Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 267 of 438
Found at i:82893613 original size:37 final size:37
Alignment explanation
Indices: 82893563--82893684 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
82893553 GGAATATGTT
*
82893563 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
82893600 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
82893637 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
82893674 CCGGGTAAGAC
1 CCGGGTAAGAC
82893685 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:82896980 original size:2 final size:2
Alignment explanation
Indices: 82896973--82897004 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
82896963 CATTTTAACT
82896973 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
82897005 GCACAAATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:82913653 original size:30 final size:30
Alignment explanation
Indices: 82913617--82913717 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
82913607 GACAAGATTG
* * *
82913617 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82913647 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82913675 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
82913704 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82913718 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:82913729 original size:29 final size:28
Alignment explanation
Indices: 82913646--82913721 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
82913636 AAAATTGTAC
* *
82913646 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
82913674 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
82913703 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
82913722 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:82921508 original size:30 final size:30
Alignment explanation
Indices: 82921472--82921572 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
82921462 GACAAGATTG
* * *
82921472 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82921502 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82921530 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
82921559 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82921573 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:82921584 original size:29 final size:28
Alignment explanation
Indices: 82921501--82921576 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
82921491 AAAATTGTAC
* *
82921501 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
82921529 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
82921558 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
82921577 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:82930390 original size:40 final size:40
Alignment explanation
Indices: 82930346--82930471 Score: 146
Period size: 40 Copynumber: 3.1 Consensus size: 40
82930336 TAGCGACTAC
* *
82930346 ATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTCGTTAT
* * ** * *
82930386 ATCCGGGCTAATACCCGAAGGTTTTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTCGTTAT
* *
82930426 ATCCGGGCTAAGA-CTCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCT-GAAGGCATTCGTGCAAGTCGTTAT
82930466 ATCCGG
1 ATCCGG
82930472 TTGTATTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 68 0.99
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
ATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTCGTTAT
Found at i:82938512 original size:40 final size:40
Alignment explanation
Indices: 82938424--82938593 Score: 157
Period size: 40 Copynumber: 4.2 Consensus size: 40
82938414 ATGCTAGTAA
* * *
82938424 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CG
1 TTATATCCGGGCTAAGACCTGAAGGC-ATTCGTGCAAGTCG
* * *
82938463 ACTACATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTTG
1 -TTATATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTCG
* * * ** *
82938504 TTAAATCCGGGCTAATACCCGAAGGTTTTTGTGCAAGTCG
1 TTATATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTCG
* * *
82938544 TTCTATCCGGGCTAAGA-CTCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCT-GAAGGCATTCGTGCAAGTCG
82938584 TTATATCCGG
1 TTATATCCGG
82938594 TTGTATTCCG
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
39 4 0.04
40 98 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTCG
Found at i:82938536 original size:80 final size:80
Alignment explanation
Indices: 82938428--82938593 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 80
82938418 TAGTAATTAT
* *
82938428 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-CG-ACTACATCCGGGCTAAGAC-CTGAAGGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACT--ATCCGGGCTAAGACTC-GAAGGC
*
82938490 ATTCGTGCAAGTTGTTAA
63 ATTCGTGCAAGTGGTTAA
* *** *
82938508 ATCCGGGCTAATACCCGAAGGTTTTTGTGCAAGTCGTTCTATCCGGGCTAAGACTCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACTCGAAGGCATT
* *
82938573 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
82938588 ATCCGG
1 ATCCGG
82938594 TTGTATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
80 68 0.93
81 3 0.04
82 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACTCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:82942434 original size:41 final size:41
Alignment explanation
Indices: 82942389--82942505 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82942379 TGAAAGATAA
82942389 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * *
82942430 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAA-GATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82942459 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82942500 ATGTAG
1 ATGTAG
82942506 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 8, Indels: 28
0.60 0.09 0.31
Matches are distributed among these distances:
28 1 0.02
29 8 0.15
30 4 0.07
31 6 0.11
32 2 0.04
33 2 0.04
34 1 0.02
36 1 0.02
37 2 0.04
38 2 0.04
39 6 0.11
40 4 0.07
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:82942477 original size:70 final size:71
Alignment explanation
Indices: 82942357--82942519 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
82942347 GAGATGTATC
82942357 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82942422 AGGACA
66 AGGACA
82942428 CCATGTAGACAAGAGAGCTACGTG-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82942492 AGGACA
66 AGGACA
82942498 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82942520 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 68 0.74
71 24 0.26
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82948743 original size:39 final size:39
Alignment explanation
Indices: 82948689--82948814 Score: 216
Period size: 39 Copynumber: 3.2 Consensus size: 39
82948679 TTCAGTGATG
82948689 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
82948728 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
82948767 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
82948806 TATGTCCGG
1 TATATCCGG
82948815 GCTAAAGTCC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:82948841 original size:78 final size:78
Alignment explanation
Indices: 82948689--82948852 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
82948679 TTCAGTGATG
* * * **
82948689 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
*
82948754 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
82948767 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGTAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
*
82948831 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
82948845 TATA-CCGG
1 TATATCCGG
82948853 GTTTAAATTC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 9 0.12
78 65 0.88
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:82948879 original size:38 final size:38
Alignment explanation
Indices: 82948707--82948884 Score: 139
Period size: 39 Copynumber: 4.6 Consensus size: 38
82948697 GACTTAGGGT
* **
82948707 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGT-
1 CCGCAGGCTATGTGCTGGAATTATA-CCGG-GTTAAAGTC
* *
82948746 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGT-
1 CCGCAGGCTATGTGCTGGAATTATA-CCGG-GTTAAAGTC
* * * *
82948785 CCGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTC
1 CCGCAGGCTATGTGCTGGAATTAT-ACCGGGTTAAAGTC
* * * *
82948824 CCGTAGGCT-TCGAGCTGGTATTATACCGGGTTTAAATTC
1 CCGCAGGCTAT-GTGCTGGAATTATACCGGG-TTAAAGTC
82948863 CCGCAGGCT-TGTGCTGGTAATT
1 CCGCAGGCTATGTGCTGG-AATT
82948885 GGTTTCAAGT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 16 0.14
39 100 0.86
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (38 bp):
CCGCAGGCTATGTGCTGGAATTATACCGGGTTAAAGTC
Found at i:82958136 original size:494 final size:494
Alignment explanation
Indices: 82957209--82958196 Score: 1940
Period size: 494 Copynumber: 2.0 Consensus size: 494
82957199 TTATCACATA
82957209 TACGTAAGCTTACAAATCATAATCCTTACCTTGTACTGGCACATCTAGCTCAACCCAACCCATAC
1 TACGTAAGCTTACAAATCATAATCCTTACCTTGTACTGGCACATCTAGCTCAACCCAACCCATAC
82957274 TCAAATCATAAGGCTTTTGGGCAGAATACGCACTAATACATAAGAATATTTCATCGCATACTTTA
66 TCAAATCATAAGGCTTTTGGGCAGAATACGCACTAATACATAAGAATATTTCATCGCATACTTTA
82957339 TTATACAAACATACCATTACCAATTAGATCATTCTCATATTTGGAGTTATAATATTAATCACATT
131 TTATACAAACATACCATTACCAATTAGATCATTCTCATATTTGGAGTTATAATATTAATCACATT
82957404 TACCTACCTCTTTGATACTGATAATTCACCTCGAAATCACTCCACCGATGAGTAAGTAATACGTA
196 TACCTACCTCTTTGATACTGATAATTCACCTCGAAATCACTCCACCGATGAGTAAGTAATACGTA
82957469 CCTAAACATCTTAAATACATAATACTTATTTGATGGTAACTTAATGCAGATACTCAATATCAAAG
261 CCTAAACATCTTAAATACATAATACTTATTTGATGGTAACTTAATGCAGATACTCAATATCAAAG
82957534 TCTTACTTGAATCCTAGCATTTAGCCGTCGGGTCTTTAAAGCTCGGATATAGTACGAGCACGAAG
326 TCTTACTTGAATCCTAGCATTTAGCCGTCGGGTCTTTAAAGCTCGGATATAGTACGAGCACGAAG
* *
82957599 CCTACGGACATTAATCGGGATAATATTCTCGCATAAAGCCTGCGGGGTTTTAACCCGGATATAGT
391 CCTACGGACATTAATCAGGATAATATTCTCGCATAAAGCCTGCGAGGTTTTAACCCGGATATAGT
82957664 ACTGACACAAATGCCCTTCGGGACTTATCACATTTATAC
456 ACTGACACAAATGCCCTTCGGGACTTATCACATTTATAC
82957703 TACGTAAGCTTACAAATCATAATCCTTACCTTGTACTGGCACATCTAGCTCAACCCAACCCATAC
1 TACGTAAGCTTACAAATCATAATCCTTACCTTGTACTGGCACATCTAGCTCAACCCAACCCATAC
82957768 TCAAATCATAAGGCTTTTGGGCAGAATACGCACTAATACATAAGAATATTTCATCGCATACTTTA
66 TCAAATCATAAGGCTTTTGGGCAGAATACGCACTAATACATAAGAATATTTCATCGCATACTTTA
82957833 TTATACAAACATACCATTACCAATTAGATCATTCTCATATTTGGAGTTATAATATTAATCACATT
131 TTATACAAACATACCATTACCAATTAGATCATTCTCATATTTGGAGTTATAATATTAATCACATT
*
82957898 TACCTACCTCTTTGATACTGATAATTCACCTCGAAATCACTCCACCGATGAGTAAGTAATATGTA
196 TACCTACCTCTTTGATACTGATAATTCACCTCGAAATCACTCCACCGATGAGTAAGTAATACGTA
82957963 CCTAAACATCTTAAATACATAATACTTATTTGATGGTAACTTAATGCAGATACTCAATATCAAAG
261 CCTAAACATCTTAAATACATAATACTTATTTGATGGTAACTTAATGCAGATACTCAATATCAAAG
82958028 TCTTACTTGAATCCTAGCATTTAGCCGTCGGGTCTTTAAAGCTCGGATATAGTACGAGCACGAAG
326 TCTTACTTGAATCCTAGCATTTAGCCGTCGGGTCTTTAAAGCTCGGATATAGTACGAGCACGAAG
*
82958093 CCTACGGACATTAATCAGGATAATATTCTCGCATAAAGCCTGCGAGGTTTTAACTCGGATATAGT
391 CCTACGGACATTAATCAGGATAATATTCTCGCATAAAGCCTGCGAGGTTTTAACCCGGATATAGT
82958158 ACTGACACAAATGCCCTTCGGGACTTATCACATTTATAC
456 ACTGACACAAATGCCCTTCGGGACTTATCACATTTATAC
82958197 ACTTTCACAT
Statistics
Matches: 490, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
494 490 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (494 bp):
TACGTAAGCTTACAAATCATAATCCTTACCTTGTACTGGCACATCTAGCTCAACCCAACCCATAC
TCAAATCATAAGGCTTTTGGGCAGAATACGCACTAATACATAAGAATATTTCATCGCATACTTTA
TTATACAAACATACCATTACCAATTAGATCATTCTCATATTTGGAGTTATAATATTAATCACATT
TACCTACCTCTTTGATACTGATAATTCACCTCGAAATCACTCCACCGATGAGTAAGTAATACGTA
CCTAAACATCTTAAATACATAATACTTATTTGATGGTAACTTAATGCAGATACTCAATATCAAAG
TCTTACTTGAATCCTAGCATTTAGCCGTCGGGTCTTTAAAGCTCGGATATAGTACGAGCACGAAG
CCTACGGACATTAATCAGGATAATATTCTCGCATAAAGCCTGCGAGGTTTTAACCCGGATATAGT
ACTGACACAAATGCCCTTCGGGACTTATCACATTTATAC
Found at i:82958244 original size:47 final size:47
Alignment explanation
Indices: 82958181--82958569 Score: 625
Period size: 47 Copynumber: 8.3 Consensus size: 47
82958171 CCCTTCGGGA
* *
82958181 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
82958228 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
82958275 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
82958322 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
82958369 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
82958416 CCTATCACATATATATACTTTCACATTCATCACATTGGCCACTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
82958463 CTTATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
82958510 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
82958557 CTTATCACATATA
1 CTTATCACATATA
82958570 CATATCTTGT
Statistics
Matches: 320, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 320 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:82958519 original size:22 final size:22
Alignment explanation
Indices: 82958491--82958566 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
82958481 TTTCACATTC
82958491 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
82958513 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
82958537 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82958560 ATCACAT
1 ATCACAT
82958567 ATACATATCT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82972057 original size:40 final size:40
Alignment explanation
Indices: 82972008--82972159 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
82971998 ACAACCACAA
* * *** *
82972008 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
82972048 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
82972088 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
82972128 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
82972160 CATTCAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:82986044 original size:47 final size:49
Alignment explanation
Indices: 82985970--82986099 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 49
82985960 TAACCCGCCC
*
82985970 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * *
82986018 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
*
82986063 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
82986100 TCAACCATCC
Statistics
Matches: 70, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
43 6 0.09
44 2 0.03
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:82986115 original size:46 final size:45
Alignment explanation
Indices: 82985972--82986115 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 45
82985962 ACCCGCCCTA
82985972 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
82986019 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
82986065 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
82986111 AGTGA
1 AGTGA
82986116 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 31 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:82993197 original size:19 final size:20
Alignment explanation
Indices: 82993173--82993210 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82993163 GGTACCACCA
82993173 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
82993192 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
82993211 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:82993549 original size:93 final size:93
Alignment explanation
Indices: 82993439--82993609 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82993429 GCCCCTAAGT
* *
82993439 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82993504 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82993532 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82993597 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82993610 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82993606 original size:46 final size:46
Alignment explanation
Indices: 82993434--82993606 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82993424 AACCCGCCCC
* * * *
82993434 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
82993480 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
82993528 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82993573 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82993607 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:82995082 original size:30 final size:30
Alignment explanation
Indices: 82995048--82995108 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82995038 TCCTCAACTC
*
82995048 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGACAAAATTACAATTTTGCCCCT
* * * *
82995078 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTGACAAAATTACAATTTTGCCCCT
82995108 A
1 A
82995109 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTGACAAAATTACAATTTTGCCCCT
Found at i:83004470 original size:43 final size:43
Alignment explanation
Indices: 83004422--83004506 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
83004412 TACATACTAC
83004422 ATAACTAAAATTCAAAACTTTAATTTACCGAAACAATAACCGG
1 ATAACTAAAATTCAAAACTTTAATTTACCGAAACAATAACCGG
83004465 ATAACTAAAATTCAAAACTTTAATTTACCGAAACAATAACCG
1 ATAACTAAAATTCAAAACTTTAATTTACCGAAACAATAACCG
83004507 AATAGTGTGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.49, C:0.19, G:0.06, T:0.26
Consensus pattern (43 bp):
ATAACTAAAATTCAAAACTTTAATTTACCGAAACAATAACCGG
Found at i:83008556 original size:27 final size:28
Alignment explanation
Indices: 83008526--83008624 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 28
83008516 TTTAGTTTAC
83008526 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* *
83008553 TAAAA-TACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
83008579 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
83008606 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
83008625 CCGATTTACA
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
25 2 0.03
26 26 0.41
27 33 0.52
28 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:83008782 original size:81 final size:81
Alignment explanation
Indices: 83008620--83008829 Score: 260
Period size: 81 Copynumber: 2.6 Consensus size: 81
83008610 ATTACCAAAG
* * * * *
83008620 TACCCCCGATTTACAGAATTACCGTTTTACCCCCGATTTACATAATTATCGTTTTACCCCCGATT
1 TACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCCCGATT
*
83008685 TACATAATTATCGTTT
66 TACAGAATTATCGTTT
* * * *
83008701 TGCCCTCGACTTACAGAATTACCATTTTATCCTCGATTTATAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCCCGATT
*
83008766 TATAGAATTA-CTGTTT
66 TACAGAATTATC-GTTT
* * * * *
83008782 TACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTA
1 TACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAGAATTA
83008830 CTAAAATACC
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 108 0.99
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCCCGATT
TACAGAATTATCGTTT
Found at i:83008832 original size:27 final size:27
Alignment explanation
Indices: 83008620--83008831 Score: 223
Period size: 27 Copynumber: 7.9 Consensus size: 27
83008610 ATTACCAAAG
* *
83008620 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
83008647 TACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
83008674 TACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * **
83008701 TGCCCTCGACTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
83008728 TATCCTCGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
83008755 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
83008782 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
83008809 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
83008832 AAAATACCAT
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
27 160 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:83008839 original size:27 final size:27
Alignment explanation
Indices: 83008755--83009057 Score: 150
Period size: 27 Copynumber: 11.3 Consensus size: 27
83008745 ATTATCGTTT
* * ****
83008755 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTTGATTTATAAAATTACTAAAA
* ***
83008782 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAAAATTACTAAAA
* *
83008809 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * *
83008836 TACCATTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * *
83008863 TACCCTT-AGTTTGTAAAATTTCCAAAA
1 TACCCTTGA-TTTATAAAATTACTAAAA
* * * * **
83008890 TACTCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
** * *
83008917 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* *
83008944 TACCC-TGATTTA-CAAA--ACAAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
*
83008967 TACCCTTGACTTTCTAAAAATTA-TAAAAA
1 TACCCTTGA-TTTAT-AAAATTACT-AAAA
* * * *
83008996 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * * *
83009023 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
*
83009050 CACCCTTG
1 TACCCTTG
83009058 TAGGATGAAA
Statistics
Matches: 217, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
23 11 0.05
24 3 0.01
25 6 0.03
26 4 0.02
27 177 0.82
28 4 0.02
29 12 0.06
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACTAAAA
Found at i:83008856 original size:54 final size:54
Alignment explanation
Indices: 83008735--83008857 Score: 122
Period size: 54 Copynumber: 2.3 Consensus size: 54
83008725 TTTTATCCTC
* * * * **** *
83008735 GATTTATAGAATTA-TCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTT
1 GATTTATAAAATTACT-ATTTTACCCTCGATTTACAAAATTACTAAAATACCATT
*
83008789 GATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCATT
1 GATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCATT
* *
83008843 GGTTTGTAAAATTAC
1 GATTTATAAAATTAC
83008858 CAAAATACCC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (54 bp):
GATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCATT
Found at i:83008867 original size:54 final size:53
Alignment explanation
Indices: 83008809--83008947 Score: 179
Period size: 54 Copynumber: 2.6 Consensus size: 53
83008799 ATTACTATTT
* ** *
83008809 TACCCTCGATTTACAAAATTACTAAAATACCATTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACC-TTGGTTTGTAAAATTACCAAAA
* * * * *
83008863 TACCCTTAGTTTGTAAAATTTCCAAAATACTCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATAC-CTTGGTTTGTAAAATTACCAAAA
83008917 TACCCTCAATTTGTAAAATTACCAAAATACC
1 TACCCTCAATTTGTAAAATTACCAAAATACC
83008948 CTGATTTACA
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 70 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCTTGGTTTGTAAAATTACCAAAA
Found at i:83009152 original size:27 final size:27
Alignment explanation
Indices: 83009075--83009152 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
83009065 AAATGACTAA
* *
83009075 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
83009102 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
83009129 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
83009153 GAATGTGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:83009983 original size:26 final size:26
Alignment explanation
Indices: 83009954--83010048 Score: 129
Period size: 26 Copynumber: 3.7 Consensus size: 26
83009944 GAGGAAGTGC
83009954 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAATTTATTG
* **
83009980 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAATTTATTG
*
83010006 AAAAGGGCTTATGCCCCAATTTATTA
1 AAAAGGGCTTATGCCCCAATTTATTG
**
83010032 AAAATAGCTT-TGCCCCA
1 AAAAGGGCTTATGCCCCA
83010049 GTTATTAAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
25 7 0.12
26 53 0.88
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAATTTATTG
Found at i:83010241 original size:41 final size:42
Alignment explanation
Indices: 83010196--83010286 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
83010186 TAGTCTCCCC
*
83010196 AAATGGGCTTGCA-ACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
83010237 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
83010279 AAATGGGC
1 AAATGGGC
83010287 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 13 0.28
42 34 0.72
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.38
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:83010345 original size:31 final size:31
Alignment explanation
Indices: 83010310--83010388 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
83010300 CGTTTACAAT
83010310 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
83010341 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
83010372 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
83010389 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:83015059 original size:27 final size:27
Alignment explanation
Indices: 83015020--83015089 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
83015010 CAGTATGGCA
** *
83015020 GCAAAGCTGCCAGTATTAGTATATGTG
1 GCAAAGCAACCAGTATCAGTATATGTG
* *
83015047 GCAAAGCCACCAGTAACAGTATATGTG
1 GCAAAGCAACCAGTATCAGTATATGTG
*
83015074 GCGAAGCAACCAGTAT
1 GCAAAGCAACCAGTAT
83015090 ATTACACTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.21
Consensus pattern (27 bp):
GCAAAGCAACCAGTATCAGTATATGTG
Found at i:83020297 original size:40 final size:40
Alignment explanation
Indices: 83020192--83020390 Score: 291
Period size: 40 Copynumber: 5.0 Consensus size: 40
83020182 CGGATGATAA
* *
83020192 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
83020232 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83020271 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83020311 CCGGGCTAAGTCCCTAAGGCATTTGTGCGAGTTACTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
83020350 CCGGGCT-AGTCCCGAAGACATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
83020389 CC
1 CC
83020391 AATTAAATCC
Statistics
Matches: 148, Mismatches: 7, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
37 2 0.01
38 25 0.17
39 44 0.30
40 77 0.52
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83020354 original size:79 final size:78
Alignment explanation
Indices: 83020191--83020380 Score: 285
Period size: 79 Copynumber: 2.4 Consensus size: 78
83020181 TCGGATGATA
* *
83020191 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTG
83020256 TGCGAGTTACTAT
66 TGCGAGTTACTAT
* *
83020269 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCTAAGGCAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
83020333 TTGTGCGAGTTACTAT
63 TTGTGCGAGTTACTAT
* *
83020349 ACCGGGCT-AGTCCCGAAGACATTTGAGCGAGT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83020381 AGCTATATCC
Statistics
Matches: 103, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
78 25 0.24
79 51 0.50
80 27 0.26
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (78 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTG
TGCGAGTTACTAT
Found at i:83028271 original size:40 final size:40
Alignment explanation
Indices: 83028166--83028366 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
83028156 CGGATGATAA
* *
83028166 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
83028206 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83028245 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83028285 CCGGGCTAAGTCCCTAAGGCATTTGTGCGAGTTACTATCA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
83028325 CCGGGCT-AGTCCCGAAGACATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
83028364 CCG
1 CCG
83028367 ATTAAATCCC
Statistics
Matches: 149, Mismatches: 7, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
38 3 0.02
39 62 0.42
40 83 0.56
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83028336 original size:79 final size:78
Alignment explanation
Indices: 83028165--83028355 Score: 278
Period size: 79 Copynumber: 2.4 Consensus size: 78
83028155 TCGGATGATA
* *
83028165 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTG
83028230 TGCGAGTTACTAT
66 TGCGAGTTACTAT
* *
83028243 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCTAAGGCAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
83028307 TTGTGCGAGTTACTAT
63 TTGTGCGAGTTACTAT
* *
83028323 CACCGGGCT-AGTCCCGAAGACATTTGAGCGAGT
1 -ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83028356 AGCTATATCC
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
78 3 0.03
79 66 0.64
80 33 0.32
81 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (78 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTG
TGCGAGTTACTAT
Found at i:83031924 original size:40 final size:40
Alignment explanation
Indices: 83031816--83032025 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83031806 CGGGATTTAA
* * * * *
83031816 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
83031856 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83031896 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83031936 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83031976 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83032016 CCGGATATAT
1 CCGGATATAT
83032026 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:83040055 original size:40 final size:40
Alignment explanation
Indices: 83039947--83040156 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83039937 CGGGATTTAA
* * * * *
83039947 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
83039987 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83040027 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83040067 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83040107 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83040147 CCGGATATAT
1 CCGGATATAT
83040157 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:83044555 original size:40 final size:40
Alignment explanation
Indices: 83044447--83044656 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83044437 CGGGATTTAA
* * * * *
83044447 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
83044487 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83044527 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83044567 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83044607 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83044647 CCGGATATAT
1 CCGGATATAT
83044657 TTCAATGTTC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:83046510 original size:19 final size:17
Alignment explanation
Indices: 83046468--83046510 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
83046458 GTGTGTCTCA
83046468 GGCGTGTGTGCCACACG
1 GGCGTGTGTGCCACACG
83046485 GGCGTGTGTGCCACACG
1 GGCGTGTGTGCCACACG
*
83046502 GGCATGTGT
1 GGCGTGTGT
83046511 CTTGGCCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.12, C:0.26, G:0.42, T:0.21
Consensus pattern (17 bp):
GGCGTGTGTGCCACACG
Found at i:83046810 original size:36 final size:36
Alignment explanation
Indices: 83046763--83046839 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
83046753 TTCTAATGCT
83046763 CGTATTCGGCCTTGAGGGCCCAATCAAGGGAAGTTA
1 CGTATTCGGCCTTGAGGGCCCAATCAAGGGAAGTTA
*
83046799 CGTATTGGGCCTTGAGGGCCCAATCAAGGGAAGTTA
1 CGTATTCGGCCTTGAGGGCCCAATCAAGGGAAGTTA
*
83046835 TGTAT
1 CGTAT
83046840 GATCTCAGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (36 bp):
CGTATTCGGCCTTGAGGGCCCAATCAAGGGAAGTTA
Found at i:83048036 original size:19 final size:19
Alignment explanation
Indices: 83047997--83048033 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
83047987 TAGTATAGCC
83047997 ATTTAATTTGTCTTGAGTT
1 ATTTAATTTGTCTTGAGTT
83048016 ATTTAATTTGTCTT-AGTT
1 ATTTAATTTGTCTTGAGTT
83048034 TATACAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.22, C:0.05, G:0.14, T:0.59
Consensus pattern (19 bp):
ATTTAATTTGTCTTGAGTT
Found at i:83048045 original size:27 final size:28
Alignment explanation
Indices: 83048015--83048070 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
83048005 TGTCTTGAGT
** *
83048015 TATTTAATTTGTCTT-AGTTTATACAAC
1 TATTTAAAGTGTCTTAAGTTTAGACAAC
83048042 TATTTAAAGTGTCTTAAGTTTAGACAAC
1 TATTTAAAGTGTCTTAAGTTTAGACAAC
83048070 T
1 T
83048071 TAATTGCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (28 bp):
TATTTAAAGTGTCTTAAGTTTAGACAAC
Found at i:83049964 original size:21 final size:19
Alignment explanation
Indices: 83049935--83049973 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
83049925 GTCCTAGTTT
83049935 ATTTATGTTATAATTGTTGCA
1 ATTTATGTT-TAATT-TTGCA
*
83049956 ATTTGTGTTTAATTTTGC
1 ATTTATGTTTAATTTTGC
83049974 TAAAATCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.23, C:0.05, G:0.15, T:0.56
Consensus pattern (19 bp):
ATTTATGTTTAATTTTGCA
Found at i:83053071 original size:71 final size:71
Alignment explanation
Indices: 83052985--83053145 Score: 313
Period size: 71 Copynumber: 2.3 Consensus size: 71
83052975 ATGTATCCCG
*
83052985 TGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG
1 TGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGCGAAGG
83053050 ACACCA
66 ACACCA
83053056 TGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGCGAAGG
1 TGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGCGAAGG
83053121 ACACCA
66 ACACCA
83053127 TGTAGACAAGAGAGCTACG
1 TGTAGACAAGAGAGCTACG
83053146 AGACAAATCG
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 89 1.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (71 bp):
TGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGCGAAGG
ACACCA
Found at i:83055391 original size:18 final size:18
Alignment explanation
Indices: 83055361--83055433 Score: 78
Period size: 18 Copynumber: 3.9 Consensus size: 18
83055351 AACAATCTGT
*
83055361 TGAAAAAGCAAAAGAAAA
1 TGAAAAAGAAAAAGAAAA
*
83055379 TGAACAAGAAAAA-AAGAA
1 TGAAAAAGAAAAAGAA-AA
83055397 TGAAAAAGAAAAAGAAAA
1 TGAAAAAGAAAAAGAAAA
83055415 -GAAAATCTAGAAAAAGAAA
1 TGAAAA---AGAAAAAGAAA
83055434 GGAAAAAATG
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
17 7 0.15
18 27 0.57
19 2 0.04
20 11 0.23
ACGTcount: A:0.73, C:0.04, G:0.16, T:0.07
Consensus pattern (18 bp):
TGAAAAAGAAAAAGAAAA
Found at i:83055409 original size:6 final size:6
Alignment explanation
Indices: 83055362--83055433 Score: 58
Period size: 6 Copynumber: 11.7 Consensus size: 6
83055352 ACAATCTGTT
* * * *
83055362 GAAAAA GCAAAA GAAAAT GAACAA GAAAAA -AAGAAT GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAA-AAA GAAAAA GAAAAA
83055410 G-AAAA GAAAATCTA GAAAAA GAAA
1 GAAAAA GAAAA---A GAAAAA GAAA
83055434 GGAAAAAATG
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
5 7 0.13
6 37 0.71
7 2 0.04
9 6 0.12
ACGTcount: A:0.74, C:0.04, G:0.17, T:0.06
Consensus pattern (6 bp):
GAAAAA
Found at i:83055496 original size:11 final size:12
Alignment explanation
Indices: 83055471--83055504 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
83055461 ACACGGGTGG
83055471 AAAAAGAAAAGT
1 AAAAAGAAAAGT
83055483 AAAAAGAAAA-T
1 AAAAAGAAAAGT
83055494 AAAAATGAAAA
1 AAAAA-GAAAA
83055505 AATGAGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (12 bp):
AAAAAGAAAAGT
Found at i:83056234 original size:22 final size:22
Alignment explanation
Indices: 83056209--83056252 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
83056199 TACTTTGACG
*
83056209 ATATTTTAATTTATAGTAAGTC
1 ATATTTTAATTTATAGCAAGTC
83056231 ATATTTTAATTTATAGCAAGTC
1 ATATTTTAATTTATAGCAAGTC
83056253 TTTGACTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (22 bp):
ATATTTTAATTTATAGCAAGTC
Found at i:83058249 original size:29 final size:28
Alignment explanation
Indices: 83058208--83058285 Score: 104
Period size: 29 Copynumber: 2.8 Consensus size: 28
83058198 GACTGTAAAA
*
83058208 GTGATTGGGCCTAGGGGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
*
83058236 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
*
83058265 GAGATTGGGCCTAGTGGGCCA
1 GTGATTGGGCCTAGTGGGCCA
83058286 CAAGCATGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 20 0.45
29 23 0.52
30 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.26
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:83060970 original size:40 final size:40
Alignment explanation
Indices: 83060926--83061117 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 40
83060916 GGATATAGCT
* *
83060926 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
83060966 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
83061006 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
83061045 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* * *
83061085 ACTTAGCACAAAAGCCTTCGGTACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
83061118 ATATCATTCG
Statistics
Matches: 130, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 69 0.53
41 26 0.20
42 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:83061044 original size:79 final size:78
Alignment explanation
Indices: 83060900--83061118 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
83060890 GAATCACATA
* * * * *
83060900 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATATAG
83060964 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* *
83060979 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAAT-TAG
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATATAG
83061043 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* * * *
83061058 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGTACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGG-GCTTAGCCCGGA
83061119 TATCATTCGA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 44 0.37
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATATAGTA
ACTCGCACAAATG
Found at i:83061238 original size:119 final size:119
Alignment explanation
Indices: 83061084--83061332 Score: 480
Period size: 119 Copynumber: 2.1 Consensus size: 119
83061074 CGGATATAGT
*
83061084 CACTTAGCACAAAAGCCTTCGGTACTTAGCCCGGATATCATTCGAATAACCAAGCACATATATCA
1 CACTTAGCACAAAAGCCTTCGGTACTTAGCCCGGATATCATTCGAATAACCAAGCACATACATCA
83061149 ATAAATCATGACACATCCGTATTTCATTTTCATTACCATAGCTCAAACACAAGA
66 ATAAATCATGACACATCCGTATTTCATTTTCATTACCATAGCTCAAACACAAGA
83061203 CACTTAGCACAAAAGCCTTCGGTACTTAGCCCGGATATCATTCGAATAACCAAGCACATACATCA
1 CACTTAGCACAAAAGCCTTCGGTACTTAGCCCGGATATCATTCGAATAACCAAGCACATACATCA
83061268 ATAAATCATGACACATCCGTATTTCATTTTCATTACCATAGCTCAAACACAAGA
66 ATAAATCATGACACATCCGTATTTCATTTTCATTACCATAGCTCAAACACAAGA
*
83061322 CACTTATCACA
1 CACTTAGCACA
83061333 CTTGCAATTT
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 128 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.26
Consensus pattern (119 bp):
CACTTAGCACAAAAGCCTTCGGTACTTAGCCCGGATATCATTCGAATAACCAAGCACATACATCA
ATAAATCATGACACATCCGTATTTCATTTTCATTACCATAGCTCAAACACAAGA
Found at i:83063448 original size:55 final size:55
Alignment explanation
Indices: 83063364--83063475 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
83063354 CTAAATTTGA
*
83063364 TACTTATTTTTTGTATGTTTGAGAATGTTTGCGATAGGTGGATGTTTTGGATATG
1 TACTTATTTTGTGTATGTTTGAGAATGTTTGCGATAGGTGGATGTTTTGGATATG
83063419 TACTTATTTTGTGTATGTTTGAGAATGTTTGCGATAGGTGGATGTTTTGGATATG
1 TACTTATTTTGTGTATGTTTGAGAATGTTTGCGATAGGTGGATGTTTTGGATATG
83063474 TA
1 TA
83063476 TTAAAATTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.21, C:0.04, G:0.28, T:0.48
Consensus pattern (55 bp):
TACTTATTTTGTGTATGTTTGAGAATGTTTGCGATAGGTGGATGTTTTGGATATG
Found at i:83063463 original size:27 final size:27
Alignment explanation
Indices: 83063378--83063465 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 27
83063368 TATTTTTTGT
83063378 ATGTTTGAGAATGTTTGCGATAGGTGG
1 ATGTTTGAGAATGTTTGCGATAGGTGG
** *
83063405 ATGTTTTG-GATATGTACTT---ATTTTGTGT
1 ATG-TTTGAGA-ATGT--TTGCGA-TAGGTGG
83063433 ATGTTTGAGAATGTTTGCGATAGGTGG
1 ATGTTTGAGAATGTTTGCGATAGGTGG
83063460 ATGTTT
1 ATGTTT
83063466 TGGATATGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 18
0.66 0.09 0.26
Matches are distributed among these distances:
25 2 0.04
27 24 0.52
28 18 0.39
30 2 0.04
ACGTcount: A:0.20, C:0.03, G:0.31, T:0.45
Consensus pattern (27 bp):
ATGTTTGAGAATGTTTGCGATAGGTGG
Found at i:83065805 original size:29 final size:28
Alignment explanation
Indices: 83065765--83065844 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 28
83065755 GACTGTAAAA
*
83065765 GTGATTGGGCCTAGTGGGCCATAT-AGAT
1 GTGATTGGGCCTAATGGGCCATATGA-AT
83065793 GTGATTCGGGCCTAATGGGCCATATGAAT
1 GTGATT-GGGCCTAATGGGCCATATGAAT
*
83065822 GAGATTGGGCCTAATGGGCCATA
1 GTGATTGGGCCTAATGGGCCATA
83065845 AGCATGCCTG
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
28 23 0.48
29 24 0.50
30 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATGAAT
Found at i:83067820 original size:40 final size:40
Alignment explanation
Indices: 83067715--83067961 Score: 358
Period size: 40 Copynumber: 6.2 Consensus size: 40
83067705 CGGATGATAA
* *
83067715 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
83067755 CCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
83067794 CTGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
83067834 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83067874 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
83067914 CCGGGCTAAGTCCAGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
83067954 CC-GGCTAA
1 CCGGGCTAA
83067962 ATTCTGAAGG
Statistics
Matches: 189, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 41 0.22
40 148 0.78
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83073353 original size:45 final size:45
Alignment explanation
Indices: 83073286--83073385 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 45
83073276 AGACAGAGCT
*
83073286 AGTGTAAGACATGTCTGAGACAT-GAATCGGCTACG-AGATGTGTC
1 AGTGTAAGACATGTCTGAGACATGGAATCGGC-ACGTAGAGGTGTC
* *
83073330 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGTGTC
1 AGTGTAAGA-CATGTCTGAGACATGGAATCGGCACG--TAGAGGTGTC
83073378 AGTGTAAG
1 AGTGTAAG
83073386 TGTAACACCC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
44 9 0.19
45 16 0.33
46 7 0.15
48 16 0.33
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGAGACATGGAATCGGCACGTAGAGGTGTC
Found at i:83074892 original size:40 final size:40
Alignment explanation
Indices: 83074848--83074957 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
83074838 TTCACAATTT
* *
83074848 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
83074888 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * * *
83074928 GCATAAATGTCTTTGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
83074958 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:83082629 original size:40 final size:39
Alignment explanation
Indices: 83082574--83082723 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
83082564 TATGGTAACC
* * *
83082574 GCACAAAGGCCTTCGGGACTTAACCCGGAT-T-TCACAATTT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATGTATCAC---TA
*
83082614 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATGTA-TCACTA
* * *
83082654 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATGT-ATCACTA
* * * *
83082694 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT
83082724 ATCATTCAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
40 87 0.94
41 2 0.02
43 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATGTATCACTA
Found at i:83091368 original size:40 final size:40
Alignment explanation
Indices: 83091324--83091433 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
83091314 TTCACAATTT
* *
83091324 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
83091364 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
83091404 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
83091434 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:83100081 original size:40 final size:40
Alignment explanation
Indices: 83100037--83100146 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
83100027 TTCACAATTT
* *
83100037 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
83100077 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
83100117 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
83100147 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:83106421 original size:23 final size:23
Alignment explanation
Indices: 83106395--83106442 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
83106385 GAAGCATTTT
83106395 TACTATAAGTTAGCAATCTTTAA
1 TACTATAAGTTAGCAATCTTTAA
83106418 TACTATAAGTTAGCAATCTTTAA
1 TACTATAAGTTAGCAATCTTTAA
83106441 TA
1 TA
83106443 AAAAGAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (23 bp):
TACTATAAGTTAGCAATCTTTAA
Found at i:83108436 original size:27 final size:27
Alignment explanation
Indices: 83108398--83108451 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
83108388 TGATCCAGGC
83108398 GTACTCATCTCCTCTTCCCTATCTATT
1 GTACTCATCTCCTCTTCCCTATCTATT
83108425 GTACTCATCTCCTCTTCCCTATCTATT
1 GTACTCATCTCCTCTTCCCTATCTATT
83108452 ATACAACCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.37, G:0.04, T:0.44
Consensus pattern (27 bp):
GTACTCATCTCCTCTTCCCTATCTATT
Found at i:83116997 original size:12 final size:12
Alignment explanation
Indices: 83116980--83117004 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83116970 CCAACTCCTT
83116980 TTCTCTTAGTTG
1 TTCTCTTAGTTG
83116992 TTCTCTTAGTTG
1 TTCTCTTAGTTG
83117004 T
1 T
83117005 AGCAGCCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.16, T:0.60
Consensus pattern (12 bp):
TTCTCTTAGTTG
Found at i:83127038 original size:16 final size:16
Alignment explanation
Indices: 83127017--83127079 Score: 99
Period size: 16 Copynumber: 3.9 Consensus size: 16
83127007 CATTGTGATG
*
83127017 GAATAGGGCTGTAATT
1 GAATAGAGCTGTAATT
*
83127033 GAATAGAGTTGTAATT
1 GAATAGAGCTGTAATT
*
83127049 GAATAGAGCTGTAATA
1 GAATAGAGCTGTAATT
83127065 GAATAGAGCTGTAAT
1 GAATAGAGCTGTAAT
83127080 AAGCAATTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.38, C:0.05, G:0.27, T:0.30
Consensus pattern (16 bp):
GAATAGAGCTGTAATT
Found at i:83131744 original size:32 final size:32
Alignment explanation
Indices: 83131703--83131767 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
83131693 TTGCAATTTG
*
83131703 TTTTATATTTGCCCTTGGCTTTTACATCTATC
1 TTTTATATTTGCCCTTGGCCTTTACATCTATC
*
83131735 TTTTATATTTTCCCTTGGCCTTTACATCTATC
1 TTTTATATTTGCCCTTGGCCTTTACATCTATC
83131767 T
1 T
83131768 CATCATCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (32 bp):
TTTTATATTTGCCCTTGGCCTTTACATCTATC
Found at i:83137538 original size:67 final size:66
Alignment explanation
Indices: 83137439--83137636 Score: 187
Period size: 67 Copynumber: 3.0 Consensus size: 66
83137429 ATTTTAATAG
* * *
83137439 ATTTAATATTAAATTTAATGTAATACTCATCTTA-ATATATTTTATTAAGTTAATATTAAAGTGA
1 ATTTAATATTAAATTTAATCTAATATTTATCTTAGATATATTTTATTAA-TTAATATTAAAGTGA
83137503 TT
65 TT
* * * *
83137505 ATCTTAATATTAAATTTAATTTAATGTTTATCTTATAGATAAATATT-TT-ATTAAT-TT-AA-T
1 AT-TTAATATTAAATTTAATCTAATATTTATC-T-TAGATATATTTTATTAATTAATATTAAAGT
**
83137565 -AAA
63 GATT
*
83137568 ATTTAATATTAAATTTAATCTAATATTTATCTT-GATAAATATTATATTAATTTAATATTAAAGT
1 ATTTAATATTAAATTTAATCTAATATTTATCTTAGAT--ATATTTTATTAA-TTAATATTAAAGT
83137632 GATT
63 GATT
83137636 A
1 A
83137637 AGTTTAATCA
Statistics
Matches: 104, Mismatches: 15, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
59 3 0.03
60 1 0.01
61 5 0.05
62 29 0.28
63 4 0.04
64 6 0.06
65 4 0.04
66 6 0.06
67 31 0.30
68 4 0.04
69 4 0.04
70 7 0.07
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (66 bp):
ATTTAATATTAAATTTAATCTAATATTTATCTTAGATATATTTTATTAATTAATATTAAAGTGAT
T
Found at i:83137597 original size:62 final size:59
Alignment explanation
Indices: 83137508--83137624 Score: 180
Period size: 62 Copynumber: 1.9 Consensus size: 59
83137498 AGTGATTATC
* * *
83137508 TTAATATTAAATTTAATTTAATGTTTATCTTATAGATAAATATTTTATTAATTTAATAAAAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAAAT
83137570 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
83137625 TTAAAGTGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
59 23 0.44
60 1 0.02
61 1 0.02
62 27 0.52
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAAAT
Found at i:83140951 original size:43 final size:43
Alignment explanation
Indices: 83140828--83140943 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
83140818 TATCACATAT
* *
83140828 CGATGCCATTGTCTCAGAC-TGGGTCTTACACGAAATCATAATA
1 CGATGCCAATGTCCCAGACAT-GGTCTTACACGAAATCATAATA
** ** *
83140871 CGATGCCAATGTCCTTGTGATGGTCTTACACAAAATCATAATA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAATA
*
83140914 CAATGCCAATGTCCCAGACATGGTCTTACA
1 CGATGCCAATGTCCCAGACATGGTCTTACA
83140944 TGTAATCACA
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 59 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAATA
Found at i:83144067 original size:2 final size:2
Alignment explanation
Indices: 83144060--83144093 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
83144050 TTAGTCATTA
83144060 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83144094 TGCCGAATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83145996 original size:48 final size:48
Alignment explanation
Indices: 83145925--83146229 Score: 504
Period size: 48 Copynumber: 6.3 Consensus size: 48
83145915 CAAGATAAAT
83145925 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
83145973 ATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
83146023 ATATGTAT-TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83146070 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83146118 ATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
83146166 ATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
83146216 ATATGTATTTGTGG
1 ATATGTATATGTGG
83146230 AAATATGTAT
Statistics
Matches: 241, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 18 0.07
48 153 0.63
49 29 0.12
50 41 0.17
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:83146240 original size:27 final size:27
Alignment explanation
Indices: 83146196--83146256 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
83146186 CGAATGGCTA
*
83146196 ATGTGAAATATATATATGAGATATGTAT
1 ATGTGGAA-ATATATATGAGATATGTAT
* *
83146224 TTGTGGAAATATGTATGAGATATGTAT
1 ATGTGGAAATATATATGAGATATGTAT
83146251 ATGTGG
1 ATGTGG
83146257 TAAAGCCGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 23 0.79
28 6 0.21
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (27 bp):
ATGTGGAAATATATATGAGATATGTAT
Found at i:83146255 original size:125 final size:123
Alignment explanation
Indices: 83146100--83146352 Score: 409
Period size: 125 Copynumber: 2.0 Consensus size: 123
83146090 CGAATGGCTA
*
83146100 ATGT-GAAGTATGTATGAGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 ATGTGGAAATATGTATGAGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
83146164 AGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAT
66 AGATATGTAAATGTGGCAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTAT
* * *
83146224 TTGTGGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 ATGTGGAAATATGTATGAGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
83146289 AGATATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTAT
66 AGATATGTAAATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTAT
83146347 ATGTGG
1 ATGTGG
83146353 TAAAGCCGAA
Statistics
Matches: 119, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
123 23 0.19
124 5 0.04
125 91 0.76
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (123 bp):
ATGTGGAAATATGTATGAGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
AGATATGTAAATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTAT
Found at i:83146260 original size:173 final size:171
Alignment explanation
Indices: 83146052--83146400 Score: 610
Period size: 173 Copynumber: 2.0 Consensus size: 171
83146042 CGAATGGCTA
*
83146052 ATGT-GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGTATGTATG
1 ATGTGGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
83146116 AGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGC
66 AGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGC
83146181 AAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTAT
131 AAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTAT
* *
83146224 TTGTGGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 ATGTGGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
83146289 AGATATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
66 AGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGC
* *
83146354 AAAGCCGAATGGCTAATGTGAAATATGTGTGAGATATGTAT
131 AAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTAT
83146395 ATGTGG
1 ATGTGG
83146401 TAAAGCCGAA
Statistics
Matches: 168, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
171 22 0.13
172 5 0.03
173 141 0.84
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (171 bp):
ATGTGGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
AGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGC
AAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTAT
Found at i:83146279 original size:77 final size:75
Alignment explanation
Indices: 83146152--83146297 Score: 247
Period size: 77 Copynumber: 1.9 Consensus size: 75
83146142 TGGCTAATGT
83146152 GAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATATGAGA
1 GAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGA
83146217 TATGTATTTGTG
64 TATGTATTTGTG
* * *
83146229 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA
1 GAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATGAGATA
83146294 TGTA
66 TGTA
83146298 AATGTGGTAA
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
75 17 0.26
76 2 0.03
77 47 0.71
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (75 bp):
GAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAATATATATGAGATA
TGTATTTGTG
Found at i:83146285 original size:48 final size:48
Alignment explanation
Indices: 83146229--83146484 Score: 467
Period size: 48 Copynumber: 5.3 Consensus size: 48
83146219 TGTATTTGTG
83146229 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
*
83146277 GAAATATGTATGAGATATGTAAATGTGGTAAAGCCGAATGGCTAGTGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
*
83146325 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
* *
83146373 GAAATATGTGTGAGATATGTATATGTGGTAAAGCCGAATGGCTGGTGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
83146421 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
*
83146469 GAAATATGTAGGAGAT
1 GAAATATGTATGAGAT
83146485 GTGTGTATAT
Statistics
Matches: 199, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 199 1.00
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (48 bp):
GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
Found at i:83146414 original size:221 final size:218
Alignment explanation
Indices: 83146003--83146448 Score: 739
Period size: 221 Copynumber: 2.0 Consensus size: 218
83145993 CGAATGGCTA
*
83146003 ATGTGAAATATATATATGAGATATGTATTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 ATGTGGAA-ATATATATGAGATATGTATTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
83146068 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGTATGTATGAGATATGTAAATGTGGT
65 AGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAAATGTGGT
83146133 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAAT
130 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAAT
83146198 GTGAAATATATATATGAGATATGTAT
195 GTG-AA-ATATATATGAGATATGTAT
* * *
83146224 TTGTGGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 ATGTGGAAATATATATGAGATATGTAT-TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
83146289 AGATATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
65 AGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAAATGTGGT
* * **
83146354 AAAGCCGAATGGCTAATGTGAAATATGTGTGAGATATGTATATGTGGTAAAGCCGAATGGCTGGT
130 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAAT
*
83146419 GTGAAATATGTATGAGATATGTAT
195 GTGAAATATATATGAGATATGTAT
83146443 ATGTGG
1 ATGTGG
83146449 TAAAGCCGAA
Statistics
Matches: 210, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
219 23 0.11
220 20 0.10
221 167 0.80
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.32
Consensus pattern (218 bp):
ATGTGGAAATATATATGAGATATGTATTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
GATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAAATGTGGTA
AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATG
TGAAATATATATGAGATATGTAT
Found at i:83146732 original size:37 final size:37
Alignment explanation
Indices: 83146625--83146732 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
83146615 GAAATATATT
* * *
83146625 CCGGGTAAGACCCGACGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGC
*
83146662 CCGGGTAAGACCCGATGACTACATGTGGAGATTTTGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGC
* *
83146699 CCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTT
83146733 CATCTGAGCT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGC
Found at i:83149256 original size:71 final size:71
Alignment explanation
Indices: 83149170--83149333 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83149160 CGATTTGTCT
83149170 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83149235 CTTTCA
66 CTTTCA
83149241 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83149306 CTTTCA
66 CTTTCA
83149312 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
83149334 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:83149371 original size:71 final size:70
Alignment explanation
Indices: 83149170--83149367 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
83149160 CGATTTGTCT
* * * *
83149170 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
83149235 CTTTCA
65 CTTTCA
* * * *
83149241 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
83149306 CTTTCA
65 CTTTCA
* *
83149312 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
83149368 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:83156301 original size:71 final size:71
Alignment explanation
Indices: 83156217--83156380 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83156207 CGATTTGTCT
83156217 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83156282 CTTTCA
66 CTTTCA
83156288 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83156353 CTTTCA
66 CTTTCA
83156359 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
83156381 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:83156418 original size:71 final size:70
Alignment explanation
Indices: 83156217--83156414 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
83156207 CGATTTGTCT
* * * *
83156217 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
83156282 CTTTCA
65 CTTTCA
* * * *
83156288 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
83156353 CTTTCA
65 CTTTCA
* *
83156359 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
83156415 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:83161356 original size:40 final size:40
Alignment explanation
Indices: 83161311--83161477 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
83161301 CGGAATATAA
83161311 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
83161351 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
83161391 CCGGATATAGCCTCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
83161431 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
83161470 CCGGATAT
1 CCGGATAT
83161478 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83161461 original size:80 final size:79
Alignment explanation
Indices: 83161327--83161477 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
83161317 ATAATCACGT
*
83161327 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
83161392 CGGATATAGCCTCTA
65 CGGATATAGCCTCTA
* * ** * *
83161407 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
83161470 CCGGATAT
64 CCGGATAT
83161478 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCTCTA
Found at i:83163770 original size:40 final size:40
Alignment explanation
Indices: 83163711--83163880 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
83163701 CGGGACTTTA
* * *
83163711 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
83163751 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
83163791 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * *
83163831 CCCGGATATAA-TA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
83163872 CCCGGATAT
1 CCCGGATAT
83163881 CATTCAATTT
Statistics
Matches: 108, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
38 3 0.03
39 4 0.04
40 79 0.73
41 22 0.20
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:83171901 original size:39 final size:40
Alignment explanation
Indices: 83171723--83171905 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
83171713 CCGCACCAAG
* * * * * * * *
83171723 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
83171763 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
83171803 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
83171843 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
83171882 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
83171906 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:83176415 original size:28 final size:28
Alignment explanation
Indices: 83176362--83176421 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
83176352 AAGTAGTTGG
* *
83176362 GCCTGATGGGCCATATGAATGTGATTGA
1 GCCTGATGGGCCATATGAACGAGATTGA
* * *
83176390 GCCTGATGGGCCATGTTAACGAGATTGG
1 GCCTGATGGGCCATATGAACGAGATTGA
83176418 GCCT
1 GCCT
83176422 AAAGGGGCCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (28 bp):
GCCTGATGGGCCATATGAACGAGATTGA
Found at i:83176765 original size:27 final size:27
Alignment explanation
Indices: 83176735--83177072 Score: 287
Period size: 27 Copynumber: 12.6 Consensus size: 27
83176725 ATAATAAAGA
* * *
83176735 AAAATTACCAAAATACCCCCGGTTTGT
1 AAAATTATCGAAATACCCCCGATTTGT
* * *
83176762 AAAATTATC-AAAGTACCACCGGTTTTT
1 AAAATTATCGAAA-TACCCCCGATTTGT
* *
83176789 AAAATTA-CGGAAGTA-CCTCGATTTGT
1 AAAATTATC-GAAATACCCCCGATTTGT
* *
83176815 AAAATTATCGAAATACCCCCAATTTCT
1 AAAATTATCGAAATACCCCCGATTTGT
* *
83176842 AAAATTACCGAAATACCCCTGA-TTGT
1 AAAATTATCGAAATACCCCCGATTTGT
* *
83176868 GAAAA-TATTGAAATACCCTCGATTTGT
1 -AAAATTATCGAAATACCCCCGATTTGT
* * * * **
83176895 GAAATTACCGAAACACTCATGATTTGT
1 AAAATTATCGAAATACCCCCGATTTGT
* * * *
83176922 AAAATTAACAAAACACCCTCGATTTGT
1 AAAATTATCGAAATACCCCCGATTTGT
* * *
83176949 AAAATT-TCGAAACACCCTCAATTTGT
1 AAAATTATCGAAATACCCCCGATTTGT
*
83176975 AAAATTATCGAAATACCCTCGATTTGT
1 AAAATTATCGAAATACCCCCGATTTGT
*
83177002 AAAATTA-CTGAAACACCCCCGATTTGT
1 AAAATTATC-GAAATACCCCCGATTTGT
** *
83177029 AAAATTATCGAAATACCCTTGTAGTT-T
1 AAAATTATCGAAATACCCCCG-ATTTGT
83177056 AAAATTATCGAAATACC
1 AAAATTATCGAAATACC
83177073 ATTATAGTGT
Statistics
Matches: 255, Mismatches: 44, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
26 66 0.26
27 183 0.72
28 6 0.02
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AAAATTATCGAAATACCCCCGATTTGT
Found at i:83176817 original size:53 final size:53
Alignment explanation
Indices: 83176735--83177045 Score: 215
Period size: 53 Copynumber: 5.8 Consensus size: 53
83176725 ATAATAAAGA
* * * ** *
83176735 AAAATTACCAAAATACCCCCGGTTTGTAAAATTATC-AAAGTACCACCGGTTTTT
1 AAAATTACCGAAATA-CCTCGATTTGTAAAATTATCGAAA-TACCACCAATTTCT
* * *
83176789 AAAATTACGGAAGTACCTCGATTTGTAAAATTATCGAAATACCCCCAATTTCT
1 AAAATTACCGAAATACCTCGATTTGTAAAATTATCGAAATACCACCAATTTCT
* * * *
83176842 AAAATTACCGAAATACCCCTGA-TTGTGAAAA-TATTGAAATACC-CTCGATTTGT
1 AAAATTACCGAAATACCTC-GATTTGT-AAAATTATCGAAATACCAC-CAATTTCT
* * * * * * *
83176895 GAAATTACCGAAACA-CTCATGATTTGTAAAATTAACAAAACACC-CTCGATTTGT
1 AAAATTACCGAAATACCTC--GATTTGTAAAATTATCGAAATACCAC-CAATTTCT
* * * * *
83176949 AAAATT-TCGAAACACCCTCAATTTGTAAAATTATCGAAATACC-CTCGATTTGT
1 AAAATTACCGAAATA-CCTCGATTTGTAAAATTATCGAAATACCAC-CAATTTCT
* * *
83177002 AAAATTACTGAAACACCCCCGATTTGTAAAATTATCGAAATACC
1 AAAATTACCGAAATA-CCTCGATTTGTAAAATTATCGAAATACC
83177046 CTTGTAGTTT
Statistics
Matches: 215, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
52 3 0.01
53 128 0.60
54 81 0.38
55 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (53 bp):
AAAATTACCGAAATACCTCGATTTGTAAAATTATCGAAATACCACCAATTTCT
Found at i:83176873 original size:80 final size:79
Alignment explanation
Indices: 83176735--83177072 Score: 285
Period size: 80 Copynumber: 4.2 Consensus size: 79
83176725 ATAATAAAGA
* * * * * * *
83176735 AAAATTACCAAAATACCCCCGGTTTGTAAAATTATC-AAAGTACCACC-GGTTTTTAAAATTACG
1 AAAATTATCGAAATACCCACGATTTGTAAAATTACCGAAA--ACC-CCTGATTTGTAAAATTAC-
*
83176798 GAAGTA-CCTCGATTTGT
62 GAAATACCCTCGATTTGT
* * * *
83176815 AAAATTATCGAAATACCCCCAATTTCTAAAATTACCGAAATACCCCTGA-TTGTGAAAA-TATTG
1 AAAATTATCGAAATACCCACGATTTGTAAAATTACCGAAA-ACCCCTGATTTGT-AAAATTA-CG
83176878 AAATACCCTCGATTTGT
63 AAATACCCTCGATTTGT
* * * * * * *
83176895 GAAATTACCGAAACACTCATGATTTGTAAAATTAAC-AAAACACCCTCGATTTGTAAAATTTCGA
1 AAAATTATCGAAATACCCACGATTTGTAAAATTACCGAAAAC-CCCT-GATTTGTAAAATTACGA
* *
83176959 AACACCCTCAATTTGT
64 AATACCCTCGATTTGT
* * *
83176975 AAAATTATCGAAATACCCTCGATTTGTAAAATTACTGAAACACCCCCGATTTGTAAAATTATCGA
1 AAAATTATCGAAATACCCACGATTTGTAAAATTACCGAAA-ACCCCTGATTTGTAAAATTA-CGA
* *
83177040 AATACCCTTGTAGTT-T
64 AATACCCTCG-ATTTGT
83177056 AAAATTATCGAAATACC
1 AAAATTATCGAAATACC
83177073 ATTATAGTGT
Statistics
Matches: 208, Mismatches: 37, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
78 2 0.01
79 19 0.09
80 140 0.67
81 42 0.20
82 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (79 bp):
AAAATTATCGAAATACCCACGATTTGTAAAATTACCGAAAACCCCTGATTTGTAAAATTACGAAA
TACCCTCGATTTGT
Found at i:83177080 original size:27 final size:27
Alignment explanation
Indices: 83177026--83177087 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
83177016 ACCCCCGATT
* *
83177026 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCATTATAG
*
83177053 TTTAAAATTATCGAAATACCATTATAG
1 TGTAAAATTATCGAAATACCATTATAG
83177080 TGTAAAAT
1 TGTAAAAT
83177088 GACCAACATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.35
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCATTATAG
Found at i:83181215 original size:96 final size:97
Alignment explanation
Indices: 83181022--83181256 Score: 301
Period size: 96 Copynumber: 2.4 Consensus size: 97
83181012 GTAAGATGCT
* * **
83181022 GATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATATATCGGTCCCAATGCCATGCTCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATA-CAATCCCAATGCCATGCTCCAA
* *
83181087 ACATGGTCTTACTCTAGCCCACATGTCGAGGCC
65 ACATGGTCTTACACTAGCCCACATATCGAGGCC
* * * * *
83181120 GATGCCATGTCCCAAATATGGTCTTACACTAGCTCTCATATA-AATGCCGATGCCATGTTTCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATACAATCCCAATGCCATGCTCCAAA
* *
83181184 CATGGTCTTACACTGGCTCACATATCGAGGCC
66 CATGGTCTTACACTAGCCCACATATCGAGGCC
* * * *
83181216 GATGTCATATCCCAGACATGGTCTTACACTAGCTCTTATAT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
83181257 CCCTAATATC
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
96 80 0.67
98 39 0.33
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (97 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATACAATCCCAATGCCATGCTCCAAA
CATGGTCTTACACTAGCCCACATATCGAGGCC
Found at i:83181257 original size:48 final size:48
Alignment explanation
Indices: 83181022--83181250 Score: 237
Period size: 48 Copynumber: 4.7 Consensus size: 48
83181012 GTAAGATGCT
* * * *
83181022 GATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATATATCG-GTCCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAG--CTCACATATCGAG-GCC
* * * *
83181072 AATGCCATG-CTCCAAACATGGTCTTACTCTAGCCCACATGTCGAGGCC
1 GATGCCATGTC-CCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * ** *
83181120 GATGCCATGTCCCAAATATGGTCTTACACTAGCTCTCATATAAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
** *
83181168 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * *
83181216 GATGTCATATCCCAGACATGGTCTTACACTAGCTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTC
83181251 TTATATCCCT
Statistics
Matches: 145, Mismatches: 31, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
48 116 0.80
49 3 0.02
50 26 0.18
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
Found at i:83183457 original size:27 final size:28
Alignment explanation
Indices: 83183392--83183461 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
83183382 AAATTTGTAC
83183392 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
83183420 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
83183447 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83183462 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:83183472 original size:27 final size:27
Alignment explanation
Indices: 83183392--83183473 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
83183382 AAATTTGTAC
* *
83183392 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
83183420 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
83183447 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
83183474 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:83191362 original size:27 final size:28
Alignment explanation
Indices: 83191297--83191366 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
83191287 AAATTTGTAC
83191297 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
83191325 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
83191352 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83191367 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:83191377 original size:27 final size:27
Alignment explanation
Indices: 83191297--83191378 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
83191287 AAATTTGTAC
* *
83191297 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
83191325 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
83191352 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
83191379 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:83193527 original size:43 final size:42
Alignment explanation
Indices: 83193461--83193582 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 42
83193451 TTACATATCA
* * *
83193461 ATGCCACTGTTCTAGACAAGGTCTTACATGAAATCATAATAC
1 ATGCCAATGTCCTAGACATGGTCTTACATGAAATCATAATAC
* *
83193503 GATGCCAATGTCCTTGACATGGTCTTACACGAAATCATAATAC
1 -ATGCCAATGTCCTAGACATGGTCTTACATGAAATCATAATAC
* *
83193546 ACTGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 A-TGCCAATGTCCTAGACATGGTCTTACATGAAATCA
83193583 CATCTCGATA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 1 0.01
43 68 0.99
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACATGGTCTTACATGAAATCATAATAC
Found at i:83200982 original size:5 final size:5
Alignment explanation
Indices: 83200972--83200998 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
83200962 CAAACTAATC
83200972 ATATT ATATT ATATT ATATT ATATT AT
1 ATATT ATATT ATATT ATATT ATATT AT
83200999 GACACATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATATT
Found at i:83202908 original size:15 final size:16
Alignment explanation
Indices: 83202890--83202919 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
83202880 TCTTTTTCTT
83202890 TTCTTTTT-TTTTTAC
1 TTCTTTTTATTTTTAC
83202905 TTCTTTTTATTTTTA
1 TTCTTTTTATTTTTA
83202920 TTTTCCCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (16 bp):
TTCTTTTTATTTTTAC
Found at i:83202917 original size:20 final size:21
Alignment explanation
Indices: 83202885--83202923 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
83202875 GTAACTCTTT
83202885 TTCTTTTCTTTTTT-TTTTAC
1 TTCTTTTCTTTTTTATTTTAC
83202905 TTCTTTT-TATTTTTATTTT
1 TTCTTTTCT-TTTTTATTTT
83202924 CCCTACCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 1 0.06
20 12 0.71
21 4 0.24
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (21 bp):
TTCTTTTCTTTTTTATTTTAC
Found at i:83204368 original size:21 final size:21
Alignment explanation
Indices: 83204338--83204391 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
83204328 ACCGAGAACC
83204338 TTAG-AAATTTTTGGAAAAAT
1 TTAGAAAATTTTTGGAAAAAT
83204358 TTAGAAAATTTTTGGAAAAAT
1 TTAGAAAATTTTTGGAAAAAT
83204379 TTAGAAAATTTTT
1 TTAGAAAATTTTT
83204392 CCATGACACA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 4 0.12
21 29 0.88
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.43
Consensus pattern (21 bp):
TTAGAAAATTTTTGGAAAAAT
Found at i:83210358 original size:23 final size:22
Alignment explanation
Indices: 83210332--83210413 Score: 67
Period size: 24 Copynumber: 3.5 Consensus size: 22
83210322 CACAACCTAT
83210332 CGGGACGCTCCGAAGAGCTATAA
1 CGGGACGCT-CGAAGAGCTATAA
*
83210355 CGGGAAC-CTCGCAAGAACCATATAA
1 CGGG-ACGCTCG-AAG-AGC-TATAA
* *
83210380 CGGGAAGCTCGAGAGGGCTAATAA
1 CGGGACGCTCGA-AGAGCT-ATAA
83210404 CGGGACGCTC
1 CGGGACGCTC
83210414 TTTCAAGCTG
Statistics
Matches: 47, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
22 2 0.04
23 10 0.21
24 20 0.43
25 15 0.32
ACGTcount: A:0.32, C:0.26, G:0.30, T:0.12
Consensus pattern (22 bp):
CGGGACGCTCGAAGAGCTATAA
Found at i:83212962 original size:35 final size:35
Alignment explanation
Indices: 83212916--83212989 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
83212906 AAACACATAG
83212916 ACCATATTAACAACAACTCCTATACATGCCTTATA
1 ACCATATTAACAACAACTCCTATACATGCCTTATA
*
83212951 ACCATATTAACAACAACTCCTATAGATGCCTTATA
1 ACCATATTAACAACAACTCCTATACATGCCTTATA
83212986 ACCA
1 ACCA
83212990 AATACATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.41, C:0.28, G:0.04, T:0.27
Consensus pattern (35 bp):
ACCATATTAACAACAACTCCTATACATGCCTTATA
Found at i:83215004 original size:37 final size:37
Alignment explanation
Indices: 83214954--83215044 Score: 173
Period size: 37 Copynumber: 2.4 Consensus size: 37
83214944 TTATTACGAA
83214954 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83214991 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83215028 GTCTTACCCGGAACATA
1 GTCTTACCCGG-ACATA
83215045 TTTCCAAGTT
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 48 0.91
38 5 0.09
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:83215239 original size:95 final size:95
Alignment explanation
Indices: 83215083--83215281 Score: 355
Period size: 95 Copynumber: 2.1 Consensus size: 95
83215073 ATGTTACAAC
83215083 ATTCACATTAGCCATTCGGCTTTACCACACATACTATCACACATATATTTCACATTAGCCATTCG
1 ATTCACATTAGCCATTCGGCTTTACCACACATACTATCACACATATATTTCACATTAGCCATTCG
83215148 GCTTTACCACATATACATATCACACATAT-
66 GCTTTACCACATATACATATCACACATATG
* *
83215177 ATTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTC
1 ATTCACATTAGCCATTCGGCTTTACCACACATAC-TATCACACATATATTTCACATTAGCCATTC
83215242 GGCTTTACCACATATACATATCACACATATG
65 GGCTTTACCACATATACATATCACACATATG
*
83215273 TTTCACATT
1 ATTCACATT
83215282 CATCACATCG
Statistics
Matches: 100, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
94 32 0.32
95 60 0.60
96 8 0.08
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (95 bp):
ATTCACATTAGCCATTCGGCTTTACCACACATACTATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATG
Found at i:83215249 original size:48 final size:48
Alignment explanation
Indices: 83215084--83215281 Score: 355
Period size: 47 Copynumber: 4.2 Consensus size: 48
83215074 TGTTACAACA
*
83215084 TTCACATTAGCCATTCGGCTTTACCACACATAC-TATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
83215131 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA-
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
83215178 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
83215226 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
83215274 TTCACATT
1 TTCACATT
83215282 CATCACATCG
Statistics
Matches: 145, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
47 78 0.54
48 67 0.46
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:83215327 original size:18 final size:18
Alignment explanation
Indices: 83215296--83215331 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
83215286 ACATCGCCAT
*
83215296 TAGGCCTTATCACATATA
1 TAGGCCTTACCACATATA
*
83215314 TAGGCTTTACCACATATA
1 TAGGCCTTACCACATATA
83215332 CATATCACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TAGGCCTTACCACATATA
Found at i:83215345 original size:122 final size:123
Alignment explanation
Indices: 83215194--83215438 Score: 465
Period size: 122 Copynumber: 2.0 Consensus size: 123
83215184 TTAGCCCTTC
83215194 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
*
83215259 ATATCACACATATGTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATA
66 ATATCACACATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
83215316 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
83215381 ATATCACACATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
83215439 TACCTTCACA
Statistics
Matches: 120, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
122 95 0.79
123 25 0.21
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.33
Consensus pattern (123 bp):
GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:83215467 original size:170 final size:167
Alignment explanation
Indices: 83215147--83215485 Score: 488
Period size: 170 Copynumber: 2.0 Consensus size: 167
83215137 TTAGCCATTC
*
83215147 GGCTTTACCACATATACATATCACACATATATTCACATTAGCCCTTCGGCTTTACCACATATACA
1 GGCTTTACCACATATACATATCACACATATATTCACATTAGCCATTCGGCTTTACCACATATACA
* **
83215212 TATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTTC
66 TATCACACATATATTTCACATTAGCCATTCGGCATTACCACATATACATAT--CACATATCCTTC
83215277 ACATTCATCACATCGCCATTAGGCCTTATCACATATATA
129 ACATTCATCACATCGCCATTAGGCCTTATCACATATATA
*
83215316 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATAT-ATTCACATTAGCCATTCGGCTTTACCACATATAC
* * * *
83215381 ATATCACACATATATTTCACATTCATCACA-TCGGCCATTAGGC-CTTATCACATAT-ATATA-C
65 ATATCACACATATATTTCACATT-AGC-CATTCGG-CATTA-CCACATAT-ACATATCACATATC
83215442 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
125 CTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATA
83215486 CTCTTTCACA
Statistics
Matches: 154, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
169 47 0.31
170 84 0.55
171 6 0.04
172 10 0.06
173 7 0.05
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (167 bp):
GGCTTTACCACATATACATATCACACATATATTCACATTAGCCATTCGGCTTTACCACATATACA
TATCACACATATATTTCACATTAGCCATTCGGCATTACCACATATACATATCACATATCCTTCAC
ATTCATCACATCGCCATTAGGCCTTATCACATATATA
Found at i:83215651 original size:51 final size:49
Alignment explanation
Indices: 83215395--83215681 Score: 474
Period size: 49 Copynumber: 5.9 Consensus size: 49
83215385 CACACATATA
*
83215395 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC-C
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* *
83215443 -TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* *
83215489 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTGTATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
83215538 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
83215587 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACAC
*
83215638 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
83215682 CATCTCATAC
Statistics
Matches: 226, Mismatches: 7, Indels: 11
0.93 0.03 0.05
Matches are distributed among these distances:
45 8 0.04
46 1 0.00
47 71 0.31
49 98 0.43
51 48 0.21
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:83215700 original size:51 final size:48
Alignment explanation
Indices: 83215396--83215683 Score: 415
Period size: 47 Copynumber: 5.9 Consensus size: 48
83215386 ACACATATAT
* *
83215396 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC-C
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTC
* *
83215443 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCT-
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTC
*
83215490 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTGTATACACT-
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACA--TATATACACTC
83215539 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACT-
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTC
83215588 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACACT-
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCAC----ATATATACACTC
*
83215639 TTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATACA
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
83215684 TCTCATACAT
Statistics
Matches: 227, Mismatches: 7, Indels: 14
0.92 0.03 0.06
Matches are distributed among these distances:
47 89 0.39
49 89 0.39
51 49 0.22
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (48 bp):
TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTC
Found at i:83219498 original size:40 final size:40
Alignment explanation
Indices: 83219444--83219717 Score: 385
Period size: 40 Copynumber: 6.9 Consensus size: 40
83219434 CGAATACACG
* *
83219444 TCACCAGCATGAATGCTCTTC-GAACCTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAA-CTTAGTCCGGATACA
83219484 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
*
83219524 TCACTAGCACGAATGCTCTTCGGAATTTAG-CCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
83219563 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
* *
83219603 TCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATAACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT-ACA
* * *
83219644 TCACTAGCACGAATGCTCTTCGG-ATTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
** * *
83219683 TTCACTAGCATAAATGC-CTTCGGGACTTAGCCCGG
1 -TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
83219718 GTATCATTCA
Statistics
Matches: 219, Mismatches: 10, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
39 46 0.21
40 144 0.66
41 29 0.13
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
Found at i:83219565 original size:79 final size:80
Alignment explanation
Indices: 83219444--83219717 Score: 394
Period size: 79 Copynumber: 3.4 Consensus size: 80
83219434 CGAATACACG
* * *
83219444 TCACCAGCATGAATGCTCTTC-GAACCTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGA
1 TCACTAGCACGAATGCTCTTCGGAA-CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGA
83219508 ACTTAGTCCGGATACA
65 ACTTAGTCCGGATACA
*
83219524 TCACTAGCACGAATGCTCTTCGGAATTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
83219588 CTTAGTCCGGATACA
66 CTTAGTCCGGATACA
*
83219603 TCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATAACATCACTAGCACGAATGCTCTTCGG-
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT-ACATCACTAGCACGAATGCTCTTCGGA
* * *
83219667 ATTTAGCCCGGATATA
65 ACTTAGTCCGGATACA
** *
83219683 TTCACTAGCATAAATGC-CTTCGGGACTTAGCCCGG
1 -TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGG
83219718 GTATCATTCA
Statistics
Matches: 180, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
79 79 0.44
80 58 0.32
81 43 0.24
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
CTTAGTCCGGATACA
Found at i:83219601 original size:119 final size:121
Alignment explanation
Indices: 83219444--83219717 Score: 423
Period size: 119 Copynumber: 2.3 Consensus size: 121
83219434 CGAATACACG
*
83219444 TCACCAGCATGAATGCTCTTC-GAACCTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGA
1 TCACTAGCATGAATGCTCTTCGGAA-CTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGA
*
83219508 ACTTAGTCCGGAT-ACATCACTAGCACGAATGCTCTTCGGAATTTAG-CCGGATACA-
65 ACTTAGCCCGGATAACATCACTAGCACGAATGCTCTTCGG-ATTTAGCCCGGATACAT
*
83219563 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAA
* *
83219628 TTTAGCCCGGATAACATCACTAGCACGAATGCTCTTCGGATTTAGCCCGGATATAT
66 CTTAGCCCGGATAACATCACTAGCACGAATGCTCTTCGGATTTAGCCCGGATACAT
* * *
83219684 TCACTAGCATAAATGC-CTTCGGGACTTAGCCCGG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGG
83219718 GTATCATTCA
Statistics
Matches: 142, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
119 75 0.53
120 53 0.37
121 14 0.10
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (121 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAA
CTTAGCCCGGATAACATCACTAGCACGAATGCTCTTCGGATTTAGCCCGGATACAT
Done.