Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 268 of 438
Found at i:83221693 original size:36 final size:37
Alignment explanation
Indices: 83221625--83221751 Score: 238
Period size: 37 Copynumber: 3.4 Consensus size: 37
83221615 TTATTACGAA
83221625 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83221662 GTCTTACCCGGACATAATCT-CACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83221698 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83221735 GTCTTACCCGGAACATA
1 GTCTTACCCGG-ACATA
83221752 TTTCCAAGTT
Statistics
Matches: 88, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
36 36 0.41
37 47 0.53
38 5 0.06
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:83221849 original size:48 final size:48
Alignment explanation
Indices: 83221791--83221990 Score: 373
Period size: 48 Copynumber: 4.2 Consensus size: 48
83221781 TGTTACAACA
*
83221791 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
83221839 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
83221887 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
83221935 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
83221983 TTCACATT
1 TTCACATT
83221991 CATCACCTCG
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:83222037 original size:18 final size:18
Alignment explanation
Indices: 83222006--83222041 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
83221996 CCTCGGCCAT
*
83222006 TAGGCCTTATCACATATA
1 TAGGCCTTACCACATATA
*
83222024 TAGGCTTTACCACATATA
1 TAGGCCTTACCACATATA
83222042 CATATCACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TAGGCCTTACCACATATA
Found at i:83222046 original size:123 final size:123
Alignment explanation
Indices: 83221903--83222148 Score: 465
Period size: 123 Copynumber: 2.0 Consensus size: 123
83221893 TTAGCCCTTC
83221903 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
* *
83221968 ATATCACACATATGTTTCACATTCATCACCTCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
83222026 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
83222091 ATATCACACATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
83222149 TACACCTTCA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 120 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (123 bp):
GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:83222120 original size:57 final size:57
Alignment explanation
Indices: 83221936--83222195 Score: 187
Period size: 57 Copynumber: 4.5 Consensus size: 57
83221926 CACATATATT
* * * *
83221936 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATATTTCACATTCA
* * * * * *
83221993 TCACCTCGGCCATTAGGCCTTATCACATATATAGGCT-TTACCACATATACATATCACACATATG
1 TCACATCAGCCATTAGGCCTTACCACATATACA---TATCA-CACATAT--AT-T-TCACAT-T-
**
83222057 TT
56 CA
* * *
83222059 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATATTTCACATTCA
* * *
83222116 TCACATCGGCCATTAGGCCTTATCACATAT--ATAT-ACAC-----CTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATATTTCACATTCA
* *
83222165 TCACATCGGCCATTAGGCCTTATCACATATA
1 TCACATCAGCCATTAGGCCTTACCACATATA
83222196 TACTCTTTCA
Statistics
Matches: 162, Mismatches: 29, Indels: 31
0.73 0.13 0.14
Matches are distributed among these distances:
49 40 0.25
54 4 0.02
55 4 0.02
57 51 0.31
58 1 0.01
59 7 0.04
60 9 0.06
61 2 0.01
62 1 0.01
63 9 0.06
64 7 0.04
65 1 0.01
66 26 0.16
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.32
Consensus pattern (57 bp):
TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATATTTCACATTCA
Found at i:83222162 original size:49 final size:49
Alignment explanation
Indices: 83222105--83222391 Score: 506
Period size: 49 Copynumber: 5.9 Consensus size: 49
83222095 CACACATATA
*
83222105 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
83222154 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
83222201 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
83222250 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
83222299 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
83222348 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
83222392 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 44 0.19
49 184 0.81
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:83240192 original size:28 final size:28
Alignment explanation
Indices: 83240161--83240268 Score: 128
Period size: 28 Copynumber: 3.9 Consensus size: 28
83240151 GCCGTTGATT
** * *
83240161 ACTCAATGCCTCGCACACTAAGTGTCAT
1 ACTCAATATCTCGCACACTAAGTGCCAC
*
83240189 ACTCGAA-ATCTCGCACACAAAGTGCCAC
1 ACTC-AATATCTCGCACACTAAGTGCCAC
* *
83240217 ACTCGATATCTTGCACACTAAGTGCCAC
1 ACTCAATATCTCGCACACTAAGTGCCAC
*
83240245 ACTCGATATCTCGCACACTAAGTG
1 ACTCAATATCTCGCACACTAAGTG
83240269 TCGTACACAG
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.01
28 66 0.96
29 2 0.03
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22
Consensus pattern (28 bp):
ACTCAATATCTCGCACACTAAGTGCCAC
Found at i:83240300 original size:40 final size:40
Alignment explanation
Indices: 83240255--83240351 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
83240245 ACTCGATATC
* *
83240255 TCGCACACTAAGTGTCGTACACAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACACAGCCGAAGCTATCTCAAA
* * * *
83240295 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATACACAGCCGAAGCTATCTCAAA
*
83240335 TCGTACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
83240352 CAAATAACTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.22
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACACAGCCGAAGCTATCTCAAA
Found at i:83242514 original size:17 final size:17
Alignment explanation
Indices: 83242492--83242524 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
83242482 ATCTGACAAA
*
83242492 GCCCGATCAATGATAAT
1 GCCCGATAAATGATAAT
83242509 GCCCGATAAATGATAA
1 GCCCGATAAATGATAA
83242525 ATGATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:83250597 original size:27 final size:27
Alignment explanation
Indices: 83250495--83250598 Score: 75
Period size: 27 Copynumber: 3.9 Consensus size: 27
83250485 AATACTTTAG
* *
83250495 TTTACCAAATTATTGAAATACCCTCGA
1 TTTACAAAATTATCGAAATACCCTCGA
* ** * *
83250522 CTTGTAAAATTA-CCAAAGTACCCCCGA
1 TTTACAAAATTATCGAAA-TACCCTCGA
* *** *
83250549 TTTACAAAATTACCGTTTTACCATCGA
1 TTTACAAAATTATCGAAATACCCTCGA
*
83250576 TTTACAAAATTATTGAAATACCC
1 TTTACAAAATTATCGAAATACCC
83250599 CTGTAGGGTA
Statistics
Matches: 53, Mismatches: 22, Indels: 4
0.67 0.28 0.05
Matches are distributed among these distances:
26 3 0.06
27 49 0.92
28 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTATCGAAATACCCTCGA
Found at i:83250619 original size:27 final size:27
Alignment explanation
Indices: 83250591--83250695 Score: 138
Period size: 27 Copynumber: 3.9 Consensus size: 27
83250581 AAAATTATTG
* *
83250591 AAATACCCCTGTAGGGTAGAGTTACTG
1 AAATACCCCTGTAGGGTAGAATTACTA
* *
83250618 AAATACCCCTATAGGGTAGAATTATTA
1 AAATACCCCTGTAGGGTAGAATTACTA
* * *
83250645 AAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAATTACTA
*
83250672 AAATACCCCTGTAGGGTAGGATTA
1 AAATACCCCTGTAGGGTAGAATTA
83250696 TCGAGATACC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTA
Found at i:83250704 original size:27 final size:27
Alignment explanation
Indices: 83250583--83250705 Score: 131
Period size: 27 Copynumber: 4.6 Consensus size: 27
83250573 CGATTTACAA
*
83250583 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
83250610 AGTTA-CTGAAATACCCCTATAGGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
** *
83250637 AATTATTAAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
83250664 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
83250691 GATTATCGAGATACC
1 AATTATCGAAATACC
83250706 TTTGTGGGGT
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:83250705 original size:54 final size:54
Alignment explanation
Indices: 83250583--83250716 Score: 160
Period size: 54 Copynumber: 2.5 Consensus size: 54
83250573 CGATTTACAA
* ** **
83250583 AATTATTGAAATACCCCTGTAGGGTAGAGTTACTGAAATACCCCTATAGGGTAG
1 AATTATTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAG
* *
83250637 AATTATTAAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAG
* * * * *
83250691 GATTATCGAGATACCTTTGTGGGGTA
1 AATTATTGAAATACCCTTGTAGGGTA
83250717 ATATTACCAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (54 bp):
AATTATTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAG
Found at i:83251259 original size:28 final size:26
Alignment explanation
Indices: 83251216--83251345 Score: 134
Period size: 27 Copynumber: 4.8 Consensus size: 26
83251206 TGGAGGAAGC
*
83251216 GTTCTGGTGGCAATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
83251243 GTTTCTGGTGGCTATGCCAAAAATATCT
1 G-TTCTGGTGGCTATGCC-ACAATATCT
*
83251271 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * **
83251297 GTTTCTGGTGACTCTATCACAATATCT
1 G-TTCTGGTGGCTATGCCACAATATCT
* * *
83251324 GTTCTGGTAGCCATGCTACAAT
1 GTTCTGGTGGCTATGCCACAAT
83251346 TTCTATGGTG
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
26 23 0.27
27 39 0.45
28 23 0.27
29 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:83251345 original size:53 final size:54
Alignment explanation
Indices: 83251216--83251345 Score: 156
Period size: 53 Copynumber: 2.4 Consensus size: 54
83251206 TGGAGGAAGC
* * *
83251216 GTTCTGGTGGCAATGCCACAAATATCTGTTTCTGGTGGCTATGCCAAAAATATCT
1 GTTCTGGTGGCCATGCCAC-AATATCTGTTTCTGGTGACTATACCAAAAATATCT
* * *
83251271 GTTCTGGTGGCTC-TGCCACAATATCTGTTTCTGGTGACTCTATC-ACAATATCT
1 GTTCTGGTGGC-CATGCCACAATATCTGTTTCTGGTGACTATACCAAAAATATCT
* *
83251324 GTTCTGGTAGCCATGCTACAAT
1 GTTCTGGTGGCCATGCCACAAT
83251346 TTCTATGGTG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
52 1 0.02
53 26 0.40
54 21 0.32
55 17 0.26
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCCATGCCACAATATCTGTTTCTGGTGACTATACCAAAAATATCT
Found at i:83260826 original size:24 final size:24
Alignment explanation
Indices: 83260792--83260842 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
83260782 ATGTATCGAA
*
83260792 AAAAGCTGAAATGCCAAAAAGCCG
1 AAAAGCGGAAATGCCAAAAAGCCG
* *
83260816 AAAAGCGGAAATGCCGAAAAGCTG
1 AAAAGCGGAAATGCCAAAAAGCCG
83260840 AAA
1 AAA
83260843 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.18, G:0.24, T:0.08
Consensus pattern (24 bp):
AAAAGCGGAAATGCCAAAAAGCCG
Found at i:83260831 original size:16 final size:16
Alignment explanation
Indices: 83260812--83260842 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83260802 ATGCCAAAAA
83260812 GCCGAAAAGCGGAAAT
1 GCCGAAAAGCGGAAAT
*
83260828 GCCGAAAAGCTGAAA
1 GCCGAAAAGCGGAAA
83260843 GTTTGGCTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.19, G:0.29, T:0.06
Consensus pattern (16 bp):
GCCGAAAAGCGGAAAT
Found at i:83261135 original size:28 final size:28
Alignment explanation
Indices: 83261053--83261138 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
83261043 GTGAGCATGA
*
83261053 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
83261081 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * *
83261110 ATATGAATATGATTGGGCTTACTGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
83261138 A
1 A
83261139 AATACAGGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:83263977 original size:40 final size:39
Alignment explanation
Indices: 83263927--83264012 Score: 129
Period size: 40 Copynumber: 2.2 Consensus size: 39
83263917 GCTACTCGTT
*
83263927 CAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
83263966 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 C-AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
83264006 CAATGCC
1 CAATGCC
83264013 GCCCGGAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
39 7 0.16
40 34 0.79
41 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:83264026 original size:28 final size:29
Alignment explanation
Indices: 83263986--83264041 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
83263976 CGGGACTTAA
*
83263986 CCCGGATTTAGTAACTCGCAC-AATGCCG
1 CCCGGAATTAGTAACTCGCACAAATGCCG
83264014 CCCGGAATTAGTAACTCGCACAAATGCC
1 CCCGGAATTAGTAACTCGCACAAATGCC
83264042 TTCGGATCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.20
Consensus pattern (29 bp):
CCCGGAATTAGTAACTCGCACAAATGCCG
Found at i:83270146 original size:40 final size:41
Alignment explanation
Indices: 83270102--83270276 Score: 182
Period size: 40 Copynumber: 4.4 Consensus size: 41
83270092 GCCACTAGTT
* * *
83270102 CAAATACCTTCGGGA-CATGGGCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCATAGGCCGGATT-TAGTAACTCGCA
* *
83270142 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCATAGGCCGGATTTAGTAACTCGCA
* * *
83270182 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGATCATAGGCCGGATTTAGTAACTCGCA
* * * *
83270222 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGATCATAGGCCGGATTTAGTAAC-TCGCA
83270263 CAAA-GCCTTCGGGA
1 CAAATGCCTTCGGGA
83270277 CTTAGCCCGG
Statistics
Matches: 122, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 107 0.88
41 12 0.10
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCATAGGCCGGATTTAGTAACTCGCA
Found at i:83270214 original size:80 final size:80
Alignment explanation
Indices: 83270108--83270287 Score: 240
Period size: 80 Copynumber: 2.2 Consensus size: 80
83270098 AGTTCAAATA
* * * * *
83270108 CCTTCGGGACATGGGCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTA
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGATTTA
*
83270172 GTAAC-TCGCACAAATG
65 GTAACTTAGCACAAA-G
*
83270188 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGATTTA
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGATTTA
*
83270252 GTCACTTAGCACAAAG
65 GTAACTTAGCACAAAG
83270268 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
83270288 CATCATTCGA
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
79 3 0.03
80 72 0.82
81 13 0.15
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGATTTAG
TAACTTAGCACAAAG
Found at i:83270281 original size:40 final size:41
Alignment explanation
Indices: 83270139--83270287 Score: 225
Period size: 40 Copynumber: 3.7 Consensus size: 41
83270129 ATAGTAGCTC
*
83270139 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TC
1 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
*
83270179 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCA
1 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
*
83270220 -CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTA
1 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
*
83270260 GCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 GCACAAATGCCTTC-GGATCTTAGTCCGGA
83270288 CATCATTCGA
Statistics
Matches: 101, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
40 92 0.91
41 9 0.09
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
Found at i:83276506 original size:80 final size:80
Alignment explanation
Indices: 83276422--83276570 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
83276412 TATGGTAACC
* * * *
83276422 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
83276486 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
83276502 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
83276567 CCGG
66 CCGG
83276571 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:83276512 original size:40 final size:38
Alignment explanation
Indices: 83276463--83276570 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
83276453 ATCACGATTT
*
83276463 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
83276503 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
83276543 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
83276571 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:83288440 original size:40 final size:39
Alignment explanation
Indices: 83288395--83288524 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
83288385 CGGAATACAA
83288395 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
83288435 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
83288475 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
83288515 CCGGATATAA
1 CCGGATATAA
83288525 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:83294245 original size:19 final size:19
Alignment explanation
Indices: 83294208--83294251 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
83294198 AATTTAGGGA
**
83294208 TTATTTTTCTCCTTTAATT
1 TTATTTTTCTCCTAAAATT
*
83294227 TTATTTTTTTCCTAAAATT
1 TTATTTTTCTCCTAAAATT
*
83294246 CTATTT
1 TTATTT
83294252 CCCGTTTAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.14, G:0.00, T:0.66
Consensus pattern (19 bp):
TTATTTTTCTCCTAAAATT
Found at i:83299017 original size:43 final size:43
Alignment explanation
Indices: 83298961--83299176 Score: 224
Period size: 43 Copynumber: 5.0 Consensus size: 43
83298951 CATAGGATTT
* *
83298961 TCGATATGTGATTTCATGCAAGACCATGTCTGGGACGTTGGCA
1 TCGATATTTGATTTCATGTAAGACCATGTCTGGGACGTTGGCA
* * * *
83299004 TCGACT-TATGATTTACATATAAGACCATGTCTGGGACATCGGCA
1 TCGA-TATTTGATTT-CATGTAAGACCATGTCTGGGACGTTGGCA
* *
83299048 TCG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTTCATGTAAGACCATGTCTGGGAC-GTTGGCA
** * * *
83299090 TCGATATTTGATTTTGTGTAAGACCCTGTTTGGGATAG-TGGCA
1 TCGATATTTGATTTCATGTAAGACCATGTCTGGGA-CGTTGGCA
* * *
83299133 TCGATATTTGATTACATGTAAGACCAAGTCTGGGAAGTTGGCA
1 TCGATATTTGATTTCATGTAAGACCATGTCTGGGACGTTGGCA
83299176 T
1 T
83299177 TGTATGAGCT
Statistics
Matches: 146, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
42 29 0.20
43 88 0.60
44 29 0.20
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTTCATGTAAGACCATGTCTGGGACGTTGGCA
Found at i:83299141 original size:86 final size:88
Alignment explanation
Indices: 83298961--83299176 Score: 248
Period size: 86 Copynumber: 2.5 Consensus size: 88
83298951 CATAGGATTT
* *
83298961 TCGATATGTGATTTCATGCAAGACCATGTCTGGGAC-GTTGGCATCGACTTATGATTTACATATA
1 TCGATATTTGATTTCATGTAAGACCATGTCTGGGACAGTTGGCATCGACTTATGATTTACATATA
83299025 AGACCATGTCTGGGACATCGGCA
66 AGACCATGTCTGGGACATCGGCA
* * * ** *
83299048 TCG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAG-TGGCATCGA-TATTTGATTT-TGTGT
1 TCGATATTTGATTTCATGTAAGACCATGTCTGGGACAGTTGGCATCGACT-TATGATTTACATAT
* * *
83299109 AAGACCCTGTTTGGGATAGT-GGCA
65 AAGACCATGTCTGGGACA-TCGGCA
* *
83299133 TCGATATTTGATTACATGTAAGACCAAGTCTGGGA-AGTTGGCAT
1 TCGATATTTGATTTCATGTAAGACCATGTCTGGGACAGTTGGCAT
83299177 TGTATGAGCT
Statistics
Matches: 109, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
85 27 0.25
86 78 0.72
87 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (88 bp):
TCGATATTTGATTTCATGTAAGACCATGTCTGGGACAGTTGGCATCGACTTATGATTTACATATA
AGACCATGTCTGGGACATCGGCA
Found at i:83301060 original size:33 final size:33
Alignment explanation
Indices: 83300989--83301063 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
83300979 TCTCTGTTTG
* *
83300989 GTGTGTTGGTTGGACTAGCTCTTATAAGCACTA
1 GTGTGTTGGTTGGACTAGCTCTTATAAACAATA
* *
83301022 GTGTGTTGGTTGGATTAGCTCTTCTAAACAAT-
1 GTGTGTTGGTTGGACTAGCTCTTATAAACAATA
83301054 GATGTGTTGG
1 G-TGTGTTGG
83301064 AGGGATTGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 1 0.03
33 36 0.97
ACGTcount: A:0.20, C:0.12, G:0.29, T:0.39
Consensus pattern (33 bp):
GTGTGTTGGTTGGACTAGCTCTTATAAACAATA
Found at i:83309964 original size:5 final size:5
Alignment explanation
Indices: 83309956--83309985 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
83309946 CCTTAATACT
83309956 ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA
83309986 TCATGAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:83312996 original size:48 final size:48
Alignment explanation
Indices: 83312941--83313171 Score: 286
Period size: 48 Copynumber: 4.8 Consensus size: 48
83312931 GACATCGTGC
* *
83312941 TATATGTGCCTGTGTATGACCATGTCTAGGACATGGCATCAGCGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGA
*
83312989 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGA
* * * *
83313037 TATGTATGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGA
* * **
83313085 TATGTGTGCCGGTCAAAGACCATGTCTGGGACATGGCATC-GACGATGA
1 TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAG-CGATGA
* ** * *
83313133 TCTATG-GATTCATGTAAGACCATGTCAGGGACATGGCAT
1 TATATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
83313172 TAGTACTTTA
Statistics
Matches: 159, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
47 1 0.01
48 158 0.99
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
TATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGA
Found at i:83314593 original size:21 final size:19
Alignment explanation
Indices: 83314564--83314603 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
83314554 ATTATGTTCC
83314564 TTAACTATTTTTGTACAATTT
1 TTAACTA-TTTT-TACAATTT
*
83314585 TTAATTATTTTTACAATTT
1 TTAACTATTTTTACAATTT
83314604 AGAACAGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 4 0.22
21 6 0.33
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (19 bp):
TTAACTATTTTTACAATTT
Found at i:83315165 original size:38 final size:38
Alignment explanation
Indices: 83315122--83315330 Score: 184
Period size: 38 Copynumber: 5.0 Consensus size: 38
83315112 TTTTCAAATA
*
83315122 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
*
83315160 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* *
83315201 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
83315245 ACATGTATCAATATGTGTAAACGTGGTATATTCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
*
83315293 ACATGTATAACCATGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
83315331 TTTCCATTCC
Statistics
Matches: 142, Mismatches: 12, Indels: 34
0.76 0.06 0.18
Matches are distributed among these distances:
38 62 0.44
39 1 0.01
40 2 0.01
41 2 0.01
42 3 0.02
43 1 0.01
44 2 0.01
45 3 0.02
46 3 0.02
47 28 0.20
48 35 0.25
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:83315281 original size:48 final size:48
Alignment explanation
Indices: 83315162--83315300 Score: 217
Period size: 48 Copynumber: 2.9 Consensus size: 48
83315152 ACCACGTTAC
* *
83315162 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
83315209 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
83315257 ATGTGTAAACGTGGTATATTCACTTAGCACCACGTTACATGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
83315301 AACCATGGTA
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 34 0.41
48 49 0.59
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:83322324 original size:38 final size:38
Alignment explanation
Indices: 83322281--83322481 Score: 206
Period size: 38 Copynumber: 5.0 Consensus size: 38
83322271 TTTTCAAATA
*
83322281 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* * *
83322319 ACATGTTTAACCGTGGTACATCCACTTAGCACCAAGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
83322357 A-ATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
83322396 ACATGTATCAATATGTGTAAACGTGGTATATTCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
*
83322444 ACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
83322482 TTTCCATTCC
Statistics
Matches: 136, Mismatches: 16, Indels: 22
0.78 0.09 0.13
Matches are distributed among these distances:
37 3 0.02
38 64 0.47
39 29 0.21
40 2 0.01
42 2 0.01
46 2 0.01
48 34 0.25
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:83322432 original size:48 final size:48
Alignment explanation
Indices: 83322357--83322451 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
83322347 GCACCAAGTT
* *
83322357 AATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATC
1 AATATATGTAAACGTGGCATATCCACTTAGCACCACGTTACACGTATC
* * *
83322405 AATATGTGTAAACGTGGTATATTCACTTAGCACCACGTTACACGTAT
1 AATATATGTAAACGTGGCATATCCACTTAGCACCACGTTACACGTAT
83322452 AACCGTGGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
AATATATGTAAACGTGGCATATCCACTTAGCACCACGTTACACGTATC
Found at i:83327117 original size:30 final size:30
Alignment explanation
Indices: 83327081--83327141 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83327071 TCCTTAACTC
83327081 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
83327111 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
83327141 A
1 A
83327142 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:83333881 original size:44 final size:44
Alignment explanation
Indices: 83333806--83333891 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
83333796 TACATGTATT
** *
83333806 GCATCCATAATGAACCCAGAACAACTTAACGAGCTCGGATGCTC
1 GCATCCATAATGAACCCAGAACAACCCAACGAGCTCAGATGCTC
*** *
83333850 GCATCCATAATGAACTTGGACCAACCCAACGAGCTCAGATGC
1 GCATCCATAATGAACCCAGAACAACCCAACGAGCTCAGATGC
83333892 CTCATACATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.17
Consensus pattern (44 bp):
GCATCCATAATGAACCCAGAACAACCCAACGAGCTCAGATGCTC
Found at i:83340599 original size:27 final size:27
Alignment explanation
Indices: 83340569--83340676 Score: 89
Period size: 27 Copynumber: 4.0 Consensus size: 27
83340559 CTCATATCTG
**
83340569 TAGGGTAGAATTACTGAAATACCCCTA
1 TAGGGTAGAATTACCAAAATACCCCTA
*
83340596 TAGGGTAGAATTACCAAAATACCCCTGG
1 TAGGGTAGAATTACCAAAATACCCCT-A
** *
83340624 T-TTGTAAAATTACCAAAATA-CCC-A
1 TAGGGTAGAATTACCAAAATACCCCTA
*
83340648 T-GGTTTGTAAAATTACCAAAATACCCCTA
1 TAGG---GTAGAATTACCAAAATACCCCTA
83340677 ATTTGTGAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 10
0.78 0.11 0.12
Matches are distributed among these distances:
24 1 0.02
26 3 0.05
27 57 0.86
28 4 0.06
29 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (27 bp):
TAGGGTAGAATTACCAAAATACCCCTA
Found at i:83340681 original size:27 final size:27
Alignment explanation
Indices: 83340604--83340804 Score: 199
Period size: 27 Copynumber: 7.4 Consensus size: 27
83340594 TATAGGGTAG
*
83340604 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
83340631 AATTACCAAAATACCCATGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
83340658 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* * *
83340685 AATTATCGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
* * ** *
83340712 AATTATCGAAATACCTTTAATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
*
83340739 AATTACCAAAATACCCCTGATTTGGAA
1 AATTACCAAAATACCCCTGATTTGTAA
* * **
83340766 AATTA-CAGAAATACCCTTAATTTAAAA
1 AATTACCA-AAATACCCCTGATTTGTAA
*
83340793 AATTACAAAAAT
1 AATTACCAAAAT
83340805 GCCATTGACT
Statistics
Matches: 145, Mismatches: 25, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
26 6 0.04
27 136 0.94
28 3 0.02
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:83340712 original size:81 final size:81
Alignment explanation
Indices: 83340625--83340782 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 81
83340615 TACCCCTGGT
**
83340625 TTGTAAAATTACCAAAATACCCATGGTTTGTAAAATTACCAAAATACCCCTAATTTGTG-AAATT
1 TTGTAAAATTACCAAAATACCCATAATTTGTAAAATTACCAAAATACCCCTAATTTG-GAAAATT
83340689 ATC-GAAATACCCTCGAC
65 A-CAGAAATACCCTCGAC
* * ** *
83340706 TTGTAAAATTATCGAAATACCTTTAATTTGTAAAATTACCAAAATACCCCTGATTTGGAAAATTA
1 TTGTAAAATTACCAAAATACCCATAATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTA
83340771 CAGAAATACCCT
66 CAGAAATACCCT
83340783 TAATTTAAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 66 0.97
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCCATAATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTA
CAGAAATACCCTCGAC
Found at i:83340826 original size:28 final size:27
Alignment explanation
Indices: 83340720--83340838 Score: 85
Period size: 27 Copynumber: 4.4 Consensus size: 27
83340710 AAAATTATCG
* ** *
83340720 AAATACCTTTAATTTGTAAAATTACCA
1 AAATACCATTAATTTAAAAAATTACAA
** * ** *
83340747 AAATACCCCTGATTTGGAAAATTACAG
1 AAATACCATTAATTTAAAAAATTACAA
*
83340774 AAATACCCTTAATTTAAAAAATTACAA
1 AAATACCATTAATTTAAAAAATTACAA
* * * *
83340801 AAATGCCATTGACTTTCAAAAATTACTA
1 AAATACCATT-AATTTAAAAAATTACAA
*
83340829 AAATATCATT
1 AAATACCATT
83340839 GGTTTGCAAA
Statistics
Matches: 73, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
27 51 0.70
28 22 0.30
ACGTcount: A:0.46, C:0.16, G:0.06, T:0.32
Consensus pattern (27 bp):
AAATACCATTAATTTAAAAAATTACAA
Found at i:83341366 original size:21 final size:22
Alignment explanation
Indices: 83341313--83341376 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
83341303 GCCCATTATT
*
83341313 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
83341335 CT-ACATATGGCTCTGTGCCAA-
1 CTGA-TTATGGCTCTGTGCCAAC
*
83341356 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
83341377 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 18 0.50
22 18 0.50
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:83341527 original size:8 final size:8
Alignment explanation
Indices: 83341514--83341539 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
83341504 GCCGATGGCT
83341514 TTGTGCCA
1 TTGTGCCA
83341522 TTGTGCCA
1 TTGTGCCA
83341530 TTGTGCCA
1 TTGTGCCA
83341538 TT
1 TT
83341540 CTGCTTACGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (8 bp):
TTGTGCCA
Found at i:83341604 original size:22 final size:22
Alignment explanation
Indices: 83341586--83341661 Score: 125
Period size: 22 Copynumber: 3.5 Consensus size: 22
83341576 CGTTGCTGCT
83341586 ATGTTTACGGCTATGTGCTGTC
1 ATGTTTACGGCTATGTGCTGTC
83341608 ATGTTTACGGCTATGTGCTGTC
1 ATGTTTACGGCTATGTGCTGTC
*
83341630 ATGTTTATGGCTATGTGCTGTC
1 ATGTTTACGGCTATGTGCTGTC
* *
83341652 CTGTCTACGG
1 ATGTTTACGG
83341662 TATTGAGTCG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.13, C:0.18, G:0.28, T:0.41
Consensus pattern (22 bp):
ATGTTTACGGCTATGTGCTGTC
Found at i:83345580 original size:182 final size:181
Alignment explanation
Indices: 83345242--83345608 Score: 574
Period size: 182 Copynumber: 2.0 Consensus size: 181
83345232 TAGCTTCTCC
* *
83345242 GATGACTCGTTTAATGCAAAAATATGTAAAATTTGAGTGGACTAATAAATGCCAATAGAGTTTTG
1 GATGACTCGTTTAATGCAAAAAGATGTAAAATTTGAGCGGACTAATAAATGCCAATAGAGTTTTG
* * *
83345307 ATAGATTAAAAGCTTTATTGATAGAAGCACCAGTGTTAGTTCAACCAGAATTGGGTAAGGAATTT
66 ATAGATGAAAAGCTTTATTGATAGAAACACCAGTGTTAGTTCAACCAGAATCGGGTAAGGAATTT
*
83345372 ACAGTTTAGAGTGATGCATCATTGAATGGTTTAAGCTGTGTTTTGATGCAA
131 ACAGTTTACAGTGATGCATCATTGAATGGTTTAAGCTGTGTTTTGATGCAA
* * *
83345423 GATGACTCGTTTACTTCAAAAAAGATGTAAAATTTGAGCGGACTAATAAATTCCAATAGAGTTTT
1 GATGACTCGTTTAATGC-AAAAAGATGTAAAATTTGAGCGGACTAATAAATGCCAATAGAGTTTT
* *
83345488 GATAGATGAAAAGCTTTATTGATTGAAACACCAGTGTTAGTTCAACCAGAATCGGGT-ATGAAGT
65 GATAGATGAAAAGCTTTATTGATAGAAACACCAGTGTTAGTTCAACCAGAATCGGGTAAGGAA-T
** * *
83345552 TTACAGTTTACAGTGATGTGTTATTGAATGGTTTAGGCTGTGTTTTGATGCAA
129 TTACAGTTTACAGTGATGCATCATTGAATGGTTTAAGCTGTGTTTTGATGCAA
83345605 GATG
1 GATG
83345609 GTAAAGTAGT
Statistics
Matches: 169, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
181 19 0.11
182 150 0.89
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (181 bp):
GATGACTCGTTTAATGCAAAAAGATGTAAAATTTGAGCGGACTAATAAATGCCAATAGAGTTTTG
ATAGATGAAAAGCTTTATTGATAGAAACACCAGTGTTAGTTCAACCAGAATCGGGTAAGGAATTT
ACAGTTTACAGTGATGCATCATTGAATGGTTTAAGCTGTGTTTTGATGCAA
Found at i:83348979 original size:48 final size:51
Alignment explanation
Indices: 83348864--83349102 Score: 274
Period size: 51 Copynumber: 4.8 Consensus size: 51
83348854 TCTATTGTGA
* *
83348864 GGTCGCATGTGTAGTATTAAATGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
* * * * * * *
83348915 GATCACATGTGTAGTACTAAGTGTA-GCTACTACGTGTACCGGATAA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
*
83348963 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
* * * * * **
83349014 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
*
83349063 GGTTGCATGTG-AGTACTAAGTGCAGGCTACTATGCGTACC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
83349103 AGATAGCTTC
Statistics
Matches: 155, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 50 0.32
49 26 0.17
50 19 0.12
51 60 0.39
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
Found at i:83349035 original size:99 final size:100
Alignment explanation
Indices: 83348864--83349102 Score: 392
Period size: 99 Copynumber: 2.4 Consensus size: 100
83348854 TCTATTGTGA
*
83348864 GGTCGCATGTGTAGTATTAAATGCAGGCTACTATGCGTACCCGAAAACTGTGATCACATGTGTAG
1 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAAAACTGTGATCACATGTGTAG
* *
83348929 TACTAAGTGTA-GCTACTACGTGTACCGGATAATT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
83348963 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAAAACTGTGATCACATGTGTAG
* *
83349028 TACTAAGTGCAGGCTACTATGTGTACCAGATTATT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
83349063 GGTTGCATGTG-AGTACTAAGTGCAGGCTACTATGCGTACC
1 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACC
83349103 AGATAGCTTC
Statistics
Matches: 131, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
99 101 0.77
100 30 0.23
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAAAACTGTGATCACATGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:83354047 original size:43 final size:43
Alignment explanation
Indices: 83353962--83354048 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
83353952 GTTACATGTA
* * * *
83353962 TCGCATCCATTATGAACTCGGACTAGTCAACGAGCCCGGATGC
1 TCGCATCCATAATGAACTCGGACAACTCAACGAGCCCAGATGC
* * *
83354005 TCGCATTCATAATGAACTCGGACAACTCAATGAGCTCAGATGC
1 TCGCATCCATAATGAACTCGGACAACTCAACGAGCCCAGATGC
83354048 T
1 T
83354049 ACATATATCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGGACAACTCAACGAGCCCAGATGC
Found at i:83354120 original size:43 final size:42
Alignment explanation
Indices: 83354019--83354126 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 42
83354009 ATTCATAATG
** *
83354019 AACTCGGACAACTCAATGAGCTCAGATGCTACATATATCACT
1 AACTCGGACAACTCAACAAGCTCAGATGCTACATATATCACA
** * * * *
83354061 AACTTAGACTAGTCAACAAGTTCAGATTCTCACATATATCACA
1 AACTCGGACAACTCAACAAGCTCAGATGCT-ACATATATCACA
* *
83354104 AACTCGGACCACTCAACGAGCTC
1 AACTCGGACAACTCAACAAGCTC
83354127 GGATTTCTTA
Statistics
Matches: 50, Mismatches: 15, Indels: 1
0.76 0.23 0.02
Matches are distributed among these distances:
42 22 0.44
43 28 0.56
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (42 bp):
AACTCGGACAACTCAACAAGCTCAGATGCTACATATATCACA
Found at i:83355827 original size:29 final size:29
Alignment explanation
Indices: 83355795--83355852 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
83355785 ATATGATAAT
*
83355795 GACTTGAAAGAATATTGCTTGATGAGCTC
1 GACTTGAAAGAATATTGCTCGATGAGCTC
* *
83355824 GACTTGAAATAGTATTGCTCGATGAGCTC
1 GACTTGAAAGAATATTGCTCGATGAGCTC
83355853 ATCTATGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (29 bp):
GACTTGAAAGAATATTGCTCGATGAGCTC
Found at i:83359416 original size:40 final size:40
Alignment explanation
Indices: 83359339--83359556 Score: 323
Period size: 40 Copynumber: 5.5 Consensus size: 40
83359329 CAAACAAGTA
* *
83359339 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
83359378 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
83359418 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
83359458 CCTTCGGGACTTAGCCTAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
83359498 CCTTCGGGACTTAGACCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
83359538 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83359557 TTATCATCCG
Statistics
Matches: 164, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.09
40 149 0.91
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:83361587 original size:43 final size:40
Alignment explanation
Indices: 83361463--83361647 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
83361453 AACCCAAGTA
* * * *
83361463 CCTTCGGGATTTAG-TCGGATATAG-CAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
83361502 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
83361542 CCTTCGAGACTTAGCCTGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
83361585 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
83361625 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
83361648 CATCCGAATA
Statistics
Matches: 125, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 13 0.10
40 76 0.61
41 1 0.01
43 34 0.27
44 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:83373902 original size:30 final size:32
Alignment explanation
Indices: 83373848--83373908 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 32
83373838 GCCACATTAG
83373848 ATATTTAGCAGTAGGTTGAAA-TTTTCCATCT
1 ATATTTAGCAGTAGGTTGAAATTTTTCCATCT
83373879 ATATTTAGCAGTAGGTT-AAATTTTTCCATC
1 ATATTTAGCAGTAGGTTGAAATTTTTCCATC
83373909 CATTTTGAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (32 bp):
ATATTTAGCAGTAGGTTGAAATTTTTCCATCT
Found at i:83374191 original size:31 final size:31
Alignment explanation
Indices: 83374151--83374217 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
83374141 GTTACAAAAT
* *
83374151 AGTCGTTGAATTATTTAAAAATTTTCATTTA
1 AGTCATTGAATTATTCAAAAATTTTCATTTA
* *
83374182 AGTCATTGAATTATTCAAATATTTTTATTTA
1 AGTCATTGAATTATTCAAAAATTTTCATTTA
83374213 AGTCA
1 AGTCA
83374218 CTAGGTTGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (31 bp):
AGTCATTGAATTATTCAAAAATTTTCATTTA
Found at i:83378214 original size:13 final size:13
Alignment explanation
Indices: 83378182--83378206 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83378172 TTAAAAATAT
83378182 ATTATATAATAAA
1 ATTATATAATAAA
83378195 ATTATATAATAA
1 ATTATATAATAA
83378207 TTTAATATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTATATAATAAA
Found at i:83379598 original size:16 final size:16
Alignment explanation
Indices: 83379577--83379635 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
83379567 GGAAGAGAAG
* *
83379577 AGGCGTAAAGATCGAA
1 AGGCGTTAACATCGAA
*
83379593 AGGCGTTATCATCGAA
1 AGGCGTTAACATCGAA
* *
83379609 AAGCGTTAACACCGAA
1 AGGCGTTAACATCGAA
83379625 AGGCGTTAACA
1 AGGCGTTAACA
83379636 CAATTACATC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (16 bp):
AGGCGTTAACATCGAA
Found at i:83384909 original size:35 final size:36
Alignment explanation
Indices: 83384858--83384926 Score: 113
Period size: 35 Copynumber: 1.9 Consensus size: 36
83384848 CCCAGAAGAG
* *
83384858 AAAACAGTCGATAGAAAGAGTAAT-GGGAGAAAGCA
1 AAAACAGTCGACAGAAACAGTAATGGGGAGAAAGCA
83384893 AAAACAGTCGACAGAAACAGTAATGGGGAGAAAG
1 AAAACAGTCGACAGAAACAGTAATGGGGAGAAAG
83384927 TACCATCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 22 0.71
36 9 0.29
ACGTcount: A:0.51, C:0.10, G:0.29, T:0.10
Consensus pattern (36 bp):
AAAACAGTCGACAGAAACAGTAATGGGGAGAAAGCA
Found at i:83386677 original size:58 final size:57
Alignment explanation
Indices: 83386528--83386677 Score: 151
Period size: 57 Copynumber: 2.6 Consensus size: 57
83386518 ATTGTATAAC
* * *
83386528 AGGATTACTAGTCCAGGCTAAATCCTTTATATAACGTATACTCAAAAGAGTTCAATT
1 AGGATTACCAGTCCAAGCTAAATCCTTTCTATAACGTATACTCAAAAGAGTTCAATT
* * * * * *
83386585 AGGATTACCAGTCCAGGCTAAACCCTAATC-ATAACGTATACTCGAGAG-GTATTATATT
1 AGGATTACCAGTCCAAGCTAAATCCT-TTCTATAACGTATACTCAAAAGAGT-TCA-ATT
* * *
83386643 CGGATTACCTGTTCAAGCTAAATCCTTTCTATAAC
1 AGGATTACCAGTCCAAGCTAAATCCTTTCTATAAC
83386678 AAGGTCAATA
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
56 2 0.03
57 44 0.58
58 30 0.39
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (57 bp):
AGGATTACCAGTCCAAGCTAAATCCTTTCTATAACGTATACTCAAAAGAGTTCAATT
Found at i:83388361 original size:29 final size:29
Alignment explanation
Indices: 83388322--83388400 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
83388312 CTTAATAATC
*
83388322 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
83388352 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
83388381 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
83388401 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:83389059 original size:8 final size:8
Alignment explanation
Indices: 83389046--83389075 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
83389036 GCCGAATATG
83389046 TATATCTA
1 TATATCTA
83389054 TATATCTA
1 TATATCTA
*
83389062 TATATATA
1 TATATCTA
83389070 TATATC
1 TATATC
83389076 AACTATACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (8 bp):
TATATCTA
Found at i:83395819 original size:40 final size:39
Alignment explanation
Indices: 83395654--83395837 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
83395644 AAATTGAATG
* * *
83395654 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
83395694 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
83395734 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
83395774 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
83395813 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
83395838 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:83395862 original size:80 final size:81
Alignment explanation
Indices: 83395694--83395882 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
83395684 GCTGGAAATT
* * * *
83395694 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
83395759 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
83395775 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
83395838 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
83395854 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
83395883 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:83403920 original size:40 final size:39
Alignment explanation
Indices: 83403755--83403938 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
83403745 AAATTGAATG
* * *
83403755 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
83403795 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
83403835 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
83403875 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
83403914 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
83403939 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:83403963 original size:80 final size:81
Alignment explanation
Indices: 83403795--83403983 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
83403785 GCTGGAAATT
* * * *
83403795 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
83403860 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
83403876 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
83403939 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
83403955 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
83403984 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:83406756 original size:78 final size:79
Alignment explanation
Indices: 83406659--83406809 Score: 250
Period size: 78 Copynumber: 1.9 Consensus size: 79
83406649 AATGTTCGAG
*
83406659 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGC
1 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAACTATGATATCCGGGCTAAGTCCCGAAGGC
83406723 AATTGTGCAAGCTA
66 AATTGTGCAAGCTA
* * *
83406737 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAACTATGATATCCGGGCTAAGTCCCGAAGGC
*
83406802 ATTTGTGC
66 AATTGTGC
83406810 GGGTTACCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
78 51 0.76
79 16 0.24
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (79 bp):
TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAACTATGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCAAGCTA
Found at i:83406840 original size:40 final size:39
Alignment explanation
Indices: 83406659--83406810 Score: 223
Period size: 39 Copynumber: 3.9 Consensus size: 39
83406649 AATGTTCGAG
*
83406659 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
83406698 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* ** *
83406737 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
83406776 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
83406811 GGTTACCATA
Statistics
Matches: 102, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 85 0.83
40 17 0.17
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:83409262 original size:23 final size:24
Alignment explanation
Indices: 83409162--83409325 Score: 103
Period size: 23 Copynumber: 6.9 Consensus size: 24
83409152 GAGTCCTAAT
*
83409162 CAGTAAGCTCCT-TCTGAGCTGATGAA
1 CAGTAAGCT-CTATATGAGCTGA--AA
*
83409188 CAGTAAGCTCTAT-TGAGCAGAAA
1 CAGTAAGCTCTATATGAGCTGAAA
* * * *
83409211 CGGTAATCTCTAT-CGAGTTG-AA
1 CAGTAAGCTCTATATGAGCTGAAA
*
83409233 CAATAAGCT-TATATGAGCTGAAA
1 CAGTAAGCTCTATATGAGCTGAAA
* *
83409256 CGGTAAGCT-TCA-ATGAGCTAATAA
1 CAGTAAGCTCT-ATATGAGCTGA-AA
83409280 CAGTAAGCTCT-TATGAGCTGATATA
1 CAGTAAGCTCTATATGAGCTGA-A-A
*
83409305 TCAGTAAGCTC-ATACGAGCTG
1 -CAGTAAGCTCTATATGAGCTG
83409326 TGGTGAGTCC
Statistics
Matches: 111, Mismatches: 17, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
21 3 0.03
22 13 0.12
23 35 0.32
24 21 0.19
25 11 0.10
26 28 0.25
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (24 bp):
CAGTAAGCTCTATATGAGCTGAAA
Found at i:83409312 original size:26 final size:25
Alignment explanation
Indices: 83409231--83409325 Score: 90
Period size: 26 Copynumber: 3.9 Consensus size: 25
83409221 TATCGAGTTG
* *
83409231 AACAATAAGCTTATATGAGCTG-A-
1 AACAGTAAGCTCATATGAGCTGAAT
*
83409254 AACGGTAAGCTTCA-ATGAGCT-AAT
1 AACAGTAAGC-TCATATGAGCTGAAT
*
83409278 AACAGTAAGCTCTTATGAGCTGATAT
1 AACAGTAAGCTCATATGAGCTGA-AT
* *
83409304 ATCAGTAAGCTCATACGAGCTG
1 AACAGTAAGCTCATATGAGCTG
83409326 TGGTGAGTCC
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
23 18 0.31
24 18 0.31
25 1 0.02
26 21 0.36
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (25 bp):
AACAGTAAGCTCATATGAGCTGAAT
Found at i:83413336 original size:50 final size:50
Alignment explanation
Indices: 83413255--83413487 Score: 227
Period size: 50 Copynumber: 4.6 Consensus size: 50
83413245 TCCATTGTGA
* *
83413255 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAACAAATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTAACAGATTGATAG
* * *** * * *
83413305 GTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGT-ACTCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTAAC-AGATTGA--TAG
* * * * * * *
83413356 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTAACAGATTGATAG
* ** *
83413406 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTTCCAGATTTATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTAACAGATTGATAG
*
83413456 GTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTA
83413488 TGGGTACCAG
Statistics
Matches: 145, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
49 5 0.03
50 104 0.72
51 34 0.23
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTAACAGATTGATAG
Found at i:83413432 original size:101 final size:101
Alignment explanation
Indices: 83413256--83413437 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
83413246 CCATTGTGAG
* * *
83413256 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAACAAATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAACAAATGGATAAGTCACATGTGTAGTAC
83413321 TAAGTACAGGCTACTATGCGTACTCGTTAACTTCGA
66 TAAGTACAGGCTACTATGCGTACTCGTTAACTTCGA
* * * * *
83413357 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAACAAATGGATAAGTCACATGTGTAGTAC
*
83413422 TAAGTGCAGGCTACTA
66 TAAGTACAGGCTACTA
83413438 CATGTTCCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAACAAATGGATAAGTCACATGTGTAGTAC
TAAGTACAGGCTACTATGCGTACTCGTTAACTTCGA
Found at i:83418691 original size:20 final size:20
Alignment explanation
Indices: 83418642--83418691 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
83418632 TGGGCAAGGA
*
83418642 ACACGGGCGCGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
83418662 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
*
83418682 ACACGCGCGT
1 ACACGGGCGT
83418692 ATGGGATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.20, C:0.42, G:0.30, T:0.08
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:83420956 original size:23 final size:24
Alignment explanation
Indices: 83420908--83420956 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
83420898 AAGGTTAGGG
*
83420908 TTTAATATTTAAGGTTTAAGGTTT
1 TTTAATATTTAAGGTTTAAGGATT
83420932 TTTAAT-TTTAAGTGTTT-AGGATT
1 TTTAATATTTAAG-GTTTAAGGATT
83420955 TT
1 TT
83420957 AGGGTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (24 bp):
TTTAATATTTAAGGTTTAAGGATT
Found at i:83423893 original size:30 final size:30
Alignment explanation
Indices: 83423859--83423920 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
83423849 AATTGATGGA
83423859 TAGAATTGAAATTTTAATTATTCAATTAGT
1 TAGAATTGAAATTTTAATTATTCAATTAGT
83423889 TAGAATTGAAATTTTAATTATTCAATTAGT
1 TAGAATTGAAATTTTAATTATTCAATTAGT
83423919 TA
1 TA
83423921 AATCTAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (30 bp):
TAGAATTGAAATTTTAATTATTCAATTAGT
Found at i:83429732 original size:40 final size:40
Alignment explanation
Indices: 83429688--83429868 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
83429678 GCTCGATTGT
* * *
83429688 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
83429728 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
83429768 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
83429808 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
83429849 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAGCCCGGAT
83429869 ACCATTCGAA
Statistics
Matches: 118, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 87 0.74
41 27 0.23
42 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:83429786 original size:80 final size:81
Alignment explanation
Indices: 83429688--83429866 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 81
83429678 GCTCGATTGT
* * * *
83429688 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
83429752 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* * *
83429768 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
83429833 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
83429849 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
83429867 ATACCATTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 58 0.67
81 28 0.33
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:83433481 original size:40 final size:40
Alignment explanation
Indices: 83433422--83433629 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
83433412 CAATTGAATG
* * *
83433422 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
83433462 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
83433502 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
83433542 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
83433582 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
83433622 ATATCCGG
1 ATATCCGG
83433630 TTGTAATCCG
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:83433560 original size:80 final size:80
Alignment explanation
Indices: 83433424--83433629 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
83433414 ATTGAATGAT
* * * * * *
83433424 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
83433489 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
83433504 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
83433569 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
83433584 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
83433630 TTGTAATCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:83458809 original size:20 final size:20
Alignment explanation
Indices: 83458741--83458809 Score: 59
Period size: 20 Copynumber: 3.3 Consensus size: 20
83458731 CATAAGCGAA
83458741 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
** * *
83458761 CTCGGGTTC-ACATCCATAGTGAA
1 CTCGGACTCAAC-T-CA-A-CGAG
83458784 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
83458804 CTCGGA
1 CTCGGA
83458810 TGCCTAGTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
19 2 0.06
20 16 0.44
21 3 0.08
22 3 0.08
23 10 0.28
24 2 0.06
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.19
Consensus pattern (20 bp):
CTCGGACTCAACTCAACGAG
Found at i:83458947 original size:88 final size:92
Alignment explanation
Indices: 83458737--83458992 Score: 420
Period size: 88 Copynumber: 2.9 Consensus size: 92
83458727 CGCCCATAAG
* *
83458737 CGAACTCGGACTCAACTCAACGAGCTCGG--GTTCACATCCAT-AGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTC-GACTCAACTCA
*
83458799 ACGAGCTCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
83458827 CGAACTCGGACTCAACTCAACGAGTTC-GACGTTCGCATCCATAAGTGAACTCGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGACTCAACTCAA
83458891 C-AGTTCGGATGCCTAGTTACAT-TCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
83458916 CGAACTC-GACTCAACTCAACGA-TTCGGACGTTCGCATCCATAAGTGAACTCGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGACTCAACTCAA
83458979 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
83458993 CAAATATCCG
Statistics
Matches: 158, Mismatches: 3, Indels: 11
0.92 0.02 0.06
Matches are distributed among these distances:
87 3 0.02
88 53 0.34
89 23 0.15
90 46 0.29
91 24 0.15
92 9 0.06
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83458965 original size:44 final size:46
Alignment explanation
Indices: 83458730--83458988 Score: 224
Period size: 44 Copynumber: 5.8 Consensus size: 46
83458720 TGTAACCCGC
* *
83458730 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--GTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
83458774 CCAT-AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
*
83458823 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * *
83458865 CCATAAGTGAACTC-GACTCAACTCAAC-AGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* *
83458909 ACATTCA-CGAACTC-GACTCAACTCAACGA-TTCGGACGTTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
83458953 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83458989 TGCCCAAATA
Statistics
Matches: 176, Mismatches: 20, Indels: 37
0.76 0.09 0.16
Matches are distributed among these distances:
41 3 0.02
42 3 0.02
43 41 0.23
44 75 0.43
45 17 0.10
46 2 0.01
47 26 0.15
48 2 0.01
49 4 0.02
50 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:83464200 original size:47 final size:47
Alignment explanation
Indices: 83464131--83464289 Score: 175
Period size: 47 Copynumber: 3.4 Consensus size: 47
83464121 AAGTGAATTG
*
83464131 GGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTC
1 GGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTC
* * * * *
83464178 GGACTAAACTCAATGAGTTCGGA---C--GTTCGCATCCTAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-CTCA-CGAACTC
* * *
83464223 GGACTCAACTCAACGAGTTCAGATGCCTAGTTAAATCTCACGAACTA
1 GGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTC
83464270 GGACTCAACTCAACGAGTTC
1 GGACTCAACTCAACGAGTTC
83464290 AAATGTTCGC
Statistics
Matches: 90, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 4 0.04
45 26 0.29
47 45 0.50
48 4 0.04
49 2 0.02
50 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
GGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTC
Found at i:83464248 original size:92 final size:93
Alignment explanation
Indices: 83464078--83464342 Score: 370
Period size: 92 Copynumber: 2.9 Consensus size: 93
83464068 TGCCCATAAG
* * * * * *
83464078 CGAACTCGGATTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAATTGGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
83464143 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTAAATCTCA
* *
83464171 CGAACTCGGACTAAACTCAATGAGTTCGGACGTTCGCATCC-TAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83464235 ACGAGTTCAGATGCCTAGTTAAATCTCA
66 ACGAGTTCGGATGCCTAGTTAAATCTCA
* ** * * *
83464263 CGAACTAGGACTCAACTCAACGAGTTCAAATGTTCGCATCCATAAGTAAACTCGGACTCAGCTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
83464328 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
83464343 CAAATATCTG
Statistics
Matches: 151, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
92 81 0.54
93 70 0.46
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTAAATCTCA
Found at i:83468002 original size:6 final size:6
Alignment explanation
Indices: 83467964--83468050 Score: 50
Period size: 6 Copynumber: 13.3 Consensus size: 6
83467954 GGCGGGAGGG
* *
83467964 GGGAG- GGGAGA GGGGAGA GAAGAGA GTGAGAGA GGGAGA GGGAGT GGGAGAAA
1 GGGAGA GGGAGA -GGGAGA G-GGAGA G-G-GAGA GGGAGA GGGAGA GGGAG--A
* * *
83468017 GGGAGA GAGAGA GGGGGGA GGGGGA GGGAAGA GG
1 GGGAGA GGGAGA -GGGAGA GGGAGA GGG-AGA GG
83468051 TAATTCCAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
5 5 0.08
6 30 0.46
7 20 0.31
8 10 0.15
ACGTcount: A:0.33, C:0.00, G:0.64, T:0.02
Consensus pattern (6 bp):
GGGAGA
Found at i:83468965 original size:61 final size:60
Alignment explanation
Indices: 83468839--83468953 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 60
83468829 ATATTTTAAA
* ** * * *
83468839 TTTTTAGAGTTAGGAATAGTTGATAGATTTTGTAAATATTCAGGGCCAAATTAATTGAAT
1 TTTTTAGAATTAGGAATAAATGATAGATTTTGTAAATATTAAGAGCAAAATTAATTGAAT
83468899 TTTTTAGAATTAGGAATAAAATGATCA-ATTTTGTAAATATTAAGAGCTAAAATTA
1 TTTTTAGAATTAGGAAT-AAATGAT-AGATTTTGTAAATATTAAGAGC-AAAATTA
83468954 TTGTTTCTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
60 16 0.35
61 23 0.50
62 7 0.15
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.39
Consensus pattern (60 bp):
TTTTTAGAATTAGGAATAAATGATAGATTTTGTAAATATTAAGAGCAAAATTAATTGAAT
Found at i:83469787 original size:6 final size:6
Alignment explanation
Indices: 83469776--83469804 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
83469766 AAAAAGGTTT
83469776 TTCATC TTCATC TTCATC TTCATC TTCAT
1 TTCATC TTCATC TTCATC TTCATC TTCAT
83469805 ACGTATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCATC
Found at i:83476843 original size:29 final size:29
Alignment explanation
Indices: 83476810--83476912 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
83476800 GTGACGAGAT
83476810 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83476839 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
83476868 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
83476897 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
83476913 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83484033 original size:29 final size:29
Alignment explanation
Indices: 83484000--83484131 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
83483990 GTGACGAGAT
83484000 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
83484029 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83484058 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
83484087 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
83484116 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
83484132 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83490611 original size:125 final size:125
Alignment explanation
Indices: 83490388--83490612 Score: 308
Period size: 125 Copynumber: 1.8 Consensus size: 125
83490378 GAATTATGTG
* * * * * *
83490388 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTGAATGACACCCGGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAATTGAATGACACCCGGG
* **
83490453 CTAAGTCCCGAAGGCGATTAATGCTAGTGATTATAATTTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACGATTAATGCTAGAAATTATAATTTGTGTTTGAGCCTTAGTAACGA
* *
83490513 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAG-AATTGAATGACACCCGG
* * *
83490578 GCTAAGT-CCGAAGACGTTTTATGCTGGAAATTATA
65 GCTAAGTCCCGAAGACGATTAATGCTAGAAATTATA
83490613 TCCGGGTTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
125 64 0.75
126 21 0.25
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.34
Consensus pattern (125 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAATTGAATGACACCCGGG
CTAAGTCCCGAAGACGATTAATGCTAGAAATTATAATTTGTGTTTGAGCCTTAGTAACGA
Found at i:83498705 original size:123 final size:123
Alignment explanation
Indices: 83498485--83498707 Score: 313
Period size: 123 Copynumber: 1.8 Consensus size: 123
83498475 GAATTATGTG
* * * * * * *
83498485 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGACACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGACACCCGG
* **
83498550 GCTAAGTCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
* *
83498608 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGACACCCGG
*
83498673 GCTAAGTCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCGAAGACGATTA-TGCTAGAAATTATAT
83498708 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
122 3 0.03
123 83 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (123 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGACACCCGG
GCTAAGTCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:83498750 original size:40 final size:39
Alignment explanation
Indices: 83498705--83498814 Score: 141
Period size: 40 Copynumber: 2.8 Consensus size: 39
83498695 CTGGAAATTA
* *
83498705 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGCGG-TAC
** *
83498746 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTC
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGCGGTAC
83498785 TATCCGGGCTAAGACCCGAAGGCATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTGTGC
83498815 ACGTGGTTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
39 9 0.15
40 53 0.85
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGCGGTAC
Found at i:83505562 original size:165 final size:162
Alignment explanation
Indices: 83505254--83505582 Score: 534
Period size: 165 Copynumber: 2.0 Consensus size: 162
83505244 ATTCTCTTTC
*
83505254 AACTCACTATATTGTGTTTAAACAAACCATTACCCTATTTTTGTAGTTAAGCCCTTTACTTCATC
1 AACTCACTATATTGTGTTTAAACAAACCATTAACCTATTTTTGTAGTTAAGCCCTTTACTTCATC
*
83505319 CGGAGATATTACAGCTAAACAGCCATGTTTACAAGCTGCATACACTTCATCCGAAGATATTACAA
66 CGGAGATATTACAGCTAAACAGCCATGTTTACAAGCTGCATACACTTCATCCAAAGATATTACAA
*
83505384 CAGCTTAATGTGCTCCATGCTCTTTAACCAAA
131 CAGCTTAATGTGCTCCATGCACTTTAACCAAA
*
83505416 AACTCATTATATTGTGTTTAAACAAACCATTAACCTATTTTTGTAGTTTAATAAGCCCTTTACTT
1 AACTCACTATATTGTGTTTAAACAAACCATTAACCTATTTTTGTAG--T--TAAGCCCTTTACTT
* *
83505481 CATCCGGAGATATTACAGCTAAACAGTCATG-TTACAAGCTGCATGCACTTCATCCAAAGATATT
62 CATCCGGAGATATTACAGCTAAACAGCCATGTTTACAAGCTGCATACACTTCATCCAAAGATATT
* * *
83505545 ACAGCAGCTTCATGTGCTGCATGCACTTTAACCAAA
127 ACAACAGCTTAATGTGCTCCATGCACTTTAACCAAA
83505581 AA
1 AA
83505583 TATCACAGCA
Statistics
Matches: 154, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
162 44 0.29
164 1 0.01
165 65 0.42
166 44 0.29
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (162 bp):
AACTCACTATATTGTGTTTAAACAAACCATTAACCTATTTTTGTAGTTAAGCCCTTTACTTCATC
CGGAGATATTACAGCTAAACAGCCATGTTTACAAGCTGCATACACTTCATCCAAAGATATTACAA
CAGCTTAATGTGCTCCATGCACTTTAACCAAA
Found at i:83511552 original size:12 final size:12
Alignment explanation
Indices: 83511535--83511560 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83511525 GTCACACATG
83511535 GCTGAGACAAAT
1 GCTGAGACAAAT
83511547 GCTGAGACAAAT
1 GCTGAGACAAAT
83511559 GC
1 GC
83511561 CAGTGTGGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.15
Consensus pattern (12 bp):
GCTGAGACAAAT
Found at i:83517816 original size:79 final size:81
Alignment explanation
Indices: 83517707--83517889 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
83517697 TACTCATTCA
* * *
83517707 AATGCCTTCGGGACATATCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
83517770 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* *
83517787 AATGCCTTC-GGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCTTTCGGATCTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
83517850 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
83517866 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
83517890 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:83517889 original size:40 final size:40
Alignment explanation
Indices: 83517705--83517889 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
83517695 GCTACTCATT
* * *
83517705 CAAATGCCTTCGGGACATATCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
83517745 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
83517785 CCAATGCCTTC-GGACTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
83517824 CAAATGCTTTC-GGATCTTAGCCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
83517865 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83517890 CATCATTCGA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 37 0.29
40 79 0.62
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:83523676 original size:631 final size:627
Alignment explanation
Indices: 83522451--83524270 Score: 2965
Period size: 628 Copynumber: 2.9 Consensus size: 627
83522441 GAACCAAAAA
* * *
83522451 TAAAAAAAATTATTTTATTTTATTTTATGGTTGGCATCATGATAGGAAGGTCACATGAAAATTTT
1 TAAAAAAAATAATTTTGTTTTATTTTATGGTTGGCATCTTGATAGGAAGGTCACATGAAAATTTT
* * * * *
83522516 GGTATGAAATTTTTACCGATTGTGTATTTAATTAAGGAAAAGACTAAATTGTATAAAATGCATAA
66 GGTATGAAAATTTTACTGATTGTGTGTTTAATTAAGGAAAGGACTAAATTGTATAAAATGCAAAA
* *
83522581 GTTGGGTTCTAGTAGCTATAGGTATCAAA-TAGCTATGGAATTTAAAACTTAAGGTCCTTTTATG
131 GTTGGGTTCTAGTAGCTATAGGTATCAAATTAGCTATGGAATTCAAAACTTAAGGTCCTTATATG
*
83522645 GTAATTAGGCTATTGAAGAGTAGTTAGTAGATATTTTAATGACTCATCCATGGAAAAATTAGAAA
196 GTAATTAGACTATTGAAGAGTAGTTAGTAGATATTTTAATGACTCATCCATGGAAAAATTAGAAA
* *
83522710 AGGGTAGGGACTAAATTGAAAATAAATAAAATTAATAGATGATAATTAATTAAAAAGAAAAAATC
261 ATGGTAGGGACTAAATTGAAAATCAATAAAATTAATAGATGATAATTAATTAAAAAGAAAAAATC
*
83522775 ATCTATTATCATATCATCTTCCCCAATTTTTCTATGGAAACCCTAGGAGA-AGGGAAGAAAACTT
326 ATCTATTTTCATATCATCTTCCCCAATTTTTCTATGGAAACCCTAGGAGAGA-GGAAGAAAACTT
83522839 TTCAAGCTTAATAAGGTATGAAATCAAGTCCCGTTTTTAGTAATTTCTATATTTTTTGAATCGGG
390 TTCAAGCTTAATAAGGTATGAAATCAAGTCCCGTTTTTAGTAATTTCTATATTTTTTGAATCGGG
83522904 ATAGCCTAATCTTTCTATTTAGGGGATTTATTTGAAAAGTTATCAAGGTATGAAATTTGGGTCAT
455 ATAGCCTAATC-TTCTATTTAGGGGATTTATTTGAAAAGTTATCAAGGTATGAAATTTGGGTCAT
*
83522969 GGATGAATATGCTAAAATTTTGAAATTTATGGTAGAAAATGAACAGTTATTTGTAACAGCCCAAT
519 GGATGAATATGCTAAAAATTTGAAATTTATGGTAGAAAATGAACAGTTATTTGTAACAGCCCAAT
*
83523034 TTCTATGAAGTAGGAACAGTGGTTTCTAGATCACAAATCCGAGT
584 TTCTATGAAGTAGGAACAGTGGTTTCGAGATCACAAATCCGAGT
*
83523078 TAAAAACAAAAATAATTTTGTTTTATTTTATGGTTGGCATCTTGATAGGAATGTCACATGAAAAT
1 T--AAA-AAAAATAATTTTGTTTTATTTTATGGTTGGCATCTTGATAGGAAGGTCACATGAAAAT
*
83523143 TTTGGTACGAAAATTTTACTGATTGTGTGTTTAATTAAGGAAAGGACTAAATTGTATAAAATGCA
63 TTTGGTATGAAAATTTTACTGATTGTGTGTTTAATTAAGGAAAGGACTAAATTGTATAAAATGCA
83523208 AAAGTTGGGTTCTAGTAGCTATAGGTATCAAATTAGCTATGGAATTCAAAACTTAAGGTCCTTAT
128 AAAGTTGGGTTCTAGTAGCTATAGGTATCAAATTAGCTATGGAATTCAAAACTTAAGGTCCTTAT
* *
83523273 ATGGTAATTAAACCATTGAAGAGTAGTTAGTAGATATTTTAATGACTCATCCATGGAAAAATTAG
193 ATGGTAATTAGACTATTGAAGAGTAGTTAGTAGATATTTTAATGACTCATCCATGGAAAAATTAG
*
83523338 AAAATGGTAGGGAATAAATTGAAAATCAATAAAATTAATAGATGATAATTAATTAAAAAGAAAAA
258 AAAATGGTAGGGACTAAATTGAAAATCAATAAAATTAATAGATGATAATTAATTAAAAAGAAAAA
*
83523403 ATCATCTATTTTCATATCATTTTCCCCAATTTTTCTATGGAAACCCTAGGAGAGAGGAAGAAAAC
323 ATCATCTATTTTCATATCATCTTCCCCAATTTTTCTATGGAAACCCTAGGAGAGAGGAAGAAAAC
83523468 TTTTCAAGCTTAATAAGGTATGAAATCAAGTCCCGTTTTTAGTAATTTCTATATTTTTTGAATCG
388 TTTTCAAGCTTAATAAGGTATGAAATCAAGTCCCGTTTTTAGTAATTTCTATATTTTTTGAATCG
83523533 GGATAGCCTAATCGTTCTATTTAGGGGATTTATTTGAAAAGTTATCAAGGTATGAAATTTGGGTC
453 GGATAGCCTAATC-TTCTATTTAGGGGATTTATTTGAAAAGTTATCAAGGTATGAAATTTGGGTC
83523598 ATGGATGAATATGCTAAAAATTTGAAATTTATGGTAGAAAATGAACAGTTATTTGTAACAGCCCA
517 ATGGATGAATATGCTAAAAATTTGAAATTTATGGTAGAAAATGAACAGTTATTTGTAACAGCCCA
83523663 ATTTC-AGTGAAGTAGGAACAGTGGTTTCGAGATCACAAATCCGAGT
582 ATTTCTA-TGAAGTAGGAACAGTGGTTTCGAGATCACAAATCCGAGT
*
83523709 TAAAAAAAATAATTTTGTTTTATTTTATGGTTGGCATCTTGATAGAAAGGTCACATGAAAATTTT
1 TAAAAAAAATAATTTTGTTTTATTTTATGGTTGGCATCTTGATAGGAAGGTCACATGAAAATTTT
* *
83523774 GATATGAAAATTTTA-TCGATTGTGTGGTTAATT-AGGTAAAGGACTAAATTGTATAAAATGCAA
66 GGTATGAAAATTTTACT-GATTGTGTGTTTAATTAAGG-AAAGGACTAAATTGTATAAAATGCAA
* *
83523837 AAGTTGGGTTCTAGTAGCTATAGGTATCAAATTAGCTATGAAATTCAAAACTTAAGGCCCTTATA
129 AAGTTGGGTTCTAGTAGCTATAGGTATCAAATTAGCTATGGAATTCAAAACTTAAGGTCCTTATA
* * *
83523902 TGGCAATTAGACTATTGAAGTGTAGTTAGTAGATATTTTAATGACTCATCCATGGAAAAATT-TA
194 TGGTAATTAGACTATTGAAGAGTAGTTAGTAGATATTTTAATGACTCATCCATGGAAAAATTAGA
* * * * * *
83523966 AAATGGCAAGGGACTAAATTGGAAATCACTAAAATTAAAAGATGGA-AATTAAATAAAAAGAAAT
259 AAATGG-TAGGGACTAAATTGAAAATCAATAAAATTAATAGAT-GATAATTAATTAAAAAGAAAA
* * ** * *
83524030 ATTCATCTAATTTCATATCATCTTCCCCAAAATTTCTATGGAAACCCTAGGAGAGAGGAGGACAA
322 AATCATCTATTTTCATATCATCTTCCCCAATTTTTCTATGGAAACCCTAGGAGAGAGGAAGAAAA
** * * * *
83524095 CTTACCAAGCTTGAA-AAGGTATGAAATCAAGTCCCGTTTTTAATTATTTTTATA-TTTTTGAAA
387 CTTTTCAAGCTT-AATAAGGTATGAAATCAAGTCCCGTTTTTAGTAATTTCTATATTTTTTGAAT
* * *
83524158 CTGGGATAGTCTAATCTCTCTATTTAGGGGATTAATTTGAAAAATTATCAAGGTATGAAATTTGG
451 C-GGGATAGCCTAATCT-TCTATTTAGGGGATTTATTTGAAAAGTTATCAAGGTATGAAATTTGG
* * *
83524223 GTCATGGATGAATATGTTGAAAATTAGAAATTTATGGTAGAAAATGAA
514 GTCATGGATGAATATGCTAAAAATTTGAAATTTATGGTAGAAAATGAA
83524271 AATTTATTCA
Statistics
Matches: 1119, Mismatches: 61, Indels: 25
0.93 0.05 0.02
Matches are distributed among these distances:
627 22 0.02
628 488 0.44
629 10 0.01
630 146 0.13
631 452 0.40
632 1 0.00
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (627 bp):
TAAAAAAAATAATTTTGTTTTATTTTATGGTTGGCATCTTGATAGGAAGGTCACATGAAAATTTT
GGTATGAAAATTTTACTGATTGTGTGTTTAATTAAGGAAAGGACTAAATTGTATAAAATGCAAAA
GTTGGGTTCTAGTAGCTATAGGTATCAAATTAGCTATGGAATTCAAAACTTAAGGTCCTTATATG
GTAATTAGACTATTGAAGAGTAGTTAGTAGATATTTTAATGACTCATCCATGGAAAAATTAGAAA
ATGGTAGGGACTAAATTGAAAATCAATAAAATTAATAGATGATAATTAATTAAAAAGAAAAAATC
ATCTATTTTCATATCATCTTCCCCAATTTTTCTATGGAAACCCTAGGAGAGAGGAAGAAAACTTT
TCAAGCTTAATAAGGTATGAAATCAAGTCCCGTTTTTAGTAATTTCTATATTTTTTGAATCGGGA
TAGCCTAATCTTCTATTTAGGGGATTTATTTGAAAAGTTATCAAGGTATGAAATTTGGGTCATGG
ATGAATATGCTAAAAATTTGAAATTTATGGTAGAAAATGAACAGTTATTTGTAACAGCCCAATTT
CTATGAAGTAGGAACAGTGGTTTCGAGATCACAAATCCGAGT
Found at i:83526332 original size:47 final size:44
Alignment explanation
Indices: 83526222--83526345 Score: 117
Period size: 47 Copynumber: 2.7 Consensus size: 44
83526212 TTATTTGTGT
* *
83526222 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCAT--GCAACATTACGAGA
*
83526268 GCCCGTGTAAGACCATGTCTAGGACATGGCAT-CAACATTGAGACGAGA
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATGCAACATT---ACGAGA
* *
83526316 GCTAGTGTAAGACATGT-TTGAGACATGCAT
1 GCCAGTGTAAGACATGTCTAG-GACATGCAT
83526346 CGGCTATGTA
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
45 6 0.09
46 17 0.26
47 24 0.36
48 19 0.29
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATGCAACATTACGAGA
Found at i:83527792 original size:40 final size:40
Alignment explanation
Indices: 83527699--83527915 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
83527689 AAGCCAAGTA
* * *
83527699 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
83527737 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
83527777 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
83527817 CCTTCGGGACTTAG-CCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
83527856 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
83527897 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83527916 TTATCATCCA
Statistics
Matches: 161, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
38 12 0.07
39 54 0.34
40 67 0.42
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:83527835 original size:79 final size:78
Alignment explanation
Indices: 83527699--83527912 Score: 274
Period size: 79 Copynumber: 2.7 Consensus size: 78
83527689 AAGCCAAGTA
* * * * *
83527699 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAA
*
83527762 TAACTCGCACCAATG
64 TAACTCGCACAAATG
*
83527777 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGATGTAAT
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAAT
83527842 AACTCGCACAAATG
65 AACTCGCACAAATG
83527856 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACT--CGCACAAATGCCTTCGGGACTTAGCC
83527913 CGGTTATCAT
Statistics
Matches: 122, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 14 0.11
79 66 0.54
80 38 0.31
81 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAATA
ACTCGCACAAATG
Found at i:83535892 original size:40 final size:40
Alignment explanation
Indices: 83535799--83536016 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
83535789 AAGCCAAGTA
* * *
83535799 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
83535837 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
83535877 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
83535917 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
83535957 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
83535998 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83536017 TTATCATCCA
Statistics
Matches: 163, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 106 0.65
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:83538649 original size:49 final size:50
Alignment explanation
Indices: 83538579--83538816 Score: 268
Period size: 49 Copynumber: 4.8 Consensus size: 50
83538569 TGAGGTCATG
*
83538579 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCGCA
* * * * * *
83538628 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TTAGGTCGCA
* * **
83538679 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT--CA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCGCA
* * * *
83538727 TGTGAGTAGTACTAAGTACAGACTACTACGTGTACCGGATAATT-GGTCGCA
1 TGT--GTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCGCA
* *
83538778 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
83538817 GCTTTGGCTA
Statistics
Matches: 157, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
48 4 0.03
49 71 0.45
50 39 0.25
51 43 0.27
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCGCA
Found at i:83538846 original size:150 final size:150
Alignment explanation
Indices: 83538571--83538854 Score: 410
Period size: 150 Copynumber: 1.9 Consensus size: 150
83538561 ATCTATTGTG
* * * *
83538571 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCATGTGAGTAGTACTAAGTACAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* * * * *
83538636 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCA
83538701 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
83538721 AGGTCATGTGAGTAGTACTAAGTACAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCATGTGAGTAGTACTAAGTACAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* * * * *
83538786 ACTAAGTGTAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTG-A-AAATATGTGCAGG
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAAC-TTCGAT-CAAGTGTGTAGAAATAAGTGCAGG
83538849 CAACTA
129 CAACTA
83538855 AGTATCAGTT
Statistics
Matches: 118, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
150 106 0.90
151 5 0.04
152 7 0.06
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (150 bp):
AGGTCATGTGAGTAGTACTAAGTACAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCA
ACTACGTGTATCAGATGGTT
Found at i:83541571 original size:29 final size:29
Alignment explanation
Indices: 83541514--83541645 Score: 115
Period size: 29 Copynumber: 4.6 Consensus size: 29
83541504 AATTTAAGCC
* **
83541514 CGCACACACAGTGCCATA-CCTTCCGAGCT
1 CGCACACATAGTGCCATATTTTTCC-AGCT
** *
83541543 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATTTTTCCAGCT
* *
83541572 TGCACACATAGTGTCATATTTTTCCAGCAT
1 CGCACACATAGTGCCATATTTTTCCAGC-T
* * * *
83541602 -GCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATTTTTCCAGCT
*
83541630 CGCACACTTAGTGCCA
1 CGCACACATAGTGCCA
83541646 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
29 80 0.94
30 5 0.06
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACATAGTGCCATATTTTTCCAGCT
Found at i:83547446 original size:43 final size:43
Alignment explanation
Indices: 83547380--83547536 Score: 194
Period size: 43 Copynumber: 3.7 Consensus size: 43
83547370 AGCTCGTACA
*
83547380 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
** * *
83547423 ATGCCTTTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
* * *
83547465 ATGCCAACGTCCTAGACGTGGTCTTACATGTAACTCAAA-AGTCA
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAA-TCAAATA-TCG
83547509 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
83547537 CGATAACACA
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 40 0.42
44 27 0.28
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:83547534 original size:86 final size:85
Alignment explanation
Indices: 83547380--83547539 Score: 243
Period size: 85 Copynumber: 1.9 Consensus size: 85
83547370 AGCTCGTACA
* **
83547380 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCTTTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCAATGCCAATGTCCCAGACAGGGT
83547445 CTTACACGAAATCAAATATG
66 CTTACACGAAATCAAATATG
*
83547465 ATGCCAACGTCCTAGACGTGGTCTTACATGTAACTCAAA-AGTCAATGCCAATGTCCCAGAC-GT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-TCAAATA-TCAATGCCAATGTCCCAGACAG-
83547528 GGTCTTACACGA
63 GGTCTTACACGA
83547540 TAACACATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
85 34 0.50
86 34 0.50
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCAATGCCAATGTCCCAGACAGGGT
CTTACACGAAATCAAATATG
Found at i:83564678 original size:52 final size:52
Alignment explanation
Indices: 83564600--83564706 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
83564590 TTTATGAGTT
*
83564600 TCATGTTTTTGAGATCCTTGTATCTTAATTTAGCCAACCTGCATGTCTAGTC
1 TCATGTTTTTGAGATCCTTGTATCTTAATATAGCCAACCTGCATGTCTAGTC
*
83564652 TCATGTTTTTGAGATCTTTGTATCTTAATATAGCCAACCTGCATGTCTAGTC
1 TCATGTTTTTGAGATCCTTGTATCTTAATATAGCCAACCTGCATGTCTAGTC
83564704 TCA
1 TCA
83564707 AAATTCTTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (52 bp):
TCATGTTTTTGAGATCCTTGTATCTTAATATAGCCAACCTGCATGTCTAGTC
Found at i:83565079 original size:6 final size:6
Alignment explanation
Indices: 83565058--83565092 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
83565048 GGTTTCCAAA
**
83565058 AAATGG AAATAT AAATGG AAATGG AAATGG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
83565093 ATCCATTTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.26, T:0.20
Consensus pattern (6 bp):
AAATGG
Found at i:83573869 original size:2 final size:2
Alignment explanation
Indices: 83573862--83573908 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
83573852 AATTAGATAA
83573862 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83573904 AT AT A
1 AT AT A
83573909 CTTTTTCTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:83582073 original size:93 final size:93
Alignment explanation
Indices: 83581961--83582132 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83581951 GCCCATAAGT
* *
83581961 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83582026 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
83582054 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83582119 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
83582133 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83582128 original size:46 final size:46
Alignment explanation
Indices: 83581953--83582128 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
83581943 TGTAACCCGC
* * *
83581953 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
83581999 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
83582049 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
83582092 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83582129 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:83584088 original size:30 final size:30
Alignment explanation
Indices: 83584044--83584132 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
83584034 CAAAGATAAC
83584044 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
83584073 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
83584103 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
83584133 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:83584092 original size:15 final size:15
Alignment explanation
Indices: 83584044--83584123 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
83584034 CAAAGATAAC
*
83584044 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
83584058 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
83584073 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
83584088 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
83584103 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
83584118 AAGAAA
1 AAGAAA
83584124 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:83584132 original size:15 final size:15
Alignment explanation
Indices: 83584055--83584132 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
83584045 AGAAAACCGA
83584055 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
83584070 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
83584084 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
83584099 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
83584115 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
83584130 ATA
1 ATA
83584133 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83587198 original size:93 final size:93
Alignment explanation
Indices: 83587086--83587257 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83587076 GCCCATAAGT
* *
83587086 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83587151 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
83587179 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83587244 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
83587258 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83587253 original size:46 final size:46
Alignment explanation
Indices: 83587078--83587253 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
83587068 TGTAACCCGC
* * *
83587078 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
83587124 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
83587174 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
83587217 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83587254 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:83591962 original size:36 final size:36
Alignment explanation
Indices: 83591917--83591987 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
83591907 TATTAAATAG
83591917 TTTATTTGCTTATGACTTACTAGGCTACAAAAGCTA
1 TTTATTTGCTTATGACTTACTAGGCTACAAAAGCTA
83591953 TTTATTTGCTTATGACTTACTAGGCTACAAAAGCT
1 TTTATTTGCTTATGACTTACTAGGCTACAAAAGCT
83591988 TACTTTGTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (36 bp):
TTTATTTGCTTATGACTTACTAGGCTACAAAAGCTA
Found at i:83595695 original size:21 final size:21
Alignment explanation
Indices: 83595669--83595708 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
83595659 CACTTGACAT
83595669 AGGGGCACACGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAA
*
83595690 AGGGGCACACGTCCGTGTG
1 AGGGGCACACGCCCGTGTG
83595709 GCCAATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGAA
Found at i:83598591 original size:46 final size:46
Alignment explanation
Indices: 83598522--83598728 Score: 136
Period size: 46 Copynumber: 4.4 Consensus size: 46
83598512 CAATGCCATA
*
83598522 TCCCAGACATGGTCTTACCCTGACTATCATCTCGTA-GCCGATGCATG
1 TCCCAGACAT-GTCTTACACTGACTATCATCTCG-AGGCCGATGCATG
* * * * *
83598569 TCCCAGACATGTCTTACACTGACT-TACGTCTTGAGGTCGATGTATA
1 TCCCAGACATGTCTTACACTGACTAT-CATCTCGAGGCCGATGCATG
* * * *
83598615 TCCCAAACATGTCTTACACT-AGC-ACTCGTCTCGATGCTGATGCCATG
1 TCCCAGACATGTCTTACACTGA-CTA-TCATCTCGAGGCCGATG-CATG
* * * * * * **
83598662 TCCCAGACATGGTATTATACTGGCTCTCATAAT-GTGGCTAATGCATG
1 TCCCAGACAT-GTCTTACACTGACTATCAT-CTCGAGGCCGATGCATG
*
83598709 TCTCAGACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
83598729 AGTCCACAAT
Statistics
Matches: 124, Mismatches: 26, Indels: 21
0.73 0.15 0.12
Matches are distributed among these distances:
45 3 0.02
46 66 0.53
47 35 0.28
48 19 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTGACTATCATCTCGAGGCCGATGCATG
Found at i:83611235 original size:43 final size:43
Alignment explanation
Indices: 83611137--83611236 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 43
83611127 TTACCGAATG
* *
83611137 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTATA
1 TGATTACATGTAAGACCATGTCTGGGACAGTGGCATCGATATA
* * *
83611180 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATA
1 TGATTACATGTAAGACCATGTCTGGGACAGTGGCATCGATATA
*
83611223 TGATAACATGTAAG
1 TGATTACATGTAAG
83611237 GCTATATCTG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACAGTGGCATCGATATA
Done.