGCAA
128 CGCAA
* * *
82766407 CCCAACACGTTAGGGCACTATTCCGCGAATTGCCAAATATCGA
1 CCCAACACGATAGGGCACTATTCCCCGAATTGCCAAACATCGA
82766450 GTCTCGTCGT
Statistics
Matches: 144, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
128 1 0.01
129 70 0.49
130 33 0.23
131 22 0.15
132 18 0.12
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (132 bp):
CCCAACACGATAGGGCACTATTCCCCGAATTGCCAAACATCGAACACTCCTTTCGTTTGAAAGGG
TTTTTAGAAAACATGAATGAAACCTCAAAGGAATATTCGATTATTTAGAACAAATGAAAAAGCGC
AA
Found at i:82766639 original size:2 final size:2
Alignment explanation
Indices: 82766632--82766656 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82766622 AGTTTTATTT
82766632 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
82766657 GAAGCATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82766795 original size:13 final size:15
Alignment explanation
Indices: 82766761--82766811 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
82766751 TGAAAATGAT
82766761 ATAATAAGTATAATAA
1 ATAAT-AGTATAATAA
*
82766777 ATAATAGTGTAA-AA
1 ATAATAGTATAATAA
82766791 A-AATAGTATAATAA
1 ATAATAGTATAATAA
82766805 ATAATAG
1 ATAATAG
82766812 GAAAATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 9 0.29
14 6 0.19
15 11 0.35
16 5 0.16
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (15 bp):
ATAATAGTATAATAA
Found at i:82770009 original size:20 final size:18
Alignment explanation
Indices: 82769981--82770039 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 18
82769971 AAAACTTATT
82769981 TAAAATTTATTAAGAATTA
1 TAAAATTTATTAA-AATTA
* *
82770000 TAAGAATTTATAAATAATGA
1 TAA-AATTTATTAA-AATTA
82770020 TTAAAATTT-TTAAAATTA
1 -TAAAATTTATTAAAATTA
82770038 TA
1 TA
82770040 TATATACATG
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 2 0.06
18 4 0.12
19 6 0.18
20 18 0.55
21 3 0.09
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TAAAATTTATTAAAATTA
Found at i:82770318 original size:18 final size:17
Alignment explanation
Indices: 82770295--82770339 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
82770285 ATAATTATTA
*
82770295 AAATTTTATTTATTTTT
1 AAATTTTATTAATTTTT
82770312 AAGATTTT-TTAATTTTT
1 AA-ATTTTATTAATTTTT
82770329 AAATATTTATT
1 AAAT-TTTATT
82770340 GATGTGGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 2 0.08
17 15 0.62
18 7 0.29
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
AAATTTTATTAATTTTT
Found at i:82773477 original size:4 final size:4
Alignment explanation
Indices: 82773468--82773497 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
82773458 GCCATACGAG
82773468 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
82773498 TCTAGGATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:82775747 original size:59 final size:60
Alignment explanation
Indices: 82775562--82775750 Score: 197
Period size: 60 Copynumber: 3.1 Consensus size: 60
82775552 ATAAATTTAA
* * * * ** * * *
82775562 GTACCAAATTGAACCTAAAAAAAAGCTTAAGTACTAAATTAAAAAAAAATGCTAAGTTTAG
1 GTACCAAATTG-GCCCAAAAAAAAGTTTAAGTACCAAATTAGGAAAAAGTGCCAAGTTCAG
82775623 GTACCAAATTGGCCCAAAAAAAAGTTTAAGTACCAAATTAGGAAAAAGTGCCAAGTTCCA-
1 GTACCAAATTGGCCCAAAAAAAAGTTTAAGTACCAAATTAGGAAAAAGTGCCAAGTT-CAG
* * * *
82775683 ATACCAAATTGTG-CC-AAAAAAATTTTAAGTACCAAATT-GAGCAAAAGTGTCAAGTTCAG
1 GTACCAAATTG-GCCCAAAAAAAAGTTTAAGTACCAAATTAG-GAAAAAGTGCCAAGTTCAG
82775742 GTACCAAAT
1 GTACCAAAT
82775751 GTTATATTAA
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
58 3 0.03
59 44 0.40
60 50 0.45
61 13 0.12
ACGTcount: A:0.47, C:0.15, G:0.14, T:0.23
Consensus pattern (60 bp):
GTACCAAATTGGCCCAAAAAAAAGTTTAAGTACCAAATTAGGAAAAAGTGCCAAGTTCAG
Found at i:82779664 original size:96 final size:96
Alignment explanation
Indices: 82779494--82779818 Score: 373
Period size: 96 Copynumber: 3.4 Consensus size: 96
82779484 AGAGGTGAAT
* * * ** * *
82779494 TGCCGATGCCATGTCACAGACATGGTCTTACACTGGCTCACATGTTGAGACCGATGCCATGTTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTTCC
* * * *
82779559 AGACGTGGTCTTACACTAGCTCTCGTCTCAA
66 AAACATGGTCTTACACTAGCTCTCATATCAA
* * * *
82779590 TGCCAATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGTTGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTTCC
* * * *
82779655 AAACATGGTCTTACACTAGCGCACCTAACAA
66 AAACATGGTCTTACACTAGCTCTCATATCAA
* * * ** * *
82779686 TGCCGATGCCACGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGCTGATGCCATGTTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTTCC
*
82779751 AAACATGGTCTTATACTAGCTCTCATATC-A
66 AAACATGGTCTTACACTAGCTCTCATATCAA
* *
82779781 TGGCCGACGCCATGTCCCAGACATGGTTTTACACTAGC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
82779819 ACACATATCA
Statistics
Matches: 190, Mismatches: 38, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
95 2 0.01
96 188 0.99
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTTCC
AAACATGGTCTTACACTAGCTCTCATATCAA
Found at i:82779760 original size:144 final size:144
Alignment explanation
Indices: 82779544--82779818 Score: 356
Period size: 144 Copynumber: 1.9 Consensus size: 144
82779534 CATGTTGAGA
* * * * * ** *
82779544 CCGATGCCATGTTCCAGACGTGGTCTTACACTAGCTCTCGTCTCAATGCCAATGCCATGTCTCAG
1 CCGATGCCACGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCAATGCCATGTCTCAA
* **
82779609 ACATGGTCTTACACTAGCTCTCATAAT-GTGGCCGTTGCCATGTCCCAAACATGGTCTTACACTA
66 ACATGGTCTTACACTAGCTCTCAT-ATCATGGCCGACGCCATGTCCCAAACATGGTCTTACACTA
82779673 GCGCACCTAACAATG
130 GCGCACCTAACAATG
* * **
82779688 CCGATGCCACGTCCCAAACATGGTCTTACACTGGCTCTCATAACATTGCTGATGCCATGT-TCCA
1 CCGATGCCACGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCAATGCCATGTCT-CA
* * *
82779752 AACATGGTCTTATACTAGCTCTCATATCATGGCCGACGCCATGTCCCAGACATGGTTTTACACTA
65 AACATGGTCTTACACTAGCTCTCATATCATGGCCGACGCCATGTCCCAAACATGGTCTTACACTA
82779817 GC
130 GC
82779819 ACACATATCA
Statistics
Matches: 111, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
143 3 0.03
144 108 0.97
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (144 bp):
CCGATGCCACGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCAATGCCATGTCTCAA
ACATGGTCTTACACTAGCTCTCATATCATGGCCGACGCCATGTCCCAAACATGGTCTTACACTAG
CGCACCTAACAATG
Found at i:82779826 original size:48 final size:48
Alignment explanation
Indices: 82779495--82779828 Score: 318
Period size: 48 Copynumber: 7.0 Consensus size: 48
82779485 GAGGTGAATT
* * * *
82779495 GCCGATGCCATGTCACAGACATGGTCTTACACTGGCTCACATGT--TG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATG
* * * *
82779541 AGACCGATGCCATGTTCCAGACGTGGTCTTACACTAGCTCTCGTCTCAAT-
1 -G-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATG
* * *
82779591 GCCAATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCATG
* * * * * *
82779639 GCCGTTGCCATGTCCCAAACATGGTCTTACACTAGCGCACCTAACAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATG
* * * * *
82779687 GCCGATGCCACGTCCCAAACATGGTCTTACACTGGCTCTCATAACATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATG
* * * *
82779735 GCTGATGCCATGTTCCAAACATGGTCTTATACTAGCTCTCATATCATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATG
* * * *
82779783 GCCGACGCCATGTCCCAGACATGGTTTTACACTAGCACACATATCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
82779829 CCCAAATGTC
Statistics
Matches: 234, Mismatches: 44, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
47 5 0.02
48 225 0.96
49 3 0.01
51 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATG
Found at i:82781293 original size:49 final size:48
Alignment explanation
Indices: 82781236--82781505 Score: 251
Period size: 49 Copynumber: 5.7 Consensus size: 48
82781226 GTAAAGTGTT
*
82781236 GATGCCATGTCCCACACATGGTCTTACACTAGCTATCATCTTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-TCGAGGCC
* *
82781285 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATAACTG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-T--C-GAGGCC
82781335 -ATGCCATGTCCCAGACATGGTCTTACACT-GAC-A-CATCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCTCG-AGGCC
* * * * *
82781380 GATG-CATGTCCCGGACAT-GTCTTACACTAGC-ACTCGTCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCTCGAGGCC
* * * *
82781426 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-CTCGAGGCC
*
82781474 GATG-CATGTCCAAGACAT-GTCTTACACTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT
82781506 CACACAAATG
Statistics
Matches: 185, Mismatches: 20, Indels: 35
0.77 0.08 0.15
Matches are distributed among these distances:
44 13 0.07
45 19 0.10
46 27 0.15
47 29 0.16
48 25 0.14
49 67 0.36
50 4 0.02
51 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCGAGGCC
Found at i:82781502 original size:94 final size:91
Alignment explanation
Indices: 82781235--82781504 Score: 294
Period size: 94 Copynumber: 2.9 Consensus size: 91
82781225 GGTAAAGTGT
* * * *
82781235 TGATGCCATGTCCCACACATGGTCTTACACTAGCTATCATCTTCGAGGCCGATGCCATGTCCCAG
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--TT-GTGGCCGATG-CATGTCCCAG
*
82781300 ACATGGTCTTACACTAGCTCTCACATAACTG
62 ACAT-GTCTTACACTAGCACTCACATAACTG
* * * * *
82781331 TGCCATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TCGTAGCCGATGCATGTCCCGGA
1 TG--ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATTGTGGCCGATGCATGTCCCAGA
*
82781395 CATGTCTTACACTAGCACTCGTC-TCAA-TG
63 CATGTCTTACACTAGCACTC-ACAT-AACTG
*
82781424 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCAAGA
1 -TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT--TGTGGCCGATGCATGTCCCAGA
82781489 CATGTCTTACACTAGC
63 CATGTCTTACACTAGC
82781505 TCACACAAAT
Statistics
Matches: 148, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
91 2 0.01
92 33 0.22
93 19 0.13
94 52 0.35
95 8 0.05
96 3 0.02
98 29 0.20
99 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (91 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTGTGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCACTCACATAACTG
Found at i:82784771 original size:48 final size:47
Alignment explanation
Indices: 82784684--82784892 Score: 201
Period size: 48 Copynumber: 4.4 Consensus size: 47
82784674 GGGACATAAC
* * * * *
82784684 GTCTGCGACATGGCATCGGCA-TTGATATGTGCGCTAGTGTAAGACCAT
1 GTCTGGGACATGGCATCGGCACAT--TATGAGAGCCAGTGTAAGACCAT
*
82784732 GTTTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCAT
1 GTCTGGGACATGGCATCGG-CACATTATGAGAGCCAGTGTAAGACCAT
* *
82784780 GTCTGGGACATGGCATC-G-ACATTGAGACGAGAGCTAGTGTAAGACCAT
1 GTCTGGGACATGGCATCGGCACATT---ATGAGAGCCAGTGTAAGACCAT
* * *
82784828 GTCTGGGGCATGGCATCGGCATCGA-CATGTGAGCCAGTGTAAGACCAT
1 GTCTGGGACATGGCATCGGCA-C-ATTATGAGAGCCAGTGTAAGACCAT
* *
82784876 GTTTGGAACATGGCATC
1 GTCTGGGACATGGCATC
82784893 AGCAATTCAC
Statistics
Matches: 135, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
45 5 0.04
47 1 0.01
48 122 0.90
49 3 0.02
50 2 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (47 bp):
GTCTGGGACATGGCATCGGCACATTATGAGAGCCAGTGTAAGACCAT
Found at i:82784820 original size:158 final size:158
Alignment explanation
Indices: 82784548--82784834 Score: 400
Period size: 158 Copynumber: 1.8 Consensus size: 158
82784538 ACATTTGGGG
*
82784548 TGATATGTCTGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCACGATATGAAAGCCAGTG
1 TGATATGTCTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAAAGCCAGTG
* * ** **** *
82784613 TAAGATCATGTTTGGAACATGACATCGGTGATGTTTTGAGAGCTAGTGTAAGACCATGTTTGGGA
66 TAAGACCATGTCTGGAACATGACATCGGACATGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
82784678 CATAACGTCTGCGACATGGCATCGGCAT
131 CATAACGTCTGCGACATGGCATCGGCAT
* *
82784706 TGATATGTGC-GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC-ATTATGAGAGCCAG
1 TGATATGT-CTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGA-TATGAAAGCCAG
* *
82784769 TGTAAGACCATGTCTGGGACATGGCATC-GACATTGAGACGAGAGCTAGTGTAAGACCATGTCTG
64 TGTAAGACCATGTCTGGAACATGACATCGGACA-TGAGACGAGAGCTAGTGTAAGACCATGTCTG
82784833 GG
128 GG
82784835 GCATGGCATC
Statistics
Matches: 112, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
157 3 0.03
158 108 0.96
159 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (158 bp):
TGATATGTCTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAAAGCCAGTG
TAAGACCATGTCTGGAACATGACATCGGACATGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
CATAACGTCTGCGACATGGCATCGGCAT
Found at i:82784862 original size:96 final size:96
Alignment explanation
Indices: 82784684--82784892 Score: 278
Period size: 96 Copynumber: 2.2 Consensus size: 96
82784674 GGGACATAAC
* * * * * * *
82784684 GTCTGCGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATGTTTGGGACATGGCATC
1 GTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
*
82784749 GGCCACATTATGAGAGCCAGTGTAAGACCAT
66 GGCCACATCATGAGAGCCAGTGTAAGACCAT
*
82784780 GTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGGCATGGCATC
1 GTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
*
82784845 GG-CATCGA-CATGTGAGCCAGTGTAAGACCAT
66 GGCCA-C-ATCATGAGAGCCAGTGTAAGACCAT
* *
82784876 GTTTGGAACATGGCATC
1 GTCTGGGACATGGCATC
82784893 AGCAATTCAC
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
95 2 0.02
96 96 0.97
97 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (96 bp):
GTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
GGCCACATCATGAGAGCCAGTGTAAGACCAT
Found at i:82785169 original size:58 final size:58
Alignment explanation
Indices: 82785079--82785194 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
82785069 GAATGAAACG
82785079 AGTAAGTTCTAGCTATGAAAATGATCTTGGGACGATATTGAAATCTTTGGTTGATACT
1 AGTAAGTTCTAGCTATGAAAATGATCTTGGGACGATATTGAAATCTTTGGTTGATACT
82785137 AGTAAGTTCTAGCTATGAAAATGATCTTGGGACGATATTGAAATCTTTGGTTGATACT
1 AGTAAGTTCTAGCTATGAAAATGATCTTGGGACGATATTGAAATCTTTGGTTGATACT
82785195 TGTGATATAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (58 bp):
AGTAAGTTCTAGCTATGAAAATGATCTTGGGACGATATTGAAATCTTTGGTTGATACT
Found at i:82787786 original size:25 final size:25
Alignment explanation
Indices: 82787758--82787805 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82787748 AGGTAAAGCA
* *
82787758 CCTACATGGATATACGCCATTCGCG
1 CCTACAAGGACATACGCCATTCGCG
*
82787783 CCTATAAGGACATACGCCATTCG
1 CCTACAAGGACATACGCCATTCG
82787806 TACCCGCGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (25 bp):
CCTACAAGGACATACGCCATTCGCG
Found at i:82792454 original size:48 final size:48
Alignment explanation
Indices: 82792393--82792668 Score: 201
Period size: 48 Copynumber: 5.9 Consensus size: 48
82792383 ACATTTGGGT
* * *
82792393 GATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * ** *
82792441 GATATGAGAGCCAGTGTAAGATCATGTTTGGAACATGGCATTGGTGAT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * *
82792489 GTTGTGAGAGCCAGTGTAAGACCATGTCTGTGACATGGCATC-GACATT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C
* * * * *
82792537 GATAT--GTG-C-G-CT-AGTCTATGTCTGGGACATGGCATCAGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* *
82792579 -ATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATT
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C
* * * * * * *
82792627 GAGACGAGATCTAGGGTAAGACCATGTATGGGACATGACATC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
82792669 TATAACAACC
Statistics
Matches: 175, Mismatches: 42, Indels: 22
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.01
42 24 0.14
43 4 0.02
44 3 0.02
45 2 0.01
46 3 0.02
47 5 0.03
48 132 0.75
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
Found at i:82792646 original size:138 final size:137
Alignment explanation
Indices: 82792416--82792668 Score: 332
Period size: 138 Copynumber: 1.8 Consensus size: 137
82792406 GTGTAAGACC
* *
82792416 ATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGATCATGTTTGGAACATGGCA
1 ATGTCTAGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCA
* * * * * * *
82792481 TTGGTGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGTGACATGGCATCGACATTGATATGTGC
66 TCGGTCA-GTTGAGAGAGCCAGGGTAAGACCATGTATGGGACATGACATCGACATTGATATGTGC
82792546 GCTAGTCT
130 GCTAGTCT
* *
82792554 ATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGC
1 ATGTCTAGGACATGGCATCAGCCACGA-TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGC
*
82792618 ATCGG-CA-TTGAGACGAGATCTAGGGTAAGACCATGTATGGGACATGACATC
65 ATCGGTCAGTTGAGA-GAG--CCAGGGTAAGACCATGTATGGGACATGACATC
82792669 TATAACAACC
Statistics
Matches: 99, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
135 5 0.05
136 3 0.03
137 2 0.02
138 89 0.90
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (137 bp):
ATGTCTAGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCA
TCGGTCAGTTGAGAGAGCCAGGGTAAGACCATGTATGGGACATGACATCGACATTGATATGTGCG
CTAGTCT
Found at i:82807262 original size:21 final size:20
Alignment explanation
Indices: 82807228--82807266 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
82807218 ATAATTAACA
*
82807228 ATAAAAATTTAAAAGAAAAAC
1 ATAAAAATTGAAAA-AAAAAC
*
82807249 ATAAAACTTGAAAAAAAA
1 ATAAAAATTGAAAAAAAA
82807267 TTTCTATGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (20 bp):
ATAAAAATTGAAAAAAAAAC
Found at i:82810491 original size:32 final size:32
Alignment explanation
Indices: 82810454--82810520 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
82810444 CTGAGTTGAG
82810454 TGTCTTACTTGCATAATGAATAGCTCCAACTA
1 TGTCTTACTTGCATAATGAATAGCTCCAACTA
82810486 TGTCTTACTTGCATAATGAATAGCTCCAACTA
1 TGTCTTACTTGCATAATGAATAGCTCCAACTA
82810518 TGT
1 TGT
82810521 TATTTCTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (32 bp):
TGTCTTACTTGCATAATGAATAGCTCCAACTA
Found at i:82814326 original size:60 final size:60
Alignment explanation
Indices: 82814232--82814360 Score: 217
Period size: 60 Copynumber: 2.1 Consensus size: 60
82814222 TGATGATGAA
82814232 AAAAAGGAAAAGAAAGAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAA-GAAAAGAAAGAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
82814293 AAAAAGAAAA-AAA-AAAAAAGAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAGAAAAGAAAGAAAAAA-A-AAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
82814353 AAAAAGAA
1 AAAAAGAA
82814361 GGAAAAAGAG
Statistics
Matches: 66, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
58 6 0.09
59 4 0.06
60 51 0.77
61 5 0.08
ACGTcount: A:0.55, C:0.09, G:0.20, T:0.16
Consensus pattern (60 bp):
AAAAAGAAAAGAAAGAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
Found at i:82815747 original size:39 final size:40
Alignment explanation
Indices: 82815612--82815866 Score: 308
Period size: 40 Copynumber: 6.5 Consensus size: 40
82815602 CGGATGATAA
* * *
82815612 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-TAT
* *
82815652 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
* * *
82815692 CCGGGCTAAGTCCCGAAGGCATTTGTATGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
* *
82815732 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
82815771 CCGGGCTAAGTCCCGAAGGCATTGGT-CGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
82815810 CCGGGCTATGTCCCGAAGGCA-TTG-AGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTA-CTATAT
* *
82815849 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82815867 TACTTGGCTT
Statistics
Matches: 188, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
38 17 0.09
39 79 0.42
40 92 0.49
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
Found at i:82815756 original size:79 final size:80
Alignment explanation
Indices: 82815612--82815866 Score: 342
Period size: 79 Copynumber: 3.2 Consensus size: 80
82815602 CGGATGATAA
* * **
82815612 CCGGGCTAAGTCCCGAAGGCATTTGCACT-AGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTA-TGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTT
82815676 GTGCGAGCTACTATAT
65 GTGCGAGCTACTATAT
*
82815692 CCGGGCTAAGTCCCGAAGGCATTTGTATGAGTTATTACAT-CGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTATGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
82815756 TGCGAGCTACTATAT
66 TGCGAGCTACTATAT
* * * *
82815771 CCGGGCTAAGTCCCGAAGGCATTGGT-CGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTATGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
82815834 AGCGAG-TAGCTATAT
66 TGCGAGCTA-CTATAT
* *
82815849 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82815867 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
77 16 0.10
78 26 0.16
79 84 0.53
80 33 0.21
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTATGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGCTACTATAT
Found at i:82822504 original size:55 final size:55
Alignment explanation
Indices: 82822419--82822548 Score: 210
Period size: 55 Copynumber: 2.4 Consensus size: 55
82822409 ATGATGAAAA
* *
82822419 AAAGGAAAAGAAAGAAAA-A-AAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAAAAAAAGAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
82822472 AAAGAAAAAGAAAAAAAAGAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAAAAAAAGAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
*
82822527 AAAGAAAAAGAAGGAAAAAGAG
1 AAAGAAAAAGAA-AAAAAAGAG
82822549 CTTTGAGGAA
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
53 16 0.23
54 1 0.01
55 46 0.65
56 8 0.11
ACGTcount: A:0.52, C:0.09, G:0.23, T:0.15
Consensus pattern (55 bp):
AAAGAAAAAGAAAAAAAAGAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
Found at i:82823845 original size:39 final size:39
Alignment explanation
Indices: 82823788--82824040 Score: 304
Period size: 39 Copynumber: 6.5 Consensus size: 39
82823778 CGGATGATAA
* *
82823788 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TAT
*
82823828 CC-GGCTAAGTCCCGAAGGCATTTGTGTGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
82823867 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
82823906 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
82823946 CC-GGCTAAGTCCCGAAGGCATTGGT-CGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
82823984 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
82824023 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82824041 TACTTGGCTT
Statistics
Matches: 188, Mismatches: 18, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
38 32 0.17
39 118 0.63
40 38 0.20
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:82824000 original size:118 final size:117
Alignment explanation
Indices: 82823788--82824014 Score: 336
Period size: 118 Copynumber: 1.9 Consensus size: 117
82823778 CGGATGATAA
*
82823788 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGCTAAGTCCCGAAGGCATTTGT
*
82823853 GTGAGCTACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTATTACAT
66 GTGAGCTACTATATCCGGGCTAAGTCCGAAGGCA-TTGAGCGAGTTATTACAT
*
82823906 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGCTAAGTCCCGAAGGCA-TT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGCTAAGTCCCGAAGGCATTT
* *
82823968 G-GTCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTGAGCGAGT
64 GTGT-GAGCTACTATATCCGGGCTAAGT-CCGAAGGCATTGAGCGAGT
82824015 AGCTATATCC
Statistics
Matches: 100, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
116 2 0.02
117 34 0.34
118 63 0.63
119 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (117 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGCTAAGTCCCGAAGGCATTTGT
GTGAGCTACTATATCCGGGCTAAGTCCGAAGGCATTGAGCGAGTTATTACAT
Found at i:82826421 original size:31 final size:33
Alignment explanation
Indices: 82826369--82826445 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 33
82826359 ATCTTTACAC
* * * *
82826369 TGTACTGCTACTGTATAAGGGC-TTGCCCAGAT
1 TGTACTGATACTGAATAAGGGCATGGCCCAAAT
82826401 TGTA-TGGATACTGAAT-AGGGCATGGCCCAAAT
1 TGTACT-GATACTGAATAAGGGCATGGCCCAAAT
82826433 TGTACTGATACTG
1 TGTACTGATACTG
82826446 TGTTGTTCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
31 6 0.16
32 31 0.82
33 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (33 bp):
TGTACTGATACTGAATAAGGGCATGGCCCAAAT
Found at i:82832216 original size:47 final size:47
Alignment explanation
Indices: 82832162--82832354 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
82832152 TTAGGATTTT
** * *
82832162 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
82832209 ATGTGATGAATGTGAGCATGCAT-TATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
82832255 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
82832302 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
82832349 ATGTGA
1 ATGTGA
82832355 AATATGTATG
Statistics
Matches: 131, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 45 0.34
47 86 0.66
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:82832261 original size:22 final size:22
Alignment explanation
Indices: 82832191--82832261 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
82832181 GTATATATGA
82832191 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
82832213 GATGAATGTG-AGCAT-G-CATTATGT
1 GAT-AA-G-GCCGAATGGCCA--ATGT
82832237 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
82832259 GAT
1 GAT
82832262 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
21 1 0.03
22 16 0.43
23 6 0.16
24 13 0.35
25 1 0.03
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:82832266 original size:93 final size:94
Alignment explanation
Indices: 82832162--82832354 Score: 271
Period size: 93 Copynumber: 2.1 Consensus size: 94
82832152 TTAGGATTTT
** * * *
82832162 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
*
82832227 TGCAT-TATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAAGCCGAATGGCCA
* * * *
82832255 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
* *
82832320 TGCATATATGTGGTAAAGCCGAATGGCTA
66 TGCATATATGTGATAAAGCCGAATGGCCA
82832349 ATGTGA
1 ATGTGA
82832355 AATATGTATG
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
93 61 0.70
94 26 0.30
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
TGCATATATGTGATAAAGCCGAATGGCCA
Found at i:82832310 original size:25 final size:25
Alignment explanation
Indices: 82832235--82832310 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
82832225 CATGCATTAT
82832235 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
82832260 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
82832282 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
82832307 GTGA
1 GTGA
82832311 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:82832445 original size:93 final size:96
Alignment explanation
Indices: 82832325--82832505 Score: 307
Period size: 95 Copynumber: 1.9 Consensus size: 96
82832315 GAACATGCAT
*
82832325 ATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
82832388 GAATGGC-AATGTGAAATATGTATGATATGC
66 GAATGGCTAATGTGAAATATGTATGATATGC
82832418 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
*
82832482 CGAATGGCTAGTGTGAAATATGTA
65 CGAATGGCTAATGTGAAATATGTA
82832506 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
92 1 0.01
93 27 0.33
94 2 0.02
95 38 0.46
96 14 0.17
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTGAAATATGTATGATATGC
Found at i:82832521 original size:50 final size:48
Alignment explanation
Indices: 82832324--82832505 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
82832314 TGAACATGCA
82832324 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
82832372 TATATGTGGTAAAGCCGAATGGC-AATGTGAAATATGTAT--GATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
82832417 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
82832467 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
82832506 GGCGATGTGC
Statistics
Matches: 122, Mismatches: 5, Indels: 14
0.87 0.04 0.10
Matches are distributed among these distances:
45 27 0.22
46 6 0.05
47 18 0.15
48 36 0.30
49 2 0.02
50 32 0.26
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:82832760 original size:37 final size:37
Alignment explanation
Indices: 82832652--82832760 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
82832642 GGAAATATAT
*
82832652 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
82832689 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
82832726 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
82832761 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:82834343 original size:39 final size:40
Alignment explanation
Indices: 82834025--82834331 Score: 489
Period size: 40 Copynumber: 7.8 Consensus size: 40
82834015 GAGAATTGAG
82834025 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
82834065 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
82834104 AGTG--ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
82834142 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
82834182 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
82834222 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
82834262 AGTGATATATCCGTGATAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
82834301 GGTGTTATAT-CGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
82834332 ATCATGCTGG
Statistics
Matches: 248, Mismatches: 15, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
37 6 0.02
38 36 0.15
39 68 0.27
40 138 0.56
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:82838534 original size:47 final size:47
Alignment explanation
Indices: 82838480--82838673 Score: 264
Period size: 47 Copynumber: 4.1 Consensus size: 47
82838470 TTAGGATTTT
* ** * * *
82838480 ATGTGATGAATTTGAATGTGTATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
82838527 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
82838574 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
82838621 ATGTGATGAATATGAACATGCCTATATGTGGTGAA-GCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGAT-AAGGCCGAATGGCCA
82838668 ATGTGA
1 ATGTGA
82838674 AATATGTATG
Statistics
Matches: 132, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
47 130 0.98
48 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:82838580 original size:22 final size:22
Alignment explanation
Indices: 82838552--82838627 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
82838542 ACATGCATAT
82838552 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
82838574 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
82838596 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
82838621 ATGTGAT
1 ATGTGAT
82838628 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:82838810 original size:98 final size:96
Alignment explanation
Indices: 82838644--82838827 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
82838634 GAACATGCCT
* * *
82838644 ATATGTGGTGAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
82838709 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
82838740 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
82838804 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
82838828 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:82838843 original size:50 final size:48
Alignment explanation
Indices: 82838643--82838827 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
82838633 TGAACATGCC
*
82838643 TATATGTGGTGAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
82838691 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
82838739 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
82838789 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
82838828 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.62
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:82839082 original size:37 final size:37
Alignment explanation
Indices: 82838974--82839082 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
82838964 GGAAATATAT
*
82838974 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
82839011 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
82839048 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
82839083 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:82842451 original size:93 final size:93
Alignment explanation
Indices: 82842337--82842508 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
82842327 GCCCATAAGT
* * *
82842337 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82842402 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82842430 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82842495 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
82842509 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82842504 original size:46 final size:46
Alignment explanation
Indices: 82842329--82842504 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
82842319 TGTAACCCGC
* * * *
82842329 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
*
82842375 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTAG---CAT
* * *
82842425 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
82842468 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82842505 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
Found at i:82842523 original size:46 final size:45
Alignment explanation
Indices: 82842380--82842523 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
82842370 TGCATCCATA
* *
82842380 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
82842428 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
82842473 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
82842519 AGTGA
1 AGTGA
82842524 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:82850126 original size:19 final size:18
Alignment explanation
Indices: 82850093--82850137 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
82850083 GCTTTTTTTT
82850093 CTTTCTTTCTTCCC-TATC
1 CTTTCTTTCTTCCCTTA-C
*
82850111 CTTTCTTCTTTTCCCTTAC
1 CTTTCTT-TCTTCCCTTAC
82850130 CTTTCTTT
1 CTTTCTTT
82850138 TCCCCTTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 14 0.58
20 2 0.08
ACGTcount: A:0.04, C:0.36, G:0.00, T:0.60
Consensus pattern (18 bp):
CTTTCTTTCTTCCCTTAC
Found at i:82854472 original size:58 final size:58
Alignment explanation
Indices: 82854365--82854474 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 58
82854355 AAATTCACAT
* * *
82854365 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGACCCCTTTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGACCCCGTTAGGCCCAAATC
* * * *
82854423 ACCTGTATATGGGCCATTAGGCCCAAATCACATTTATATG-GCCCGTTAGGCC
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTCATATGACCCCGTTAGGCC
82854475 AACTCACATT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
58 31 0.70
59 13 0.30
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGACCCCGTTAGGCCCAAATC
Found at i:82854481 original size:28 final size:29
Alignment explanation
Indices: 82854374--82854489 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
82854364 TACCTGTATC
* * *
82854374 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * * *
82854402 TGACCCCTTTAGGCCCAAATCACCTGTATA
1 TG-GCCCATTAGGCCCAAATCACATTTATA
*
82854432 TGGGCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
82854461 TGGCCCGTTAGG-CCAACTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
82854489 T
1 T
82854490 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
28 17 0.24
29 42 0.60
30 11 0.16
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:82857075 original size:42 final size:42
Alignment explanation
Indices: 82857018--82857147 Score: 224
Period size: 42 Copynumber: 3.1 Consensus size: 42
82857008 TCTCGATATA
82857018 ATATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
82857060 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
82857102 ATATATATCCAGGTTAAATCCCGTAGGCTTAGTGCTGGTACT
1 ATATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
82857144 ATAT
1 ATAT
82857148 CCGGACTTAG
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (42 bp):
ATATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:82871221 original size:28 final size:28
Alignment explanation
Indices: 82871156--82871254 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
82871146 TCATGAATTG
* * *
82871156 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
82871185 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
82871213 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
*
82871241 GAACTAAGTGTGCG
1 GCACTAAGTGTGCG
82871255 GGCTTATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 1 0.02
28 44 0.71
29 17 0.27
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:82880079 original size:28 final size:29
Alignment explanation
Indices: 82880047--82880162 Score: 130
Period size: 29 Copynumber: 4.0 Consensus size: 29
82880037 TACCTGTATC
* *
82880047 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
82880075 TGGCCCCTTTAGGCCCAAATCACCTAT-ATA
1 TGG-CCCATTAGGCCCAAATCACAT-TCATA
82880105 TGGCCCATTAGGCCCAAATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
** *
82880134 TGGCCTGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
82880162 T
1 T
82880163 TTGTGCTTAC
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
28 17 0.23
29 45 0.60
30 12 0.16
31 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:82880145 original size:58 final size:57
Alignment explanation
Indices: 82880038--82880149 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 57
82880028 AAATTCACAT
* * *
82880038 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCCTTTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGG-CCCTTTAGGCCCAAATC
*
82880096 ACCTATATATGGCCCATTAGGCCCAAATCACATTCATATGG-CCTGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCT-TTAGGCCCA
82880150 GTCACATTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
57 3 0.06
58 30 0.62
59 15 0.31
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCTTTAGGCCCAAATC
Found at i:82881670 original size:9 final size:9
Alignment explanation
Indices: 82881656--82881687 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
82881646 AAATTCAAGA
82881656 TTTTGGGAT
1 TTTTGGGAT
82881665 TTTTGGG--
1 TTTTGGGAT
82881672 TTTTGGGAT
1 TTTTGGGAT
82881681 TTTTGGG
1 TTTTGGG
82881688 GCGTTACACG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.06, C:0.00, G:0.38, T:0.56
Consensus pattern (9 bp):
TTTTGGGAT
Found at i:82881677 original size:16 final size:16
Alignment explanation
Indices: 82881656--82881687 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
82881646 AAATTCAAGA
82881656 TTTTGGGATTTTTGGG
1 TTTTGGGATTTTTGGG
82881672 TTTTGGGATTTTTGGG
1 TTTTGGGATTTTTGGG
82881688 GCGTTACACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.00, G:0.38, T:0.56
Consensus pattern (16 bp):
TTTTGGGATTTTTGGG
Found at i:82882854 original size:27 final size:27
Alignment explanation
Indices: 82882811--82883042 Score: 150
Period size: 27 Copynumber: 8.6 Consensus size: 27
82882801 TTAGTTTACC
* *
82882811 AATTA-CAGAAATGCCCTCGACTTGTAA
1 AATTACCA-AAATACCCTCGATTTGTAA
* * *
82882838 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAAATACCCTCGATTTGTAA
* * ***
82882865 AATCACTATTTTACCCTCGATTTAG-AA
1 AATTACCAAAATACCCTCGATTT-GTAA
*** *
82882892 AATTACCATTTTACCCTCGA-TTGTGA
1 AATTACCAAAATACCCTCGATTTGTAA
* ** *** *
82882918 AATTACTAAAATACCCTATACAGGGTAG
1 AATTACCAAAATACCCTCGA-TTTGTAA
*
82882946 AATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTCGA-TTTGTAA
* *
82882973 AATTACCAAAATACCACTAG-TTTGTGA
1 AATTACCAAAATACC-CTCGATTTGTAA
* *
82883000 AATTACCAAAATACCTTCAATTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
82883027 AATTACCAAAATACCC
1 AATTACCAAAATACCC
82883043 CTGATTTACA
Statistics
Matches: 157, Mismatches: 40, Indels: 16
0.74 0.19 0.08
Matches are distributed among these distances:
25 1 0.01
26 18 0.11
27 118 0.75
28 20 0.13
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTGTAA
Found at i:82883055 original size:27 final size:28
Alignment explanation
Indices: 82882946--82883058 Score: 117
Period size: 27 Copynumber: 4.2 Consensus size: 28
82882936 TACAGGGTAG
*
82882946 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGAGTTTGCAA
* **
82882973 AATTACCAAAATACCACT-AGTTTGTGA
1 AATTACCAAAATACCCCTGAGTTTGCAA
* * * *
82883000 AATTACCAAAATA-CCTTCAATTTGTAA
1 AATTACCAAAATACCCCTGAGTTTGCAA
*
82883027 AATTACCAAAATACCCCTGA-TTTACAA
1 AATTACCAAAATACCCCTGAGTTTGCAA
82883054 AATTA
1 AATTA
82883059 TAGAAATACC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.03
27 68 0.92
28 4 0.05
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.30
Consensus pattern (28 bp):
AATTACCAAAATACCCCTGAGTTTGCAA
Found at i:82883057 original size:54 final size:54
Alignment explanation
Indices: 82882946--82883124 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 54
82882936 TACAGGGTAG
* * ***
82882946 AATTACCAAAATACC-CCTAGTTTGTAAAATTACCAAAATACCACT-AGTTTGTGA
1 AATTACCAAAATACCTTC-AATTTGTAAAATTACCAAAATACCACTGA-TTTACAA
*
82883000 AATTACCAAAATACCTTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCTTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
* * * * * * *
82883054 AATTA-TAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATA-CCTTCAATTTGT-AAAATTACCA-AAATACCACTGATTTACAA
*
82883110 AATTACTAAAATACC
1 AATTACCAAAATACC
82883125 CTTGGTTTGT
Statistics
Matches: 104, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
53 1 0.01
54 54 0.52
55 14 0.13
56 33 0.32
57 2 0.02
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCTTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
Found at i:82883065 original size:27 final size:27
Alignment explanation
Indices: 82883035--82883128 Score: 111
Period size: 27 Copynumber: 3.4 Consensus size: 27
82883025 AAAATTACCA
*
82883035 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
82883062 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
82883091 AAATACCATTGGTTTACAAAATTACTA-
1 AAATACCCTTGATTTACAAAATTA-TAG
82883118 AAATACCCTTG
1 AAATACCCTTG
82883129 GTTTGTAGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
27 29 0.50
28 8 0.14
29 21 0.36
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:82883216 original size:27 final size:27
Alignment explanation
Indices: 82883173--82883238 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
82883163 AAATGGCTAA
*
82883173 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
82883200 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
82883227 AATACCCCTGTA
1 AATACCCCTGTA
82883239 TGGTTAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 3 0.09
27 29 0.88
28 1 0.03
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:82884146 original size:24 final size:25
Alignment explanation
Indices: 82884070--82884139 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
82884060 AGGAAGTGCT
* * * *
82884070 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
82884095 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
82884120 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
82884140 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:82884152 original size:24 final size:24
Alignment explanation
Indices: 82884095--82884166 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
82884085 TAGTTTACCG
82884095 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
82884119 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
82884143 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
82884167 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:82890181 original size:25 final size:25
Alignment explanation
Indices: 82890152--82890199 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
82890142 TTATAATATG
* *
82890152 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
82890177 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
82890200 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:82890266 original size:20 final size:20
Alignment explanation
Indices: 82890243--82890281 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
82890233 TAAACATGGT
82890243 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
82890263 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
82890282 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:82890388 original size:24 final size:24
Alignment explanation
Indices: 82890332--82890496 Score: 187
Period size: 24 Copynumber: 7.0 Consensus size: 24
82890322 GAGGAAGTGA
* * *
82890332 AAAAGGGTTTACGCCCTAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
82890355 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
82890379 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
82890403 AAAAGAGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
82890426 TAAAGGGCTTATGCCCTAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
82890450 AAAAGGGCTT-TGCCCCAGTTA-C
1 AAAAGGGCTTATGCCCCAGTTATC
*
82890472 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAAG-GGCTTATGCC-CCAGTTAT
82890497 ATGATAAAGG
Statistics
Matches: 122, Mismatches: 13, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
23 55 0.45
24 60 0.49
25 7 0.06
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:82890448 original size:71 final size:70
Alignment explanation
Indices: 82890344--82890496 Score: 220
Period size: 71 Copynumber: 2.2 Consensus size: 70
82890334 AAGGGTTTAC
* *
82890344 GCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-TCAAAAG
1 GCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTT-TGCCCCAGTTACT-AAAAG
*
82890408 A-GCTTAT
64 AGGC-TAG
*
82890415 GCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATAAAAAGGGCTTTGCCCCAGTTACTAAAAGAG
1 GCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTGCCCCAGTTACTAAAAGAG
82890480 GCTAG
66 GCTAG
82890485 GCCTCCAGTTAT
1 GCC-CCAGTTAT
82890497 ATGATAAAGG
Statistics
Matches: 75, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
70 22 0.29
71 53 0.71
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (70 bp):
GCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTGCCCCAGTTACTAAAAGAG
GCTAG
Found at i:82893352 original size:49 final size:49
Alignment explanation
Indices: 82893296--82893461 Score: 278
Period size: 49 Copynumber: 3.4 Consensus size: 49
82893286 TACATATATG
* * * *
82893296 TGTGATGAGGCCTAATGGCCTATGTGATGAATGTAAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
82893345 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
82893394 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
82893443 TGAGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
82893462 TAATGTAAAA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Done.